BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2827
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 89/103 (86%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
IL VN VNVEGATHKQVV+LI++G L LTV+SV E ++
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVGGESESKV 109
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/98 (77%), Positives = 87/98 (88%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
IL VN VNVEGATHKQVV+LI++G L LTV+SV E
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESE 104
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 86/95 (90%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 7 PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
IL VN VNVEGATHKQVV+LI++G L LTV+SV
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 68.9 bits (167), Expect = 4e-12, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
EV++AK+D G +V +GG S+ +G +Y V A++ GAAE G I KGDR
Sbjct: 7 EVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIY-----VKAIIPKGAAESDGRIHKGDR 61
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
+LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 62 VLAVNGVSLEGATHKQAVETLRNTGQVVHL 91
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
EV++AK+D G +V +GG S+ +G +Y V AV+ GAAE G I KGDR
Sbjct: 12 EVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIY-----VKAVIPQGAAESDGRIHKGDR 66
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
+LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 67 VLAVNGVSLEGATHKQAVETLRNTGQVVHL 96
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV++AK+D G +V G V+ + +G +Y V A++ GAAE G I KGDR+
Sbjct: 15 EVELAKTDGSLGISVTGGVNTSVR----HGGIY-----VKAIIPKGAAESDGRIHKGDRV 65
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 66 LAVNGVSLEGATHKQAVETLRNTGQVVHL 94
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV++AK+D G +V G V+ + +G +Y V AV+ GAAE G I KGDR+
Sbjct: 8 EVELAKNDNSLGISVTGGVNTSVR----HGGIY-----VKAVIPQGAAESDGRIHKGDRV 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 59 LAVNGVSLEGATHKQAVETLRNTGQVVHL 87
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV++AK+D G +V G V+ + +G +Y V AV+ GAAE G I KGDR+
Sbjct: 8 EVELAKNDNSLGISVTGGVNTSVR----HGGIY-----VKAVIPQGAAESDGRIHKGDRV 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 59 LAVNGVSLEGATHKQAVETLRNTGQVVHL 87
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV++AK+D G +V G V+ + +G +Y V A++ GAAE G I KGDR+
Sbjct: 7 EVELAKTDGSLGISVTGGVNTSVR----HGGIY-----VKAIIPKGAAESDGRIHKGDRV 57
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 58 LAVNGVSLEGATHKQAVETLRNTGQVVHL 86
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 17/113 (15%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR++ + K TG GFN V G+ EG VS +LAGG A+ +G +R+G
Sbjct: 16 PRKIILHKGSTGLGFNIVGGEDGEG--------------IFVSFILAGGPADLSGELRRG 61
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
DRIL+VN VN+ ATH+Q +K G +++ V PEE R E SG
Sbjct: 62 DRILSVNGVNLRNATHEQAAAALKRAGQSVTI-VAQYRPEEYSRFESSGPSSG 113
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR++ + K TG GFN V G+ EG VS +LAGG A+ +G +R+G
Sbjct: 13 PRKIILHKGSTGLGFNIVGGEDGEG--------------IFVSFILAGGPADLSGELRRG 58
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
DRIL+VN VN+ ATH+Q +K G +++ V PEE R E
Sbjct: 59 DRILSVNGVNLRNATHEQAAAALKRAGQSVTI-VAQYRPEEYSRFE 103
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 61.2 bits (147), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 10 REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ V + K D+ GFGF +RG ++ + LQ++ +V GG A +AG+R GD
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 68
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
++ VN NV H+QVV +I+ GG+ L + V+ V+
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 10 REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ V + K D+ GFGF +RG ++ + LQ++ +V GG A +AG+R GD
Sbjct: 9 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 68
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
++ VN NV H+QVV +I+ GG+ L + V+ V+
Sbjct: 69 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
PR + I + TG GFN+ G G +S +LAGG A+ +G +RKGD
Sbjct: 308 PRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 354
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
+IL+VN V++ A+H+Q +K+ G +++ + PEE R E
Sbjct: 355 QILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 398
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD+I
Sbjct: 157 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 209
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA---ERLEPPDDHSGYQQ 122
LAVN+V +E H+ V +K+ DV+ L V P A + PPD + Y Q
Sbjct: 210 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV--AKPSNAYLSDSYAPPDITTSYSQ 263
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K G+GF++ G+ + GQ ++ V G AEKAG+ GDR
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
++ VN NVE TH+QVV I++ + + L V V PE+ RL
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPEQDTRL 91
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 10 REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ V + K D+ GFGF +RG ++ + LQ++ +V GG A +AG+R GD
Sbjct: 29 KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 88
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
++ VN NV H+QVV +I+ GG+ L + V+ V+
Sbjct: 89 LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 124
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR + I + TG GFN V G+ EG +S +LAGG A+ +G +RKG
Sbjct: 7 PRRIVIHRGSTGLGFNIVGGEXGEG--------------IFISFILAGGPADLSGELRKG 52
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
D+IL+VN V++ A+H+Q +K+ G +++ + PEE R E
Sbjct: 53 DQILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 97
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 58.5 bits (140), Expect = 6e-09, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K G+GF++ G+ + GQ ++ V G AEKAG+ GDR
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
++ VN NVE TH+QVV I++ + + L V V PE E+L
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPETDEQL 91
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR + I + TG GFN V G+ EG +S +LAGG A+ +G +RKG
Sbjct: 12 PRRIVIHRGSTGLGFNIVGGEXGEG--------------IFISFILAGGPADLSGELRKG 57
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
D+IL+VN V++ A+H+Q +K+ G +++ + PEE R E
Sbjct: 58 DQILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 102
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 16/91 (17%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
R V++A+ G+GF + GQ AP +S V+ G A+ G+R GD+I
Sbjct: 4 RSVEVARGRAGYGFTLSGQ---------------APCV-LSCVMRGSPADFVGLRAGDQI 47
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN +NV+ A+H+ VV+LI VL + +
Sbjct: 48 LAVNEINVKKASHEDVVKLIGKCSGVLHMVI 78
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 58.2 bits (139), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K G+GF++ G+ + GQ ++ V G AEKAG+ GDR
Sbjct: 4 PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
++ VN NVE TH+QVV I++ + + L V V PEE
Sbjct: 51 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPEE 87
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 57.8 bits (138), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V I K G+GF +R + GQ+ + + G AE AG++ D
Sbjct: 6 PRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDL 52
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
++AVN +VE H VVE+I+ GGD +L V+ E R
Sbjct: 53 VVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELERPHR 94
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 17/106 (16%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR+V + K TG GFN V G+ EG VS +LAGG A+ +G +++G
Sbjct: 4 PRKVVLHKGSTGLGFNIVGGEDGEG--------------IFVSFILAGGPADLSGELQRG 49
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
D+IL+VN +++ GA+H+Q +K G +++ + PE+ R E
Sbjct: 50 DQILSVNGIDLRGASHEQAAAALKGAGQTVTI-IAQYQPEDYARFE 94
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR + I + TG GFN V G+ EG +S +LAGG A+ +G +RKG
Sbjct: 15 PRRIVIHRGSTGLGFNIVGGEDGEG--------------IFISFILAGGPADLSGELRKG 60
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
D+IL+VN V++ A+H+Q +K+ G +++ + PEE R E
Sbjct: 61 DQILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 105
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
PR + I + TG GFN+ I GE + +S +LAGG A+ +G +RKGD
Sbjct: 15 PRRIVIHRGSTGLGFNI------------IGGEDGEGI-FISFILAGGPADLSGELRKGD 61
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
+IL+VN V++ A+H+Q +K+ G +++ + PEE R E
Sbjct: 62 QILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 105
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K +G+GFN+ S+ GQ + +V AE +G+R DR
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQDR 56
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
I+ VN V +EG H VV I++GGD L V+
Sbjct: 57 IVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 89
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR ++ + + G+GF++ G+ GQ + V G AE A +R GDR
Sbjct: 2 PRLCRLVRGEQGYGFHLHGEKGRRGQF-------------IRRVEPGSPAEAAALRAGDR 48
Query: 69 ILAVNNVNVEGATHKQVVELIKS 91
++ VN VNVEG TH QVV+ IK+
Sbjct: 49 LVEVNGVNVEGETHHQVVQRIKA 71
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V I K G+GF +R + GQ+ + + G AE AG++ D
Sbjct: 3 PRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDL 49
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
++AVN +VE H VVE+I+ GGD +L V+
Sbjct: 50 VVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 82
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQ-LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PR + K +G+GFN+ S+ GQ +RS++ + AE +G+R D
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD--------------SPAEASGLRAQD 55
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
RI+ VN V +EG H VV I++GGD L V+ +E
Sbjct: 56 RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
R V I K GFGF V G + V +V GGAA KAG+++GDRI
Sbjct: 10 RCVIIQKDQHGFGFTVSGD----------------RIVLVQSVRPGGAAMKAGVKEGDRI 53
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
+ VN V ++H +VV+LIKSG V +LT++
Sbjct: 54 IKVNGTMVTNSSHLEVVKLIKSGAYV-ALTLL 84
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K G+GF++ G+ + GQ ++ V G AEKAG+ GDR
Sbjct: 3 PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 49
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
++ VN NVE TH+QVV I++ + + L V V PE
Sbjct: 50 LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPE 85
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K +G+GFN+ S+ GQ + +V AE +G+R DR
Sbjct: 10 PRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQDR 56
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
I+ VN V +EG H VV I++GGD L V+
Sbjct: 57 IVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 89
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 13/81 (16%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRIL 70
V++ K+D G GFN+ G E +P+ ++S V+ GG A++ G+++GD++L
Sbjct: 9 VELPKTDEGLGFNIMGGK-----------EQNSPI-YISRVIPGGVADRHGGLKRGDQLL 56
Query: 71 AVNNVNVEGATHKQVVELIKS 91
+VN V+VEG H++ VEL+K+
Sbjct: 57 SVNGVSVEGEQHEKAVELLKA 77
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 54.7 bits (130), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 11 EIKLIKGPKGLGFSIAGGV--GNQHWPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 63
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVNNV +E TH++ V +K+ D + L V
Sbjct: 64 LAVNNVALEEVTHEEAVTALKNTSDFVYLKV 94
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQ-LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PR + K +G+GFN+ S+ GQ +RS++ + AE +G+R D
Sbjct: 5 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD--------------SPAEASGLRAQD 50
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
RI+ VN V +EG H VV I++GGD L V+
Sbjct: 51 RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 84
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 14 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 66
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVNNV +E TH++ V +K+ D + L V
Sbjct: 67 LAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 97
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 2 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 54
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVNNV +E TH++ V +K+ D + L V
Sbjct: 55 LAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 85
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA+K G ++ GDR+
Sbjct: 27 EIKLFKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIDGGAAQKDGRLQVGDRL 79
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L VNN ++E TH++ V ++K+ +V+ L V
Sbjct: 80 LMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 12 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 64
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVNNV +E TH++ V +K+ D + L V
Sbjct: 65 LAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 95
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV + K G GF++ G + G Q + +Y ++ ++ GGAA+K G ++ GDR+
Sbjct: 6 EVNLLKGPKGLGFSIAGGI--GNQHIPGDNSIY-----ITKIIEGGAAQKDGRLQIGDRL 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVNN N++ H++ V +K+ D++ L V
Sbjct: 59 LAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + + K GFGF +R + G+ P Q + V G A+KAG++ GDR
Sbjct: 4 PRCLHLEKGPQGFGFLLREEKGLDGR----------PGQFLWEVDPGLPAKKAGMQAGDR 53
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
++AV +VEG H++ V I+ G +SLTV+ EA+R
Sbjct: 54 LVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVD---PEADR 92
>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|B Chain B, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|C Chain C, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|D Chain D, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|E Chain E, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|F Chain F, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|G Chain G, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|H Chain H, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
Length = 112
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
GFGF +RG +E + LQ++ +V G A +AG+R GD ++ VN VNV
Sbjct: 23 GFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWRAGLRTGDFLIEVNGVNVVK 82
Query: 80 ATHKQVVELIKSGGDVLSLTVISVS--PEE 107
HKQVV LI+ GG+ L + V+SV+ PEE
Sbjct: 83 VGHKQVVGLIRQGGNRLVMKVVSVTRKPEE 112
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
GPRE +++K + +GF +R + G L + + G AEKAG+ G
Sbjct: 1 GPRESKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDG 47
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
DR+L +N V V+ H QVVEL++ G+ ++L V+
Sbjct: 48 DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 82
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V++++ GGAA K G ++ GD++
Sbjct: 6 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTSIVEGGAAHKDGKLQIGDKL 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V +E TH++ V +K+ D + L V
Sbjct: 59 LAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 6 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V++E TH++ V +K+ D + L V
Sbjct: 59 LAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 6 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V +E TH++ V +K+ D + L V
Sbjct: 59 LAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PRE +++K + +GF +R + G L + + G AEKAG+ GD
Sbjct: 14 PRECKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDGD 60
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
R+L +N V V+ H QVVEL++ G+ ++L V+
Sbjct: 61 RVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 94
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 14 IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAV 72
+ + G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++LAV
Sbjct: 8 VPRGSKGLGFSIAGGV--GNQHWPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKLLAV 60
Query: 73 NNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
NNV +E TH++ V +K+ D + L V P E++
Sbjct: 61 NNVALEEVTHEEAVTALKNTSDFVYLKV--AKPGSGEKI 97
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K G+GFN+ S P Q++ +V G A ++G+R DR
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSR-------------PGQYIRSVDPGSPAARSGLRAQDR 51
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
++ VN NVEG H +VV IK+ D L V+ S
Sbjct: 52 LIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 87
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 6 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V +E TH++ V +K+ D + L V
Sbjct: 59 LAVNSVCLEEVTHEEAVTALKNTSDFVYLKV 89
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD+I
Sbjct: 6 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V +E H+ V +K+ DV+ L V
Sbjct: 59 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 89
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
R V I K D GFG V G P+ V +V GAA +AG++ GDRI
Sbjct: 9 RCVIIQKDDNGFGLTVSGD---------------NPV-FVQSVKEDGAAMRAGVQTGDRI 52
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
+ VN V + H +VV+LIKSG V +LTV P
Sbjct: 53 IKVNGTLVTHSNHLEVVKLIKSGSYV-ALTVQGRPP 87
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD++
Sbjct: 1 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 53
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
LAVN+V +E TH++ V +K+ D + L
Sbjct: 54 LAVNSVCLEEVTHEEAVTALKNTSDFVYL 82
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PRE +++K + +GF +R + G L + + G AEKAG+ GD
Sbjct: 3 PRESKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDGD 49
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
R+L +N V V+ H QVVEL++ G+ ++L V+
Sbjct: 50 RVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 83
>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 96
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S+ +GP+ ++AK + G+GF+ L +I G P + V GG A+ AG
Sbjct: 2 SSGSSGPKLCRLAKGENGYGFH----------LNAIRG---LPGSFIKEVQKGGPADLAG 48
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ D I+ VN VNV +++VV+ I+S G ++L V
Sbjct: 49 LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 86
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
R V I K G+GF +R + GQ+ + + G AE AG++ D +
Sbjct: 8 RVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDLV 54
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
+AVN +VE H VVE+I+ GGD +L V+ E L P
Sbjct: 55 VAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGP 99
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD+I
Sbjct: 103 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 155
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
LAVN+V +E H+ V +K+ DV+ L V P AE +
Sbjct: 156 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV--AKPSNAETM 195
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD+I
Sbjct: 110 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 162
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V +E H+ V +K+ DV+ L V
Sbjct: 163 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 193
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD+I
Sbjct: 100 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 152
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
LAVN+V +E H+ V +K+ DV+ L V
Sbjct: 153 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 183
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 17/104 (16%)
Query: 9 PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
PR+V + + TG GFN V G+ EG +S +LAGG A+ +G +RKG
Sbjct: 8 PRKVVLHRGSTGLGFNIVGGEDGEG--------------IFISFILAGGPADLSGELRKG 53
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
DRI++VN+V++ A+H+Q +K+ G +++ V PEE R
Sbjct: 54 DRIISVNSVDLRAASHEQAAAALKNAGQAVTI-VAQYRPEEYSR 96
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 14/91 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
PR+V + + TG GFN+ G G +S +LAGG A+ +G +RKGD
Sbjct: 5 PRKVVLHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 51
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
RI++VN+V++ A+H+Q +K+ G +++
Sbjct: 52 RIISVNSVDLRAASHEQAAAALKNAGQAVTI 82
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 14 IAKSDTGFGFNVRG-QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAV 72
I ++ +GF +R +V G + ++Y V V GG A +AG+R+GD I V
Sbjct: 10 IHRAGKKYGFTLRAIRVYMG------DSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHV 63
Query: 73 NNVNVEGATHKQVVELI-KSGGDVLSLTVISVSPEE 107
N V G H +VVELI KSG V IS +P E
Sbjct: 64 NGEPVHGLVHTEVVELILKSGNKV----AISTTPLE 95
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
A+ AG+ GD I +VN +NVEG H+++V++IK+ G+VL L
Sbjct: 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
P+ ++AK + G+GF+ L +I G P + V GG A+ AG+ D
Sbjct: 4 PKLCRLAKGENGYGFH----------LNAIRG---LPGSFIKEVQKGGPADLAGLEDEDV 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
I+ VN VNV +++VV+ I+S G ++L V
Sbjct: 51 IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
+ + + + G GF++ G S +G+L P+ +V V A GAA + G +++GD+
Sbjct: 27 KSITLERGPDGLGFSIVGGYG------SPHGDL--PI-YVKTVFAKGAASEDGRLKRGDQ 77
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
I+AVN ++EG TH++ V ++K ++L V+S
Sbjct: 78 IIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 13/93 (13%)
Query: 2 YSTQQTGPR-EVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
Y+T++ G R +Q+ K G GF++ + V+ GG AP+ +V +L GAA
Sbjct: 23 YNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGS---------API-YVKNILPRGAAI 72
Query: 60 KAG-IRKGDRILAVNNVNVEGATHKQVVELIKS 91
+ G ++ GDR++ VN V++ G + ++VV L++S
Sbjct: 73 QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS 105
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 24/113 (21%)
Query: 9 PREVQIAKSDTGFGFNVRGQV------------------SEGGQLRSINGELYAPLQ--H 48
P+ V + ++ GFGF +R + + GG+ R+ P+
Sbjct: 9 PKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRN----RLEPMDTIF 64
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
V V GG A +AG+ GDRI+ VN +V G T+ QV+ LI++ L L+V+
Sbjct: 65 VKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
A+ AG+ GD I +VN +NVEG H+++V++IK+ G+VL L +
Sbjct: 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain-
Containing Protein 1
Length = 91
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
P+ ++AK + G+GF+ L +I G P + V GG A+ AG+ D
Sbjct: 4 PKLCRLAKGENGYGFH----------LNAIRG---LPGSFIKEVQKGGPADLAGLEDEDV 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
I+ VN VNV +++VV+ I+S G ++L V
Sbjct: 51 IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
A+ AG+ GD I +VN +NVEG H+++V++IK+ G+VL L
Sbjct: 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad-
Like Protein
Length = 129
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Query: 48 HVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI----- 101
+V +V+ G AA G I+ D+I+AV+ VN++G + VVE++++ G V+ LT++
Sbjct: 49 YVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS 108
Query: 102 -SVSPEEAERLEPPDD 116
S SP LEPP D
Sbjct: 109 SSTSP-----LEPPSD 119
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 1 MYSTQQTGPR-EVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
+Y+T++ G R +Q+ K G GF++ + V+ GG AP+ +V +L GAA
Sbjct: 3 VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGS---------API-YVKNILPRGAA 52
Query: 59 EKAG-IRKGDRILAVNNVNVEGATHKQVVELIKS 91
+ G ++ GDR++ VN V++ G + ++VV L++S
Sbjct: 53 IQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS 86
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
V++ + GFGF++RG R N +LY V + G AE++G +R GD IL
Sbjct: 28 VELERGAKGFGFSLRGG-------REYNMDLY-----VLRLAEDGPAERSGKMRIGDEIL 75
Query: 71 AVNNVNVEGATHKQVVELIKSGG 93
+N + H + +ELIK+GG
Sbjct: 76 EINGETTKNMKHSRAIELIKNGG 98
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
A AG++ GD + +N V+ EG T+KQVV+LI+S G++L++ +
Sbjct: 61 AHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 23/107 (21%)
Query: 3 STQQTGPR--------EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLA 54
S+ +GP EV++ +G GF + G + G +R+I +
Sbjct: 2 SSGSSGPETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTI--------------VP 47
Query: 55 GGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
GG A++ G ++ GD IL + NV+G T +QV +++++ G+ + + V
Sbjct: 48 GGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLV 94
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
V++ + GFG + G R + G+ PL V +L G A++ G + GD +L
Sbjct: 15 VELVRGYAGFGLTLGGG-------RDVAGD--TPLA-VRGLLKDGPAQRCGRLEVGDLVL 64
Query: 71 AVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+N + +G TH Q VE I++GG L L +
Sbjct: 65 HINGESTQGLTHAQAVERIRAGGPQLHLVI 94
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 9 PREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PR V + K GFN+RG + QL +S V+ A +AG+++GD
Sbjct: 16 PRIVTLKKPPGAQLGFNIRG--GKASQLGIF----------ISKVIPDSDAHRAGLQEGD 63
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDV 95
++LAVN+V+ + H + VE++K+ ++
Sbjct: 64 QVLAVNDVDFQDIEHSKAVEILKTAREI 91
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
G G +VRG + G L +S ++ GG A+ G++ GD I+ +N ++
Sbjct: 97 GLGLSVRGGLEFGCGL------------FISHLIKGGQADSVGLQVGDEIVRINGYSISS 144
Query: 80 ATHKQVVELIKSGGDV-LSLTVISVSPEEAERLEPPDDHSGYQQID 124
TH++V+ LI++ V + + I + P ++ PD+ +Q +D
Sbjct: 145 CTHEEVINLIRTEKTVSIKVRHIGLIPVKSS----PDEPLTWQYVD 186
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGE--LYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
+ I +S +GF +R +R G+ +Y+ V V GG A++AG+ GD I
Sbjct: 9 ITIQRSGKKYGFTLRA-------IRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLI 61
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLT 99
VN V G H +VVELI G+ +++T
Sbjct: 62 THVNGEPVHGMVHPEVVELILKSGNKVAVT 91
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 5 QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
Q G R V++ K T G ++ G V G L + ++ + H + V AA+ +
Sbjct: 21 QSMGLRTVEMKKGPTDSLGISIAGGV--GSPLGDV--PIFIAMMHPTGV----AAQTQKL 72
Query: 64 RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
R GDRI+ + + EG TH Q V L+K+ + + V++
Sbjct: 73 RVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
V + K GFGF++RG G Y +V + G A + G +R GD+I+
Sbjct: 15 VDMEKGAKGFGFSIRG------------GREYKMDLYVLRLAEDGPAIRNGRMRVGDQII 62
Query: 71 AVNNVNVEGATHKQVVELIKSGG 93
+N + TH + +ELIKSGG
Sbjct: 63 EINGESTRDMTHARAIELIKSGG 85
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 13 QIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAV 72
++ KS GFGF V G E LQ S VL G AA + GD I++V
Sbjct: 5 KLRKSSRGFGFTVVG-----------GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 53
Query: 73 NNVNVEGATHKQVVELIKS 91
N+ V G TH QVV++ +S
Sbjct: 54 NDTCVLGHTHAQVVKIFQS 72
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 56 GAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
G A +AG+R GD++L VN V ++GA H + VE ++ G + + V
Sbjct: 45 GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 56 GAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
G A +AG+R GD++L VN V ++GA H + VE ++ G + + V
Sbjct: 57 GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 41.2 bits (95), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 16 KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNN 74
K + GFGF + ++ R +G + ++ G A++ A ++ GDRILAVN
Sbjct: 19 KENEGFGFVIISSLN-----RPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 75 VNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
++ H +V+LIK G ++L +I P+E E P SG
Sbjct: 74 QSIINMPHADIVKLIKDAGLSVTLRII---PQE-ELNSPSGPSSG 114
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 13 QIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAV 72
++ KS GFGF V G E LQ S VL G AA + GD I++V
Sbjct: 23 KLRKSSRGFGFTVVG-----------GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71
Query: 73 NNVNVEGATHKQVVELIKS 91
N+ V G TH QVV++ +S
Sbjct: 72 NDTCVLGHTHAQVVKIFQS 90
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 41.2 bits (95), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 5 QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
Q PR V++ + + G ++ G G +L NGE+ + + VL A K G
Sbjct: 1 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLS--NGEVMRGI-FIKHVLEDSPAGKNGT 57
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
++ GDRI+ V+ +++ A+H+Q VE I+ G+ + V S+
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 15 AKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNN 74
AK+ G GF++RG G + +VS V G AEK G+R GD+IL VN+
Sbjct: 17 AKAHEGLGFSIRG------------GSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVND 64
Query: 75 VNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDD 116
++ TH + V+ +K G L L+V S A R+ P
Sbjct: 65 KSLARVTHAEAVKALK-GSKKLVLSVYS-----AGRISGPSS 100
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+ + + +G GFN+ G + Q S + +Y VS + GAA G +++GD+I
Sbjct: 10 EINLTRGPSGLGFNIVGGTDQ--QYVSNDSGIY-----VSRIKENGAAALDGRLQEGDKI 62
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L+VN +++ H+ V+L ++ G +SL V
Sbjct: 63 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 15 AKSDTGFGFNV---RGQVSEG-GQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
+ +G+ F V RG G G + ++ L AP ++ +L G A G + GDRI
Sbjct: 2 SSGSSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRI 61
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
L VN ++ G + + V+LI+ GG + V E A+++ HSG
Sbjct: 62 LEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI-----HSG 106
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+ + + +G GFN+ G + Q S + +Y VS + GAA G +++GD+I
Sbjct: 12 EINLTRGPSGLGFNIVGGTDQ--QYVSNDSGIY-----VSRIKENGAAALDGRLQEGDKI 64
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L+VN +++ H+ V+L ++ G +SL V
Sbjct: 65 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 95
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 12 VQIAKSDTGFGFNVRG-QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRIL 70
+ I S +GF++R +V G + ++Y V +V G A++AG+R GD I
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMG------DSDVYTVHHVVWSVEDGSPAQEAGLRAGDLIT 59
Query: 71 AVNNVNVEGATHKQVVELIKSGGDVLSL 98
+N +V G H VVEL+ G+ +SL
Sbjct: 60 HINGESVLGLVHMDVVELLLKSGNKISL 87
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S+ +G +A+S+ G GF++ G R+ + ++ VS + GGAA +AG
Sbjct: 2 SSGSSGRHVACLARSERGLGFSIAGGKGST-PYRAGDAGIF-----VSRIAEGGAAHRAG 55
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
++ GDR+L++N V+V A H V L+ + ++L
Sbjct: 56 TLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIAL 92
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 12 VQIAKSDTGFGFNVRG-QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRIL 70
+ I S +GF +R +V G + ++Y V V G A +AG++ GD I
Sbjct: 5 IVIHSSGKNYGFTIRAIRVYVG------DSDIYTVHHIVWNVEEGSPACQAGLKAGDLIT 58
Query: 71 AVNNVNVEGATHKQVVELIKSGGDVLSLT 99
+N V G H +V+EL+ G+ +S+T
Sbjct: 59 HINGEPVHGLVHTEVIELLLKSGNKVSIT 87
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 15/90 (16%)
Query: 3 STQQTGPRE--VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
S+ +G +E V + + ++GFGF + G E GQ P+ + AV+A G+A++
Sbjct: 2 SSGSSGYKELDVHLRRMESGFGFRILGG-DEPGQ----------PIL-IGAVIAMGSADR 49
Query: 61 AG-IRKGDRILAVNNVNVEGATHKQVVELI 89
G + GD ++ V+ + V G TH+ V++L+
Sbjct: 50 DGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+ + + +G GFN+ G + Q S + +Y VS + GAA G +++GD+I
Sbjct: 20 EINLTRGPSGLGFNIVGGTDQ--QYVSNDSGIY-----VSRIKENGAAALDGRLQEGDKI 72
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L+VN +++ H+ V+L ++ G +SL V
Sbjct: 73 LSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 103
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV + K FGF +RG + + P+ +++V GG A++ G I+ GDR+
Sbjct: 6 EVTLHKEGNTFGFVIRGGAHD-------DRNKSRPVV-ITSVRPGGPADREGTIKPGDRL 57
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L+V+ + + G TH + + ++K G +L +
Sbjct: 58 LSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 13/90 (14%)
Query: 5 QQTGPR-EVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
++ G R +Q+ K G GF++ + V+ GG AP+ +V +L GAA + G
Sbjct: 1 KRVGKRLNIQLKKGTEGLGFSITSRDVTIGGS---------API-YVKNILPRGAAIQDG 50
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKS 91
++ GDR++ VN V++ G + ++VV L++S
Sbjct: 51 RLKAGDRLIEVNGVDLAGKSQEEVVSLLRS 80
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 49 VSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S++ GG AE+ G I GDRILA+N+ +++G + + L++ G+ ++L +
Sbjct: 34 ISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKI 86
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI 89
+ ++L GG AE+ GIR G RI+ +N +V H +++EL+
Sbjct: 31 ICSLLRGGIAERGGIRVGHRIIEINGQSVVATPHARIIELL 71
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 49 VSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S V GAA + G +R G R+L VN ++ G TH + V+L++S GD L++ V
Sbjct: 48 ISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 1 MYSTQQTGP-REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
M +Q GP R+V + K D G G ++ G G P+ +S + G A
Sbjct: 1 MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHG-----------VPIL-ISEIHPGQPA 48
Query: 59 EK-AGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
++ G+ GD ILAVN VN+ HK+ V ++ + V+ V+ E
Sbjct: 49 DRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALE 97
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 14 IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVN 73
+ KS+ GFGF + G E LQ S + G AA+ + GD I+ +N
Sbjct: 25 LKKSNMGFGFTIIG-----------GDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73
Query: 74 NVNVEGATHKQVVELIKS 91
V V G TH VV+L +S
Sbjct: 74 EVCVLGHTHADVVKLFQS 91
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S++ GG A +A +R GD +L+++ +N +G TH + IK L++T+
Sbjct: 31 ISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTL 82
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 1 MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHV--SAVLAGGAA 58
M+S +Q ++V++ + EG ++ G + +P+ V SAV GGAA
Sbjct: 8 MFSPEQIAGKDVRLLRIK-----------KEGSLDLALEGGVDSPVGKVVVSAVYEGGAA 56
Query: 59 EK-AGIRKGDRILAVNNVNVEGATHKQVVELIK----SGGDVLSLTVISVSPEE 107
E+ G+ KGD I+A+N V T + ++ GGD + L V P+E
Sbjct: 57 ERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human
Membrane Associated Guanylate Kinase, C677s And C709s
Double Mutant
Length = 88
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 15/78 (19%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILA 71
V I K GFGF + GGQ V ++ + G+++GD I+
Sbjct: 7 VHIVKGPMGFGFTIADSPGGGGQ-------------RVKQIV--DSPRSRGLKEGDLIVE 51
Query: 72 VNNVNVEGATHKQVVELI 89
VN NV+ TH QVV+++
Sbjct: 52 VNKKNVQALTHNQVVDML 69
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 9 PREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKG 66
PR V+I + + G ++ G + +L+ NGE + + VL A K ++ G
Sbjct: 16 PRIVEIFREPNVSLGISIVGGQTVIKRLK--NGEELKGI-FIKQVLEDSPAGKTNALKTG 72
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
D+IL V+ V+++ A+H + VE IK+ G+ + V S+S
Sbjct: 73 DKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLS 110
>pdb|2VSV|A Chain A, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
pdb|2VSV|B Chain B, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
Length = 109
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
Q+ PR ++ + GF +RG AP+Q V + +A AG R+
Sbjct: 21 QSMPRSIRFTAEEGDLGFTLRGN---------------APVQ-VHFLDPYCSASVAGARE 64
Query: 66 GDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPE 106
GD I+++ V+ + T +V++L+KS G D + + V+S+ E
Sbjct: 65 GDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDE 106
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV + K FGF +RG + + P+ ++ V GG A++ G I+ GDR+
Sbjct: 109 EVTLHKEGNTFGFVIRGGAHD-------DRNKSRPVV-ITCVRPGGPADREGTIKPGDRL 160
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L+V+ + + G TH + + ++K G +L +
Sbjct: 161 LSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 14 IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAV 72
+ K T G V G + + G+ R VS + GG A ++ + GD I AV
Sbjct: 14 MKKEGTTLGLTVSGGIDKDGKPR------------VSNLRQGGIAARSDQLDVGDYIKAV 61
Query: 73 NNVNVEGATHKQVVELIKSGGDVLSLTV 100
N +N+ H +++ L+K+ G+ + L V
Sbjct: 62 NGINLAKFRHDEIISLLKNVGERVVLEV 89
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 5 QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
Q PR V++ + + G ++ G G +L NGE+ + + VL A K G
Sbjct: 21 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLS--NGEVMRGI-FIKHVLEDSPAGKNGT 77
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
++ GDRI+ V+ +++ A+H+Q VE I+ G+ + V S+
Sbjct: 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 118
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 12 VQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRIL 70
V++ KS G GF+VRG G + VS V G +AE+AG+ GD+I
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEHGLGI------------FVSKVEEGSSAERAGLCVGDKIT 61
Query: 71 AVNNVNVEGATHKQVVELIKS 91
VN +++E T V+++ S
Sbjct: 62 EVNGLSLESTTMGSAVKVLTS 82
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 19 TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNV 77
TGFG ++G V L S PL +S + A AE+ G+ + GDR++A+N +
Sbjct: 18 TGFGIQLQGSVFATETLSS------PPL--ISYIEADSPAERCGVLQIGDRVMAINGIPT 69
Query: 78 EGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISI 135
E +T ++ +L++ + S + + + AE + P SG + +K S+ + I
Sbjct: 70 EDSTFEEANQLLRDSS-ITSKVTLEIEFDVAESVIP---SSGTFHVKLPKKHSVELGI 123
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 49 VSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S + G A + G + GD++LA++N+ ++ + + V++++ D++ L +
Sbjct: 139 ISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
+S++ GG A +A +R GD +L+++ ++ +G TH + IK+ L++T+ S A
Sbjct: 33 ISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA--A 90
Query: 109 ERLEP 113
+ EP
Sbjct: 91 AKSEP 95
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K +GF+ L+++ G+ +++ + G A +AG+ D
Sbjct: 9 PRLCYLVKEGGSYGFS----------LKTVQGKKGV---YMTDITPQGVAMRAGVLADDH 55
Query: 69 ILAVNNVNVEGATHKQVVELI-KSGGDVLSLTV 100
++ VN NVE A+H++VVE + KSG V+ L V
Sbjct: 56 LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLV 88
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 19 TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNV 77
TGFG ++G V L S PL +S + A AE+ G+ + GDR++A+N +
Sbjct: 18 TGFGIQLQGSVFATETLSS------PPL--ISYIEADSPAERCGVLQIGDRVMAINGIPT 69
Query: 78 EGATHKQVVELIK 90
E +T ++ +L++
Sbjct: 70 EDSTFEEANQLLR 82
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 49 VSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
+S ++ GGAAEK+G + +GD +L +N + + G +V +L+ L+ +I S
Sbjct: 52 ISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS 108
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 49 VSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S + G AA+++ +R GD IL+VN ++ ATH Q V+ +K G + L V
Sbjct: 33 ISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEV 85
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse
Glutamate Receptor Interacting Protein 1a-L (Grip1)
Homolog
Length = 122
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 19 TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNV 77
TGFG ++G V L S PL +S + A AE+ G+ + GDR++A+N +
Sbjct: 27 TGFGIQLQGSVFATETLSS------PPL--ISYIEADSPAERCGVLQIGDRVMAINGIPT 78
Query: 78 EGATHKQVVELIK 90
E +T ++ +L++
Sbjct: 79 EDSTFEEANQLLR 91
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG 92
+ +++ GG AE+ G+R G RI+ +N +V H+++V ++ +
Sbjct: 35 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 78
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 36.6 bits (83), Expect = 0.021, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG 92
+ +++ GG AE+ G+R G RI+ +N +V H+++V ++ +
Sbjct: 26 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNA 69
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
+++ + + +TGFGF + G G + ++ ++ GAA+ G +R GD
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGEPI------------YIGHIVPLGAADTDGRLRSGDE 51
Query: 69 ILAVNNVNVEGATHKQVVELIKSGG 93
+++V+ V G +H+ VV+L++
Sbjct: 52 LISVDGTPVIGKSHQLVVQLMQQAA 76
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80
GF++ G + + + + +V+ V GG AE AG++ GD+I+ VN ++
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMV 88
Query: 81 THKQVVE-LIKSGGDVLSLTVISVSPEEA 108
TH Q + L K +V+ L V S ++A
Sbjct: 89 THDQARKRLTKRSEEVVRLLVTRQSLQKA 117
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80
GF++ G + + + + +V+ V GG AE AG++ GD+I+ VN ++
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMV 88
Query: 81 THKQVVE-LIKSGGDVLSLTVISVSPEEA 108
TH Q + L K +V+ L V S ++A
Sbjct: 89 THDQARKRLTKRSEEVVRLLVTRQSLQKA 117
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V++ K G ++ + G +Y VS V G A +AG+ GD+
Sbjct: 20 PRHVKVQKGSEPLGISI---------VSGEKGGIY-----VSKVTVGSIAHQAGLEYGDQ 65
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
+L N +N+ AT +Q +I D +++
Sbjct: 66 LLEFNGINLRSATEQQARLIIGQQCDTITI 95
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 39 NGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
+G + P +S V G + + G+ GD+I+ VN V+ HK+ V ++KS L++
Sbjct: 21 SGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTI 79
Query: 99 TVISVSPEE 107
++++ + E
Sbjct: 80 SIVAAAGRE 88
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 39 NGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
+G + P +S V G + + G+ GD+I+ VN V+ HK+ V ++KS L++
Sbjct: 35 SGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTI 93
Query: 99 TVISVSPEE 107
++++ + E
Sbjct: 94 SIVAAAGRE 102
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 16 KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNN 74
K G G ++ G+ ++ G VS ++ GG A+ G + +GD+IL VN
Sbjct: 13 KPGKGLGLSIVGKRNDTGVF-------------VSDIVKGGIADADGRLMQGDQILMVNG 59
Query: 75 VNVEGATHKQVVELIKSGGDVLSLTVISVS 104
+V AT + V L+K ++L V +S
Sbjct: 60 EDVRNATQEAVAALLKCSLGTVTLEVGRIS 89
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse Rhophilin-2
Length = 111
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + + GF +RG + P H SA LAG ++GD
Sbjct: 16 PRGIHFTVEEGDLGFTLRGNTP-------VQVHFLDP--HCSASLAGA-------KEGDY 59
Query: 69 ILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV 103
I+++ V+ + T +V++L+KS GG+ + + V+S+
Sbjct: 60 IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS 91
+ +++ GG AE+ G+R G RI+ +N +V H+++V ++ +
Sbjct: 116 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN 158
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 45 PLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG---ATHKQVVELIKSGGDVLSLTV 100
P ++ ++ GG AEK+G + GD+I+++N ++ G +T + +++ +K+ V L +
Sbjct: 29 PTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV-KLNI 87
Query: 101 ISVSPEEAERLEPPD 115
+ P + PD
Sbjct: 88 VRCPPVTTVLIRRPD 102
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE-LIKSGGDVLSLTVISVSPE 106
+V+ V GG AE AG++ GD+I+ VN ++ TH Q + L K +V+ L V S +
Sbjct: 67 YVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126
Query: 107 EA 108
+A
Sbjct: 127 KA 128
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S + G A ++ + +GD ++A++ VN + TH + IKS LSLT+
Sbjct: 36 ISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 87
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+S + G A ++ + +GD ++A++ VN + TH + IKS LSLT+
Sbjct: 29 ISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
PL +S + GG A +AG+ GD +L+++ N TH + I++ G+ LSL
Sbjct: 28 PLS-ISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSL 80
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 35.0 bits (79), Expect = 0.069, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80
GF++ G + + + + +V+ V GG AE AG++ GD+I+ VN ++
Sbjct: 30 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMV 89
Query: 81 THKQVVE-LIKSGGDVLSLTV 100
TH Q + L K +V+ L V
Sbjct: 90 THDQARKRLTKRSEEVVRLLV 110
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 35.0 bits (79), Expect = 0.069, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80
GF++ G + + + + +V+ V GG AE AG++ GD+I+ VN ++
Sbjct: 19 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMV 78
Query: 81 THKQVVE-LIKSGGDVLSLTV 100
TH Q + L K +V+ L V
Sbjct: 79 THDQARKRLTKRSEEVVRLLV 99
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 35.0 bits (79), Expect = 0.069, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80
GF++ G + + + + +V+ V GG AE AG++ GD+I+ VN ++
Sbjct: 21 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMV 80
Query: 81 THKQVVE-LIKSGGDVLSLTV 100
TH Q + L K +V+ L V
Sbjct: 81 THDQARKRLTKRSEEVVRLLV 101
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE-LIKSGGDVLSLTVISVSPE 106
+V+ V GG AE AG++ GD+I+ VN ++ TH Q + L K +V+ L V S +
Sbjct: 56 YVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 115
Query: 107 EA 108
+A
Sbjct: 116 KA 117
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 34.7 bits (78), Expect = 0.085, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRK 65
G R+V + K D G G ++ G G P+ +S + G A++ G+
Sbjct: 27 GIRKVLLLKEDHEGLGISITGGKEHG-----------VPIL-ISEIHPGQPADRCGGLHV 74
Query: 66 GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
GD ILAVN VN+ HK+ V ++ + V+ V
Sbjct: 75 GDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 112
>pdb|2F5Y|A Chain A, Crystal Structure Of The Pdz Domain From Human Rgs-3
pdb|2F5Y|B Chain B, Crystal Structure Of The Pdz Domain From Human Rgs-3
Length = 91
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 22/100 (22%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
R++ I + GFGF + +P++ V AV +GG AE+AG+++ D +
Sbjct: 5 RQITIPRGKDGFGFTICCD---------------SPVR-VQAVDSGGPAERAGLQQLDTV 48
Query: 70 LAVNNVNVEGATHKQVVEL---IKSGGDVLSLTVISVSPE 106
L +N VE H + VEL I+S + L V + P+
Sbjct: 49 LQLNERPVE---HWKCVELAHEIRSCPSEIILLVWRMVPQ 85
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 34.7 bits (78), Expect = 0.095, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE 78
G GF V+ +VS+ P +S ++ GGAAE++G I+ GD ILAVN+ +
Sbjct: 16 GLGFLVKERVSK-------------PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 62
Query: 79 GATHKQVVELIKSGGDVLSLTVISVSPE 106
++ +E+++ + +I PE
Sbjct: 63 DLSYDSALEVLRGIASETHVVLILRGPE 90
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 34.7 bits (78), Expect = 0.096, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE 78
G GF V+ +VS+ P +S ++ GGAAE++G I+ GD ILAVN+ +
Sbjct: 14 GLGFLVKERVSK-------------PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60
Query: 79 GATHKQVVELIKSGGDVLSLTVISVSPE 106
++ +E+++ + +I PE
Sbjct: 61 DLSYDSALEVLRGIASETHVVLILRGPE 88
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 34.7 bits (78), Expect = 0.100, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 8 GP-REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIR 64
GP R+V + K D G G ++ G G P+ +S + G A++ G+
Sbjct: 1 GPIRKVLLLKEDHEGLGISITGGKEHG-----------VPIL-ISEIHPGQPADRCGGLH 48
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
GD ILAVN VN+ HK+ V ++ + V+ V
Sbjct: 49 VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYV 87
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 48 HVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGD 94
+V +++ G AA G I D+IL V++VNV+G VVE++++ G+
Sbjct: 47 YVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGN 94
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 35 LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGD 94
R + G ++ +S V AG A A + GD I A+N + E TH + IK D
Sbjct: 22 FRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHD 81
Query: 95 VLSLTVIS 102
L+L+V S
Sbjct: 82 HLTLSVSS 89
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
V AV AGG+A + GD+IL +NN E + ++ V++++ D LS+TV+
Sbjct: 35 VVAVTAGGSAHGK-LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVV 86
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGD 94
GG AEKAG R GD I+ V+ V+G + V +L++ D
Sbjct: 109 GGPAEKAGARAGDVIVTVDGTAVKGXSLYDVSDLLQGEAD 148
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 35 LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGD 94
R + G ++ +S V AG A A + GD I A+N + E TH + IK D
Sbjct: 16 FRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHD 75
Query: 95 VLSLTVISVSPEEAE 109
L+L SVS E E
Sbjct: 76 HLTL---SVSRPEGE 87
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGD 94
GG AEKAG R GD I+ V+ V+G + V +L++ D
Sbjct: 109 GGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEAD 148
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ ++ G +G +Y + +++ GGA G I GD +L VN+VN E
Sbjct: 15 LGISIVGQSNDRG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDVNFEN 64
Query: 80 ATHKQVVELIK---SGGDVLSLTV 100
++ V +++ S +SLTV
Sbjct: 65 MSNDDAVRVLREIVSQTGPISLTV 88
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 43 YAPLQH---VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA--------THKQVVELIKS 91
+ +QH + V+ G A +AG+R GD ILA+ V+ A T Q+ I+
Sbjct: 30 FPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIRR 89
Query: 92 GGDVLSLTVISVSPEEAE 109
G + L+L V+PE E
Sbjct: 90 GRETLTL---YVTPEVTE 104
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
++I+K TG G ++ G + L A + H V GAA K G + GD+IL
Sbjct: 8 IEISKGRTGLGLSIVG---------GSDTLLGAIIIH--EVYEEGAACKDGRLWAGDQIL 56
Query: 71 AVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERL 111
VN +++ ATH + + +++ + LT+ +P ++ RL
Sbjct: 57 EVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTRL 98
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + +++ GGA G I GD +L VN++N E
Sbjct: 19 LGISIVGQSNERG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 69 MSNDDAVRVLR 79
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + +++ GGA G I GD +L VN++N E
Sbjct: 19 LGISIVGQSNERG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 69 MSNDDAVRVLR 79
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + +++ GGA G I GD +L VN++N E
Sbjct: 19 LGISIVGQSNERG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 69 MSNDDAVRVLR 79
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + +++ GGA G I GD +L VN++N E
Sbjct: 19 LGISIVGQSNERG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 69 MSNDDAVRVLR 79
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + +++ GGA G I GD +L VN++N E
Sbjct: 19 LGISIVGQSNERG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 69 MSNDDAVRVLR 79
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ ++ G +G +Y + +++ GGA G I GD +L VN+VN E
Sbjct: 12 LGISIVGQSNDRG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVNDVNFEN 61
Query: 80 ATHKQVVELIK---SGGDVLSLTV 100
++ V +++ S +SLTV
Sbjct: 62 MSNDDAVRVLREIVSQTGPISLTV 85
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 52 VLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS 91
V +G AA++ G++ DRI+ VN ++ ATH Q VE K+
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT 88
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 10 REVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGD 67
R V + K+D G G +++G E P+ +S + G AA++ + GD
Sbjct: 6 RRVTVRKADAGGLGISIKG-----------GRENKMPIL-ISKIFKGLAADQTEALFVGD 53
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
IL+VN ++ ATH + V+ +K G + L V
Sbjct: 54 AILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 10 REVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGD 67
R V + K+D G G +++G E P+ +S + G AA++ + GD
Sbjct: 2 RRVTVRKADAGGLGISIKG-----------GRENKMPIL-ISKIFKGLAADQTEALFVGD 49
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
IL+VN ++ ATH + V+ +K G + L V
Sbjct: 50 AILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|3SOE|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of The Human
Membrane- Associated Guanylate Kinase, Ww And Pdz
Domain-Containing Protein 3 (Magi3)
Length = 113
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIKS---GGDV 95
G++KGD I + + NV+ TH QVVE++K G DV
Sbjct: 49 GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADV 85
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + ++ GGA G I GD +L VN++N E
Sbjct: 13 LGISIVGQSNERG-----DGGIY-----IGSIXKGGAVAADGRIEPGDXLLQVNDINFEN 62
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 63 XSNDDAVRVLR 73
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 10 REVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGD 67
R V + K+D G G +++G E P+ +S + G AA++ + GD
Sbjct: 2 RRVTVRKADAGGLGISIKG-----------GRENKMPIL-ISKIFKGLAADQTEALFVGD 49
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
IL+VN ++ ATH + V+ +K G + L V
Sbjct: 50 AILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + ++ GGA G I GD +L VN++N E
Sbjct: 15 LGISIVGQSNERG-----DGGIY-----IGSIXKGGAVAADGRIEPGDXLLQVNDINFEN 64
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 65 XSNDDAVRVLR 75
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 43 YAPLQH---VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA--------THKQVVELIKS 91
+ +QH + V+ G A +AG+R GD ILA+ V+ A T Q+ I+
Sbjct: 251 FPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAVQIRR 310
Query: 92 GGDVLSLTVISVSPEEAE 109
G + L+L V+PE E
Sbjct: 311 GRETLTL---YVTPEVTE 325
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 32.0 bits (71), Expect = 0.55, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79
G ++ GQ +E G +G +Y + ++ GGA G I GD +L VN++N E
Sbjct: 15 LGISIVGQSNERG-----DGGIY-----IGSIXKGGAVAADGRIEPGDXLLQVNDINFEN 64
Query: 80 ATHKQVVELIK 90
++ V +++
Sbjct: 65 XSNDDAVRVLR 75
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 39 NGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS 91
G Y +++ V G AE +G++ GD+IL VN + H + V L+KS
Sbjct: 40 GGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
>pdb|1WHD|A Chain A, Solution Structure Of The Pdz Domain Of Rgs3
Length = 100
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRIL 70
++ I + GFGF + +P++ V AV +GG AE+AG+++ D +L
Sbjct: 18 QITIRRGKDGFGFTICCD---------------SPVR-VQAVDSGGPAERAGLQQLDTVL 61
Query: 71 AVNNVNVEGATHKQVVEL 88
+N VE H + VEL
Sbjct: 62 QLNERPVE---HWKCVEL 76
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS--VSPEEAERLE 112
G A+++ I+KG+ +L++N +++G TH + +++ + +++ ++PE L
Sbjct: 53 GLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 112
Query: 113 PPDDHSG 119
SG
Sbjct: 113 SSGPSSG 119
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 35 LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGD 94
R + G+ + +S V G A A + GD I A++ N TH + IK D
Sbjct: 17 FRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTD 76
Query: 95 VLSLTV 100
L+LTV
Sbjct: 77 NLTLTV 82
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PREV + K G G +L+SI+ ++ L V A A G+R GD+
Sbjct: 5 PREVILCKDQDG---------KIGLRLKSIDNGIFVQL-----VQANSPASLVGLRFGDQ 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSG-GDVLSLTV 100
+L +N N G + + +++K G+ +++T+
Sbjct: 51 VLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 17/74 (22%)
Query: 182 EKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKIL----LPDREVITVSVRKSATA 237
EK CA+ +A+D++G N S V I++L L DRE+ T ++ +++TA
Sbjct: 883 EKWCAI------------TPEAMDKSGANYDSKV-IRLLELSFLADREMNTWALLRASTA 929
Query: 238 DEVYASAVPKLYLQ 251
++Y PK Q
Sbjct: 930 FKLYYHKSPKFVWQ 943
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 14/73 (19%)
Query: 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE 78
G GF V+ +VS+ P +S ++ GGAAE++G I+ GD ILAVN+ +
Sbjct: 21 GLGFLVKERVSK-------------PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 67
Query: 79 GATHKQVVELIKS 91
++ +E+++
Sbjct: 68 DLSYDSALEVLRG 80
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86
V+ VL A K G+ +GD+IL VNNV+ ++ V
Sbjct: 55 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 92
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 14/66 (21%)
Query: 12 VQIAKSDTG---FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ I KSDT +GF++ V E G R LY V++V G A K G++ GD
Sbjct: 10 IHIEKSDTAADTYGFSLS-SVEEDGIRR-----LY-----VNSVKETGLASKKGLKAGDE 58
Query: 69 ILAVNN 74
IL +NN
Sbjct: 59 ILEINN 64
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86
V+ VL A K G+ +GD+IL VNNV+ ++ V
Sbjct: 30 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 67
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 41 ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ + P+ V+ V G A+ A +R GD I+A+N + EG H + I+ L L +
Sbjct: 23 DFHTPIM-VTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 81
Query: 101 ISVS 104
++
Sbjct: 82 DRIT 85
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 10 REVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGD 67
R V + K+D G G +++G E P+ +S + G AA++ + GD
Sbjct: 79 RRVTVRKADAGGLGISIKG-----------GRENKMPI-LISKIFKGLAADQTEALFVGD 126
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
IL+VN ++ ATH + V+ +K G + L V
Sbjct: 127 AILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 10 REVQIAKSDTG---FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
+ + I KSDT +GF++ V E G R LY V++V G A K G++ G
Sbjct: 17 QSIHIEKSDTAADTYGFSLS-SVEEDGIRR-----LY-----VNSVKETGLASKKGLKAG 65
Query: 67 DRILAVNN 74
D IL +NN
Sbjct: 66 DEILEINN 73
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86
V+ VL A K G+ +GD+IL VNNV+ ++ V
Sbjct: 27 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 64
>pdb|1M5Z|A Chain A, The Pdz7 Of Glutamate Receptor Interacting Protein Binds
To Its Target Via A Novel Hydrophobic Surface Area
Length = 91
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 9 PREVQIAK----SDTG---FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
P V++ K D+G FGF+V + E G +V + G +
Sbjct: 2 PTPVELHKVTLYKDSGMEDFGFSVADGLLEKGV-------------YVKNIRPAGPGDLG 48
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
G++ DR+L VN+V VV LI G+ L L VIS +P
Sbjct: 49 GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL-VISRNP 91
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 41 ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ + P+ V+ V G A+ A +R GD I+A+N + EG H + I+ L L +
Sbjct: 22 DFHTPIM-VTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 80
>pdb|1GQP|A Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
pdb|1GQP|B Chain B, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
Length = 221
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 203 ALDEN-----GTNISSPVDIKILLPDR-EVITVSVRKSATADEVYASAVPKLYL-QSPSS 255
ALD+N ++ P + I+ R ++ +++ S ADE YA ++ K+Y SPS
Sbjct: 75 ALDDNYDTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSD 134
Query: 256 AAYFYLFEI 264
A ++ + E+
Sbjct: 135 ARFYKMLEV 143
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSG 92
++ GDRIL++N +V +T + V++LIK
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEA 85
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 190 IAESELMQEFLTDALDENG--TNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPK 247
+ E+++ L + D N TN ++P+ + L E++ V ++ A + A+ +
Sbjct: 45 VGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITP 104
Query: 248 LYLQSPSSAAYFYLFEIVE 266
LYL AAY+ EIVE
Sbjct: 105 LYL-----AAYWGHLEIVE 118
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
V++ K G GF++ RS+ + +++A G AE++G + GDR++
Sbjct: 19 VELVKDCKGLGFSILDYQDPLDPTRSV--------IVIRSLVADGVAERSGGLLPGDRLV 70
Query: 71 AVNNVNVEGATHKQVVELIKS 91
+VN ++ + + VE++K+
Sbjct: 71 SVNEYCLDNTSLAEAVEILKA 91
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86
V+ VL A K G+ +GD+IL VNNV+ ++ V
Sbjct: 35 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 72
>pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin
9
pdb|2RAK|A Chain A, Pi(3)p Bound Px-Bar Membrane Remodeling Unit Of Sorting
Nexin 9
Length = 392
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200
R E+ + R L+ ++ ++C VI+ESE+ Q+FL
Sbjct: 115 RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFL 151
>pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|B Chain B, Crystal Structure Of Snx9px-Bar (230-595), H32
pdb|3DYU|C Chain C, Crystal Structure Of Snx9px-Bar (230-595), H32
Length = 366
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200
R E+ + R L+ ++ ++C VI+ESE+ Q+FL
Sbjct: 89 RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFL 125
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86
V+ VL A K G+ +GD+IL VNNV+ ++ V
Sbjct: 28 VAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 65
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
++ + G A A + GD ILA++ E TH + IK+ L L + + A
Sbjct: 33 ITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI-----DRA 87
Query: 109 E-RLEPPDDHSG 119
E RL P SG
Sbjct: 88 ETRLWSPQVSSG 99
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 15/93 (16%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PREV + K G G +L+SI+ ++ L V A A G+R GD+
Sbjct: 5 PREVILCKDQDG---------KIGLRLKSIDNGIFVQL-----VQANSPASLVGLRFGDQ 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSG-GDVLSLTV 100
+L +N N G + + +++K G+ ++ T+
Sbjct: 51 VLQINGENCAGWSSDKAHKVLKQAFGEKITXTI 83
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 182 EKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVY 241
EK+ +A ++++ + + D NG + P +++ L + ++ + S A +
Sbjct: 137 EKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN 196
Query: 242 ASAVPKL----------YLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS 291
+ KL + A YL ++ + + +E K H I S
Sbjct: 197 ELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVENKSKIPHGRIVTMKRNS 256
Query: 292 ATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAI----DAVDRGQ 333
I+ +LF A +E S D R+ + +A+ D V RG+
Sbjct: 257 RNLEEIKPYLFRA-IEESYYKLDKRIPKAIHVVAVTEDLDIVSRGR 301
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Magi-2)
Length = 96
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIK 90
G+ +GD I+ +N NV+ +H +VV+++K
Sbjct: 47 GLCEGDLIVEINQQNVQNLSHTEVVDILK 75
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 37 SINGELYAPL---QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGG 93
+I+ E+ PL + + + AA + +KGDR++ ++++ G T + +E ++S G
Sbjct: 333 AISNEMNVPLIYPRREAKIYGTKAAIEGEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAG 392
Query: 94 -DVLSLTVI 101
+V+S+ V+
Sbjct: 393 LEVVSIVVL 401
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 52 VLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
+L GG A + G + DR+LA+N +++ T + ++I++ G+ ++LT+ E E
Sbjct: 36 LLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPEIE 94
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR--KGDRILAVNNVNVE 78
FGFNV+G + ++ I VS V G A+ R +GD+++ +N ++
Sbjct: 31 FGFNVKGGYDQ--KMPVI----------VSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 78
Query: 79 GATHKQVVELIKS 91
TH QVV IK+
Sbjct: 79 EHTHDQVVLFIKA 91
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 5 QQTGPREVQI-AKSDTGFGFNVRGQVS-EGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
+ +E+++ + D GF++ G V G R + ++ V+ V G A K
Sbjct: 6 HELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL- 59
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
++ GD+I+ N + H Q V L+K+ + + L ++
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 28.5 bits (62), Expect = 7.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR--KGDRILAVNNVNVE 78
FGFNV+G + ++ I VS V G A+ R +GD+++ +N ++
Sbjct: 18 FGFNVKGGYDQ--KMPVI----------VSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 65
Query: 79 GATHKQVVELIKS 91
TH QVV IK+
Sbjct: 66 EHTHDQVVLFIKA 78
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR--KGDRILAVNNVNVE 78
FGFNV+G + ++ I VS V G A+ R +GD+++ +N ++
Sbjct: 29 FGFNVKGGYDQ--KMPVI----------VSRVAPGTPADLCVPRLNEGDQVVLINGRDIA 76
Query: 79 GATHKQVVELIKS 91
TH QVV IK+
Sbjct: 77 EHTHDQVVLFIKA 89
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
++I+K +G G ++ G G+ +N + + V GAA + G + GD+IL
Sbjct: 21 IEISKGRSGLGLSIVG-----GKDTPLNAIV------IHEVYEEGAAARDGRLWAGDQIL 69
Query: 71 AVNNVNVEGATHKQVVELIK 90
VN V++ ++H++ + ++
Sbjct: 70 EVNGVDLRNSSHEEAITALR 89
>pdb|3CM1|A Chain A, Crystal Structure Of Ssga-Like Sporulation-Specific Cell
Division Protein (Yp_290167.1) From Thermobifida Fusca
Yx-Er1 At 2.60 A Resolution
pdb|3CM1|B Chain B, Crystal Structure Of Ssga-Like Sporulation-Specific Cell
Division Protein (Yp_290167.1) From Thermobifida Fusca
Yx-Er1 At 2.60 A Resolution
pdb|3CM1|C Chain C, Crystal Structure Of Ssga-Like Sporulation-Specific Cell
Division Protein (Yp_290167.1) From Thermobifida Fusca
Yx-Er1 At 2.60 A Resolution
Length = 139
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 207 NGTNISSPVDIKILLPDREVITVSVRKSATADEVYA 242
+GT+I+ V +++++PDR + + R + D+ YA
Sbjct: 5 SGTSITCEVGLQLIVPDRAPVPLVARLDYSVDDPYA 40
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRIL 70
V + K G GF++ EGG+ S++G+ PL ++ + G A+E++ ++ GD IL
Sbjct: 33 VTLEKMSAGLGFSL-----EGGK-GSLHGD--KPLT-INRIFKGAASEQSETVQPGDEIL 83
Query: 71 AVNNVNVEGATHKQVVELIKS 91
+ ++G T + +IK+
Sbjct: 84 QLGGTAMQGLTRFEAWNIIKA 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,639,553
Number of Sequences: 62578
Number of extensions: 425996
Number of successful extensions: 1452
Number of sequences better than 100.0: 229
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 237
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)