Query psy2827
Match_columns 373
No_of_seqs 391 out of 1995
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 17:55:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3784|consensus 100.0 4.3E-44 9.3E-49 340.2 16.3 208 144-361 13-256 (407)
2 KOG3552|consensus 99.9 1.9E-26 4.2E-31 236.2 6.0 256 8-350 55-320 (1298)
3 cd01777 SNX27_RA Ubiquitin dom 99.9 2.2E-25 4.7E-30 170.9 8.6 86 214-300 1-87 (87)
4 PRK10779 zinc metallopeptidase 99.9 3.1E-24 6.8E-29 217.2 3.9 231 9-265 176-446 (449)
5 TIGR00054 RIP metalloprotease 99.9 6.6E-24 1.4E-28 213.0 0.7 192 47-266 205-418 (420)
6 PF00595 PDZ: PDZ domain (Also 99.4 8.8E-12 1.9E-16 96.5 10.9 80 11-101 1-81 (81)
7 smart00295 B41 Band 4.1 homolo 99.2 1.1E-10 2.4E-15 105.6 11.1 133 213-355 2-137 (207)
8 cd00992 PDZ_signaling PDZ doma 99.1 2.5E-09 5.3E-14 82.3 12.0 80 9-100 1-81 (82)
9 KOG3550|consensus 99.0 1.1E-09 2.3E-14 92.3 8.4 92 3-107 85-177 (207)
10 COG0750 Predicted membrane-ass 99.0 7.5E-11 1.6E-15 116.9 0.9 193 48-266 132-371 (375)
11 cd00136 PDZ PDZ domain, also c 99.0 5.8E-09 1.3E-13 77.9 10.2 67 20-100 2-69 (70)
12 PF13180 PDZ_2: PDZ domain; PD 99.0 6.7E-09 1.5E-13 80.5 10.2 59 46-106 15-75 (82)
13 KOG3209|consensus 98.9 3.6E-09 7.7E-14 108.0 9.3 86 5-102 895-981 (984)
14 smart00228 PDZ Domain present 98.9 2.8E-08 6.1E-13 76.6 12.4 81 10-102 3-83 (85)
15 KOG3209|consensus 98.9 4.2E-09 9.1E-14 107.5 9.1 86 4-102 749-836 (984)
16 KOG3549|consensus 98.9 3.8E-09 8.2E-14 100.1 8.0 87 3-101 49-137 (505)
17 cd00988 PDZ_CTP_protease PDZ d 98.7 1E-07 2.3E-12 73.9 9.2 57 47-103 15-72 (85)
18 cd00991 PDZ_archaeal_metallopr 98.7 1.8E-07 3.9E-12 72.0 9.3 58 45-104 10-69 (79)
19 cd00989 PDZ_metalloprotease PD 98.7 2E-07 4.3E-12 71.2 9.4 56 47-104 14-70 (79)
20 cd06886 PX_SNX27 The phosphoin 98.4 2.9E-07 6.3E-12 75.1 5.3 73 130-202 3-105 (106)
21 KOG3651|consensus 98.4 8.3E-07 1.8E-11 83.0 8.8 84 8-103 4-89 (429)
22 cd00990 PDZ_glycyl_aminopeptid 98.4 1.4E-06 3E-11 66.8 8.8 56 46-104 13-68 (80)
23 KOG3551|consensus 98.4 4.2E-07 9.2E-12 87.5 5.8 81 9-101 85-167 (506)
24 cd00986 PDZ_LON_protease PDZ d 98.4 2.3E-06 4.9E-11 65.7 8.7 56 46-104 9-66 (79)
25 cd00987 PDZ_serine_protease PD 98.4 2.4E-06 5.2E-11 66.7 9.0 57 46-104 25-83 (90)
26 PRK10139 serine endoprotease; 98.4 3.7E-06 8.1E-11 85.6 12.5 95 8-104 339-447 (455)
27 KOG3553|consensus 98.3 1.3E-06 2.7E-11 68.9 6.3 69 21-91 37-105 (124)
28 PLN00049 carboxyl-terminal pro 98.2 9.5E-06 2.1E-10 81.1 10.1 59 46-104 103-162 (389)
29 KOG3580|consensus 98.2 4.3E-06 9.4E-11 84.5 7.4 87 9-102 9-96 (1027)
30 TIGR00225 prc C-terminal pepti 98.1 9.3E-06 2E-10 79.5 9.3 58 47-104 64-122 (334)
31 PRK10779 zinc metallopeptidase 98.1 9.5E-06 2.1E-10 82.7 8.1 56 48-105 129-186 (449)
32 PF04495 GRASP55_65: GRASP55/6 98.1 3.8E-05 8.3E-10 65.5 10.1 86 7-103 9-101 (138)
33 TIGR02037 degP_htrA_DO peripla 98.0 4.4E-05 9.6E-10 77.3 12.2 59 45-105 362-422 (428)
34 PRK10942 serine endoprotease; 98.0 4.9E-05 1.1E-09 77.9 12.6 96 7-104 359-465 (473)
35 KOG1892|consensus 98.0 1.3E-05 2.9E-10 84.6 8.4 82 10-101 935-1017(1629)
36 TIGR02037 degP_htrA_DO peripla 98.0 1.9E-05 4.1E-10 80.0 9.1 59 45-105 257-317 (428)
37 TIGR01713 typeII_sec_gspC gene 98.0 2.8E-05 6.1E-10 73.4 8.7 58 46-105 192-251 (259)
38 COG0793 Prc Periplasmic protea 98.0 2.9E-05 6.3E-10 77.9 9.2 57 47-103 114-171 (406)
39 PRK10139 serine endoprotease; 98.0 2.9E-05 6.2E-10 79.2 9.1 58 46-105 291-350 (455)
40 KOG3605|consensus 97.9 2.5E-05 5.5E-10 79.8 7.7 136 10-158 647-786 (829)
41 TIGR02038 protease_degS peripl 97.9 4.4E-05 9.4E-10 75.4 8.4 58 45-104 278-337 (351)
42 PRK10898 serine endoprotease; 97.9 5.5E-05 1.2E-09 74.7 8.9 58 45-104 279-338 (353)
43 TIGR02860 spore_IV_B stage IV 97.9 7.4E-05 1.6E-09 74.2 9.6 72 55-128 123-196 (402)
44 PRK10942 serine endoprotease; 97.8 6.5E-05 1.4E-09 77.0 9.1 59 45-105 311-371 (473)
45 TIGR03279 cyano_FeS_chp putati 97.8 4.6E-05 1E-09 76.1 7.6 49 49-101 2-50 (433)
46 KOG3606|consensus 97.8 5.3E-05 1.1E-09 70.1 7.3 93 9-104 159-254 (358)
47 PRK11186 carboxy-terminal prot 97.8 4.9E-05 1.1E-09 80.4 7.2 57 47-103 257-320 (667)
48 cd06885 PX_SNX17_31 The phosph 97.8 5.8E-05 1.3E-09 61.3 6.0 69 135-203 4-103 (104)
49 KOG3580|consensus 97.7 9.4E-05 2E-09 75.1 7.2 77 10-101 409-487 (1027)
50 KOG3129|consensus 97.7 0.00016 3.5E-09 64.7 7.9 82 44-126 138-221 (231)
51 KOG0606|consensus 97.6 0.00018 3.8E-09 78.0 7.6 84 11-101 629-714 (1205)
52 TIGR00054 RIP metalloprotease 97.5 0.00021 4.6E-09 72.2 7.5 58 45-104 128-185 (420)
53 KOG3571|consensus 97.5 0.00029 6.2E-09 70.4 7.9 83 11-103 252-339 (626)
54 KOG3542|consensus 97.5 0.0002 4.3E-09 73.7 6.6 83 6-101 533-617 (1283)
55 cd01768 RA RA (Ras-associating 97.3 0.00069 1.5E-08 52.9 6.1 81 217-300 2-87 (87)
56 KOG0609|consensus 96.9 0.0039 8.4E-08 63.3 8.7 81 8-102 122-204 (542)
57 PF00373 FERM_M: FERM central 96.9 0.0016 3.5E-08 53.9 5.2 45 311-356 5-50 (126)
58 smart00314 RA Ras association 96.9 0.0044 9.6E-08 48.6 7.3 75 222-299 13-88 (90)
59 KOG3938|consensus 96.9 0.0018 3.9E-08 60.0 5.7 86 3-102 121-209 (334)
60 KOG3605|consensus 96.9 0.0013 2.7E-08 67.8 5.0 69 5-92 732-803 (829)
61 PF00788 RA: Ras association ( 96.8 0.0032 6.8E-08 49.3 6.1 83 215-300 3-91 (93)
62 COG0265 DegQ Trypsin-like seri 96.8 0.0054 1.2E-07 60.3 8.6 59 45-105 270-330 (347)
63 PF14685 Tricorn_PDZ: Tricorn 96.7 0.0037 8E-08 49.1 5.6 47 55-103 30-79 (88)
64 cd06862 PX_SNX9_18_like The ph 96.6 0.0029 6.3E-08 53.1 4.7 38 166-203 70-107 (125)
65 COG3480 SdrC Predicted secrete 96.5 0.0082 1.8E-07 57.3 7.2 79 46-128 131-214 (342)
66 cd07301 PX_SNX21 The phosphoin 96.4 0.0059 1.3E-07 50.2 5.2 37 165-201 74-110 (112)
67 cd07279 PX_SNX20_21_like The p 96.4 0.0063 1.4E-07 50.0 5.1 37 165-201 74-110 (112)
68 KOG3530|consensus 96.3 0.019 4.1E-07 58.9 9.1 144 212-365 8-152 (616)
69 cd07300 PX_SNX20 The phosphoin 96.3 0.007 1.5E-07 50.0 5.0 38 165-202 74-111 (114)
70 cd06867 PX_SNX41_42 The phosph 96.3 0.0057 1.2E-07 50.2 4.4 33 169-201 78-110 (112)
71 cd06870 PX_CISK The phosphoino 95.9 0.014 3.1E-07 47.6 4.9 37 166-202 72-108 (109)
72 cd06877 PX_SNX14 The phosphoin 95.7 0.012 2.5E-07 49.0 3.9 37 165-201 81-117 (119)
73 PRK09681 putative type II secr 95.7 0.027 5.8E-07 53.5 6.6 54 51-106 210-268 (276)
74 COG3975 Predicted protease wit 95.5 0.029 6.2E-07 57.1 6.4 48 47-102 464-511 (558)
75 PF09379 FERM_N: FERM N-termin 95.5 0.041 8.9E-07 41.8 5.8 79 219-302 1-79 (80)
76 cd06872 PX_SNX19_like_plant Th 95.4 0.016 3.5E-07 47.2 3.5 35 167-201 71-105 (107)
77 cd07280 PX_YPT35 The phosphoin 95.4 0.031 6.8E-07 46.4 5.3 35 167-201 85-119 (120)
78 cd06861 PX_Vps5p The phosphoin 95.4 0.02 4.4E-07 47.0 4.0 36 166-201 75-110 (112)
79 COG3031 PulC Type II secretory 95.2 0.098 2.1E-06 48.2 8.0 50 55-106 217-268 (275)
80 KOG3532|consensus 95.0 0.062 1.3E-06 56.0 7.0 53 47-101 400-452 (1051)
81 cd06866 PX_SNX8_Mvp1p_like The 95.0 0.032 6.9E-07 45.3 4.0 35 167-201 69-103 (105)
82 cd01787 GRB7_RA RA (RAS-associ 94.8 0.051 1.1E-06 42.2 4.4 82 214-299 2-84 (85)
83 cd06893 PX_SNX19 The phosphoin 94.7 0.029 6.3E-07 47.5 3.2 35 168-202 97-131 (132)
84 cd01784 rasfadin_RA Ubiquitin- 94.5 0.11 2.3E-06 40.4 5.6 61 219-281 6-67 (87)
85 KOG1421|consensus 94.4 0.095 2.1E-06 54.8 6.7 55 48-105 306-361 (955)
86 KOG1320|consensus 94.4 0.098 2.1E-06 53.2 6.7 54 46-101 399-454 (473)
87 cd07281 PX_SNX1 The phosphoino 94.4 0.031 6.8E-07 46.7 2.7 32 170-201 91-122 (124)
88 cd06873 PX_SNX13 The phosphoin 94.3 0.082 1.8E-06 43.9 5.1 38 165-202 78-115 (120)
89 cd06898 PX_SNX10 The phosphoin 94.2 0.036 7.8E-07 45.6 2.7 34 168-201 78-111 (113)
90 cd06879 PX_UP1_plant The phosp 94.2 0.045 9.8E-07 46.5 3.2 35 167-201 102-136 (138)
91 cd07295 PX_Grd19 The phosphoin 94.0 0.051 1.1E-06 44.9 3.3 37 166-202 76-113 (116)
92 cd06864 PX_SNX4 The phosphoino 93.9 0.048 1E-06 46.0 2.9 35 167-201 93-127 (129)
93 cd06868 PX_HS1BP3 The phosphoi 93.8 0.063 1.4E-06 44.7 3.4 35 168-202 85-119 (120)
94 cd07286 PX_SNX18 The phosphoin 93.8 0.11 2.3E-06 43.8 4.7 37 166-202 70-106 (127)
95 cd06163 S2P-M50_PDZ_RseP-like 93.7 0.0013 2.9E-08 58.8 -7.2 59 199-265 115-180 (182)
96 cd06878 PX_SNX25 The phosphoin 93.7 0.06 1.3E-06 45.3 3.1 36 166-201 90-125 (127)
97 cd06881 PX_SNX15_like The phos 93.7 0.07 1.5E-06 44.1 3.4 37 166-202 80-116 (117)
98 cd07282 PX_SNX2 The phosphoino 93.3 0.063 1.4E-06 44.9 2.6 32 170-201 91-122 (124)
99 PF12812 PDZ_1: PDZ-like domai 93.2 0.27 5.9E-06 37.6 5.7 42 48-91 33-74 (78)
100 cd06897 PX_SNARE The phosphoin 93.1 0.091 2E-06 42.6 3.2 36 166-201 69-106 (108)
101 cd01782 AF6_RA_repeat1 Ubiquit 93.0 0.49 1.1E-05 38.3 7.1 62 223-286 31-96 (112)
102 cd07293 PX_SNX3 The phosphoino 92.7 0.081 1.8E-06 44.2 2.3 36 166-201 84-119 (123)
103 cd01778 RASSF1_RA Ubiquitin-li 92.6 0.57 1.2E-05 37.2 6.8 62 218-281 10-74 (96)
104 cd06865 PX_SNX_like The phosph 92.3 0.1 2.2E-06 43.4 2.5 35 168-202 85-119 (120)
105 cd06860 PX_SNX7_30_like The ph 92.2 0.12 2.5E-06 42.8 2.7 36 166-201 79-114 (116)
106 KOG2527|consensus 92.2 0.14 3.1E-06 42.8 3.2 34 170-203 97-130 (144)
107 cd07288 PX_SNX15 The phosphoin 92.2 0.13 2.8E-06 42.7 2.9 34 168-201 83-116 (118)
108 KOG4407|consensus 92.0 0.24 5.1E-06 55.3 5.4 52 48-99 146-197 (1973)
109 cd07285 PX_SNX9 The phosphoino 92.0 0.11 2.4E-06 43.5 2.4 35 169-203 74-108 (126)
110 cd06863 PX_Atg24p The phosphoi 91.7 0.13 2.8E-06 42.5 2.4 36 166-201 81-116 (118)
111 cd07287 PX_RPK118_like The pho 91.6 0.18 3.9E-06 41.8 3.2 36 166-201 81-116 (118)
112 cd07276 PX_SNX16 The phosphoin 91.5 0.21 4.5E-06 40.8 3.4 36 167-202 74-109 (110)
113 cd07283 PX_SNX30 The phosphoin 91.4 0.17 3.7E-06 41.8 2.9 34 168-201 81-114 (116)
114 cd07294 PX_SNX12 The phosphoin 91.4 0.14 3.1E-06 43.3 2.4 35 169-203 89-123 (132)
115 cd06869 PX_UP2_fungi The phosp 91.3 0.17 3.7E-06 42.0 2.7 31 171-201 87-117 (119)
116 cd06894 PX_SNX3_like The phosp 90.9 0.18 4E-06 42.1 2.6 36 167-202 85-120 (123)
117 cd06871 PX_MONaKA The phosphoi 90.9 0.22 4.8E-06 41.4 3.0 37 167-203 74-110 (120)
118 smart00455 RBD Raf-like Ras-bi 90.7 0.38 8.2E-06 36.0 3.9 34 217-250 2-35 (70)
119 cd07284 PX_SNX7 The phosphoino 90.7 0.2 4.4E-06 41.4 2.6 33 169-201 82-114 (116)
120 cd06859 PX_SNX1_2_like The pho 90.6 0.16 3.6E-06 41.5 2.0 32 170-201 81-112 (114)
121 KOG1738|consensus 90.6 0.45 9.8E-06 49.5 5.5 71 17-101 211-282 (638)
122 cd06876 PX_MDM1p The phosphoin 90.3 0.22 4.8E-06 42.1 2.6 32 170-201 101-132 (133)
123 cd06880 PX_SNX22 The phosphoin 90.1 0.57 1.2E-05 38.3 4.8 36 166-203 67-102 (110)
124 smart00312 PX PhoX homologous 90.1 0.31 6.6E-06 38.8 3.2 34 167-200 70-104 (105)
125 PF02196 RBD: Raf-like Ras-bin 89.9 0.39 8.5E-06 36.1 3.4 34 217-250 3-36 (71)
126 cd06875 PX_IRAS The phosphoino 89.7 0.34 7.4E-06 40.0 3.2 37 167-203 69-105 (116)
127 KOG3834|consensus 89.2 0.85 1.9E-05 45.5 6.0 79 48-128 18-99 (462)
128 cd01760 RBD Ubiquitin-like dom 89.0 0.6 1.3E-05 35.2 3.8 34 217-250 2-35 (72)
129 KOG3834|consensus 88.7 1.5 3.3E-05 43.8 7.4 86 6-102 75-166 (462)
130 KOG4257|consensus 88.5 0.62 1.3E-05 48.9 4.7 128 217-349 5-149 (974)
131 PF00787 PX: PX domain; Inter 85.8 0.97 2.1E-05 36.0 3.6 35 167-201 77-111 (113)
132 cd06891 PX_Vps17p The phosphoi 85.7 0.84 1.8E-05 39.0 3.3 33 169-201 106-138 (140)
133 cd01781 AF6_RA_repeat2 Ubiquit 84.7 1.9 4.2E-05 34.6 4.7 71 227-299 18-99 (100)
134 cd06883 PX_PI3K_C2 The phospho 84.7 1 2.2E-05 36.8 3.2 33 169-201 74-107 (109)
135 cd01817 RGS12_RBD Ubiquitin do 84.2 1.5 3.4E-05 33.0 3.7 39 218-257 3-41 (73)
136 cd06882 PX_p40phox The phospho 83.7 1 2.3E-05 37.5 2.9 33 170-202 84-117 (123)
137 cd07277 PX_RUN The phosphoinos 80.4 1.8 3.9E-05 35.9 3.1 34 166-200 70-103 (118)
138 KOG4261|consensus 79.4 0.63 1.4E-05 49.5 0.2 52 295-348 190-242 (1003)
139 PF02163 Peptidase_M50: Peptid 79.0 0.02 4.3E-07 51.3 -9.8 50 215-264 136-192 (192)
140 cd06895 PX_PLD The phosphoinos 77.5 2.4 5.2E-05 36.2 3.2 35 167-201 104-138 (140)
141 cd06093 PX_domain The Phox Hom 76.4 2.7 5.9E-05 32.8 3.1 34 168-201 72-105 (106)
142 PF11874 DUF3394: Domain of un 75.5 12 0.00026 33.5 7.1 28 45-72 122-149 (183)
143 cd01818 TIAM1_RBD Ubiquitin do 72.9 5.6 0.00012 30.2 3.7 33 218-250 3-35 (77)
144 cd07290 PX_PI3K_C2_beta The ph 68.6 4.8 0.0001 32.9 2.8 32 170-201 75-107 (109)
145 KOG0792|consensus 66.7 32 0.00069 38.5 9.2 127 215-349 23-150 (1144)
146 cd06890 PX_Bem1p The phosphoin 65.6 6.3 0.00014 32.2 3.0 34 168-201 76-110 (112)
147 cd06887 PX_p47phox The phospho 64.8 6.2 0.00013 32.7 2.8 32 171-202 83-115 (118)
148 cd01816 Raf_RBD Ubiquitin doma 61.2 14 0.00029 28.0 3.7 44 217-261 2-45 (74)
149 KOG2528|consensus 57.8 9.4 0.0002 38.5 3.1 32 171-202 260-291 (490)
150 cd06884 PX_PI3K_C2_68D The pho 55.6 10 0.00022 31.0 2.5 31 171-201 78-109 (111)
151 KOG2921|consensus 54.9 16 0.00034 36.5 4.0 44 46-91 221-265 (484)
152 cd07296 PX_PLD1 The phosphoino 54.6 9.5 0.00021 32.4 2.2 34 168-201 100-133 (135)
153 PF11470 TUG-UBL1: GLUT4 regul 54.5 14 0.0003 27.3 2.8 32 219-250 1-32 (65)
154 cd07289 PX_PI3K_C2_alpha The p 53.8 11 0.00025 30.7 2.5 32 170-201 75-107 (109)
155 KOG1421|consensus 53.1 34 0.00074 36.6 6.3 44 45-91 862-905 (955)
156 cd06874 PX_KIF16B_SNX23 The ph 51.0 21 0.00045 30.0 3.7 19 166-184 70-88 (127)
157 PF14847 Ras_bdg_2: Ras-bindin 48.5 12 0.00026 30.3 1.8 81 217-300 3-86 (105)
158 PF11333 DUF3135: Protein of u 47.3 27 0.00058 27.1 3.5 66 302-371 4-71 (83)
159 cd01763 Sumo Small ubiquitin-r 46.8 35 0.00076 26.3 4.2 61 212-281 9-69 (87)
160 KOG0792|consensus 46.6 10 0.00022 42.2 1.4 73 12-91 708-796 (1144)
161 KOG3751|consensus 43.8 18 0.00039 37.3 2.6 88 211-302 185-273 (622)
162 cd05709 S2P-M50 Site-2 proteas 41.8 1.1 2.4E-05 39.5 -5.7 21 199-227 122-146 (180)
163 cd06161 S2P-M50_SpoIVFB SpoIVF 41.6 0.93 2E-05 41.3 -6.4 48 215-262 128-179 (208)
164 cd06162 S2P-M50_PDZ_SREBP Ster 40.8 1.7 3.7E-05 41.4 -4.8 42 199-250 216-264 (277)
165 cd01783 DAGK_delta_RA Ubiquiti 40.6 45 0.00098 26.6 3.9 53 228-281 20-74 (97)
166 KOG4371|consensus 39.9 30 0.00065 38.7 3.6 46 61-106 1185-1230(1332)
167 PF10952 DUF2753: Protein of u 37.8 36 0.00078 28.6 3.0 26 312-337 14-39 (140)
168 PF09916 DUF2145: Uncharacteri 37.8 32 0.0007 31.2 3.0 53 314-369 50-111 (201)
169 cd06164 S2P-M50_SpoIVFB_CBS Sp 37.2 1.2 2.7E-05 41.1 -6.3 36 215-250 145-185 (227)
170 cd01779 Myosin_IXb_RA ubitquit 36.6 62 0.0013 25.8 4.0 55 223-280 21-78 (105)
171 KOG4239|consensus 35.0 41 0.00089 32.5 3.4 61 218-281 207-271 (348)
172 cd06896 PX_PI3K_C2_gamma The p 34.7 43 0.00092 26.9 2.9 31 171-201 68-99 (101)
173 cd07291 PX_SNX5 The phosphoino 32.6 29 0.00063 29.6 1.8 30 172-201 110-139 (141)
174 KOG4371|consensus 32.4 45 0.00098 37.4 3.5 79 11-102 1248-1328(1332)
175 COG5233 GRH1 Peripheral Golgi 32.0 30 0.00066 33.5 2.0 31 48-78 66-96 (417)
176 PRK15464 cold shock-like prote 28.9 81 0.0018 23.5 3.5 17 11-27 8-24 (70)
177 PF00789 UBX: UBX domain; Int 28.6 1.5E+02 0.0032 22.1 5.0 37 214-250 6-42 (82)
178 cd06892 PX_SNX5_like The phosp 28.3 51 0.0011 28.2 2.6 34 168-201 91-139 (141)
179 cd01770 p47_UBX p47-like ubiqu 28.2 1E+02 0.0022 23.4 4.0 35 215-249 5-39 (79)
180 cd06159 S2P-M50_PDZ_Arch Uncha 25.3 3.6 7.8E-05 39.0 -5.5 30 215-244 204-240 (263)
181 KOG2273|consensus 23.5 61 0.0013 33.5 2.7 33 171-203 195-227 (503)
182 KOG3529|consensus 21.8 2E+02 0.0043 30.7 6.0 130 214-355 13-146 (596)
183 cd07292 PX_SNX6 The phosphoino 21.3 53 0.0012 28.0 1.4 31 171-201 109-139 (141)
184 smart00166 UBX Domain present 21.0 1.6E+02 0.0035 22.0 3.9 34 215-248 5-38 (80)
185 KOG1769|consensus 20.3 1E+02 0.0023 24.7 2.7 56 215-279 21-76 (99)
186 cd01767 UBX UBX (ubiquitin reg 20.2 1.8E+02 0.004 21.5 4.0 33 215-247 3-35 (77)
187 cd01775 CYR1_RA Ubiquitin doma 20.1 2.1E+02 0.0046 22.8 4.4 67 215-287 3-69 (97)
No 1
>KOG3784|consensus
Probab=100.00 E-value=4.3e-44 Score=340.19 Aligned_cols=208 Identities=37% Similarity=0.537 Sum_probs=194.4
Q ss_pred cccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHHHHHHHhchhhhhhh
Q psy2827 144 EDESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEIYLEKVCAVRVIAES 193 (373)
Q Consensus 144 ~~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~yl~~v~~~~~i~~s 193 (373)
....|++||||++|.+||+.| ++..++++||+++++|++++|+++.+++|
T Consensus 13 ~~~~ytaynih~nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L~~~~~~~rr~~leqylqa~~q~~~l~~s 92 (407)
T KOG3784|consen 13 SLERYTAYNIHINGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKLTPQQLDSRRRGLEQYLQAVCQDPVLARS 92 (407)
T ss_pred CcccccceeeeecceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCCChhhhHHHHHHHHHHHHHHhcCccccch
Confidence 567899999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCCccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc-----c
Q psy2827 194 ELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY-----S 268 (373)
Q Consensus 194 ~~~~~FL~~~~s~~~~~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~-----~ 268 (373)
+.++.||... +. ...+.+.++||||..++|+++++++++.+++.++.++|| +.+++.||+||+.+.. .
T Consensus 93 ~~~~~fL~~~-q~-----~~~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l-~~e~i~~f~lFlvr~~~~~~ls 165 (407)
T KOG3784|consen 93 ELVQKFLMRA-QP-----MEEVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGL-PDELIGYFGLFLVRDNDPGNLS 165 (407)
T ss_pred hhhhHHHHhc-cc-----cceeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCC-chHhhhheeeeEEeccCCCcce
Confidence 9999999988 44 345899999999999999999999999999999999999 8999999999999986 9
Q ss_pred eeeccCcCCCCceeeeccccCCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHH
Q psy2827 269 FERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQ 347 (373)
Q Consensus 269 ~~r~l~~~e~p~~~~~~~~~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq 347 (373)
++|||++||+||.+|.++++++.. ++|||||||+..|..|++ +.+|++|||+||++|+++||+.++ +...||++||
T Consensus 166 ~vRkl~~fE~p~vs~t~~~~~~~~--l~LRk~~~ds~~e~~L~d-~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq 242 (407)
T KOG3784|consen 166 FVRKLADFESPYVSLTSNYVSACE--LLLRKWYWDSSRERALMD-NRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQ 242 (407)
T ss_pred eeeeeccccccccccccccccccc--ceeeeeeecchhhhHHhc-CchHHHHHHHHHHHHHhcCceeechhhHHHHHHHH
Confidence 999999999999988888876522 999999999999999999 999999999999999999999997 4444999999
Q ss_pred hccchHHhhhhccC
Q psy2827 348 DASRKHEITTGSCN 361 (373)
Q Consensus 348 ~~~~~~~~l~l~~~ 361 (373)
++++++|||+||++
T Consensus 243 ~q~~~~~fL~m~R~ 256 (407)
T KOG3784|consen 243 EEESMKEFLELART 256 (407)
T ss_pred HhhhHHHHHHHHHh
Confidence 99999999999984
No 2
>KOG3552|consensus
Probab=99.93 E-value=1.9e-26 Score=236.18 Aligned_cols=256 Identities=21% Similarity=0.316 Sum_probs=177.7
Q ss_pred CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.||.|.+.|+.. ||||... .|. +|..|.+|||+. ..|+|||+|++|||++|++++|+.++
T Consensus 55 ~pr~vq~~r~~~lGFgfvag-----------------rPv-iVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervI 115 (1298)
T KOG3552|consen 55 EPRQVQLQRNASLGFGFVAG-----------------RPV-IVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVI 115 (1298)
T ss_pred cchhhhhhccccccceeecC-----------------Cce-EEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHH
Confidence 388899999875 7887642 354 689999999998 55999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEec--CccccccCCCCCCCCCeeeeeeeecCCCCCCCCccceecccccceeeeeeehhhhcccccc
Q psy2827 87 ELIKSGGDVLSLTVISV--SPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR 164 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~--~~~~~~~~~~~~~~~~~~~iGi~~~~~~p~si~~~~~~~~~~~~~~~~~i~~~g~l~~~~r 164 (373)
++++.+...|.++|.+. -|..++. ++....+..+..++... ++.+ .+-++|.-.
T Consensus 116 dlvRace~sv~ltV~qPc~~p~pKSt-----------flSa~KrArLkSnPvkV----rFaE-----eV~InG~~~---- 171 (1298)
T KOG3552|consen 116 DLVRACESSVNLTVCQPCVLPGPKST-----------FLSAGKRARLKSNPVKV----RFAE-----EVCINGAPL---- 171 (1298)
T ss_pred HHHHHHhhhcceEEeccccCCCchhh-----------hhhhhhhhhhccCCcee----eeeh-----hheecCccc----
Confidence 99999999999999873 2222221 22221111111111100 0111 111111110
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHhcccCCCCCccceEEEEEcCCCceEEEEEEecCCHHHHHHHh
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASA 244 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~~s~~~~~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~ 244 (373)
|-. +. +..-.+|..|.+||.||++.++.+.-.+++.+++..+
T Consensus 172 ----------------------------------~~~---sa-lgllcmPNVLKvyLENGQTKsFkfdatTtVkDVIltl 213 (1298)
T KOG3552|consen 172 ----------------------------------FPP---SA-LGLLCMPNVLKVYLENGQTKSFKFDATTTVKDVILTL 213 (1298)
T ss_pred ----------------------------------CCc---cc-ccceechhHHHHHHhcCccceeeecccccHHHHHHHH
Confidence 000 00 1111122357778889999999999999999999999
Q ss_pred ccccCCCchhhhchhheeeeecccee--ec--cCcCCCCceeeeccccCCCCceEEEEeeccCChhhhhcccCChHHHHH
Q psy2827 245 VPKLYLQSPSSAAYFYLFEIVEYSFE--RK--LEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATF 320 (373)
Q Consensus 245 ~~~igl~~~~~l~~f~lf~~~~~~~~--r~--l~~~e~p~~~~~~~~~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ 320 (373)
..++.+ -.+-+|+|.+...+... |. |.+-|+--+ .+++.. ++.-.||.+..|.|+++.+|+.|||+||+|
T Consensus 214 ~eKLsi---~~iE~FsL~LE~~~s~~rnkL~LLheqEsl~q-V~~Rp~--sHk~RCLFRItFVPkdp~dLlqrDpvAfeY 287 (1298)
T KOG3552|consen 214 LEKLSI---CCIELFSLVLEHVKSLKRNKLTLLHEQESLAQ-VAARPG--SHKLRCLFRITFVPKDPADLLQRDPVAFEY 287 (1298)
T ss_pred HHHHhh---hhHHHHHHHHHHHHhcccceeEeecHHHHHHH-HHhCCc--ccceeEEEEEEeccCCHHHHHhcCchHHHH
Confidence 999966 67778888887654443 33 444444332 122222 223366777889999999999999999999
Q ss_pred HHHHHHHHHhcCCccch---hhHHHHHHHHhcc
Q psy2827 321 MFWMAIDAVDRGQIRAE---DRLYELKALQDAS 350 (373)
Q Consensus 321 ly~Q~~~dv~~~~~~~~---~~~~~L~~lq~~~ 350 (373)
||.|+||||++++|.|+ +.+.+|+|||-+.
T Consensus 288 LYlQsCnDV~QERFapElk~elALRLAALhm~~ 320 (1298)
T KOG3552|consen 288 LYLQSCNDVNQERFAPELKPELALRLAALHMHQ 320 (1298)
T ss_pred HHHhhhhhHhHhhcccccchHHHHHHHHHHHHH
Confidence 99999999999999997 8999999998643
No 3
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=99.92 E-value=2.2e-25 Score=170.86 Aligned_cols=86 Identities=50% Similarity=0.901 Sum_probs=84.0
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCC-CC
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTA-SA 292 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~-~~ 292 (373)
++.|.++||||.++++++.+++++++++++++.++|| +.++..||+||++++.+|+|||+|||+||.+|+|||+|+ ++
T Consensus 1 ~V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L-~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~ly~~ny~sa~~~ 79 (87)
T cd01777 1 DVELRIALPDKATVTVRVRKNATTDQVYQALVAKAGM-DSYTQNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPG 79 (87)
T ss_pred CeEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCC-CHHHHhheeeeEEecceEEEeccCccCCceEEEEEeeccCCc
Confidence 3789999999999999999999999999999999999 999999999999999999999999999999999999998 89
Q ss_pred ceEEEEee
Q psy2827 293 TCLCIRKW 300 (373)
Q Consensus 293 ~~~~lrk~ 300 (373)
+|+++|||
T Consensus 80 ~cl~~rkw 87 (87)
T cd01777 80 TCLTARKW 87 (87)
T ss_pred ceEEEecC
Confidence 99999999
No 4
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.89 E-value=3.1e-24 Score=217.23 Aligned_cols=231 Identities=18% Similarity=0.167 Sum_probs=174.2
Q ss_pred cEEEEEEcCCCCccEEEEecc-------cCCCccccccccccCC--ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCC
Q psy2827 9 PREVQIAKSDTGFGFNVRGQV-------SEGGQLRSINGELYAP--LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~-------~~~~~~~~~g~~~~~p--~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~ 79 (373)
.-++++.|+++..-.++.-.. ........+|..+..| .+.|..|.++|||++|||++||+|++|||+++.+
T Consensus 176 ~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s 255 (449)
T PRK10779 176 STTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSSLGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQ 255 (449)
T ss_pred ceEEEEEeCCccceEEEEecccccccCccccchhhcccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCC
Confidence 456777787654333322210 0011122345443333 2479999999999999999999999999999998
Q ss_pred CCHHHHHHHHHh-CCCeEEEEEEecCccccccCCCCC---CCCCeeeeeeeecCC-C--------CCCCC-ccceecccc
Q psy2827 80 ATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPD---DHSGYQQIDYTEKRS-L--------PISIP-DYSYVNTED 145 (373)
Q Consensus 80 ~s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~~---~~~~~~~iGi~~~~~-~--------p~si~-~~~~~~~~~ 145 (373)
|+++.+.++. .++.+.+++.|.+......+.+.. .....+.+|+.+... . +.++. ........+
T Consensus 256 --~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~~iGi~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~ 333 (449)
T PRK10779 256 --WQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEGFAGVVPKVIPLPDEYKTVRQYGPFSAIYEATDKT 333 (449)
T ss_pred --HHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceeeEEEEeccccCCcccceeEEecCHHHHHHHHHHHH
Confidence 9999999987 678899999886543322222210 112235688865421 0 11111 133346678
Q ss_pred cceeeeeeehhhhcccccc--------cchhHH--HHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHhcccCCCCCccce
Q psy2827 146 ESFVVFNIYMAGRHLCSRR--------LTEQQL--DSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPV 215 (373)
Q Consensus 146 ~~~~~~~i~~~g~l~~~~r--------l~i~q~--~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~~s~~~~~~~~~l 215 (373)
+.++..++..++.+++|.. ++|+++ ++++.|+..||. |++.+ |+ | |
T Consensus 334 ~~~~~~~~~~l~~l~~g~~~~~~l~GPv~I~~~~~~~~~~g~~~~l~----------------~~a~i-Si-~------L 389 (449)
T PRK10779 334 WQLMKLTVSMLGKLITGDVKLNNLSGPISIAQGAGMSAEYGLVYYLM----------------FLALI-SV-N------L 389 (449)
T ss_pred HHHHHHHHHHHHHHhcCCccHhhcCCcHHHHHHHHHHHHHHHHHHHH----------------HHHHH-HH-H------H
Confidence 8899999999999999976 899998 889999999999 99999 99 9 9
Q ss_pred EEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee
Q psy2827 216 DIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV 265 (373)
Q Consensus 216 ~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~ 265 (373)
+++|||| ||||+ .+|.+++++++++++.+++++|++.++++|.|++|||+
T Consensus 390 gi~NLlPiP~LDGG~l~f~~~E~i~~r~~~~~~~~~~~~~G~~ll~~lm~~~~~nDi 446 (449)
T PRK10779 390 GIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDF 446 (449)
T ss_pred HHHHcCCCCccCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999 99999999999999999999999999999999999995
No 5
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.87 E-value=6.6e-24 Score=213.01 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=158.9
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCccccccCCCCCCCCCeeeeee
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDY 125 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~iGi 125 (373)
+.|..|.++|||+++||++||+|++|||+++.+ |+++...++. .++++.+++.|.+......+.+... ... .+|+
T Consensus 205 ~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~-~~~-~iGi 280 (420)
T TIGR00054 205 PVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGETLSISLTPEAK-GKI-GIGI 280 (420)
T ss_pred cEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCC-Cce-EEEE
Confidence 479999999999999999999999999999998 9999999987 6788999998866543333333111 111 2777
Q ss_pred eecCC---CCCCCC-ccceecccccceeeeeeehhhhcccccc--------cchhHH--HHHhhcHHHHHHHHhchhhhh
Q psy2827 126 TEKRS---LPISIP-DYSYVNTEDESFVVFNIYMAGRHLCSRR--------LTEQQL--DSRRRGLEIYLEKVCAVRVIA 191 (373)
Q Consensus 126 ~~~~~---~p~si~-~~~~~~~~~~~~~~~~i~~~g~l~~~~r--------l~i~q~--~~rr~gl~~yl~~v~~~~~i~ 191 (373)
..... .+.++. ........+++++..++..++++++|+. ++|+++ ++++.|+..||.
T Consensus 281 ~~~~~~~~~~~~~~~a~~~~~~~t~~~~~~~~~~l~~l~~g~~~~~~lsGPvgI~~~~~~~~~~G~~~~l~--------- 351 (420)
T TIGR00054 281 SPSLAPLEVSYGILNAFAKGASATVDIVKLILTNLGKLITGSFKLKNLSGPVGIVKGAGSSANSGIVYLLQ--------- 351 (420)
T ss_pred eccccceeeecCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhcCCcHHHHHHHHHHHHHhHHHHHH---------
Confidence 54321 111221 2344567889999999999999999976 888888 889999999999
Q ss_pred hhHHHHHHHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeee
Q psy2827 192 ESELMQEFLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEI 264 (373)
Q Consensus 192 ~s~~~~~FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~ 264 (373)
|++.+ |+ | |+++|||| ||||+ .+|.++++|++++++.+++++|++++.++|+|++|||
T Consensus 352 -------~~a~i-Si-~------Lgi~NLLPiP~LDGG~llf~~iE~i~gkpv~~~~~~~~~~iG~~lll~Lm~~~~~nD 416 (420)
T TIGR00054 352 -------FGAFL-SI-N------LGIMNLLPIPALDGGQLLFLFIEAIRGKPLPEKVQAFVYRIGVAFLLFLMGLGLFND 416 (420)
T ss_pred -------HHHHH-HH-H------HHHHHhcCCCCCCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99 8 99999999 99999 9999999999999999999999999999999999999
Q ss_pred ec
Q psy2827 265 VE 266 (373)
Q Consensus 265 ~~ 266 (373)
+.
T Consensus 417 i~ 418 (420)
T TIGR00054 417 LL 418 (420)
T ss_pred hh
Confidence 63
No 6
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.36 E-value=8.8e-12 Score=96.45 Aligned_cols=80 Identities=39% Similarity=0.657 Sum_probs=69.3
Q ss_pred EEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827 11 EVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI 89 (373)
Q Consensus 11 ~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i 89 (373)
+|++.| ...+|||++.+..+.. .++++|..|.++|||+++||++||+|++|||+++.++++.++..++
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~-----------~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l 69 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND-----------EKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLL 69 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS-----------SEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHH
T ss_pred CEEEEeCCCCCcCEEEEecCCCC-----------cCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHH
Confidence 578898 5578999999875421 1356899999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEE
Q psy2827 90 KSGGDVLSLTVI 101 (373)
Q Consensus 90 ~~~g~~v~l~V~ 101 (373)
+.++.+++|+|.
T Consensus 70 ~~~~~~v~L~V~ 81 (81)
T PF00595_consen 70 KSASNPVTLTVQ 81 (81)
T ss_dssp HHSTSEEEEEEE
T ss_pred HCCCCcEEEEEC
Confidence 998779998874
No 7
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.20 E-value=1.1e-10 Score=105.59 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=99.8
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecccee-eccCcCCCCceeeeccccCC-
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFE-RKLEAKEFPHHLYIQNYSTA- 290 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~-r~l~~~e~p~~~~~~~~~~~- 290 (373)
.+..+.++||||..+.+++....++.++++.++.++|+ ....+|+||......-. +-|. |.. .+....+.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l---~~~~~F~L~~~~~~~~~~~~l~----~~~-~l~~~~~~~ 73 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGI---RESEYFGLQFEDPDEDLSHWLD----PAK-TLLDQDVKS 73 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCC---CccceeEEEEEcCCCCcCeeCC----Ccc-CHHHhcCCC
Confidence 45789999999999999999999999999999999999 45899999987643211 1111 111 11111111
Q ss_pred CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHh
Q psy2827 291 SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEI 355 (373)
Q Consensus 291 ~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~ 355 (373)
....+.+|+.+|.|.. ..+.. |+++++|+|.|+.+||.+|++.++ +...+|+||+-+-...+|
T Consensus 74 ~~~~l~fr~r~~~~~~-~~~~~-d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~ 137 (207)
T smart00295 74 EPLTLYFRVKFYPPDP-LQLKE-DPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDY 137 (207)
T ss_pred CCcEEEEEEEEccCCH-HHhcc-hhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 1234889999996653 45666 999999999999999999999876 899999999877554443
No 8
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.08 E-value=2.5e-09 Score=82.34 Aligned_cols=80 Identities=49% Similarity=0.748 Sum_probs=66.3
Q ss_pred cEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 9 PREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 9 ~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
++.+++.++ ..+|||++.+.... ..+++|..|.++|||+++||++||+|++|||.++.++++.++..
T Consensus 1 ~~~~~l~~~~~~~~G~~~~~~~~~------------~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~ 68 (82)
T cd00992 1 VRTVTLRKDPGGGLGFSLRGGKDS------------GGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVE 68 (82)
T ss_pred CEEEEEEeCCCCCcCEEEeCcccC------------CCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHH
Confidence 367888888 57899999876321 13458999999999999999999999999999999777999999
Q ss_pred HHHhCCCeEEEEE
Q psy2827 88 LIKSGGDVLSLTV 100 (373)
Q Consensus 88 ~i~~~g~~v~l~V 100 (373)
.++.....+++++
T Consensus 69 ~l~~~~~~v~l~v 81 (82)
T cd00992 69 LLKNSGDEVTLTV 81 (82)
T ss_pred HHHhCCCeEEEEE
Confidence 9998655777665
No 9
>KOG3550|consensus
Probab=99.02 E-value=1.1e-09 Score=92.32 Aligned_cols=92 Identities=38% Similarity=0.720 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
|+.-.-||.|.|.|...|+||++-|++.++. | ++|+.+.||+.|++-| |+.||++++|||..+++-.
T Consensus 85 seghahprvvelpktdeglgfnvmggkeqns-----------p-iyisriipggvadrhgglkrgdqllsvngvsvege~ 152 (207)
T KOG3550|consen 85 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNS-----------P-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEH 152 (207)
T ss_pred hccCCCCceeecCccccccceeeccCcccCC-----------c-eEEEeecCCccccccCcccccceeEeecceeecchh
Confidence 3445678999999999999999999977643 3 4999999999999876 9999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCccc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSPEE 107 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~~~ 107 (373)
|+..+++++.+-..+.+.| |.+|..
T Consensus 153 hekavellkaa~gsvklvv-rytpkv 177 (207)
T KOG3550|consen 153 HEKAVELLKAAVGSVKLVV-RYTPKV 177 (207)
T ss_pred hHHHHHHHHHhcCcEEEEE-ecChHH
Confidence 9999999999767777765 667653
No 10
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=7.5e-11 Score=116.90 Aligned_cols=193 Identities=21% Similarity=0.231 Sum_probs=136.0
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCe---EEEEEEe-cCcc--------ccccCCCC
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDV---LSLTVIS-VSPE--------EAERLEPP 114 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~---v~l~V~r-~~~~--------~~~~~~~~ 114 (373)
.+..+..+++|+.+|+++||+++++|+.++.+ ++++...+.. .+.. +.+.+.| .... ......|.
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~ 209 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVAS--WDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPV 209 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccC--HHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeecc
Confidence 45578999999999999999999999999999 9998888776 5555 6777777 2111 01111111
Q ss_pred ----CCCCCe-----eeeeeeecCC-------CCCCCC-ccceecccccceeeeeeehhhhcccccc--------cchhH
Q psy2827 115 ----DDHSGY-----QQIDYTEKRS-------LPISIP-DYSYVNTEDESFVVFNIYMAGRHLCSRR--------LTEQQ 169 (373)
Q Consensus 115 ----~~~~~~-----~~iGi~~~~~-------~p~si~-~~~~~~~~~~~~~~~~i~~~g~l~~~~r--------l~i~q 169 (373)
...... +.+|..+..+ .+.++. ........++.++..++.....+..+.. +++.+
T Consensus 210 ~~~~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~l~Gpi~i~~ 289 (375)
T COG0750 210 VIPLKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGLAVEKTGRLVKLTLKMLKKLITGDLSLKNLSGPIGIAK 289 (375)
T ss_pred eeccCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHheecccccccccCceehhh
Confidence 111111 1344443300 000000 0112233455555555556666666654 66777
Q ss_pred H--HHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHH
Q psy2827 170 L--DSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEV 240 (373)
Q Consensus 170 ~--~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~ 240 (373)
. +.++.|+..+++ |++.+ |+ + ++++|||| ||||+ .+|.+++++.+.+
T Consensus 290 ~~~~~~~~~~~~~l~----------------~~~~l-si-~------lg~lNllP~p~LDGG~i~~~~~e~~~g~~~~~~ 345 (375)
T COG0750 290 IAGAAASLGLINLLF----------------FLALL-SI-N------LGILNLLPIPPLDGGHLLFYLLEALRGKPLSER 345 (375)
T ss_pred hhhHHHhhHHHHHHH----------------HHHHH-HH-H------HHHHhccCCCccCccHHHHHHHHHHhCCCCCHH
Confidence 7 566689999999 99999 88 8 99999999 99999 8888999999999
Q ss_pred HHHhccccCCCchhhhchhheeeeec
Q psy2827 241 YASAVPKLYLQSPSSAAYFYLFEIVE 266 (373)
Q Consensus 241 ~~~~~~~igl~~~~~l~~f~lf~~~~ 266 (373)
.+...+.+|++.+..+|++++|+|..
T Consensus 346 ~~~~~~~~g~~ll~~~~~~~~~~di~ 371 (375)
T COG0750 346 VEAALYRIGLALLLLLMLLATFNDLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 11
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.98 E-value=5.8e-09 Score=77.92 Aligned_cols=67 Identities=43% Similarity=0.648 Sum_probs=57.5
Q ss_pred CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEE
Q psy2827 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSL 98 (373)
Q Consensus 20 g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l 98 (373)
++||++.+... ++++|..|.+++||+.+||++||+|++|||.++.+++++++...++. .|+.+++
T Consensus 2 ~~G~~~~~~~~--------------~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l 67 (70)
T cd00136 2 GLGFSIRGGTE--------------GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL 67 (70)
T ss_pred CccEEEecCCC--------------CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence 57888877521 24589999999999999999999999999999999777999999998 5688888
Q ss_pred EE
Q psy2827 99 TV 100 (373)
Q Consensus 99 ~V 100 (373)
++
T Consensus 68 ~v 69 (70)
T cd00136 68 TV 69 (70)
T ss_pred EE
Confidence 76
No 12
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.96 E-value=6.7e-09 Score=80.52 Aligned_cols=59 Identities=36% Similarity=0.545 Sum_probs=52.6
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
++.|..|.++|||+++||++||.|++|||.++.+ +.++...+.. .|+.+++++.|....
T Consensus 15 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 15 GVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp SEEEEEESTTSHHHHTTS-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred eEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 5689999999999999999999999999999988 9999999976 699999999996543
No 13
>KOG3209|consensus
Probab=98.92 E-value=3.6e-09 Score=107.98 Aligned_cols=86 Identities=33% Similarity=0.546 Sum_probs=72.8
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
+...-.+|+|.|+.+||||+|+|++. |.-..+|-.+.+++||.+.| ++.||+|++|||++..+++|+
T Consensus 895 qn~~~~~VelErG~kGFGFSiRGGre------------ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~ 962 (984)
T KOG3209|consen 895 QNGDLYTVELERGAKGFGFSIRGGRE------------YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHD 962 (984)
T ss_pred ccCCeeEEEeeccccccceEeecccc------------cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHH
Confidence 34456789999999999999999843 22234899999999999999 999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEe
Q psy2827 84 QVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r 102 (373)
.++++|++.|..+.+.+.+
T Consensus 963 rAIelIk~gg~~vll~Lr~ 981 (984)
T KOG3209|consen 963 RAIELIKQGGRRVLLLLRR 981 (984)
T ss_pred HHHHHHHhCCeEEEEEecc
Confidence 9999999977766555443
No 14
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.92 E-value=2.8e-08 Score=76.59 Aligned_cols=81 Identities=42% Similarity=0.643 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI 89 (373)
Q Consensus 10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i 89 (373)
..+++.+....+||.+...... .++++|..|.++|||+++||++||+|++|||.++.+++..+....+
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~------------~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~ 70 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDE------------GGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLL 70 (85)
T ss_pred EEEEEEECCCcccEEEECCCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 5677888887899998765211 1356899999999999999999999999999999998888888888
Q ss_pred HhCCCeEEEEEEe
Q psy2827 90 KSGGDVLSLTVIS 102 (373)
Q Consensus 90 ~~~g~~v~l~V~r 102 (373)
+..+..+.+++.|
T Consensus 71 ~~~~~~~~l~i~r 83 (85)
T smart00228 71 KKAGGKVTLTVLR 83 (85)
T ss_pred HhCCCeEEEEEEe
Confidence 7766688888766
No 15
>KOG3209|consensus
Probab=98.90 E-value=4.2e-09 Score=107.47 Aligned_cols=86 Identities=33% Similarity=0.656 Sum_probs=74.6
Q ss_pred CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
..+..|..|.|+|+. .||||.|..... +|..-|+.+.+||||++.| |+.||+|++|||+.|.+++
T Consensus 749 ~~~~~~yDV~lhR~ENeGFGFVi~sS~~-------------kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~ls 815 (984)
T KOG3209|consen 749 AAPSGPYDVVLHRKENEGFGFVIMSSQN-------------KPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLS 815 (984)
T ss_pred cCCCCCeeeEEecccCCceeEEEEeccc-------------CCCCCccccccCChhHhhccccccceEEEecCeeeeccC
Confidence 345668889999886 699999987643 2333499999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEe
Q psy2827 82 HKQVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r 102 (373)
|.+++++|+.+|-.|+|+|..
T Consensus 816 Hadiv~LIKdaGlsVtLtIip 836 (984)
T KOG3209|consen 816 HADIVSLIKDAGLSVTLTIIP 836 (984)
T ss_pred chhHHHHHHhcCceEEEEEcC
Confidence 999999999999999999874
No 16
>KOG3549|consensus
Probab=98.90 E-value=3.8e-09 Score=100.05 Aligned_cols=87 Identities=30% Similarity=0.567 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
+|..++.|+|+|.|-+ +|+|++|.|+.++. .|. +|+.+.++-.|+..| |-.||-|++|||..|..+
T Consensus 49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn-----------~Pv-viSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c 116 (505)
T KOG3549|consen 49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHN-----------LPV-VISKIYKDQAADITGQLFVGDAILQVNGIYVTAC 116 (505)
T ss_pred CCccCCceeEEEEeeecCcceeeeccccccC-----------ccE-EeehhhhhhhhhhcCceEeeeeeEEeccEEeecC
Confidence 4566788999999987 67999999985442 343 799999999999999 789999999999999999
Q ss_pred CHHHHHHHHHhCCCeEEEEEE
Q psy2827 81 THKQVVELIKSGGDVLSLTVI 101 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~ 101 (373)
+|++++++++++|+.+++||.
T Consensus 117 ~HeevV~iLRNAGdeVtlTV~ 137 (505)
T KOG3549|consen 117 PHEEVVNILRNAGDEVTLTVK 137 (505)
T ss_pred ChHHHHHHHHhcCCEEEEEeH
Confidence 999999999999999999996
No 17
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.71 E-value=1e-07 Score=73.89 Aligned_cols=57 Identities=35% Similarity=0.578 Sum_probs=50.7
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV 103 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~ 103 (373)
++|..+.++|||+++||++||+|++|||.++.++++.++...++. .++.+.+++.|.
T Consensus 15 ~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 15 LVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred EEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 579999999999999999999999999999999555999888876 678899998774
No 18
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.66 E-value=1.8e-07 Score=71.99 Aligned_cols=58 Identities=26% Similarity=0.451 Sum_probs=51.9
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
.++.|..|.++|||+++||++||.|++|||.++.+ |+++...+.. .++.+.+++.|.+
T Consensus 10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECC
Confidence 35689999999999999999999999999999998 9999999986 3788999988744
No 19
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.66 E-value=2e-07 Score=71.17 Aligned_cols=56 Identities=34% Similarity=0.588 Sum_probs=50.0
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS 104 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~ 104 (373)
+.|..|.++|||+++||++||+|++|||.++.+ ++++...+.. .+..+.+++.|..
T Consensus 14 ~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 14 PVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred cEEEeECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECC
Confidence 379999999999999999999999999999998 9999988887 4778888887743
No 20
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=98.44 E-value=2.9e-07 Score=75.08 Aligned_cols=73 Identities=73% Similarity=1.226 Sum_probs=59.2
Q ss_pred CCCCCCCccceecccccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHH
Q psy2827 130 SLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEI 179 (373)
Q Consensus 130 ~~p~si~~~~~~~~~~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~ 179 (373)
++++++|++......+..|++|+|++.|...+.+| .+...+++||.||+.
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~ 82 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMAGRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFSLSEQQLDARRRGLEQ 82 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEcCCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 34556677665555577999999998887777776 244556999999999
Q ss_pred HHHHHhchhhhhhhHHHHHHHHH
Q psy2827 180 YLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 180 yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
||+.++++|.|.+|+.|++||..
T Consensus 83 fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 83 YLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHhcCcccccCHHHHHHhcc
Confidence 99999999999999999999963
No 21
>KOG3651|consensus
Probab=98.44 E-value=8.3e-07 Score=82.98 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=73.6
Q ss_pred CcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.+.+|+|.|+.++ .|++|.|+ .||.|+.+|-.|..++||++.| ++.||.|++|||..|.+.+.-++
T Consensus 4 ~~~~v~ltKD~~nliGISIGGG------------apyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveV 71 (429)
T KOG3651|consen 4 QSETVELTKDEKNLIGISIGGG------------APYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEV 71 (429)
T ss_pred ccCcEEEeeccccceeEEecCC------------CCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHH
Confidence 4567999999876 79998764 6789999999999999999999 99999999999999999889999
Q ss_pred HHHHHhCCCeEEEEEEec
Q psy2827 86 VELIKSGGDVLSLTVISV 103 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~ 103 (373)
.++|+....++.+.+-..
T Consensus 72 AkmIQ~~~~eV~IhyNKL 89 (429)
T KOG3651|consen 72 AKMIQVSLNEVKIHYNKL 89 (429)
T ss_pred HHHHHHhccceEEEehhc
Confidence 999998777888877543
No 22
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.44 E-value=1.4e-06 Score=66.78 Aligned_cols=56 Identities=32% Similarity=0.446 Sum_probs=45.9
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++.|..|.++|||+++||++||+|++|||.++.+ +.++.... ..++.+.+++.|..
T Consensus 13 ~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 13 LGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred cEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 3579999999999999999999999999999987 66654433 25678888887743
No 23
>KOG3551|consensus
Probab=98.39 E-value=4.2e-07 Score=87.46 Aligned_cols=81 Identities=33% Similarity=0.558 Sum_probs=71.1
Q ss_pred cEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 9 ~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.|.|++.|-. +|+|++|+|+.+... | +.|+.+.+|-.|++.+ |..||.|++|||....+.+|++.+
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreNkM-----------P-IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAV 152 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRENKM-----------P-ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAV 152 (506)
T ss_pred cceeEEEEecCCcceEEeecCcccCC-----------c-eehhHhccccccccccceeeccEEEEecchhhhhcchHHHH
Confidence 4778888764 789999999965433 3 4799999999999999 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEE
Q psy2827 87 ELIKSGGDVLSLTVI 101 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~ 101 (373)
+.+++.|+.|.+.|.
T Consensus 153 qaLKraGkeV~levK 167 (506)
T KOG3551|consen 153 QALKRAGKEVLLEVK 167 (506)
T ss_pred HHHHhhCceeeeeee
Confidence 999999999988875
No 24
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.38 E-value=2.3e-06 Score=65.65 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=48.9
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
++.|..|.++|||+. ||++||.|++|||.++.+ |+++...+.. .+..+.+++.|.+
T Consensus 9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred CEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence 357999999999986 899999999999999998 9999999875 5788999988743
No 25
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.38 E-value=2.4e-06 Score=66.70 Aligned_cols=57 Identities=35% Similarity=0.440 Sum_probs=51.0
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
++.|..|.++|||+++|+++||.|++|||.++.+ +.++...+.. .+..+.+++.|.+
T Consensus 25 g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 25 GVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred EEEEEEECCCCHHHHcCCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 5689999999999999999999999999999998 9999988877 3788999987743
No 26
>PRK10139 serine endoprotease; Provisional
Probab=98.37 E-value=3.7e-06 Score=85.64 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=67.8
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccC--------------CceEEEEecCCCHHHHcCCCCCCEEEEEC
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYA--------------PLQHVSAVLAGGAAEKAGIRKGDRILAVN 73 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~--------------p~~~V~~V~~gspA~~aGL~~GD~Il~In 73 (373)
..-.+++.|+++..-+++.............+..+.. .+++|..|.++|||+++||++||+|++||
T Consensus 339 ~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~In 418 (455)
T PRK10139 339 TKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVN 418 (455)
T ss_pred CEEEEEEEECCEEEEEEEEECCCCCcccccccccccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence 3456777787765555554332111111222222211 24689999999999999999999999999
Q ss_pred CEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 74 NVNVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 74 G~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
|+++.+ |+++.+.+++.++.+.+++.|..
T Consensus 419 g~~v~~--~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 419 RDRVNS--IAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CEEcCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence 999999 99999999885578889988754
No 27
>KOG3553|consensus
Probab=98.34 E-value=1.3e-06 Score=68.89 Aligned_cols=69 Identities=30% Similarity=0.384 Sum_probs=55.3
Q ss_pred ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827 21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS 91 (373)
Q Consensus 21 ~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~ 91 (373)
.||.|.|+.++. +-.+.-..+ .-+++|.+|.+||||+.|||+.+|+|+.+||-...-.+|++++..|+.
T Consensus 37 ~GFkIGGGIDQD-p~k~Pf~yt-D~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 37 LGFKIGGGIDQD-PSKNPFSYT-DKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEEeccccCCC-cccCCCCcC-CccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 899999986642 211111211 347899999999999999999999999999999988889999988876
No 28
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.17 E-value=9.5e-06 Score=81.13 Aligned_cols=59 Identities=32% Similarity=0.452 Sum_probs=52.4
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~ 104 (373)
++.|..|.++|||+++||++||+|++|||+++.++++.++...++. .|..+.+++.|.+
T Consensus 103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4579999999999999999999999999999998778898888876 6889999998743
No 29
>KOG3580|consensus
Probab=98.16 E-value=4.3e-06 Score=84.49 Aligned_cols=87 Identities=30% Similarity=0.437 Sum_probs=72.1
Q ss_pred cEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 9 ~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+++||.|++ .|||+.|.|+.+.+. +.-...-++|+.|.||+||+ .-|+.||+|+-|||+++++..|.-+++
T Consensus 9 QhTvTL~kdp~rGFGIAiSGGRDnPh------f~~getSiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQ 81 (1027)
T KOG3580|consen 9 QHTVTLQKDPKRGFGIAISGGRDNPH------FENGETSIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQ 81 (1027)
T ss_pred hheeeeecCCCCcceeEeecCCCCCC------ccCCceeEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHH
Confidence 5899999998 489999999866432 11112346899999999998 449999999999999999988998999
Q ss_pred HHHhCCCeEEEEEEe
Q psy2827 88 LIKSGGDVLSLTVIS 102 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r 102 (373)
.++.+|+...++|.|
T Consensus 82 qLrksgK~A~ItvkR 96 (1027)
T KOG3580|consen 82 QLRKSGKVAAITVKR 96 (1027)
T ss_pred HHHhhccceeEEecc
Confidence 999999988888865
No 30
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.14 E-value=9.3e-06 Score=79.54 Aligned_cols=58 Identities=33% Similarity=0.580 Sum_probs=50.9
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS 104 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~ 104 (373)
+.|..|.++|||+++||++||+|++|||.++.+++..++...++. .|..+.+++.|.+
T Consensus 64 ~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 64 IVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 478999999999999999999999999999998666788777766 6889999998753
No 31
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.07 E-value=9.5e-06 Score=82.66 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=50.5
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.|..|.++|||++|||++||+|++|||+++.+ |+++...+.. .++.+.+++.|.+.
T Consensus 129 lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~--~~~l~~~v~~~~~g~~v~v~v~R~gk 186 (449)
T PRK10779 129 VVGEIAPNSIAAQAQIAPGTELKAVDGIETPD--WDAVRLALVSKIGDESTTITVAPFGS 186 (449)
T ss_pred cccccCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhhccCCceEEEEEeCCc
Confidence 58999999999999999999999999999999 9999888765 57889999998654
No 32
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=98.05 E-value=3.8e-05 Score=65.51 Aligned_cols=86 Identities=28% Similarity=0.327 Sum_probs=58.5
Q ss_pred CCcEEEEEEcC-----CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCC-CCEEEEECCEEcCCC
Q psy2827 7 TGPREVQIAKS-----DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGA 80 (373)
Q Consensus 7 ~~~r~v~l~r~-----~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~-GD~Il~InG~~v~~~ 80 (373)
...|.|.+.-. .+.+|++++-...+.. ...+..|-.|.|+|||++|||++ .|.|+.+++....+
T Consensus 9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~---------~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~- 78 (138)
T PF04495_consen 9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGA---------EEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDD- 78 (138)
T ss_dssp SSEEEEEE---SSSSSSSSS-EEEEEEE-TTG---------CCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--S-
T ss_pred CeEEEEEEccCcccCCCCCCcEEEEEeccccc---------ccceEEEeEecCCCHHHHCCccccccEEEEccceecCC-
Confidence 45577777521 2449999987643211 13456899999999999999998 69999999998887
Q ss_pred CHHHHHHHHHh-CCCeEEEEEEec
Q psy2827 81 THKQVVELIKS-GGDVLSLTVISV 103 (373)
Q Consensus 81 s~~~~~~~i~~-~g~~v~l~V~r~ 103 (373)
.+++.+.++. .++++.+.|-..
T Consensus 79 -~~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 79 -EDDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp -TCHHHHHHHHTTTS-EEEEEEET
T ss_pred -HHHHHHHHHHcCCCcEEEEEEEC
Confidence 7899999988 689999998753
No 33
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.04 E-value=4.4e-05 Score=77.31 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=53.1
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+++++ .++.+.+++.|...
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 36789999999999999999999999999999998 9999999986 57899999988543
No 34
>PRK10942 serine endoprotease; Provisional
Probab=98.04 E-value=4.9e-05 Score=77.88 Aligned_cols=96 Identities=21% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCcEEEEEEcCCCCccEEEEecccC----CCcccccccccc-------CCceEEEEecCCCHHHHcCCCCCCEEEEECCE
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSE----GGQLRSINGELY-------APLQHVSAVLAGGAAEKAGIRKGDRILAVNNV 75 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~----~~~~~~~g~~~~-------~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~ 75 (373)
...-.+++.|+++..-+.+.-.... ......+|+... ..+++|..|.++|||+++||++||+|++|||+
T Consensus 359 g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~ 438 (473)
T PRK10942 359 GSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQ 438 (473)
T ss_pred CCEEEEEEEECCeEEEEEEEeCcCcccccccccccccceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCE
Confidence 3445677778776555554432110 011111332111 13568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 76 NVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 76 ~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++.+ ++++.+.+++.+..+.++|.|..
T Consensus 439 ~V~s--~~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 439 PVKN--IAELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred EcCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence 9999 99999999886678899998854
No 35
>KOG1892|consensus
Probab=98.04 E-value=1.3e-05 Score=84.63 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
-+|+|.|. .|.|++|...++-++ + .-|++|.+|.+|++|+..| |+.||++++|||+..-+.+.+.+.++
T Consensus 935 ~~vtL~Kn-nGmGLSIVAAkGaGq--~-------klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~l 1004 (1629)
T KOG1892|consen 935 ITVTLKKN-NGMGLSIVAAKGAGQ--R-------KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARL 1004 (1629)
T ss_pred EEEEEecc-CCceEEEEeeccCCc--c-------ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHH
Confidence 45778777 899999987754322 1 3467899999999999988 99999999999999999999999999
Q ss_pred HHhCCCeEEEEEE
Q psy2827 89 IKSGGDVLSLTVI 101 (373)
Q Consensus 89 i~~~g~~v~l~V~ 101 (373)
+-+.|..|.+.|.
T Consensus 1005 mtrtg~vV~leVa 1017 (1629)
T KOG1892|consen 1005 MTRTGNVVHLEVA 1017 (1629)
T ss_pred HhccCCeEEEehh
Confidence 9999999999985
No 36
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.03 E-value=1.9e-05 Score=79.97 Aligned_cols=59 Identities=31% Similarity=0.452 Sum_probs=52.9
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.+++|..|.++|||+++||++||+|++|||.++.+ +.++...+.. .++.+.+++.|...
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~ 317 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGK 317 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 46789999999999999999999999999999998 9999988876 58899999988544
No 37
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.98 E-value=2.8e-05 Score=73.38 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=52.2
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
|..|..+.+++||+++||++||.|++|||.++.+ ++++.+++.+ .++.++++|.|.+.
T Consensus 192 G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 192 GYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred EEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCE
Confidence 5578899999999999999999999999999999 9999999887 56789999998654
No 38
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=2.9e-05 Score=77.92 Aligned_cols=57 Identities=32% Similarity=0.572 Sum_probs=52.9
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV 103 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~ 103 (373)
+.|.++.+++||++||+++||+|++|||.++.+.+.++++..++. .|..++|++.|.
T Consensus 114 ~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 114 VKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 468899999999999999999999999999999888999999988 799999999984
No 39
>PRK10139 serine endoprotease; Provisional
Probab=97.96 E-value=2.9e-05 Score=79.18 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=52.6
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
++.|..|.++|||+++||++||+|++|||+++.+ |.++...+.. .|+.+.+++.|.+.
T Consensus 291 Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~ 350 (455)
T PRK10139 291 GAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK 350 (455)
T ss_pred ceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 6689999999999999999999999999999999 9999988876 58889999988654
No 40
>KOG3605|consensus
Probab=97.92 E-value=2.5e-05 Score=79.81 Aligned_cols=136 Identities=18% Similarity=0.280 Sum_probs=91.5
Q ss_pred EEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 10 r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
+.|.+.|.. ..+|..|.-. |+..-.|.++|.+...++||+++| |-.||+|++|||...-+++......
T Consensus 647 KEVvv~K~kGEiLGVViVES----------GWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs 716 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVES----------GWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQS 716 (829)
T ss_pred ceeeeecccCceeeEEEEec----------CccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHH
Confidence 567777654 5799988754 122225777889999999999999 9999999999999999999999999
Q ss_pred HHHh-C-CCeEEEEEEecCccccccCCCCCCCCCeeeeeeeecCCCCCCCCccceecccccceeeeeeehhhh
Q psy2827 88 LIKS-G-GDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGR 158 (373)
Q Consensus 88 ~i~~-~-g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~iGi~~~~~~p~si~~~~~~~~~~~~~~~~~i~~~g~ 158 (373)
+|++ + ...|.++|.++.|-.+..+.-. ...+.+|++....+-.+.-.-..+.+.|.+.---.|.+||.
T Consensus 717 ~Ik~~KnQT~VkltiV~cpPV~~V~I~RP---d~kyQLGFSVQNGiICSLlRGGIAERGGVRVGHRIIEINgQ 786 (829)
T KOG3605|consen 717 IIKGLKNQTAVKLNIVSCPPVTTVLIRRP---DLRYQLGFSVQNGIICSLLRGGIAERGGVRVGHRIIEINGQ 786 (829)
T ss_pred HHhcccccceEEEEEecCCCceEEEeecc---cchhhccceeeCcEeehhhcccchhccCceeeeeEEEECCc
Confidence 9998 3 4679999999887654433221 23346777655433222211111234444444445555543
No 41
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.88 E-value=4.4e-05 Score=75.37 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=52.3
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
.+++|..|.++|||+++||++||.|++|||+++.+ ++++.+.+.+ .|+.+.+++.|..
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 36689999999999999999999999999999999 9999998875 5889999998854
No 42
>PRK10898 serine endoprotease; Provisional
Probab=97.87 E-value=5.5e-05 Score=74.72 Aligned_cols=58 Identities=28% Similarity=0.354 Sum_probs=52.1
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
.++.|..|.++|||+++||++||+|++|||+++.+ +.++.+.+.. .|+.+.+++.|..
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 46789999999999999999999999999999999 9998888876 5788999998754
No 43
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.86 E-value=7.4e-05 Score=74.20 Aligned_cols=72 Identities=29% Similarity=0.469 Sum_probs=53.7
Q ss_pred CCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCccccccCCCC-CCCCCeeeeeeeec
Q psy2827 55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPP-DDHSGYQQIDYTEK 128 (373)
Q Consensus 55 gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~-~~~~~~~~iGi~~~ 128 (373)
+|||++|||++||.|++|||.++.+ |+++.+.+++ .++.+.+++.|........+.|. ....+.+.+|+...
T Consensus 123 ~SPAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V~Pv~~~~d~~ykLGl~Vr 196 (402)
T TIGR02860 123 HSPGEEAGIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTIERGGKIIETVIKPVKDKEEGRYRIGLYIR 196 (402)
T ss_pred CCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEEEECCEEEEEEEEEeeeCCCCCEEEEEEEE
Confidence 5899999999999999999999999 9999999988 67899999988654333233221 11123456776543
No 44
>PRK10942 serine endoprotease; Provisional
Probab=97.84 E-value=6.5e-05 Score=76.98 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=52.9
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.++.|..|.++|||+++||++||+|++|||+++.+ ++++...+.. .++.+.+++.|.+.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~ 371 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK 371 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCe
Confidence 36789999999999999999999999999999999 9999988876 57889999987653
No 45
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.82 E-value=4.6e-05 Score=76.14 Aligned_cols=49 Identities=33% Similarity=0.468 Sum_probs=43.0
Q ss_pred EEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2827 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101 (373)
Q Consensus 49 V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~ 101 (373)
|..|.|+|||+++||++||+|++|||+++.+ |.++...+. ++.+.++|.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence 5678999999999999999999999999999 999877774 466888886
No 46
>KOG3606|consensus
Probab=97.82 E-value=5.3e-05 Score=70.11 Aligned_cols=93 Identities=28% Similarity=0.430 Sum_probs=72.8
Q ss_pred cEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 9 PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 9 ~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
-|.|.|+|-+ +++||-|+.+.+- ...--|+ ...|+++|+...||+-|+.-| |-.+|.+++|||..|.+.+.+++
T Consensus 159 HRRVRL~khG~ekPLGFYIRDG~SV--RVtp~Gl-ekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV 235 (358)
T KOG3606|consen 159 HRRVRLHKHGSEKPLGFYIRDGTSV--RVTPHGL-EKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV 235 (358)
T ss_pred hhheehhhcCCCCCceEEEecCceE--Eeccccc-cccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence 3558888876 5799999876321 1111222 345899999999999999999 67899999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEecC
Q psy2827 86 VELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~ 104 (373)
.+++-.....+.+||....
T Consensus 236 TDMMvANshNLIiTVkPAN 254 (358)
T KOG3606|consen 236 TDMMVANSHNLIITVKPAN 254 (358)
T ss_pred HHHHhhcccceEEEecccc
Confidence 9998876677888886543
No 47
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.77 E-value=4.9e-05 Score=80.41 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=49.2
Q ss_pred eEEEEecCCCHHHHc-CCCCCCEEEEEC--CE---EcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827 47 QHVSAVLAGGAAEKA-GIRKGDRILAVN--NV---NVEGATHKQVVELIKS-GGDVLSLTVISV 103 (373)
Q Consensus 47 ~~V~~V~~gspA~~a-GL~~GD~Il~In--G~---~v~~~s~~~~~~~i~~-~g~~v~l~V~r~ 103 (373)
+.|..|.|||||+++ ||++||+|++|| |. .+.+++.++++.+|+. .|..|.|+|.+.
T Consensus 257 ~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 257 TVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred EEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 478999999999998 899999999999 43 4556778899999987 689999999873
No 48
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=97.76 E-value=5.8e-05 Score=61.30 Aligned_cols=69 Identities=39% Similarity=0.604 Sum_probs=55.0
Q ss_pred CCcccee-cccccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHHHHHH
Q psy2827 135 IPDYSYV-NTEDESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEIYLEK 183 (373)
Q Consensus 135 i~~~~~~-~~~~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~yl~~ 183 (373)
+|++... +..+..|++|+|+..|...+.+| .+..-++.||.||+.||+.
T Consensus 4 I~~~~~~~~~~~~~y~~Y~I~v~~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ 83 (104)
T cd06885 4 IPDTQELSDEGGSTYVAYNIHINGVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLPLTPAQLEERRLQLEKYLQA 83 (104)
T ss_pred cCCcceeccCCCCcEEEEEEEECCcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 4444433 33677889998888888777766 3444459999999999999
Q ss_pred HhchhhhhhhHHHHHHHHHh
Q psy2827 184 VCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 184 v~~~~~i~~s~~~~~FL~~~ 203 (373)
+++++.+.+|..+++||..+
T Consensus 84 l~~~~~l~~s~~~~~FL~~~ 103 (104)
T cd06885 84 VVQDPRIANSDIFNSFLLNA 103 (104)
T ss_pred HhcChhhccCHHHHHHHHhc
Confidence 99999999999999999875
No 49
>KOG3580|consensus
Probab=97.68 E-value=9.4e-05 Score=75.10 Aligned_cols=77 Identities=25% Similarity=0.432 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI 89 (373)
Q Consensus 10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i 89 (373)
+.|...|+ +..|+.+.|+.+ -+++|..|.+|+||++-||+.||+|+.||.++..++..++++..+
T Consensus 409 k~VrF~KG-dSvGLRLAGGND--------------VGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfL 473 (1027)
T KOG3580|consen 409 KMVRFKKG-DSVGLRLAGGND--------------VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFL 473 (1027)
T ss_pred eeEEeecC-CeeeeEeccCCc--------------eeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHH
Confidence 44555444 678999988743 357899999999999999999999999999999999999999988
Q ss_pred Hh--CCCeEEEEEE
Q psy2827 90 KS--GGDVLSLTVI 101 (373)
Q Consensus 90 ~~--~g~~v~l~V~ 101 (373)
-. +|+.+++.-.
T Consensus 474 L~lPkGEevtilaQ 487 (1027)
T KOG3580|consen 474 LELPKGEEVTILAQ 487 (1027)
T ss_pred hcCCCCcEEeehhh
Confidence 87 6887776543
No 50
>KOG3129|consensus
Probab=97.68 E-value=0.00016 Score=64.71 Aligned_cols=82 Identities=26% Similarity=0.432 Sum_probs=57.7
Q ss_pred CCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC-CHHHHHHHHHh-CCCeEEEEEEecCccccccCCCCCCCCCee
Q psy2827 44 APLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA-THKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPDDHSGYQ 121 (373)
Q Consensus 44 ~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~-s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~ 121 (373)
.|-++|.+|.|+|||++|||+.||.|+++.++.-.+. +...+....+. .+..+.++|.|-+......+.| ...++.+
T Consensus 138 ~~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP-~~W~GrG 216 (231)
T KOG3129|consen 138 RPFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTP-KKWQGRG 216 (231)
T ss_pred cceEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCc-ccccCCc
Confidence 4567899999999999999999999999988776551 12333344444 5889999998866544433333 2345666
Q ss_pred eeeee
Q psy2827 122 QIDYT 126 (373)
Q Consensus 122 ~iGi~ 126 (373)
.+|..
T Consensus 217 LLGC~ 221 (231)
T KOG3129|consen 217 LLGCN 221 (231)
T ss_pred ceeee
Confidence 77654
No 51
>KOG0606|consensus
Probab=97.56 E-value=0.00018 Score=78.04 Aligned_cols=84 Identities=32% Similarity=0.515 Sum_probs=69.4
Q ss_pred EEEEEcCCCCccEEEEecccCCCccccccc--cccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSING--ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 11 ~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~--~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
.+++.+++.+|||++..- +...| +.|.-.-.|.+|.++|||..+|+++||.|+.+||+++..+.|.+++++
T Consensus 629 pI~i~~~~~~yGft~~ai-------rVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~L 701 (1205)
T KOG0606|consen 629 PITIHFSGKKYGFTLRAI-------RVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMEL 701 (1205)
T ss_pred ceeeeccccccCceeeeE-------EEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHH
Confidence 489999999999998653 22222 234434468999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEEE
Q psy2827 89 IKSGGDVLSLTVI 101 (373)
Q Consensus 89 i~~~g~~v~l~V~ 101 (373)
+-+.|..+.+++.
T Consensus 702 ll~~gn~v~~~tt 714 (1205)
T KOG0606|consen 702 LLKSGNKVTLRTT 714 (1205)
T ss_pred HHhcCCeeEEEee
Confidence 9988888877764
No 52
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.53 E-value=0.00021 Score=72.19 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=50.1
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.+..|..|.++|||++||+++||+|+++||.++.+ +.++...+.....++.+++.|..
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~--~~dl~~~ia~~~~~v~~~I~r~g 185 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPG--FKDVRQQIADIAGEPMVEILAER 185 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhhcccceEEEEEec
Confidence 34579999999999999999999999999999999 99998888773377888887743
No 53
>KOG3571|consensus
Probab=97.52 E-value=0.00029 Score=70.45 Aligned_cols=83 Identities=29% Similarity=0.456 Sum_probs=66.5
Q ss_pred EEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 11 EVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 11 ~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
+|+|--..-. +|++|.|+....+ .-+++|+++.+||+-+..| +.+||.|++||.+..++++.++++..
T Consensus 252 TV~LnMe~vnfLGiSivgqsn~rg----------DggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrv 321 (626)
T KOG3571|consen 252 TVTLNMETVNFLGISIVGQSNARG----------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRV 321 (626)
T ss_pred EEEecccccccceeEeecccCcCC----------CCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHH
Confidence 4445444444 8999999743321 2467999999999988888 99999999999999999999999999
Q ss_pred HHh---CCCeEEEEEEec
Q psy2827 89 IKS---GGDVLSLTVISV 103 (373)
Q Consensus 89 i~~---~g~~v~l~V~r~ 103 (373)
+++ ...+++++|..+
T Consensus 322 LREaV~~~gPi~ltvAk~ 339 (626)
T KOG3571|consen 322 LREAVSRPGPIKLTVAKC 339 (626)
T ss_pred HHHHhccCCCeEEEEeec
Confidence 997 467799998754
No 54
>KOG3542|consensus
Probab=97.49 E-value=0.0002 Score=73.68 Aligned_cols=83 Identities=30% Similarity=0.498 Sum_probs=68.2
Q ss_pred CCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
-.++|.|.|.|.. .++-|.+.|+.+. .-+++|..|.||+.|+++|++.||+|++|||+..++.+..
T Consensus 533 KAK~RqviLtk~sre~pl~f~L~GGsEk------------GfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~ 600 (1283)
T KOG3542|consen 533 KAKPRQVILTKASREDPLMFRLVGGSEK------------GFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAK 600 (1283)
T ss_pred cccceeEEEecccccCCceeEeccCccc------------cceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHH
Confidence 3578999999743 5788998887443 2346899999999999999999999999999999998888
Q ss_pred HHHHHHHhCCCeEEEEEE
Q psy2827 84 QVVELIKSGGDVLSLTVI 101 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~ 101 (373)
.+.+++++ +..++++|.
T Consensus 601 KA~eiLrn-nthLtltvK 617 (1283)
T KOG3542|consen 601 KAEEILRN-NTHLTLTVK 617 (1283)
T ss_pred HHHHHhcC-CceEEEEEe
Confidence 88888876 355677765
No 55
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=97.28 E-value=0.00069 Score=52.86 Aligned_cols=81 Identities=23% Similarity=0.293 Sum_probs=62.8
Q ss_pred EEEEcCC---CceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc-ceeeccCcCCCCceeeeccccC-CC
Q psy2827 217 IKILLPD---REVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY-SFERKLEAKEFPHHLYIQNYST-AS 291 (373)
Q Consensus 217 l~nlLPD---Gg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~-~~~r~l~~~e~p~~~~~~~~~~-~~ 291 (373)
|.++..| |...++.+.+..++.++++.++.+.++ .. .-.-|+||..... ...|+|.++|.|+.++ +.+.. ..
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l-~~-~~~~y~L~ev~~~~~~er~L~~~e~pl~~~-~~~~~~~~ 78 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGL-DD-DPEDYALVEVLGDGGLERLLLPDECPLQIQ-LNAPRQRE 78 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCC-cC-CcccEEEEEEECCceEEEEeCCCCChHHHH-HhcCCCCC
Confidence 3455555 888899999999999999999999999 33 7789999988764 6899999999998632 23333 23
Q ss_pred CceEEEEee
Q psy2827 292 ATCLCIRKW 300 (373)
Q Consensus 292 ~~~~~lrk~ 300 (373)
..+++|||+
T Consensus 79 ~~~F~lr~~ 87 (87)
T cd01768 79 DLRFLLRKR 87 (87)
T ss_pred cEEEEEecC
Confidence 467888874
No 56
>KOG0609|consensus
Probab=96.91 E-value=0.0039 Score=63.25 Aligned_cols=81 Identities=26% Similarity=0.505 Sum_probs=68.6
Q ss_pred CcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
..|.|.+.|. +.++|.+++-... .+ ++|..+..|+.+++.| |..||.|.+|||..+.+.+..++
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~-------------~~-~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~ 187 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEED-------------TK-VVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEEL 187 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccC-------------Cc-cEEeeeccCCcchhccceeeccchheecCeecccCCHHHH
Confidence 4677888888 6789999987632 11 3799999999999999 78999999999999999889999
Q ss_pred HHHHHhCCCeEEEEEEe
Q psy2827 86 VELIKSGGDVLSLTVIS 102 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r 102 (373)
..++++....+++.+..
T Consensus 188 q~~l~~~~G~itfkiiP 204 (542)
T KOG0609|consen 188 QELLRNSRGSITFKIIP 204 (542)
T ss_pred HHHHHhCCCcEEEEEcc
Confidence 99999966888888763
No 57
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=96.91 E-value=0.0016 Score=53.91 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=38.2
Q ss_pred ccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhh
Q psy2827 311 VANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEIT 356 (373)
Q Consensus 311 ~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l 356 (373)
+. |+++.+|+|.|++.||.+|.+.++ +...+|+||+-+-.-..|-
T Consensus 5 ~~-d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~ 50 (126)
T PF00373_consen 5 ID-DPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYN 50 (126)
T ss_dssp TT-SHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSST
T ss_pred cC-CHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 45 899999999999999999999987 8999999999875554444
No 58
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=96.89 E-value=0.0044 Score=48.59 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=60.0
Q ss_pred CCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC-CceEEEEe
Q psy2827 222 PDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS-ATCLCIRK 299 (373)
Q Consensus 222 PDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~-~~~~~lrk 299 (373)
|++...++.+..+.++.++++.+++++++ ... ...|+||........|+|.+.|+|+.+. .++.... ...+.||+
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l-~~~-~~~y~L~e~~~~~~er~L~~~e~Pl~~~-~~~~~~~~~~~f~lr~ 88 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHL-TDD-PEEYVLVEVLPDGKERVLPDDENPLQLQ-KLWPRRGPNLRFVLRK 88 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCC-CCC-cccEEEEEEeCCcEEEEeCCCCcceEeh-hhCCCCCCcEEEEEEe
Confidence 66999999999999999999999999999 333 7889999998778899999999998732 3333332 34577775
No 59
>KOG3938|consensus
Probab=96.89 E-value=0.0018 Score=60.02 Aligned_cols=86 Identities=23% Similarity=0.473 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
+-+...++.|.+.|+.+.||++|... |.- ..+|..+.+||.-.+.. ++.||.|-+|||+.+-++.
T Consensus 121 AHvkGq~kEv~v~KsedalGlTITDN-----------G~G---yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~R 186 (334)
T KOG3938|consen 121 AHVKGQAKEVEVVKSEDALGLTITDN-----------GAG---YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKR 186 (334)
T ss_pred hhhcCcceeEEEEecccccceEEeeC-----------Ccc---eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchh
Confidence 44556788999999999999999865 111 24799999999887766 8999999999999999999
Q ss_pred HHHHHHHHHh--CCCeEEEEEEe
Q psy2827 82 HKQVVELIKS--GGDVLSLTVIS 102 (373)
Q Consensus 82 ~~~~~~~i~~--~g~~v~l~V~r 102 (373)
|.++..++++ .|++.++.+..
T Consensus 187 HYeVArmLKel~rge~ftlrLie 209 (334)
T KOG3938|consen 187 HYEVARMLKELPRGETFTLRLIE 209 (334)
T ss_pred HHHHHHHHHhcccCCeeEEEeec
Confidence 9999999998 57877776653
No 60
>KOG3605|consensus
Probab=96.88 E-value=0.0013 Score=67.77 Aligned_cols=69 Identities=32% Similarity=0.620 Sum_probs=57.2
Q ss_pred CCCCcE-EEEEEcCCC--CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827 5 QQTGPR-EVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 5 ~~~~~r-~v~l~r~~~--g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s 81 (373)
+++.|. +|.|.|-.. -+||++..+ +|-++..|+-|++.|++.|.+|++|||+.|-..+
T Consensus 732 V~cpPV~~V~I~RPd~kyQLGFSVQNG-------------------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~p 792 (829)
T KOG3605|consen 732 VSCPPVTTVLIRRPDLRYQLGFSVQNG-------------------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATP 792 (829)
T ss_pred ecCCCceEEEeecccchhhccceeeCc-------------------EeehhhcccchhccCceeeeeEEEECCceEEecc
Confidence 445554 455555543 489999776 6889999999999999999999999999998888
Q ss_pred HHHHHHHHHhC
Q psy2827 82 HKQVVELIKSG 92 (373)
Q Consensus 82 ~~~~~~~i~~~ 92 (373)
|+.+++++.++
T Consensus 793 HekIV~lLs~a 803 (829)
T KOG3605|consen 793 HEKIVQLLSNA 803 (829)
T ss_pred HHHHHHHHHHh
Confidence 99999999885
No 61
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=96.84 E-value=0.0032 Score=49.31 Aligned_cols=83 Identities=23% Similarity=0.246 Sum_probs=64.6
Q ss_pred eEEEEEcCCCc----eEEEEEEecCCHHHHHHHhccccCCCchhhhchhhee-eeeccceeeccCcCCCCceeeeccccC
Q psy2827 215 VDIKILLPDRE----VITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLF-EIVEYSFERKLEAKEFPHHLYIQNYST 289 (373)
Q Consensus 215 l~l~nlLPDGg----~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf-~~~~~~~~r~l~~~e~p~~~~~~~~~~ 289 (373)
-.|.++.+|+. ..++.+-...++.++++.++.+.++ .....-|+|+ .....+..|.|.++|+|+.+. ..+..
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l--~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~-~~~~~ 79 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL--AEDPSDYCLVEVEESGGEERPLDDDECPLQIQ-LQWPK 79 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT--SSSGGGEEEEEEECTTTEEEEETTTSBHHHHH-HTTSS
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC--CCCCCCEEEEEEEcCCCEEEEcCCCCchHHHH-HhCcc
Confidence 46788888888 8899999999999999999999999 4555667887 445678899999999998733 33333
Q ss_pred CC-CceEEEEee
Q psy2827 290 AS-ATCLCIRKW 300 (373)
Q Consensus 290 ~~-~~~~~lrk~ 300 (373)
.. ..+++||+.
T Consensus 80 ~~~~~~f~lr~~ 91 (93)
T PF00788_consen 80 DSQNSRFVLRRK 91 (93)
T ss_dssp GTTTEEEEEEEC
T ss_pred ccCceEEEEEEc
Confidence 22 456888874
No 62
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0054 Score=60.33 Aligned_cols=59 Identities=36% Similarity=0.441 Sum_probs=52.9
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.++.|..|.+++||+++|++.||.|+++||.++.+ ..++...+.. .|..+.+++.|.+.
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECCE
Confidence 45689999999999999999999999999999999 8999888877 48899999988643
No 63
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.73 E-value=0.0037 Score=49.09 Aligned_cols=47 Identities=30% Similarity=0.442 Sum_probs=34.4
Q ss_pred CCHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827 55 GGAAEKAG--IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV 103 (373)
Q Consensus 55 gspA~~aG--L~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~ 103 (373)
.||-.+.| +++||.|++|||+++.. -.++..++.. +|+.+.|+|.+.
T Consensus 30 ~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv~~~ 79 (88)
T PF14685_consen 30 RSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTVNRK 79 (88)
T ss_dssp B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEEE-S
T ss_pred cCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEEecC
Confidence 47888888 56999999999999987 5677788887 799999999864
No 64
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=96.64 E-value=0.0029 Score=53.12 Aligned_cols=38 Identities=29% Similarity=0.587 Sum_probs=34.0
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
+.+-++.||.||+.||+.++++|.+.+|..+++||..-
T Consensus 70 ~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~ 107 (125)
T cd06862 70 EEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCT 107 (125)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCc
Confidence 44456899999999999999999999999999999764
No 65
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.49 E-value=0.0082 Score=57.33 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=58.8
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEe-cCccc--cccCCCCCCCCCe
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVIS-VSPEE--AERLEPPDDHSGY 120 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r-~~~~~--~~~~~~~~~~~~~ 120 (373)
++++..|..++|+. .-|..||.|++|||+++.+ .+++.+++++ .|+.+++++.| .++.. ..++... +..+.
T Consensus 131 gvyv~~v~~~~~~~-gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~-~~~g~ 206 (342)
T COG3480 131 GVYVLSVIDNSPFK-GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKN-DDNGK 206 (342)
T ss_pred eEEEEEccCCcchh-ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEee-ccCCc
Confidence 45688888899986 3399999999999999999 9999999987 69999999986 33322 2222222 23455
Q ss_pred eeeeeeec
Q psy2827 121 QQIDYTEK 128 (373)
Q Consensus 121 ~~iGi~~~ 128 (373)
..||++..
T Consensus 207 ~giGIsl~ 214 (342)
T COG3480 207 AGIGISLV 214 (342)
T ss_pred ceeeeEee
Confidence 67888753
No 66
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=96.42 E-value=0.0059 Score=50.21 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=33.5
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.+...++.||.||+.||+.+++++.+.+|..+++||.
T Consensus 74 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 110 (112)
T cd07301 74 FTAETIAKRSRAFEQFLCHLHSLPELRASPAFLEFFY 110 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhC
Confidence 4555669999999999999999999999999999985
No 67
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=96.38 E-value=0.0063 Score=49.98 Aligned_cols=37 Identities=19% Similarity=0.472 Sum_probs=33.3
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.+..-+++|+.||+.||+.++++|.+.+|..+++||.
T Consensus 74 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 110 (112)
T cd07279 74 FSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQ 110 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhC
Confidence 3555669999999999999999999999999999985
No 68
>KOG3530|consensus
Probab=96.31 E-value=0.019 Score=58.92 Aligned_cols=144 Identities=17% Similarity=0.119 Sum_probs=108.9
Q ss_pred ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC
Q psy2827 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS 291 (373)
Q Consensus 212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~ 291 (373)
...+--.++|-||..+++.+-+...-...++.++..+.| .=.-||+|--.- ..-.+.++|.--|.. ..-...+
T Consensus 8 k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl---~E~DYFGLry~D-~~~~~hWLD~tK~I~---kqvK~gp 80 (616)
T KOG3530|consen 8 KKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDL---IEKDYFGLRYQD-SSKVRHWLDPTKSIK---KQVKIGP 80 (616)
T ss_pred CcceEEEEEEecCccceeccCcccchHHHHHHHHHhhce---eeeeccceeeec-hhhcceecCcchhHH---HHhccCC
Confidence 344778889999999999988888889999999999977 666778775432 223455555555522 1112223
Q ss_pred CceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhhhhccCCCcc
Q psy2827 292 ATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEITTGSCNPNRA 365 (373)
Q Consensus 292 ~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l~l~~~~~~~ 365 (373)
..++.||.-|| |+++..|.+ +.+--.+|.|--.||..|++.|. +.+.+|.||--|.---+|=+--|-|+|.
T Consensus 81 pytL~~rVKfY-~sdP~~Lre--e~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yV 152 (616)
T KOG3530|consen 81 PYTLHLRVKFY-PSDPNNLRE--ENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYV 152 (616)
T ss_pred CeEEEEEEEec-cCChhhhhc--hhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccce
Confidence 45788998888 888887766 88888999999999999999987 9999999998887777776666666654
No 69
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=96.31 E-value=0.007 Score=49.96 Aligned_cols=38 Identities=32% Similarity=0.555 Sum_probs=33.7
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
.+.+-+++||.||+.||+.+++.+.+.+|..+++||..
T Consensus 74 ~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~ 111 (114)
T cd07300 74 FSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTH 111 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCC
Confidence 45555699999999999999999999999999999864
No 70
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=96.29 E-value=0.0057 Score=50.21 Aligned_cols=33 Identities=21% Similarity=0.463 Sum_probs=30.7
Q ss_pred HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
-++.||.||+.||+.+++++.+.+|+.+++||.
T Consensus 78 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 110 (112)
T cd06867 78 IIERRKRMLQRFLNRCLQHPILRNDIVFQKFLD 110 (112)
T ss_pred HHHHHHHHHHHHHHHHhcChhhccCcHHHHhcC
Confidence 349999999999999999999999999999984
No 71
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=95.89 E-value=0.014 Score=47.65 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=32.7
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
+..-++.||.||+.||+.+++++.+.+|+.+++||..
T Consensus 72 ~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~ 108 (109)
T cd06870 72 DPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQM 108 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCc
Confidence 3444599999999999999999999999999999853
No 72
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=95.75 E-value=0.012 Score=49.04 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.0
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.+..-+++||.||+.||+.+++++.+.+|+.+.+||.
T Consensus 81 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~ 117 (119)
T cd06877 81 KSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLS 117 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCC
Confidence 4445569999999999999999999999999999984
No 73
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.71 E-value=0.027 Score=53.48 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=44.1
Q ss_pred EecCCCH---HHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 51 AVLAGGA---AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 51 ~V~~gsp---A~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
.+.||.. -.++||++||.+++|||.++.+ .++..++++. ....++++|+|.+..
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEE
Confidence 4566643 3678999999999999999998 8888888876 468899999997653
No 74
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.53 E-value=0.029 Score=57.13 Aligned_cols=48 Identities=29% Similarity=0.535 Sum_probs=36.0
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r 102 (373)
..|..|.++|||..|||.+||+|++|||..-. +.+ -+.++.+.+++.+
T Consensus 464 ~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~---l~~-----~~~~d~i~v~~~~ 511 (558)
T COG3975 464 EKITFVFPGGPAYKAGLSPGDKIVAINGISDQ---LDR-----YKVNDKIQVHVFR 511 (558)
T ss_pred eEEEecCCCChhHhccCCCccEEEEEcCcccc---ccc-----cccccceEEEEcc
Confidence 36899999999999999999999999999110 111 0256777777654
No 75
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.46 E-value=0.041 Score=41.85 Aligned_cols=79 Identities=20% Similarity=0.143 Sum_probs=52.8
Q ss_pred EEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCCceEEEE
Q psy2827 219 ILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIR 298 (373)
Q Consensus 219 nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~~~~~lr 298 (373)
+.||||..+.+++....+..+.++.++.++|+ .-..||+|+.....+-.....+.+.|..- |.........+.||
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l---~e~~~FgL~~~~~~~~~~~wL~~~k~l~~--q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGL---KEKEYFGLQYQVDKDGEHHWLDLDKKLKK--QLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTT---SSGGGEEEEE-EBTTSSEEEE-SSSBGGG--STBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCC---CCccEEEEEEeecCCCcceeccCcccHHH--HcCCCCCCEEEEEE
Confidence 46899999999999999999999999999999 45678888882222223344455555321 22121223458888
Q ss_pred eecc
Q psy2827 299 KWLF 302 (373)
Q Consensus 299 k~~~ 302 (373)
+-||
T Consensus 76 vkfy 79 (80)
T PF09379_consen 76 VKFY 79 (80)
T ss_dssp ESS-
T ss_pred EEEC
Confidence 8776
No 76
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=95.42 E-value=0.016 Score=47.24 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=32.2
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
...+++|+.||+.||+.+++.|.|++|+.+++||.
T Consensus 71 ~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~ 105 (107)
T cd06872 71 GAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence 44569999999999999999999999999999985
No 77
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=95.41 E-value=0.031 Score=46.41 Aligned_cols=35 Identities=37% Similarity=0.568 Sum_probs=31.7
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
..-++.|+.+|+.||+.+++.+.+.+|..+++||.
T Consensus 85 ~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 85 KAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence 44459999999999999999999999999999984
No 78
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=95.36 E-value=0.02 Score=46.96 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=32.2
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+..-++.||.||+.||+.++++|.+.+|..+++||.
T Consensus 75 ~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 110 (112)
T cd06861 75 DDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLE 110 (112)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCcccccCcHHHHhcC
Confidence 344459999999999999999999999999999985
No 79
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.17 E-value=0.098 Score=48.17 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=42.2
Q ss_pred CCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 55 gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
++.-+..||+.||..+++|+..+.+ .+++..+++. .-..+.+||+|.+..
T Consensus 217 ~slF~~sglq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 217 GSLFYKSGLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred cchhhhhcCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecCcc
Confidence 4556778999999999999999999 8999888887 457899999986653
No 80
>KOG3532|consensus
Probab=95.00 E-value=0.062 Score=56.02 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=44.0
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~ 101 (373)
+.|..|.+++||.++.+++||.+++|||++|.+ ..++...++.....+...++
T Consensus 400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~ 452 (1051)
T KOG3532|consen 400 VKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVE 452 (1051)
T ss_pred EEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEe
Confidence 457899999999999999999999999999998 88999999984333333333
No 81
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=94.99 E-value=0.032 Score=45.32 Aligned_cols=35 Identities=43% Similarity=0.701 Sum_probs=31.6
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
..-+++||.||+.||+.++++|.+.+|..+++||.
T Consensus 69 ~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~ 103 (105)
T cd06866 69 REFLEARRRGLSRFLNLVARHPVLSEDELVRTFLT 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcC
Confidence 33458999999999999999999999999999985
No 82
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=94.77 E-value=0.051 Score=42.18 Aligned_cols=82 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee-ccceeeccCcCCCCceeeeccccCCCC
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV-EYSFERKLEAKEFPHHLYIQNYSTASA 292 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~-~~~~~r~l~~~e~p~~~~~~~~~~~~~ 292 (373)
.+-+.++++||...++++..+-++.++.+.++.+.++ ..-...+|+.-. +..++|-+.|+|..-. +.+.+...+.
T Consensus 2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~---~~~~~W~LvE~~P~l~lER~~EDHE~vvd-vl~~W~~~~~ 77 (85)
T cd01787 2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHC---QDDSSWTLVEHLPHLQLERLFEDHELVVE-VLSTWHSAGN 77 (85)
T ss_pred ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCC---CCCCCeEEEEecchhhhhhhccchHHHHH-HHHhcccCCC
Confidence 3678999999999999999999999999999999998 445566777665 4678999999998754 3455555455
Q ss_pred ceEEEEe
Q psy2827 293 TCLCIRK 299 (373)
Q Consensus 293 ~~~~lrk 299 (373)
+.+.|||
T Consensus 78 n~l~f~k 84 (85)
T cd01787 78 SVLFFRK 84 (85)
T ss_pred cEEEEec
Confidence 6688887
No 83
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=94.72 E-value=0.029 Score=47.52 Aligned_cols=35 Identities=37% Similarity=0.680 Sum_probs=32.1
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
.-+++||.||+.||+.+++.+.+.+|+.+++||..
T Consensus 97 ~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 97 DKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 34599999999999999999999999999999964
No 84
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=94.52 E-value=0.11 Score=40.37 Aligned_cols=61 Identities=25% Similarity=0.390 Sum_probs=53.1
Q ss_pred EEcCC-CceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCce
Q psy2827 219 ILLPD-REVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHH 281 (373)
Q Consensus 219 nlLPD-Gg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~ 281 (373)
.++|- |..-.+.+.+..++.+|++.+.++.-.. ..-.-|+||...+.+-.|||.+.|+|..
T Consensus 6 ~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~--~~p~~FALy~vh~~Ge~rkL~d~E~PL~ 67 (87)
T cd01784 6 VFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIE--NSAEEFALYIVHTSGEKRKLKATDYPLI 67 (87)
T ss_pred EeCCCCCceeEEEEecCCCHHHHHHHHHHhcccc--CCHHHeEEEEEeeCCCEEECCCcCCCee
Confidence 57886 7777899999999999999999998773 6668899999988888999999999964
No 85
>KOG1421|consensus
Probab=94.43 E-value=0.095 Score=54.83 Aligned_cols=55 Identities=31% Similarity=0.447 Sum_probs=48.8
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSP 105 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~ 105 (373)
+|..|.++|||++. |++||.+++||+..+.+ +.++.+++.+ .|+.+.|+|.|.+.
T Consensus 306 vV~~vL~~gpa~k~-Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggq 361 (955)
T KOG1421|consen 306 VVETVLPEGPAEKK-LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQ 361 (955)
T ss_pred EEEEeccCCchhhc-cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCE
Confidence 68899999999955 99999999999999988 8888888877 69999999998654
No 86
>KOG1320|consensus
Probab=94.41 E-value=0.098 Score=53.18 Aligned_cols=54 Identities=31% Similarity=0.426 Sum_probs=45.8
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCeEEEEEE
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVI 101 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~--g~~v~l~V~ 101 (373)
++.+..|.+++++..+++.+||+|.+|||++|.+ ..++..+++.+ ++.+.+...
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~ 454 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDR 454 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEe
Confidence 4578899999999999999999999999999999 89999999984 334544443
No 87
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=94.38 E-value=0.031 Score=46.73 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=30.5
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
++.||.||+.||+.++++|.+.+|..+++||.
T Consensus 91 ie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~ 122 (124)
T cd07281 91 LERRRAALERYLQRIVSHPSLLQDPDVREFLE 122 (124)
T ss_pred HHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 48999999999999999999999999999985
No 88
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=94.34 E-value=0.082 Score=43.93 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=31.8
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
.+..-++.|+.||+.||+.+.+++.++++..+++++..
T Consensus 78 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~ 115 (120)
T cd06873 78 LDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLD 115 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHH
Confidence 44556699999999999999999999999777766654
No 89
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=94.22 E-value=0.036 Score=45.62 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=31.3
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.-++.||.||+.||+.++++|.+.+|+.++.||.
T Consensus 78 ~fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~ 111 (113)
T cd06898 78 GFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQ 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHcChhhccChHHHHhcc
Confidence 3459999999999999999999999999999985
No 90
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=94.17 E-value=0.045 Score=46.53 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.1
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.+-+++||.||+.||+++.+++.+.+|..+++||.
T Consensus 102 ~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLe 136 (138)
T cd06879 102 RALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLE 136 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhC
Confidence 44569999999999999999999999999999985
No 91
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=94.05 E-value=0.051 Score=44.93 Aligned_cols=37 Identities=30% Similarity=0.668 Sum_probs=32.3
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhh-hhHHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIA-ESELMQEFLTD 202 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~-~s~~~~~FL~~ 202 (373)
+..-++.||.||+.||+.++++|.+. +|+.+.+||..
T Consensus 76 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~ 113 (116)
T cd07295 76 SDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQD 113 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCC
Confidence 34456999999999999999999998 69999999864
No 92
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=93.92 E-value=0.048 Score=45.98 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=31.8
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
..-++.||.||+.||+.++++|.+.+|+.+.+||.
T Consensus 93 ~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~ 127 (129)
T cd06864 93 PDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLT 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcC
Confidence 34459999999999999999999999999999985
No 93
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=93.84 E-value=0.063 Score=44.72 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=31.7
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
.-++.||.||+.||+.+++++.+.+|+.+.+||..
T Consensus 85 ~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 85 SDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 34589999999999999999999999999999853
No 94
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=93.77 E-value=0.11 Score=43.78 Aligned_cols=37 Identities=32% Similarity=0.636 Sum_probs=32.8
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
...=++.||.||+.||++|++.|.+..|..++.||..
T Consensus 70 ~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~ 106 (127)
T cd07286 70 EEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTC 106 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcC
Confidence 3333489999999999999999999999999999975
No 95
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=93.75 E-value=0.0013 Score=58.77 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred HHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee
Q psy2827 199 FLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV 265 (373)
Q Consensus 199 FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~ 265 (373)
++..+ +. + ++++||+| |||++ .++..++++.+.......+..|+..+..++.+++++|.
T Consensus 115 ~~~~~-n~-~------l~~fNLlPippLDGg~il~~~~~~~~~~~~~~~~~~~~~~~g~~ill~l~~~~~~~d~ 180 (182)
T cd06163 115 FLALL-SI-N------LGILNLLPIPALDGGHLLFLLIEAIRGRPLSEKVEEIIQTIGFALLLGLMLFVTFNDI 180 (182)
T ss_pred HHHHH-HH-H------HHHHHcCCCCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555 55 5 89999999 99999 77788889988888888999999888888999998874
No 96
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=93.72 E-value=0.06 Score=45.28 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.6
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+...++.||.||+.||+.+.+++.+.+|+.+.+||.
T Consensus 90 ~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLs 125 (127)
T cd06878 90 DKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLS 125 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcC
Confidence 445669999999999999999999999999999984
No 97
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=93.68 E-value=0.07 Score=44.14 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=33.1
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
+..-+++||.||+.||+.|++++.+.+|+.|++||..
T Consensus 80 ~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 80 DAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 4445699999999999999999999999999999853
No 98
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=93.31 E-value=0.063 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=30.4
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
++.||.||+.||++++++|.+.+|..++.||.
T Consensus 91 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 122 (124)
T cd07282 91 VEKRRAALERYLQRTVKHPTLLQDPDLRQFLE 122 (124)
T ss_pred HHHHHHHHHHHHHHHhcCcccccChHHHHhhc
Confidence 48999999999999999999999999999985
No 99
>PF12812 PDZ_1: PDZ-like domain
Probab=93.19 E-value=0.27 Score=37.65 Aligned_cols=42 Identities=29% Similarity=0.305 Sum_probs=37.7
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS 91 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~ 91 (373)
++.....|+++...|+..|-.|.+|||+++.+ .+++.+.+++
T Consensus 33 v~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ 74 (78)
T PF12812_consen 33 VYVAVSGGSLAFAGGISKGFIITSVNGKPTPD--LDDFIKVVKK 74 (78)
T ss_pred EEEEecCCChhhhCCCCCCeEEEeECCcCCcC--HHHHHHHHHh
Confidence 56677888999877799999999999999999 9999999987
No 100
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=93.14 E-value=0.091 Score=42.58 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=32.4
Q ss_pred chhHHHHHhhcHHHHHHHHhchh--hhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVR--VIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~--~i~~s~~~~~FL~ 201 (373)
+..-++.|+.+|+.||+.+++.+ .+.+|..+.+||.
T Consensus 69 ~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~ 106 (108)
T cd06897 69 NPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLN 106 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhC
Confidence 34456999999999999999999 9999999999985
No 101
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=93.00 E-value=0.49 Score=38.25 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=47.2
Q ss_pred CCceE---EEEEEecCCHHHHHHHhccccCCC-chhhhchhheeeeeccceeeccCcCCCCceeeecc
Q psy2827 223 DREVI---TVSVRKSATADEVYASAVPKLYLQ-SPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQN 286 (373)
Q Consensus 223 DGg~i---~ie~~~~~~~~~~~~~~~~~igl~-~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~ 286 (373)
.|+++ -|.+.+..++.+|++.+.++.-.- .+..--=|+||...+.+-.|||.+.|.|.+ ++.
T Consensus 31 ~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~PL~--~RL 96 (112)
T cd01782 31 GGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEKPLV--VQL 96 (112)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCCCeE--Eee
Confidence 45566 455556789999999999998741 123345899999998888999999999964 554
No 102
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=92.67 E-value=0.081 Score=44.24 Aligned_cols=36 Identities=25% Similarity=0.517 Sum_probs=32.3
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+..-++.||+||+.||+.+++.|.+.+|..+..||.
T Consensus 84 ~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~ 119 (123)
T cd07293 84 DDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQ 119 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcC
Confidence 344569999999999999999999999999999985
No 103
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=92.55 E-value=0.57 Score=37.23 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=49.4
Q ss_pred EEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec---cceeeccCcCCCCce
Q psy2827 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE---YSFERKLEAKEFPHH 281 (373)
Q Consensus 218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~---~~~~r~l~~~e~p~~ 281 (373)
-=+||-|..-.+.+.+..++.++++.+.+++.+ ...-.-||||.... ....|||.+.|+|..
T Consensus 10 sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v--~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL~ 74 (96)
T cd01778 10 SLPLPKDTAKHLHISSKTTVREVIEALLKKFLV--VDNPRKFALFEREHRTGQVYLRKLSDDECPLY 74 (96)
T ss_pred EEeccCCceeEEEEecCCcHHHHHHHHHHhhee--ccCCcceEEEEEEecCCcEEEEECCCCCCCeE
Confidence 346788888889999999999999999999986 23345789997642 235799999999964
No 104
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=92.33 E-value=0.1 Score=43.43 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=31.8
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
+-++.||.||+.||+.++.++.+.+|..++.||..
T Consensus 85 ~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 85 EFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 34599999999999999999999999999999853
No 105
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=92.24 E-value=0.12 Score=42.76 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=32.3
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+..-++.||.||+.||+.+++.|.+.+|..++.||.
T Consensus 79 ~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt 114 (116)
T cd06860 79 SPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLT 114 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 334459999999999999999999999999999985
No 106
>KOG2527|consensus
Probab=92.21 E-value=0.14 Score=42.82 Aligned_cols=34 Identities=29% Similarity=0.640 Sum_probs=30.7
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
+|+||+||+.||++|++.+.+-++.-+.-||...
T Consensus 97 IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~ 130 (144)
T KOG2527|consen 97 IEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE 130 (144)
T ss_pred HHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence 3999999999999999999999888888888764
No 107
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=92.16 E-value=0.13 Score=42.71 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.3
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.=+++||.||+.||+.++++|.+.+|..+.+||.
T Consensus 83 ~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~ 116 (118)
T cd07288 83 AVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHh
Confidence 3459999999999999999999999999999985
No 108
>KOG4407|consensus
Probab=92.00 E-value=0.24 Score=55.28 Aligned_cols=52 Identities=37% Similarity=0.561 Sum_probs=41.8
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEE
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLT 99 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~ 99 (373)
++..|.+++||.-+.|+.||+++.||..++.++...+++..+++.--.+++.
T Consensus 146 ~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~ 197 (1973)
T KOG4407|consen 146 FIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLH 197 (1973)
T ss_pred hhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCce
Confidence 5677899999999999999999999999998888888888888743333333
No 109
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=91.99 E-value=0.11 Score=43.53 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=32.1
Q ss_pred HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
=++.|+.||+.||++|++.|.+.+++.++.||..-
T Consensus 74 FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~ 108 (126)
T cd07285 74 FIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFR 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCC
Confidence 34899999999999999999999999999999764
No 110
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=91.68 E-value=0.13 Score=42.50 Aligned_cols=36 Identities=19% Similarity=0.511 Sum_probs=32.2
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+..-++.||.||+.||+.++++|.+.+|..+..||.
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~ 116 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLE 116 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcC
Confidence 344568999999999999999999999999999985
No 111
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=91.56 E-value=0.18 Score=41.82 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=32.0
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
...-+++||.||+.||+.+.+.|.+.+|..+++||.
T Consensus 81 d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~ 116 (118)
T cd07287 81 DESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFK 116 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhc
Confidence 344559999999999999999999999999999984
No 112
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=91.50 E-value=0.21 Score=40.79 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=32.3
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
..-++.|+.||+.||+.+++++.+.+|..+++||..
T Consensus 74 ~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~ 109 (110)
T cd07276 74 PDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCL 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhcc
Confidence 344599999999999999999999999999999853
No 113
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=91.39 E-value=0.17 Score=41.82 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=31.3
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.-++.||+||+.||+.+++.|.+.+|..++.||.
T Consensus 81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt 114 (116)
T cd07283 81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLT 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence 3458999999999999999999999999999985
No 114
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=91.37 E-value=0.14 Score=43.32 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=31.9
Q ss_pred HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
=++.||+||+.||+++++.+.+.++..+..||..-
T Consensus 89 fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~ 123 (132)
T cd07294 89 FIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDE 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCC
Confidence 34999999999999999999999999999999753
No 115
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=91.26 E-value=0.17 Score=42.02 Aligned_cols=31 Identities=35% Similarity=0.498 Sum_probs=29.0
Q ss_pred HHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 171 DSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+.||.+|+.||+.+++++.+.+|+.+.+||.
T Consensus 87 E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~ 117 (119)
T cd06869 87 EKLRLSLRQYLRSLLKDPEVAHSSILQEFLT 117 (119)
T ss_pred HHHHHHHHHHHHHHhcChhhhcChHHHHhhC
Confidence 6788899999999999999999999999985
No 116
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=90.91 E-value=0.18 Score=42.08 Aligned_cols=36 Identities=28% Similarity=0.601 Sum_probs=32.2
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
..-++.||.||+.||+.++++|.+.+|..+..||..
T Consensus 85 ~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~ 120 (123)
T cd06894 85 EEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQE 120 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCC
Confidence 334599999999999999999999999999999864
No 117
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=90.90 E-value=0.22 Score=41.42 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=33.1
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
..-++.||.||+.||+.+.+.+.+.+|..+.+||..-
T Consensus 74 ~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 110 (120)
T cd06871 74 REFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPN 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcc
Confidence 4456999999999999999999999999999999644
No 118
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.74 E-value=0.38 Score=36.04 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=32.4
Q ss_pred EEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
..++||||.+..+.+..+.++.++++.++++-|+
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l 35 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL 35 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999
No 119
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=90.68 E-value=0.2 Score=41.42 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=30.7
Q ss_pred HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
-++.||.||+.||+.++..|.+..|+.++.||.
T Consensus 82 fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~ 114 (116)
T cd07284 82 FIETRRKALHKFLNRIADHPTLTFNEDFKIFLT 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccChHHHHhhc
Confidence 348999999999999999999999999999985
No 120
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=90.62 E-value=0.16 Score=41.48 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=30.2
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
++.|+.+|+.||+.+++++.+.+|+.+..||.
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~ 112 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLE 112 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcC
Confidence 48999999999999999999999999999984
No 121
>KOG1738|consensus
Probab=90.57 E-value=0.45 Score=49.49 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=54.8
Q ss_pred CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCe
Q psy2827 17 SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDV 95 (373)
Q Consensus 17 ~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~ 95 (373)
...|+|+.|....+ .+. +|..+.+++||...+ +..||.++.||+..+-++.+.-++..++....-
T Consensus 211 p~eglg~~I~Ssyd-------------g~h-~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sg 276 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYD-------------GPH-VTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAG 276 (638)
T ss_pred cccCCceEEeeecC-------------Cce-eccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccc
Confidence 34679999887743 122 688999999999988 899999999999998897777778777774344
Q ss_pred EEEEEE
Q psy2827 96 LSLTVI 101 (373)
Q Consensus 96 v~l~V~ 101 (373)
+.+++.
T Consensus 277 i~l~lk 282 (638)
T KOG1738|consen 277 IELTLK 282 (638)
T ss_pred ceeeee
Confidence 555554
No 122
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=90.31 E-value=0.22 Score=42.12 Aligned_cols=32 Identities=31% Similarity=0.657 Sum_probs=30.4
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
++.|+.+|+.||+.++..+.+++|+.+.+||.
T Consensus 101 ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 101 VEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 58999999999999999999999999999984
No 123
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=90.14 E-value=0.57 Score=38.28 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=29.9
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
...-+++||.||+.||+.++..+. .|..+.+||..-
T Consensus 67 ~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~ 102 (110)
T cd06880 67 NPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVR 102 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCC
Confidence 333459999999999999999998 588888898764
No 124
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=90.12 E-value=0.31 Score=38.77 Aligned_cols=34 Identities=38% Similarity=0.635 Sum_probs=30.9
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhh-hHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAE-SELMQEFL 200 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~-s~~~~~FL 200 (373)
..-++.|+.+|+.||+.+++++.+.+ |+.+.+||
T Consensus 70 ~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl 104 (105)
T smart00312 70 EEFIEKRRRGLERYLQSLLNHPELINESEVVLSFL 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhc
Confidence 34558999999999999999999999 99999997
No 125
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=89.88 E-value=0.39 Score=36.05 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=30.9
Q ss_pred EEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
+.++||||++..+.+..+.++.+.+..++++-|+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L 36 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGL 36 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCC
Confidence 6789999999999999999999999999999999
No 126
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=89.73 E-value=0.34 Score=40.00 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=33.7
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
..-++.||.||+.||+.+++.+.+++|..+.+||...
T Consensus 69 ~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~ 105 (116)
T cd06875 69 PSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFH 105 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCC
Confidence 3445999999999999999999999999999999876
No 127
>KOG3834|consensus
Probab=89.23 E-value=0.85 Score=45.50 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=52.7
Q ss_pred EEEEecCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCccccc--cCCCCCCCCCeeeee
Q psy2827 48 HVSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE--RLEPPDDHSGYQQID 124 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~-GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~~~~~--~~~~~~~~~~~~~iG 124 (373)
.|-.|.++|+|.+|||.+ -|-|++|||..+.. ..+.+..+++..-+.|+++|...+..... .+.+.+...+. ++|
T Consensus 18 hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggq-llG 95 (462)
T KOG3834|consen 18 HVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQ-LLG 95 (462)
T ss_pred EEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecccceeEEEEeccccccccc-ccc
Confidence 688999999999999876 89999999999975 13455566666445599998754332211 12222232333 678
Q ss_pred eeec
Q psy2827 125 YTEK 128 (373)
Q Consensus 125 i~~~ 128 (373)
++.+
T Consensus 96 vsvr 99 (462)
T KOG3834|consen 96 VSVR 99 (462)
T ss_pred eEEE
Confidence 7653
No 128
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=88.96 E-value=0.6 Score=35.21 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=32.5
Q ss_pred EEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
..++||||++-.+.+..+.++.++++.++.+-|+
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l 35 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGL 35 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999
No 129
>KOG3834|consensus
Probab=88.74 E-value=1.5 Score=43.78 Aligned_cols=86 Identities=29% Similarity=0.364 Sum_probs=59.3
Q ss_pred CCCcEEEEEEcCC-CC---ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCC-CCCEEEEECCEEcCCC
Q psy2827 6 QTGPREVQIAKSD-TG---FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR-KGDRILAVNNVNVEGA 80 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g---~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~-~GD~Il~InG~~v~~~ 80 (373)
....|.+.|.... .+ +|.+|+-....+.. .-..+|-+|.++|||+.|||. -+|.|+.+-..-...
T Consensus 75 t~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~---------~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~- 144 (462)
T KOG3834|consen 75 TQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAV---------ESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE- 144 (462)
T ss_pred cceeEEEEecccccccccccceEEEeccCccch---------hheeeeeecCCCCHHHhcccccccceEecchhhhccc-
Confidence 3455777776554 34 88888754221100 112368899999999999988 699999983333344
Q ss_pred CHHHHHHHHHh-CCCeEEEEEEe
Q psy2827 81 THKQVVELIKS-GGDVLSLTVIS 102 (373)
Q Consensus 81 s~~~~~~~i~~-~g~~v~l~V~r 102 (373)
.+|+..+|.. .++++.+-|..
T Consensus 145 -~eDl~~lIeshe~kpLklyVYN 166 (462)
T KOG3834|consen 145 -EEDLFTLIESHEGKPLKLYVYN 166 (462)
T ss_pred -hHHHHHHHHhccCCCcceeEee
Confidence 6888888887 68999988864
No 130
>KOG4257|consensus
Probab=88.47 E-value=0.62 Score=48.95 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=91.5
Q ss_pred EEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec----------cce-eeccCcCCCCceeeec
Q psy2827 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE----------YSF-ERKLEAKEFPHHLYIQ 285 (373)
Q Consensus 217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~----------~~~-~r~l~~~e~p~~~~~~ 285 (373)
..+.+|+|....|.+...+++..++..++.-+|+ .--.+..|+.-.... ... -+-|..--.||. |
T Consensus 5 ~rv~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~-~~~~~~~~acr~~t~i~~~~~~~~~S~~~~~~l~~i~lp~c-y-- 80 (974)
T KOG4257|consen 5 ARVFLPGGASKAVRYDVQTTIERVIHVVARGIGI-SQVAVAHFACRLVTGISPQTAGSGDSLWLHPMLRIIQLPHC-Y-- 80 (974)
T ss_pred cccccCCCcceeeeecchhheeeeeeeeeeccCC-Cchhhhheeeeeccccchhhhhhccccccchhhhhcccccc-c--
Confidence 4577899999999999999999999999999999 566666666655543 111 122344445554 2
Q ss_pred cccCC----CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccc--hhhHHHHHHHHhc
Q psy2827 286 NYSTA----SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRA--EDRLYELKALQDA 349 (373)
Q Consensus 286 ~~~~~----~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~--~~~~~~L~~lq~~ 349 (373)
+.... ....+-||--| .|..=-+|..+|..++-|+|.|-++|.-+-.... ++.+.||..|.-.
T Consensus 81 ~~~lp~~~s~ewr~elr~Ry-~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vr 149 (974)
T KOG4257|consen 81 ARHLPIGVSDEWRLELRMRY-MPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVR 149 (974)
T ss_pred cccCCCCcchhheeeeeeee-CcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11211 12345566555 4999899999999999999999999998876654 3899999998754
No 131
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=85.80 E-value=0.97 Score=35.95 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=31.7
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
...+++|+..|+.||+.+++.+.+.+|+.+.+||.
T Consensus 77 ~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~ 111 (113)
T PF00787_consen 77 PEFIEERRQALEKYLQSLLSHPELRSSEALKEFLE 111 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcC
Confidence 34459999999999999999999999999999985
No 132
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=85.75 E-value=0.84 Score=39.01 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=30.1
Q ss_pred HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
..+.||.+|+.||+.||++|++..++.++.||.
T Consensus 106 ~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLE 138 (140)
T cd06891 106 DARKLKANLQRWFNRVCSDPILIRDEELRFFIE 138 (140)
T ss_pred HHHHHHHHHHHHHHHHhCChhhccCHHHHHHhc
Confidence 447889999999999999999999999999983
No 133
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=84.72 E-value=1.9 Score=34.58 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=51.3
Q ss_pred EEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc----------ceeeccCcCCCCceeeeccccCCCCc-eE
Q psy2827 227 ITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY----------SFERKLEAKEFPHHLYIQNYSTASAT-CL 295 (373)
Q Consensus 227 i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~----------~~~r~l~~~e~p~~~~~~~~~~~~~~-~~ 295 (373)
.+|-+.+.+++++++..+..+.|| -..-.--|.|-.+.-. --.|-|.++|+|.. +..++....+. .+
T Consensus 18 KSIlvt~~~~a~~vV~eALeKygL-~~e~p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~E~Pl~-i~~~w~~~~g~~~f 95 (100)
T cd01781 18 KTILLSINDNADRIVGEALEKYGL-EKSDPDDYCLVEVSNDDDRKSSDLREIDERILDDDECPLF-IMTAGPGENGFDSF 95 (100)
T ss_pred EEEEecCCccHHHHHHHHHHHhCC-CccCccceEEEEEecccccccccccceeEEeCCCCcCHHH-HHHhCCCccCceee
Confidence 377777889999999999999999 6666777777776432 35788999999976 33455544333 35
Q ss_pred EEEe
Q psy2827 296 CIRK 299 (373)
Q Consensus 296 ~lrk 299 (373)
.|||
T Consensus 96 ~l~~ 99 (100)
T cd01781 96 LAIR 99 (100)
T ss_pred EEec
Confidence 5554
No 134
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=84.71 E-value=1 Score=36.76 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.5
Q ss_pred HHHHHhhcHHHHHHHHhch-hhhhhhHHHHHHHH
Q psy2827 169 QLDSRRRGLEIYLEKVCAV-RVIAESELMQEFLT 201 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~-~~i~~s~~~~~FL~ 201 (373)
.++.|+.+|+.||+.+.+. +.|.+|+.+.+|+.
T Consensus 74 ~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~ 107 (109)
T cd06883 74 VAERRKIELNSYLKSLFNASPEVAESDLVYTFFH 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcC
Confidence 3488999999999999887 69999999999985
No 135
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=84.20 E-value=1.5 Score=33.00 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=33.9
Q ss_pred EEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhc
Q psy2827 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAA 257 (373)
Q Consensus 218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~ 257 (373)
.++||||++=.+.+..|-++.+.+..++++-|+ ......
T Consensus 3 rV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl-~~~~~~ 41 (73)
T cd01817 3 RVILPDGSTTVVPTRPGESIRDLLSGLCEKRGI-NYAAVD 41 (73)
T ss_pred EEECCCCCeEEEEecCCCCHHHHHHHHHHHcCC-ChhHEE
Confidence 468999999999999999999999999999999 433333
No 136
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=83.65 E-value=1 Score=37.55 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHhhcHHHHHHHHhchhh-hhhhHHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRV-IAESELMQEFLTD 202 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~-i~~s~~~~~FL~~ 202 (373)
++.||.+|+.||+.+++.+. |.+|+.++.||..
T Consensus 84 ~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~ 117 (123)
T cd06882 84 AERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQ 117 (123)
T ss_pred HHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCC
Confidence 38899999999999999875 9999999999975
No 137
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=80.43 E-value=1.8 Score=35.90 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL 200 (373)
...-+++||.+|+.||+.+... .+..+..+.+++
T Consensus 70 ~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~ 103 (118)
T cd07277 70 DAKFVEERRKRLQVYLRRVVNT-LIQTSPELTACP 103 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcCC
Confidence 3344599999999999988763 444443343333
No 138
>KOG4261|consensus
Probab=79.43 E-value=0.63 Score=49.47 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=42.5
Q ss_pred EEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHh
Q psy2827 295 LCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQD 348 (373)
Q Consensus 295 ~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~ 348 (373)
+.+|+-||-.....+ .|||+-+||||.|+++|+.+|.-..+ +++.++..+|.
T Consensus 190 ~llRrk~f~sd~nvd--srdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qs 242 (1003)
T KOG4261|consen 190 LLLRRKFFFSDQNVD--SRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQS 242 (1003)
T ss_pred HHHHHHHhhcccccc--ccchHHhhhhhhhhhcccccCcCchhHHHHHHHhcccc
Confidence 667877775544444 34799999999999999999999887 89999988876
No 139
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=78.99 E-value=0.02 Score=51.28 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=35.5
Q ss_pred eEEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeee
Q psy2827 215 VDIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEI 264 (373)
Q Consensus 215 l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~ 264 (373)
+++.|++| ||+|+ .++..++++...........+++......+.+.+|+|
T Consensus 136 l~~~NllPi~~lDG~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (192)
T PF02163_consen 136 LALFNLLPIPPLDGGRILRALLEMIRRRRINERIVQIILLIGLVLLLLLFILILFND 192 (192)
T ss_dssp HHHHTTSSSSSSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HhhhhcccCCcCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhEEEEEEEhHHhcccCC
Confidence 78999999 99999 4477788999999999999999988888888888876
No 140
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=77.53 E-value=2.4 Score=36.22 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=31.6
Q ss_pred hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
...++.|+.||+.||+.+-..+.+.+|..+.+||.
T Consensus 104 ~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLe 138 (140)
T cd06895 104 EEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLE 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhc
Confidence 44569999999999999999999999999999985
No 141
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=76.43 E-value=2.7 Score=32.84 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=30.6
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
..++.|+.+|+.||+.+++.+.+.+++.+.+|+.
T Consensus 72 ~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 72 EFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 3458999999999999999999999999999974
No 142
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=75.52 E-value=12 Score=33.47 Aligned_cols=28 Identities=39% Similarity=0.265 Sum_probs=25.0
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEE
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAV 72 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~I 72 (373)
..+.|..|..||||+++|+..|++|.++
T Consensus 122 ~~~~Vd~v~fgS~A~~~g~d~d~~I~~v 149 (183)
T PF11874_consen 122 GKVIVDEVEFGSPAEKAGIDFDWEITEV 149 (183)
T ss_pred CEEEEEecCCCCHHHHcCCCCCcEEEEE
Confidence 3457999999999999999999999876
No 143
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=72.93 E-value=5.6 Score=30.20 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=30.9
Q ss_pred EEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 218 KILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
-++||||...++.+..+.++.++++.+|.+=+|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~l 35 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQL 35 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999999999999999888
No 144
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=68.62 E-value=4.8 Score=32.89 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHhhcHHHHHHH-HhchhhhhhhHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEK-VCAVRVIAESELMQEFLT 201 (373)
Q Consensus 170 ~~~rr~gl~~yl~~-v~~~~~i~~s~~~~~FL~ 201 (373)
++.|+.+|+.|+++ +...+.|++||.+..|+.
T Consensus 75 ae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 75 AERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 47899999999955 788999999999999974
No 145
>KOG0792|consensus
Probab=66.74 E-value=32 Score=38.54 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=87.3
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCCce
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATC 294 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~~~ 294 (373)
+.-..+|=|...+..++....+=-..++++++++.+ .--+||+|-.+....-.+|..|-|-|..- |.-+-+....
T Consensus 23 v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~---~e~~yFgl~~~~~k~~~~rWvdleK~lkk--ql~k~a~~p~ 97 (1144)
T KOG0792|consen 23 VVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLEL---REKEYFGLLWSPDKPDQIRWVDLEKPLKK--QLIKVANPPL 97 (1144)
T ss_pred EEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcc---cccccccccccCCccCccceeccchhHHH--hhhccCCCce
Confidence 556666679998888888888888899999999988 55566663222222234466777777541 2222222334
Q ss_pred EEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhc
Q psy2827 295 LCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDA 349 (373)
Q Consensus 295 ~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~ 349 (373)
+-+|.-+|.|. +.-|-+ ...--+.|.|-..||.-|++.|+ +++-.|+.+--|
T Consensus 98 l~frV~fyV~~-p~~Lqe--E~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQ 150 (1144)
T KOG0792|consen 98 LHFRVKFYVPD-PSGLQE--EATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQ 150 (1144)
T ss_pred EEEEEEEEecC-hhHHHH--HHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhh
Confidence 77888888776 444443 55556788899999999999998 788888776543
No 146
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=65.62 E-value=6.3 Score=32.17 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.6
Q ss_pred hHHHHHhhcHHHHHHHHhchh-hhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVR-VIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~-~i~~s~~~~~FL~ 201 (373)
..++.|+.+|+.|++.+...| .|.+|+.+.+|+.
T Consensus 76 ~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~ 110 (112)
T cd06890 76 SISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFA 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcC
Confidence 345899999999999999999 9999999999974
No 147
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=64.76 E-value=6.2 Score=32.70 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.2
Q ss_pred HHHhhcHHHHHHHH-hchhhhhhhHHHHHHHHH
Q psy2827 171 DSRRRGLEIYLEKV-CAVRVIAESELMQEFLTD 202 (373)
Q Consensus 171 ~~rr~gl~~yl~~v-~~~~~i~~s~~~~~FL~~ 202 (373)
+.|+.+|+.|++.+ ...+.|.+|+.+.+|+..
T Consensus 83 e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~ 115 (118)
T cd06887 83 ENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKV 115 (118)
T ss_pred HHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCc
Confidence 78999999999998 457799999999999864
No 148
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=61.22 E-value=14 Score=27.97 Aligned_cols=44 Identities=32% Similarity=0.486 Sum_probs=36.7
Q ss_pred EEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhhe
Q psy2827 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYL 261 (373)
Q Consensus 217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~l 261 (373)
+..+|||-++-.|++..|-++.+.+......=|+ .-+.-.+|.+
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l-~pe~C~V~~~ 45 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGL-QPECCAVFRL 45 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC-ChhHeEEEEc
Confidence 6789999999999999999999999999999999 4444444443
No 149
>KOG2528|consensus
Probab=57.82 E-value=9.4 Score=38.48 Aligned_cols=32 Identities=34% Similarity=0.759 Sum_probs=30.5
Q ss_pred HHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 171 DSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
+-||.||.-|+..+|..|+|++++.|+-||+-
T Consensus 260 ~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c 291 (490)
T KOG2528|consen 260 EKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTC 291 (490)
T ss_pred HHHHHHHHHHHHHhhcchHhhhhHHHHHHHcC
Confidence 67999999999999999999999999999986
No 150
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=55.58 E-value=10 Score=30.98 Aligned_cols=31 Identities=16% Similarity=0.492 Sum_probs=27.4
Q ss_pred HHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHH
Q psy2827 171 DSRRRGLEIYLEKVCA-VRVIAESELMQEFLT 201 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~ 201 (373)
+.|+.+|+.|++.+-. .+.|++|+.+.+|+.
T Consensus 78 e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~ 109 (111)
T cd06884 78 EKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFH 109 (111)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhcChHHHHhcC
Confidence 8899999999998777 589999999998863
No 151
>KOG2921|consensus
Probab=54.86 E-value=16 Score=36.50 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=33.9
Q ss_pred ceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827 46 LQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATHKQVVELIKS 91 (373)
Q Consensus 46 ~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~ 91 (373)
++.|..|...||+.- -||.+||.|.++||.+|.+ -+|..+.++.
T Consensus 221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t 265 (484)
T KOG2921|consen 221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT 265 (484)
T ss_pred eEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence 345777777777632 2799999999999999988 7777776664
No 152
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=54.56 E-value=9.5 Score=32.37 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=28.7
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.++.+|+.+||.||+.+-.++..-++-.+-+||.
T Consensus 100 ~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLe 133 (135)
T cd07296 100 EQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFID 133 (135)
T ss_pred cchHHHHHHHHHHHHHHhcChhhcCCHHHHhhee
Confidence 3456899999999999988888888888888874
No 153
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=54.52 E-value=14 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=24.2
Q ss_pred EEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 219 ILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 219 nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
++.+||.+..|.+-.+.++.++++.+|.+.|+
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l 32 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGL 32 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT-
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 35578999999999999999999999999999
No 154
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=53.79 E-value=11 Score=30.69 Aligned_cols=32 Identities=22% Similarity=0.427 Sum_probs=27.2
Q ss_pred HHHHhhcHHHHHHH-HhchhhhhhhHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEK-VCAVRVIAESELMQEFLT 201 (373)
Q Consensus 170 ~~~rr~gl~~yl~~-v~~~~~i~~s~~~~~FL~ 201 (373)
++.|+.+|+.|++. ++..+.|++||.+..|..
T Consensus 75 ae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 75 AAKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 47899999999987 456889999999998863
No 155
>KOG1421|consensus
Probab=53.08 E-value=34 Score=36.61 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=40.9
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS 91 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~ 91 (373)
.++++.....||||.+ +|..-.-|.+|||+.+.+ .+++...++.
T Consensus 862 ~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~--lddf~~~~~~ 905 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNT--LDDFYHMLLE 905 (955)
T ss_pred CceEEeecccCChhHh-hcchheeEEEecccccCc--HHHHHHHHhh
Confidence 4678999999999998 999999999999999999 9999999988
No 156
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=51.00 E-value=21 Score=29.96 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=14.8
Q ss_pred chhHHHHHhhcHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKV 184 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v 184 (373)
+..-++.||.+|+.||+.+
T Consensus 70 ~~~~ie~Rr~~Le~yL~~L 88 (127)
T cd06874 70 SERVAKERRRQLETYLRNF 88 (127)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3444599999999999944
No 157
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=48.51 E-value=12 Score=30.33 Aligned_cols=81 Identities=22% Similarity=0.187 Sum_probs=44.0
Q ss_pred EEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee---ccceeeccCcCCCCceeeeccccCCCCc
Q psy2827 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV---EYSFERKLEAKEFPHHLYIQNYSTASAT 293 (373)
Q Consensus 217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~---~~~~~r~l~~~e~p~~~~~~~~~~~~~~ 293 (373)
++..+.||..-.|.+.--.+..++++.++.++|+ ....-.|-..+.+- ..+-.+.|-|.|+--+-+ -...+-..
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~-~~~~~~~~~~v~d~~~~~~~~~~~LsD~EL~~IC~--s~~r~er~ 79 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGL-PEHPRNYCFYVLDGESPDPSNCRPLSDVELVTICH--SPDRPERN 79 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTS-S--CCCEEEEEE-S-----SSEEEE-SSHHHHHHH--TT--SSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCC-ccccccceEEEecccccccccceECcHHHHHHHHc--CCCCcccc
Confidence 4556678988899998889999999999999999 44222333333332 356788898888775522 11111123
Q ss_pred eEEEEee
Q psy2827 294 CLCIRKW 300 (373)
Q Consensus 294 ~~~lrk~ 300 (373)
.+.|||.
T Consensus 80 Rlilrk~ 86 (105)
T PF14847_consen 80 RLILRKV 86 (105)
T ss_dssp -EEE--E
T ss_pred ceEEEec
Confidence 4556665
No 158
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=47.28 E-value=27 Score=27.09 Aligned_cols=66 Identities=21% Similarity=0.102 Sum_probs=47.0
Q ss_pred cCChhhhhcccCChHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHhccchHHhhhhccCCCccc--ccccc
Q psy2827 302 FSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRAV--VSREM 371 (373)
Q Consensus 302 ~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~~~~~~L~~lq~~~~~~~~l~l~~~~~~~~--~~~~~ 371 (373)
+|...-..|..+||.||+=+-.+.|.++...- +++...+|.++|-+=++ -+..|.+|+-+. ++++|
T Consensus 4 p~FD~L~~LA~~dPe~fe~lr~~~~ee~I~~a--~~~~q~rL~~lQ~~Id~--~~~~~knP~~~~~~l~~~m 71 (83)
T PF11333_consen 4 PDFDELKELAQNDPEAFEQLRQELIEEMIESA--PEEMQPRLRALQFHIDM--QRSRCKNPLHRCVLLSRMM 71 (83)
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHH
Confidence 45555667888899999988777776665431 34889999999987654 367788998664 34444
No 159
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=46.77 E-value=35 Score=26.29 Aligned_cols=61 Identities=16% Similarity=0.342 Sum_probs=45.8
Q ss_pred ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCce
Q psy2827 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHH 281 (373)
Q Consensus 212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~ 281 (373)
+..+.|++.-++|..+.+++.+.+++..+.+.++.+.|+ ...... -+|. -++|.+.+.|.-
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi-~~~~~r--f~f~------G~~L~~~~T~~~ 69 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGL-SMNSVR--FLFD------GQRIRDNQTPDD 69 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCC-CccceE--EEEC------CeECCCCCCHHH
Confidence 445778888889999999999999999999999999999 332111 1222 466778888853
No 160
>KOG0792|consensus
Probab=46.58 E-value=10 Score=42.25 Aligned_cols=73 Identities=32% Similarity=0.532 Sum_probs=50.9
Q ss_pred EEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEec-------------CCCHHHHcC--CCCCCEEEEECCE
Q psy2827 12 VQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL-------------AGGAAEKAG--IRKGDRILAVNNV 75 (373)
Q Consensus 12 v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~-------------~gspA~~aG--L~~GD~Il~InG~ 75 (373)
..|.+++ +.|||.+.|+.+... ..+..|. .++.+. |+++|+... +..||.++.|||.
T Consensus 708 ~~~~~~~~g~~g~~~~g~~dq~~------~~~~~p~-a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr 780 (1144)
T KOG0792|consen 708 SYLAEDPPGRFGFNLKGGLDQLQ------NLLNEPV-AVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGR 780 (1144)
T ss_pred cccccCCCccccccccchhhhhh------ccccccH-HHHhhcccccchhcccccCCCCCccccccCCCcccceeeeccc
Confidence 3333443 349999998854321 1111232 345555 888887776 7889999999999
Q ss_pred EcCCCCHHHHHHHHHh
Q psy2827 76 NVEGATHKQVVELIKS 91 (373)
Q Consensus 76 ~v~~~s~~~~~~~i~~ 91 (373)
.+....++..+..|++
T Consensus 781 ~~~~~~~~~~vs~irs 796 (1144)
T KOG0792|consen 781 DVSESEHDQVVSLIRS 796 (1144)
T ss_pred ccccccccchHHHHhh
Confidence 9999889999998886
No 161
>KOG3751|consensus
Probab=43.80 E-value=18 Score=37.32 Aligned_cols=88 Identities=19% Similarity=0.156 Sum_probs=68.3
Q ss_pred CccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee-ccceeeccCcCCCCceeeeccccC
Q psy2827 211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV-EYSFERKLEAKEFPHHLYIQNYST 289 (373)
Q Consensus 211 ~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~-~~~~~r~l~~~e~p~~~~~~~~~~ 289 (373)
...++.+.++..||....+++..+-++.++.+.++.+--..... -.+|++.. +..++|-+.|+|.--- ..+.|..
T Consensus 185 ~vrklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~---~W~LvEh~P~L~iER~fEDHElVVE-vls~W~~ 260 (622)
T KOG3751|consen 185 KVRKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDE---DWCLVEHYPHLQIERVFEDHELVVE-VLSMWTQ 260 (622)
T ss_pred cccceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhccc---ceeeeeecchhhhhhhhhhHHHHHH-HHhhccc
Confidence 34569999999999999999999999999999999998773333 34455543 3568888999997632 2356677
Q ss_pred CCCceEEEEeecc
Q psy2827 290 ASATCLCIRKWLF 302 (373)
Q Consensus 290 ~~~~~~~lrk~~~ 302 (373)
+.++++.|||.++
T Consensus 261 dseNK~lF~k~~~ 273 (622)
T KOG3751|consen 261 DSENKLLFRKNPA 273 (622)
T ss_pred CCCceeEEeecch
Confidence 7788999999875
No 162
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=41.82 E-value=1.1 Score=39.50 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=16.9
Q ss_pred HHHHhcccCCCCCccceEEEEEcC----CCceE
Q psy2827 199 FLTDALDENGTNISSPVDIKILLP----DREVI 227 (373)
Q Consensus 199 FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i 227 (373)
++..+ +. . ++++|++| ||+++
T Consensus 122 ~~~~~-n~-~------l~~fNLlPi~plDGg~i 146 (180)
T cd05709 122 FLALI-NL-N------LAVFNLLPIPPLDGGRI 146 (180)
T ss_pred HHHHH-HH-H------HHHHHhCCCCCCChHHH
Confidence 55555 55 5 89999999 99998
No 163
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=41.58 E-value=0.93 Score=41.32 Aligned_cols=48 Identities=15% Similarity=0.047 Sum_probs=28.4
Q ss_pred eEEEEEcC----CCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhhee
Q psy2827 215 VDIKILLP----DREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLF 262 (373)
Q Consensus 215 l~l~nlLP----DGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf 262 (373)
++++|++| |||++.-.....+....+...+...+|+.....+..++++
T Consensus 128 l~lfNLlPi~pLDGg~il~~ll~~~~~~~~~~~~~~~~g~~i~~~l~~~g~~ 179 (208)
T cd06161 128 LGLFNLLPALPLDGGRVLRALLWRRTGYRRATRIAARIGQLFAILLVVLGLF 179 (208)
T ss_pred HHHHHccCCCCCChHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999 9999944444444434444455556666433444444433
No 164
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=40.79 E-value=1.7 Score=41.40 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=30.0
Q ss_pred HHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCC
Q psy2827 199 FLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 199 FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl 250 (373)
+++.+ +. . ++++|++| |||++ .++...+++.++. ...+.+|+
T Consensus 216 ~la~i-Nl-~------lavfNLlP~~pLDGg~il~~ll~~~~~~~~~~~--~~~~~i~~ 264 (277)
T cd06162 216 YLISL-SG-A------LAVINAVPCFALDGQWILSTFLEATLVSVIVQK--DKRDLIGF 264 (277)
T ss_pred HHHHH-HH-H------HHHhhcCCCCCCChHHHHHHHHHHHhCCccchh--hhhhhhHh
Confidence 55555 55 4 68999999 99999 5665666777765 55666676
No 165
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=40.59 E-value=45 Score=26.64 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=42.8
Q ss_pred EEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee--ccceeeccCcCCCCce
Q psy2827 228 TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV--EYSFERKLEAKEFPHH 281 (373)
Q Consensus 228 ~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~--~~~~~r~l~~~e~p~~ 281 (373)
++.+.+.+++.+++..+..++|+ --.-..-|.|..+. .....|.+.+.|+|..
T Consensus 20 sv~V~~~tt~~dvv~eaL~kfGl-~~~~~~~y~LvEV~ld~gv~ER~l~~~E~Pl~ 74 (97)
T cd01783 20 SIRVNKDTTVQDVILEVLPLFGL-QAECPESFRLIEVLLDRGVVERTVLPQEKPLQ 74 (97)
T ss_pred EEEecccchHHHHHHHHHHHhCc-ccCCccccEEEEEEecCCeeeeeCCCccChHH
Confidence 77788889999999999999999 55555667777664 2345899999999975
No 166
>KOG4371|consensus
Probab=39.91 E-value=30 Score=38.69 Aligned_cols=46 Identities=41% Similarity=0.701 Sum_probs=40.1
Q ss_pred cCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827 61 AGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 61 aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~~ 106 (373)
-.|+.||.++-+||..+....+.+++..++..|+.+.+-|.|..+.
T Consensus 1185 pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 1230 (1332)
T KOG4371|consen 1185 PDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPA 1230 (1332)
T ss_pred CCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcc
Confidence 3589999999999999998888888888888899999999986554
No 167
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=37.81 E-value=36 Score=28.59 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHHHHHHHhcCCccch
Q psy2827 312 ANDDRVATFMFWMAIDAVDRGQIRAE 337 (373)
Q Consensus 312 ~~d~~a~~~ly~Q~~~dv~~~~~~~~ 337 (373)
..|+...-+.|.||++.+.+-|..-+
T Consensus 14 ~~~~l~si~hYQqAls~se~~~~~~~ 39 (140)
T PF10952_consen 14 EADPLRSILHYQQALSLSEEIDESNE 39 (140)
T ss_pred cccHHHHHHHHHHHHHHHHHhccccc
Confidence 34888999999999999999975543
No 168
>PF09916 DUF2145: Uncharacterized protein conserved in bacteria (DUF2145); InterPro: IPR014547 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.79 E-value=32 Score=31.16 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHhc--------CCccch-hhHHHHHHHHhccchHHhhhhccCCCcccccc
Q psy2827 314 DDRVATFMFWMAIDAVDR--------GQIRAE-DRLYELKALQDASRKHEITTGSCNPNRAVVSR 369 (373)
Q Consensus 314 d~~a~~~ly~Q~~~dv~~--------~~~~~~-~~~~~L~~lq~~~~~~~~l~l~~~~~~~~~~~ 369 (373)
|..+.-.||.|...|.-. |++.|+ +...+|.++-..+...- .-|+|+|-+++-
T Consensus 50 c~~~~s~Ly~qgl~~Ff~d~~~~~~~~iiiP~pe~q~~L~~~l~~~~~~~---~Lh~~~YS~vAy 111 (201)
T PF09916_consen 50 CGTDRSALYRQGLGDFFADDAWRLDAGIIIPTPEVQQRLLALLASPARAL---RLHNPRYSMVAY 111 (201)
T ss_pred cCchhHHHHHhchHhhhccchhhcceEEEECCHHHHHHHHHHHhCcHHHH---HhcCCCcceeec
Confidence 666778888888777655 777786 88888887766654432 568999988863
No 169
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=37.24 E-value=1.2 Score=41.15 Aligned_cols=36 Identities=14% Similarity=-0.034 Sum_probs=20.7
Q ss_pred eEEEEEcC----CCceEEEEEEecCC-HHHHHHHhccccCC
Q psy2827 215 VDIKILLP----DREVITVSVRKSAT-ADEVYASAVPKLYL 250 (373)
Q Consensus 215 l~l~nlLP----DGg~i~ie~~~~~~-~~~~~~~~~~~igl 250 (373)
++++|||| |||++.-.....+. ...+-..+...+|.
T Consensus 145 l~~fNLlP~~PLDGgril~~ll~~~~g~~~~a~~~a~~~g~ 185 (227)
T cd06164 145 LAVFNLLPAFPLDGGRVLRALLWRRTGDYLKATRIAAWVGR 185 (227)
T ss_pred HHHHhCcCCCCCChHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 79999999 99999333332222 23333333444554
No 170
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=36.64 E-value=62 Score=25.75 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=46.1
Q ss_pred CCceE--EEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc-ceeeccCcCCCCc
Q psy2827 223 DREVI--TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY-SFERKLEAKEFPH 280 (373)
Q Consensus 223 DGg~i--~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~-~~~r~l~~~e~p~ 280 (373)
-++.+ .+++.+.+++.+++..++..+|| .....++|-.+.+. .=++.|.+.++|-
T Consensus 21 a~~~~~C~v~a~k~sTAa~VI~~~i~~L~L---d~tk~YvLaEVkEsGgEEwvL~p~D~pv 78 (105)
T cd01779 21 AESTISCRVTATKDSTAADVIDDVIASLQL---DGTKCYVLAEVKESGGEEWVLDPTDSPV 78 (105)
T ss_pred CCCceEeEeEeccCCcHHHHHHHHHHHhCc---CccccEEEEEeeccCCeeeecCcccCce
Confidence 55556 78888899999999999999999 88888899999875 4567788888883
No 171
>KOG4239|consensus
Probab=34.96 E-value=41 Score=32.49 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=49.2
Q ss_pred EEEcC-CCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec---cceeeccCcCCCCce
Q psy2827 218 KILLP-DREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE---YSFERKLEAKEFPHH 281 (373)
Q Consensus 218 ~nlLP-DGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~---~~~~r~l~~~e~p~~ 281 (373)
-.+|| | ....+.+.+..++.++++.+.+++-. ...--=||||...+ ....+||.+.++|.+
T Consensus 207 SfflPa~-svk~vrInStttt~eVI~~LLkKF~V--ed~P~kFALy~~~~~geqv~~~kLkd~d~PL~ 271 (348)
T KOG4239|consen 207 SFFLPAD-SVKNVRINSTTTTREVIKLLLKKFRV--EDNPQKFALYERHESGEQVKLTKLKDDDYPLI 271 (348)
T ss_pred eeecccc-cceeEEecccccHHHHHHHHHHHHee--cCCHhheeeeEEeecCchhhheecccccccHH
Confidence 45789 7 55588889999999999999999865 45667788888875 445699999999975
No 172
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=34.72 E-value=43 Score=26.89 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=26.1
Q ss_pred HHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHH
Q psy2827 171 DSRRRGLEIYLEKVCA-VRVIAESELMQEFLT 201 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~ 201 (373)
+.|.+.|+.|++.+.. .+.|++||.+.+|..
T Consensus 68 ~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 68 HKRVRDLNHYLEQLLSGSREVANSDCVLSFFL 99 (101)
T ss_pred HHHHHHHHHHHHHHHccCHHHhcchHHHHHhh
Confidence 4577899999998766 779999999998864
No 173
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=32.55 E-value=29 Score=29.58 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 172 SRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 172 ~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
-+++.+|.||+.+++.|++.+..-|..||.
T Consensus 110 k~~a~lE~fL~Ria~HP~l~~d~~f~~FLe 139 (141)
T cd07291 110 KTVQVHEVFLQRLSSHPSLSKDRNFHIFLE 139 (141)
T ss_pred HHHHHHHHHHHHHhhCCeeccCcchhhhcc
Confidence 456779999999999999999999988874
No 174
>KOG4371|consensus
Probab=32.39 E-value=45 Score=37.37 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=50.3
Q ss_pred EEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 11 EVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 11 ~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
.+.+.+.+ .++|+++...-- ..++++..+..++.|..-| ++.||++...+|+++...+..+....
T Consensus 1248 ~~~~~~~p~~~~~~~~~~~~~-------------s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~ 1314 (1332)
T KOG4371|consen 1248 SVMLLKKPMATLGLSLAKRTM-------------SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEK 1314 (1332)
T ss_pred hheeeecccccccccccccCc-------------CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHH
Confidence 44555555 567777654311 2345777777776666666 99999999999999988555444444
Q ss_pred HHhCCCeEEEEEEe
Q psy2827 89 IKSGGDVLSLTVIS 102 (373)
Q Consensus 89 i~~~g~~v~l~V~r 102 (373)
++---+++.+++.+
T Consensus 1315 ~~~v~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1315 LKLVQGPVQITVTR 1328 (1332)
T ss_pred hhhccCchhheehh
Confidence 33334555565543
No 175
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=32.04 E-value=30 Score=33.53 Aligned_cols=31 Identities=39% Similarity=0.462 Sum_probs=27.4
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcC
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVE 78 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~ 78 (373)
.+-.|.+.+||+++|+-.||.|+.+|+.++.
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCcHH
Confidence 3567889999999999999999999988764
No 176
>PRK15464 cold shock-like protein CspH; Provisional
Probab=28.86 E-value=81 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=12.5
Q ss_pred EEEEEcCCCCccEEEEe
Q psy2827 11 EVQIAKSDTGFGFNVRG 27 (373)
Q Consensus 11 ~v~l~r~~~g~Gfsi~g 27 (373)
+|.-....+||||....
T Consensus 8 ~Vk~fn~~KGfGFI~~~ 24 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPS 24 (70)
T ss_pred EEEEEECCCCeEEEccC
Confidence 46677778999996544
No 177
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=28.56 E-value=1.5e+02 Score=22.14 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=31.6
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
..-|.+=||||.++.-.+...+++.+++.-+......
T Consensus 6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~ 42 (82)
T PF00789_consen 6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFS 42 (82)
T ss_dssp EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHC
T ss_pred EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCC
Confidence 4778889999999999999999999998887666655
No 178
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=28.31 E-value=51 Score=28.20 Aligned_cols=34 Identities=18% Similarity=0.485 Sum_probs=28.4
Q ss_pred hHHHHHhhcH---------------HHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 168 QQLDSRRRGL---------------EIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 168 ~q~~~rr~gl---------------~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
.-++.++.+| +.||+.++..|++.++..++.||.
T Consensus 91 ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe 139 (141)
T cd06892 91 EEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLE 139 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhc
Confidence 3446677777 579999999999999999999984
No 179
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=28.24 E-value=1e+02 Score=23.42 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=29.4
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccC
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLY 249 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~ig 249 (373)
.-|.+=||||.++.-.+...+++.++++-+....+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~ 39 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARP 39 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCC
Confidence 45778899999999899999999999988876543
No 180
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=25.25 E-value=3.6 Score=39.00 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=20.4
Q ss_pred eEEEEEcC----CCceE---EEEEEecCCHHHHHHHh
Q psy2827 215 VDIKILLP----DREVI---TVSVRKSATADEVYASA 244 (373)
Q Consensus 215 l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~ 244 (373)
++++|++| |||++ .+...+++..+++-+..
T Consensus 204 l~lFNLlP~~PLDGg~il~~ll~~~~~~~~~~~~~~~ 240 (263)
T cd06159 204 LGLFNCLPAIPLDGGHVFRDLLEALLRRFPSEKAERV 240 (263)
T ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhCCCCCHHHHHH
Confidence 79999999 99999 44445555544444433
No 181
>KOG2273|consensus
Probab=23.52 E-value=61 Score=33.51 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=30.5
Q ss_pred HHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 171 DSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
+.||.+|+.||..++.+|++.++..|..||..-
T Consensus 195 e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~ 227 (503)
T KOG2273|consen 195 EKRRKALERFLNRLSLHPVLSNDEDFRLFLESD 227 (503)
T ss_pred HHHHHHHHHHHHHHhcCcccccCHHHHHHhccc
Confidence 789999999999999999999999999998754
No 182
>KOG3529|consensus
Probab=21.81 E-value=2e+02 Score=30.72 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=80.5
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhhe-eeeecc-ceeeccCcCCCCceeeeccccCCC
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYL-FEIVEY-SFERKLEAKEFPHHLYIQNYSTAS 291 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~l-f~~~~~-~~~r~l~~~e~p~~~~~~~~~~~~ 291 (373)
+....+-+.|-+.+ +-+-...+..+.+.-++..+||. =.-||+| |-|... .-..++ .--+ ..+.+.-..
T Consensus 13 ~~~~rv~~~d~e~~-~~i~~~~t~~~l~dlv~~~~glr---e~~yfgl~~~d~~~~~~wl~~--d~~v---~~~d~~k~~ 83 (596)
T KOG3529|consen 13 PINVRVTTMDAELE-FAIQPKTTGKQLFDLVVKTIGLR---ESWYFGLQYTDSKGEPTWLKL--DKKV---LDQDVPKDS 83 (596)
T ss_pred Ccceeeeehhhhhh-hhhCcchhHHHHHHHHhccCCCc---hhhhcccccccCCCCcchhhc--cchh---hhhhcCCCC
Confidence 34455555577776 66778899999999999999972 2334444 333221 001111 0001 112222222
Q ss_pred CceEEEEeeccCChhhh-hcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHh
Q psy2827 292 ATCLCIRKWLFSAPLER-SLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEI 355 (373)
Q Consensus 292 ~~~~~lrk~~~~~~~~~-~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~ 355 (373)
+..+.++--|| |.+-. +|+. .+...|.|.|+-+=|.++-|-|+ +..-.|++.+-+.+.-.|
T Consensus 84 ~~~~~f~akfy-~E~v~eeli~--~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy 146 (596)
T KOG3529|consen 84 PLNFHFHAKFY-PEDVAEELIQ--DITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDY 146 (596)
T ss_pred Ccceeeeeecc-hHHHHHHHHH--HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccc
Confidence 22344554444 54444 5555 88899999999999999999986 888888888877666554
No 183
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=21.25 E-value=53 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.7
Q ss_pred HHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 171 DSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
..++..+|.||+.+++.|++.+..-|..||.
T Consensus 109 kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe 139 (141)
T cd07292 109 KKTVAMHEVFLCRVAAHPILRKDLNFHVFLE 139 (141)
T ss_pred HHHHHHHHHHHHHHhcCCccccCcchhheec
Confidence 4677899999999999999999888887763
No 184
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=20.96 E-value=1.6e+02 Score=22.02 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=28.2
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhcccc
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKL 248 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~i 248 (373)
.-|.+=||||.++.-.+...+++.++++-+....
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~ 38 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL 38 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc
Confidence 5677889999999888889999999998884433
No 185
>KOG1769|consensus
Probab=20.30 E-value=1e+02 Score=24.66 Aligned_cols=56 Identities=16% Similarity=0.364 Sum_probs=39.2
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCC
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFP 279 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p 279 (373)
+-|.+-=-||..+.+.+.+..++...++++|.+-|+ ..-.+-+ +|+ -+++.+.+.|
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl-~~~s~RF--lFd------G~rI~~~~TP 76 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGL-SMNSLRF--LFD------GQRIRETHTP 76 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCC-ccceEEE--EEC------CcCcCCCCCh
Confidence 444444347888899999999999999999999999 3333222 343 3456666666
No 186
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=20.17 E-value=1.8e+02 Score=21.48 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=27.2
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccc
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPK 247 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~ 247 (373)
.-|.+=||||.++.-.+...+++.++++-+-..
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~ 35 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESN 35 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHc
Confidence 357778899999988888899999888877544
No 187
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.10 E-value=2.1e+02 Score=22.82 Aligned_cols=67 Identities=25% Similarity=0.319 Sum_probs=50.5
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY 287 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~ 287 (373)
-.|.++=.||.-.++.+--..++.+++..+..+..+.. .. -+-++ ....+..|-|.++|-|.. +|+.
T Consensus 3 y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~-~~--ny~l~-l~~~~l~RvL~p~ErPl~--Iqkr 69 (97)
T cd01775 3 YCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS-GG--NYQLS-LKKHDLSRVLRPTEKPLL--IQKR 69 (97)
T ss_pred eEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC-CC--CeEEE-EEECCeeeecCCcCCcHH--HHHH
Confidence 46777778999999999999999999999999987733 22 22222 235678899999999965 5643
Done!