Query psy2827
Match_columns 373
No_of_seqs 391 out of 1995
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:56:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe1_A Sorting nexin-27, G pro 99.7 1.8E-15 6.1E-20 122.2 13.9 100 6-105 4-103 (107)
2 1r6j_A Syntenin 1; PDZ, membra 99.6 6.4E-15 2.2E-19 113.5 12.2 78 6-102 2-80 (82)
3 2he4_A Na(+)/H(+) exchange reg 99.6 3.9E-14 1.3E-18 110.6 13.0 86 5-103 1-86 (90)
4 3l4f_D SH3 and multiple ankyri 99.5 6.9E-14 2.4E-18 117.5 13.4 104 2-105 21-125 (132)
5 2vsp_A PDZ domain-containing p 99.5 1.8E-14 6.3E-19 112.8 8.2 86 6-104 1-86 (91)
6 3r68_A Na(+)/H(+) exchange reg 99.5 7.8E-14 2.7E-18 109.9 11.9 86 5-103 2-87 (95)
7 2v90_A PDZ domain-containing p 99.5 1.2E-13 4.1E-18 109.1 12.9 88 7-104 2-89 (96)
8 3i4w_A Disks large homolog 4; 99.5 1.6E-13 5.3E-18 110.0 13.3 88 3-103 6-94 (104)
9 2f5y_A Regulator of G-protein 99.5 1.7E-13 5.7E-18 107.3 12.5 84 7-106 2-85 (91)
10 1g9o_A NHE-RF; PDZ domain, com 99.5 2.7E-13 9.2E-18 106.0 13.3 83 7-102 2-84 (91)
11 2iwo_A Multiple PDZ domain pro 99.5 1.5E-13 5E-18 113.6 11.6 94 3-105 19-114 (120)
12 2dkr_A LIN-7 homolog B; LIN-7B 99.5 2.8E-13 9.5E-18 106.2 12.0 87 5-103 2-89 (93)
13 1d5g_A Human phosphatase HPTP1 99.5 6.3E-13 2.1E-17 104.9 14.0 91 5-104 2-93 (96)
14 2ego_A General receptor for ph 99.5 4.2E-13 1.4E-17 106.1 12.8 92 6-102 2-94 (96)
15 2d92_A INAD-like protein; PDZ 99.5 3.5E-13 1.2E-17 109.1 12.5 93 4-104 11-105 (108)
16 2fne_A Multiple PDZ domain pro 99.5 2E-13 6.8E-18 112.2 11.3 91 5-104 22-113 (117)
17 1uhp_A Hypothetical protein KI 99.5 6E-13 2E-17 107.4 13.8 99 4-106 4-103 (107)
18 1m5z_A GRIP, AMPA receptor int 99.5 6.4E-13 2.2E-17 103.8 13.5 87 3-102 1-89 (91)
19 2jik_A Synaptojanin-2 binding 99.5 3.8E-13 1.3E-17 107.3 12.4 93 6-105 5-98 (101)
20 1qav_A Alpha-1 syntrophin (res 99.5 5.1E-13 1.8E-17 104.2 12.7 86 6-103 2-89 (90)
21 3b76_A E3 ubiquitin-protein li 99.5 3.5E-13 1.2E-17 111.0 11.6 91 6-105 22-114 (118)
22 2awx_A Synapse associated prot 99.5 7.9E-13 2.7E-17 106.3 13.4 92 7-105 2-94 (105)
23 2fe5_A Presynaptic protein SAP 99.5 9.7E-13 3.3E-17 103.3 13.4 89 8-103 3-92 (94)
24 2d90_A PDZ domain containing p 99.5 2.3E-13 7.8E-18 108.8 9.7 87 4-103 2-88 (102)
25 2q9v_A Membrane-associated gua 99.5 3.6E-13 1.2E-17 105.1 10.6 84 8-103 2-88 (90)
26 1q3o_A Shank1; PDZ, GKAP, pept 99.5 1.1E-12 3.8E-17 106.1 13.9 97 8-105 7-105 (109)
27 1um1_A KIAA1849 protein, RSGI 99.5 6.3E-13 2.2E-17 107.7 12.4 95 3-106 3-98 (110)
28 1ufx_A KIAA1526 protein; PDZ d 99.5 4.7E-13 1.6E-17 107.5 11.3 89 6-105 4-98 (103)
29 2jil_A GRIP1 protein, glutamat 99.5 8.9E-13 3E-17 104.2 12.7 90 8-105 3-93 (97)
30 2dls_A PDZ-rhogef, RHO guanine 99.4 6.1E-13 2.1E-17 104.6 11.4 86 3-105 3-88 (93)
31 4e34_A Golgi-associated PDZ an 99.4 1.1E-12 3.7E-17 101.6 12.5 83 8-102 2-86 (87)
32 2i1n_A Discs, large homolog 3; 99.4 1.3E-12 4.6E-17 104.2 13.4 91 8-105 4-95 (102)
33 2vsv_A Rhophilin-2; scaffold p 99.4 5.6E-13 1.9E-17 108.2 11.3 83 7-105 22-105 (109)
34 2eei_A PDZ domain-containing p 99.4 2.5E-13 8.7E-18 109.2 9.2 89 3-104 3-91 (106)
35 2opg_A Multiple PDZ domain pro 99.4 1.6E-12 5.5E-17 102.9 13.5 88 7-105 3-91 (98)
36 1wi4_A Synip, syntaxin binding 99.4 9.7E-13 3.3E-17 106.7 12.1 89 5-104 12-105 (109)
37 2dc2_A GOPC, golgi associated 99.4 9.9E-13 3.4E-17 105.5 12.0 90 4-105 5-96 (103)
38 2i04_A Membrane-associated gua 99.4 1.5E-12 5.1E-17 100.4 12.4 81 10-102 2-85 (85)
39 2jxo_A Ezrin-radixin-moesin-bi 99.4 9.2E-13 3.1E-17 104.4 11.5 86 5-103 6-92 (98)
40 2uzc_A Human pdlim5, PDZ and L 99.4 1.5E-12 5.1E-17 101.0 12.4 83 8-103 3-85 (88)
41 2r4h_A Membrane-associated gua 99.4 1.7E-12 6E-17 105.6 13.0 87 5-103 21-108 (112)
42 3o46_A Maguk P55 subfamily mem 99.4 1.9E-12 6.4E-17 101.7 12.5 83 8-103 4-87 (93)
43 2djt_A Unnamed protein product 99.4 1.6E-12 5.4E-17 104.2 12.3 92 3-104 6-98 (104)
44 2kv8_A RGS12, regulator of G-p 99.4 1.6E-13 5.5E-18 105.5 6.1 81 7-103 1-81 (83)
45 2byg_A Channel associated prot 99.4 1.7E-12 5.8E-17 106.6 12.6 91 7-104 23-114 (117)
46 1ihj_A INAD; intermolecular di 99.4 2.1E-12 7.3E-17 102.2 12.7 90 8-103 5-96 (98)
47 1wi2_A Riken cDNA 2700099C19; 99.4 2E-12 6.7E-17 103.8 12.6 85 6-103 13-98 (104)
48 2eeg_A PDZ and LIM domain prot 99.4 1.4E-12 4.9E-17 102.6 11.2 87 4-103 4-90 (94)
49 1wha_A KIAA0147 protein, scrib 99.4 9.6E-13 3.3E-17 105.8 10.4 96 3-104 2-98 (105)
50 3ngh_A PDZ domain-containing p 99.4 1.6E-12 5.5E-17 104.5 11.6 84 8-104 1-85 (106)
51 2daz_A INAD-like protein; PDZ 99.4 2.1E-12 7.3E-17 107.0 12.5 93 2-105 19-112 (124)
52 1ujd_A KIAA0559 protein; PDZ d 99.4 2E-12 6.7E-17 106.1 11.8 94 4-104 8-109 (117)
53 1wf8_A Neurabin-I; PDZ domain, 99.4 1.9E-12 6.4E-17 104.4 11.3 90 7-105 8-101 (107)
54 2vwr_A Ligand of NUMB protein 99.4 5.2E-12 1.8E-16 99.4 13.6 83 9-104 4-89 (95)
55 1uep_A Membrane associated gua 99.4 6.8E-13 2.3E-17 106.3 8.6 88 5-104 6-96 (103)
56 1ueq_A Membrane associated gua 99.4 7.8E-12 2.7E-16 103.4 15.2 88 6-105 17-107 (123)
57 2qg1_A Multiple PDZ domain pro 99.4 3.7E-12 1.3E-16 99.6 12.6 84 7-103 3-88 (92)
58 3axa_A Afadin, nectin-3, prote 99.4 3.9E-12 1.3E-16 102.3 13.0 90 6-105 9-99 (106)
59 1n7e_A AMPA receptor interacti 99.4 5.1E-12 1.7E-16 99.9 13.4 86 7-104 4-90 (97)
60 1kwa_A Hcask/LIN-2 protein; PD 99.4 2.7E-12 9.1E-17 100.0 11.5 82 8-103 1-84 (88)
61 2eno_A Synaptojanin-2-binding 99.4 2.7E-12 9.1E-17 105.7 12.1 93 6-105 15-108 (120)
62 3khf_A Microtubule-associated 99.4 1.9E-12 6.7E-17 102.7 10.8 90 10-104 4-93 (99)
63 1tp5_A Presynaptic density pro 99.4 4.6E-12 1.6E-16 104.0 13.4 88 4-104 10-98 (119)
64 1i16_A Interleukin 16, LCF; cy 99.4 1.1E-12 3.8E-17 109.7 9.8 92 5-105 26-119 (130)
65 1q7x_A PDZ2B domain of PTP-BAS 99.4 2.2E-12 7.5E-17 104.1 11.2 92 4-104 5-102 (108)
66 1rgw_A ZAsp protein; PDZ, cyph 99.4 1.8E-12 6.2E-17 99.8 10.1 82 9-103 2-83 (85)
67 1wf7_A Enigma homologue protei 99.4 2.8E-12 9.7E-17 102.6 11.4 88 5-105 2-89 (103)
68 2q3g_A PDZ and LIM domain prot 99.4 4.3E-12 1.5E-16 98.7 12.1 83 9-104 4-86 (89)
69 2pa1_A PDZ and LIM domain prot 99.4 4.3E-12 1.5E-16 98.2 12.0 81 11-103 3-84 (87)
70 3hpk_A Protein interacting wit 99.4 5.5E-12 1.9E-16 104.6 13.1 86 7-104 18-105 (125)
71 2kpk_A Membrane-associated gua 99.4 4.4E-12 1.5E-16 105.9 12.4 88 6-105 16-106 (129)
72 3cbz_A Dishevelled-2; PDZ doma 99.4 2.5E-12 8.4E-17 104.1 10.5 89 6-104 3-96 (108)
73 2db5_A INAD-like protein; PDZ 99.4 4.1E-12 1.4E-16 105.8 11.9 91 6-105 23-116 (128)
74 2ehr_A INAD-like protein; PDZ 99.4 2.1E-12 7.2E-17 105.8 9.9 99 4-105 11-111 (117)
75 2yuy_A RHO GTPase activating p 99.4 3.7E-13 1.3E-17 112.0 5.3 101 3-103 3-119 (126)
76 3bpu_A Membrane-associated gua 99.4 3.7E-12 1.3E-16 98.8 10.6 82 7-103 2-85 (88)
77 2g5m_B Neurabin-2; spinophilin 99.4 2.4E-12 8.3E-17 104.7 9.9 91 8-107 4-98 (113)
78 3gge_A PDZ domain-containing p 99.4 8.8E-12 3E-16 98.1 12.6 84 6-103 3-89 (95)
79 2pkt_A PDZ and LIM domain prot 99.4 9.7E-12 3.3E-16 97.1 12.8 83 9-104 4-86 (91)
80 2o2t_A Multiple PDZ domain pro 99.4 3.9E-12 1.3E-16 104.2 10.9 91 6-105 18-111 (117)
81 2koj_A Partitioning defective 99.4 1.2E-11 4.1E-16 100.2 13.7 94 2-104 5-101 (111)
82 2dlu_A INAD-like protein; PDZ 99.4 5.6E-12 1.9E-16 102.2 11.8 84 8-105 15-99 (111)
83 1uew_A Membrane associated gua 99.4 5.4E-12 1.8E-16 102.9 11.6 97 3-104 5-103 (114)
84 2gzv_A PRKCA-binding protein; 99.4 1E-11 3.6E-16 101.4 13.4 86 5-102 21-108 (114)
85 1nf3_C PAR-6B; semi-CRIB motif 99.4 6.5E-12 2.2E-16 104.7 12.4 98 4-104 25-125 (128)
86 2qkv_A Inactivation-NO-after-p 99.4 9.6E-12 3.3E-16 98.3 12.6 90 2-106 2-93 (96)
87 2kjd_A Sodium/hydrogen exchang 99.3 7.8E-12 2.7E-16 103.9 12.4 89 4-105 5-94 (128)
88 2yt7_A Amyloid beta A4 precurs 99.3 8.6E-12 3E-16 99.5 12.1 91 5-105 6-100 (101)
89 1uju_A Scribble; PDZ domain, c 99.3 9.5E-13 3.3E-17 106.9 6.6 98 3-103 4-103 (111)
90 1va8_A Maguk P55 subfamily mem 99.3 1.1E-11 3.7E-16 101.0 12.7 82 8-104 25-108 (113)
91 3sfj_A TAX1-binding protein 3; 99.3 1.1E-11 3.7E-16 99.2 12.3 93 10-102 6-103 (104)
92 1mfg_A ERB-B2 interacting prot 99.3 1.4E-11 4.6E-16 97.0 12.5 89 9-103 4-92 (95)
93 1x5q_A LAP4 protein; PDZ domai 99.3 2.4E-11 8.2E-16 98.3 14.3 95 4-104 11-105 (110)
94 2ejy_A 55 kDa erythrocyte memb 99.3 7.3E-12 2.5E-16 99.5 10.8 83 6-102 10-94 (97)
95 4amh_A Disks large homolog 1; 99.3 1.2E-11 4.2E-16 99.6 12.3 84 14-104 8-92 (106)
96 1wfv_A Membrane associated gua 99.3 2.4E-12 8.1E-17 102.8 8.0 91 2-104 5-96 (103)
97 3soe_A Membrane-associated gua 99.3 1.1E-11 3.7E-16 101.0 11.8 83 6-105 10-94 (113)
98 2vz5_A TAX1-binding protein 3; 99.3 1.2E-11 4.1E-16 104.7 12.5 100 6-105 21-125 (139)
99 1v62_A KIAA1719 protein; struc 99.3 2E-11 6.7E-16 100.2 13.4 89 6-105 13-103 (117)
100 2fcf_A Multiple PDZ domain pro 99.3 1.9E-11 6.4E-16 97.6 12.9 95 7-104 3-99 (103)
101 2jre_A C60-1 PDZ domain peptid 99.3 1.2E-11 4.2E-16 99.6 11.8 96 2-104 6-104 (108)
102 2w4f_A Protein LAP4; structura 99.3 2.2E-11 7.6E-16 96.0 12.9 91 8-104 3-93 (97)
103 2e7k_A Maguk P55 subfamily mem 99.3 5.7E-12 2E-16 98.7 9.4 83 5-103 3-87 (91)
104 1n7t_A 99-MER peptide of densi 99.3 1.2E-11 4.1E-16 98.9 11.2 94 4-103 7-100 (103)
105 3kzd_A TIAM-1, T-lymphoma inva 99.3 2.1E-11 7.3E-16 96.0 12.3 82 8-102 6-90 (94)
106 1um7_A Synapse-associated prot 99.3 4.9E-12 1.7E-16 102.7 8.8 88 3-103 10-98 (113)
107 1vae_A Rhophilin 2, rhophilin, 99.3 3.4E-12 1.2E-16 103.9 7.6 84 7-106 14-98 (111)
108 3egg_C Spinophilin; PP1, serin 99.3 1.5E-11 5E-16 107.7 12.2 88 8-102 80-169 (170)
109 3k1r_A Harmonin; protein-prote 99.3 1.5E-11 5E-16 109.7 12.4 90 3-105 79-169 (192)
110 2csj_A TJP2 protein; PDZ domai 99.3 8.5E-12 2.9E-16 102.2 9.9 92 6-104 12-104 (117)
111 2kom_A Partitioning defective 99.3 3.5E-11 1.2E-15 99.3 13.6 93 2-103 24-119 (121)
112 2eeh_A PDZ domain-containing p 99.3 2.1E-11 7.4E-16 96.9 11.8 88 4-104 6-94 (100)
113 2dm8_A INAD-like protein; PDZ 99.3 1.6E-11 5.6E-16 100.2 11.1 89 6-105 15-104 (116)
114 3nfk_A Tyrosine-protein phosph 99.3 1.8E-11 6.1E-16 98.5 11.1 83 8-102 17-106 (107)
115 2iwq_A Multiple PDZ domain pro 99.3 3.4E-11 1.2E-15 99.7 12.8 96 7-105 23-120 (123)
116 1wg6_A Hypothetical protein (r 99.3 1.1E-11 3.8E-16 103.2 9.9 95 3-105 18-123 (127)
117 2edz_A PDZ domain-containing p 99.3 1.8E-11 6.1E-16 99.8 10.6 85 8-105 13-98 (114)
118 1whd_A RGS3, regulator of G-pr 99.3 1.1E-11 3.8E-16 98.7 9.0 84 5-104 12-95 (100)
119 2h2b_A Tight junction protein 99.3 2.9E-11 9.9E-16 97.3 11.6 93 5-104 4-97 (107)
120 1v6b_A Harmonin isoform A1; st 99.3 2.6E-11 9E-16 99.6 11.3 86 9-106 19-109 (118)
121 2iwn_A Multiple PDZ domain pro 99.3 4E-11 1.4E-15 94.3 11.9 88 8-103 4-92 (97)
122 1ujv_A Membrane associated gua 99.3 5.5E-11 1.9E-15 94.0 12.6 85 3-104 5-91 (96)
123 2edv_A FERM and PDZ domain-con 99.3 3.6E-12 1.2E-16 100.8 5.6 84 4-104 4-89 (96)
124 2z17_A Pleckstrin homology SEC 99.3 2.5E-11 8.6E-16 97.2 10.6 91 5-100 12-103 (104)
125 1wfg_A Regulating synaptic mem 99.3 5.7E-11 2E-15 99.4 13.0 79 18-105 47-128 (131)
126 2cs5_A Tyrosine-protein phosph 99.3 1.9E-11 6.6E-16 100.3 9.7 85 7-103 14-105 (119)
127 3qik_A Phosphatidylinositol 3, 99.3 4.2E-11 1.4E-15 95.1 11.2 78 9-101 18-98 (101)
128 3gsl_A Disks large homolog 4; 99.3 5.5E-11 1.9E-15 105.2 13.2 93 6-105 3-96 (196)
129 1x6d_A Interleukin-16; PDZ dom 99.3 4.7E-11 1.6E-15 98.0 11.6 90 5-105 12-104 (119)
130 1y7n_A Amyloid beta A4 precurs 99.3 5.3E-11 1.8E-15 93.1 11.3 76 8-102 11-88 (90)
131 1v5q_A GRIP1 homolog, glutamat 99.2 4.9E-11 1.7E-15 98.5 11.7 91 7-105 14-108 (122)
132 1z87_A Alpha-1-syntrophin; pro 99.2 1.7E-11 5.8E-16 114.4 9.3 88 5-104 74-163 (263)
133 2dmz_A INAD-like protein; PDZ 99.2 4.7E-11 1.6E-15 99.4 11.1 94 5-105 12-107 (129)
134 2la8_A Inactivation-NO-after-p 99.2 4.4E-11 1.5E-15 96.4 10.4 82 10-106 4-87 (106)
135 3e17_A Tight junction protein 99.2 9.7E-11 3.3E-15 91.0 11.5 75 11-103 3-80 (88)
136 1vb7_A PDZ and LIM domain 2; P 99.2 3.8E-11 1.3E-15 94.4 9.1 83 10-104 6-89 (94)
137 1wif_A RSGI RUH-020, riken cDN 99.2 2E-11 6.7E-16 101.6 7.7 81 8-103 27-110 (126)
138 2edp_A Fragment, shroom family 99.2 5E-11 1.7E-15 94.8 9.2 87 5-104 6-94 (100)
139 1qau_A Neuronal nitric oxide s 99.2 2.3E-10 7.7E-15 92.7 12.9 83 10-105 3-88 (112)
140 1uit_A Human discs large 5 pro 99.2 1.6E-10 5.6E-15 94.4 12.1 85 7-105 18-102 (117)
141 2d8i_A T-cell lymphoma invasio 99.2 4.5E-11 1.5E-15 97.7 8.4 88 5-105 12-102 (114)
142 3r0h_A INAD, inactivation-NO-a 99.2 2.2E-10 7.6E-15 102.5 13.6 91 5-105 15-109 (206)
143 1uez_A KIAA1526 protein; PDZ d 99.2 5.8E-11 2E-15 94.5 8.1 89 3-104 3-93 (101)
144 3tsv_A Tight junction protein 99.2 3.1E-10 1.1E-14 94.0 12.3 82 8-104 29-112 (124)
145 1b8q_A Protein (neuronal nitri 99.2 1.1E-10 3.9E-15 96.8 9.4 89 5-106 5-96 (127)
146 2eaq_A LIM domain only protein 99.1 3.7E-10 1.3E-14 87.7 11.6 79 10-103 5-88 (90)
147 2qt5_A Glutamate receptor-inte 99.1 3.5E-10 1.2E-14 101.0 12.9 90 4-105 3-94 (200)
148 1x5n_A Harmonin; PDZ domain, u 99.1 3.3E-10 1.1E-14 92.1 11.4 86 5-103 12-98 (114)
149 3cyy_A Tight junction protein 99.1 7E-10 2.4E-14 86.4 12.8 79 8-104 2-83 (92)
150 2lob_A Golgi-associated PDZ an 98.7 4.3E-12 1.5E-16 103.5 0.0 85 5-101 24-110 (112)
151 3gsl_A Disks large homolog 4; 99.1 5.1E-10 1.8E-14 98.9 12.8 91 8-105 100-191 (196)
152 1v5l_A PDZ and LIM domain 3; a 99.1 6.3E-11 2.1E-15 94.8 6.1 85 8-105 5-89 (103)
153 2krg_A Na(+)/H(+) exchange reg 99.1 9.7E-11 3.3E-15 106.3 7.6 85 5-102 6-91 (216)
154 1p1d_A PDZ45, glutamate recept 99.1 5.2E-10 1.8E-14 99.6 11.7 91 7-105 5-99 (196)
155 1uf1_A KIAA1526 protein; PDZ d 99.1 2.2E-09 7.6E-14 89.1 13.2 86 8-106 20-106 (128)
156 1w9e_A Syntenin 1; cell adhesi 99.0 2E-09 6.8E-14 93.3 13.0 81 7-102 3-85 (166)
157 4eku_A Protein-tyrosine kinase 99.0 6.4E-10 2.2E-14 109.6 9.9 126 222-349 35-167 (392)
158 3shw_A Tight junction protein 99.0 1.4E-09 4.7E-14 109.2 12.3 81 9-104 2-84 (468)
159 1wh1_A KIAA1095 protein; PDZ d 99.0 9.6E-10 3.3E-14 90.9 9.0 87 8-106 19-109 (124)
160 2yub_A LIMK-2, LIM domain kina 99.0 2.1E-09 7.3E-14 88.2 10.8 93 4-105 8-106 (118)
161 3r0h_A INAD, inactivation-NO-a 99.0 2.5E-09 8.5E-14 95.6 12.1 62 45-106 136-198 (206)
162 2rcz_A Tight junction protein 99.0 5.1E-09 1.7E-13 79.2 12.1 56 47-102 23-79 (81)
163 1ef1_A Moesin; membrane, FERM 99.0 1.7E-09 5.7E-14 102.4 11.5 128 214-350 1-129 (294)
164 2qbw_A PDZ-fibronectin fusion 99.0 2.1E-09 7.2E-14 95.3 11.4 79 19-102 2-80 (195)
165 4dxa_B KREV interaction trappe 99.0 9.2E-10 3.1E-14 105.8 8.9 129 215-351 6-148 (322)
166 3tsz_A Tight junction protein 99.0 3.1E-09 1.1E-13 104.7 12.4 84 7-105 8-93 (391)
167 2xkx_A Disks large homolog 4; 99.0 2.7E-09 9.4E-14 113.1 12.3 94 5-105 56-150 (721)
168 3ivf_A Talin-1; FERM domain, c 98.9 4.7E-09 1.6E-13 102.7 12.6 137 211-356 82-222 (371)
169 2qt5_A Glutamate receptor-inte 98.9 9.7E-09 3.3E-13 91.5 13.0 88 9-104 107-195 (200)
170 1h4r_A Merlin; FERM, neurofibr 98.9 6.4E-09 2.2E-13 99.4 12.5 134 212-355 20-154 (314)
171 3au4_A Myosin-X; protein-prote 98.9 2.5E-09 8.6E-14 110.1 10.0 130 213-349 215-353 (555)
172 3i18_A LMO2051 protein; alpha- 98.9 7.3E-09 2.5E-13 82.3 9.0 83 45-130 7-92 (100)
173 3qij_A Protein 4.1; cytoskelet 98.8 1.3E-08 4.4E-13 96.7 10.2 130 211-351 14-144 (296)
174 2i1j_A Moesin; FERM, coiled-co 98.8 2.2E-08 7.6E-13 103.2 12.5 129 213-350 3-132 (575)
175 2xkx_A Disks large homolog 4; 98.8 2.9E-08 1E-12 105.2 12.3 83 8-103 307-390 (721)
176 2al6_A Focal adhesion kinase 1 98.8 8.5E-09 2.9E-13 101.1 7.5 131 215-349 8-147 (375)
177 3id1_A Regulator of sigma E pr 98.7 3.1E-08 1.1E-12 77.9 8.7 55 48-104 5-61 (95)
178 3suz_A Amyloid beta A4 precurs 98.7 8.3E-09 2.9E-13 101.6 6.3 90 6-105 202-295 (388)
179 2kjp_A Uncharacterized protein 98.7 3.8E-09 1.3E-13 82.6 2.6 77 48-127 4-84 (91)
180 2kl1_A YLBL protein; structure 98.7 1.9E-08 6.4E-13 79.0 6.1 58 46-106 6-65 (94)
181 2zpm_A Regulator of sigma E pr 98.7 4.4E-08 1.5E-12 76.0 7.2 56 48-105 7-63 (91)
182 1p1d_A PDZ45, glutamate recept 98.7 1.4E-07 4.9E-12 83.7 11.4 58 46-103 136-194 (196)
183 2pzd_A Serine protease HTRA2; 98.7 8.8E-08 3E-12 77.4 9.1 59 44-105 34-92 (113)
184 2i6v_A General secretion pathw 98.6 6.2E-08 2.1E-12 74.8 7.5 56 47-104 21-78 (87)
185 2l97_A HTRA, putative serine p 98.6 8.5E-08 2.9E-12 80.3 8.5 82 21-105 31-116 (134)
186 3pvl_A Myosin VIIA isoform 1; 98.6 1E-07 3.5E-12 99.7 10.6 130 214-350 263-404 (655)
187 2p3w_A Probable serine proteas 98.6 2E-07 6.7E-12 75.3 8.8 58 45-105 35-92 (112)
188 2hga_A Conserved protein MTH13 98.5 3.1E-07 1.1E-11 76.0 9.1 79 45-128 25-105 (125)
189 2i4s_A General secretion pathw 98.5 3E-07 1E-11 73.5 7.2 55 48-104 40-96 (105)
190 1w9e_A Syntenin 1; cell adhesi 98.4 2.5E-06 8.6E-11 73.5 11.7 63 37-101 101-163 (166)
191 3rle_A Golgi reassembly-stacki 98.4 5.6E-07 1.9E-11 80.9 7.2 82 45-129 112-197 (209)
192 3stj_A Protease DEGQ; serine p 98.3 1.1E-06 3.7E-11 85.1 8.6 59 45-105 263-323 (345)
193 4a8c_A Periplasmic PH-dependen 98.3 4.6E-06 1.6E-10 83.2 12.3 58 46-105 364-421 (436)
194 3suz_A Amyloid beta A4 precurs 98.3 1.3E-07 4.5E-12 93.0 0.3 89 8-102 284-372 (388)
195 1te0_A Protease DEGS; two doma 98.2 1.5E-06 5.2E-11 83.0 7.6 59 45-105 244-304 (318)
196 1y8t_A Hypothetical protein RV 98.2 2.7E-06 9.1E-11 81.4 9.2 58 45-104 242-302 (324)
197 2j0j_A Focal adhesion kinase 1 98.2 1.8E-06 6.1E-11 90.4 8.7 131 216-350 9-148 (656)
198 3pv2_A DEGQ; trypsin fold, PDZ 98.2 3.4E-06 1.2E-10 84.5 10.0 60 45-106 282-343 (451)
199 1fc6_A Photosystem II D1 prote 98.2 4.4E-06 1.5E-10 82.0 10.6 60 46-105 100-160 (388)
200 3rle_A Golgi reassembly-stacki 98.2 1.5E-06 5.1E-11 78.1 6.3 57 46-104 17-76 (209)
201 4fgm_A Aminopeptidase N family 98.2 4.2E-06 1.4E-10 86.6 10.1 58 46-106 497-556 (597)
202 1lcy_A HTRA2 serine protease; 98.2 3.6E-06 1.2E-10 80.7 8.5 58 45-105 256-313 (325)
203 3qo6_A Protease DO-like 1, chl 98.1 3E-06 1E-10 82.0 6.2 59 45-105 251-322 (348)
204 4a8c_A Periplasmic PH-dependen 98.1 8.2E-06 2.8E-10 81.4 9.2 60 45-106 263-324 (436)
205 3k50_A Putative S41 protease; 98.0 3.5E-06 1.2E-10 83.1 5.3 56 47-105 92-147 (403)
206 3pv2_A DEGQ; trypsin fold, PDZ 98.0 9E-06 3.1E-10 81.4 7.7 57 46-104 387-443 (451)
207 3num_A Serine protease HTRA1; 97.9 1.7E-06 5.7E-11 83.2 0.0 58 45-105 254-311 (332)
208 1ky9_A Protease DO, DEGP, HTRA 97.6 1.4E-05 4.7E-10 80.0 1.2 59 45-105 286-346 (448)
209 3lui_A Sorting nexin-17, SNX17 97.4 0.00016 5.5E-09 58.5 4.8 59 145-203 20-108 (115)
210 1ky9_A Protease DO, DEGP, HTRA 97.4 2.7E-05 9.2E-10 77.9 0.0 57 46-104 384-440 (448)
211 1k32_A Tricorn protease; prote 97.2 0.00053 1.8E-08 75.0 7.4 56 46-104 749-815 (1045)
212 4fln_A Protease DO-like 2, chl 97.1 0.00049 1.7E-08 70.1 5.8 61 45-106 277-347 (539)
213 2wwe_A Phosphoinositide-3-kina 96.9 0.00072 2.5E-08 55.2 4.1 35 166-201 90-125 (127)
214 1wgr_A Growth factor receptor- 96.8 0.0044 1.5E-07 48.6 7.5 89 210-302 5-94 (100)
215 1mix_A Talin; focal adhesion, 96.7 0.0013 4.4E-08 58.2 4.6 47 304-351 5-52 (206)
216 4fln_A Protease DO-like 2, chl 96.2 0.0076 2.6E-07 61.3 7.2 53 46-100 416-469 (539)
217 4f7g_A Talin-1; alpha-helix bu 96.0 0.0037 1.3E-07 56.2 3.6 43 314-356 25-68 (222)
218 3iq2_A Sorting nexin-7; SNX7, 94.2 0.038 1.3E-06 45.9 4.0 38 166-203 87-124 (138)
219 4az9_A Sorting nexin-24; prote 92.9 0.067 2.3E-06 43.9 3.4 37 165-202 88-124 (129)
220 3p0c_A Nischarin; structural g 92.6 0.058 2E-06 44.3 2.6 35 169-203 90-124 (130)
221 2csk_A Sorting nexin 12; SNX12 92.2 0.083 2.8E-06 44.1 3.1 38 166-203 93-130 (146)
222 2i4k_A Sorting nexin-1, SNX1; 92.0 0.054 1.9E-06 43.9 1.8 36 166-201 90-125 (128)
223 1ocs_A Sorting nexin GRD19; so 91.8 0.13 4.3E-06 43.9 3.9 38 166-203 120-158 (162)
224 4gmv_A RAS-associated and plec 91.6 0.39 1.3E-05 44.6 7.3 85 212-300 29-114 (281)
225 1xte_A Serine/threonine-protei 91.2 0.13 4.5E-06 43.3 3.3 38 166-203 77-114 (154)
226 1kmd_A VAM7P, vacuolar morphog 90.7 0.17 5.7E-06 40.5 3.4 38 166-203 74-114 (117)
227 1wxa_A Afadin, AF-6 protein; R 90.2 0.22 7.4E-06 40.0 3.6 72 227-300 26-108 (116)
228 3ddc_B RAS association domain- 89.4 0.39 1.3E-05 40.6 4.6 62 218-281 80-144 (163)
229 1h6h_A Neutrophil cytosol fact 87.8 0.37 1.3E-05 39.8 3.5 36 168-203 99-135 (143)
230 2ett_A Sorting nexin-22; PX do 85.7 0.42 1.4E-05 39.0 2.6 35 168-203 82-116 (128)
231 2ar5_A Phosphoinositide 3-kina 84.8 0.54 1.8E-05 37.8 2.9 33 170-202 81-114 (121)
232 3dyt_A Sorting nexin-9; 3-heli 83.9 0.67 2.3E-05 44.6 3.6 33 170-202 95-127 (366)
233 2iwl_X Phosphatidylinositol-4- 83.3 0.65 2.2E-05 38.3 2.8 33 171-203 97-130 (140)
234 3hpc_X SNX5 protein; sprting n 81.1 0.95 3.2E-05 38.4 3.1 30 174-203 121-150 (161)
235 4akv_A Sorting nexin-33; trans 80.7 0.86 2.9E-05 44.2 3.0 33 170-202 115-147 (386)
236 2v14_A Kinesin-like motor prot 80.2 0.94 3.2E-05 37.0 2.7 29 166-194 75-104 (134)
237 1kq6_A NCF-1, P47PHOX, neutrop 79.5 1.2 4.3E-05 36.5 3.2 35 169-203 86-121 (141)
238 3tca_A Amyloid beta A4 precurs 79.3 4.1 0.00014 37.0 7.1 86 212-301 32-118 (291)
239 3hk0_A Growth factor receptor- 79.2 4.1 0.00014 37.1 6.9 82 213-300 7-89 (256)
240 2v6v_A BUD emergence protein 1 72.5 1.7 5.7E-05 36.6 2.2 35 169-203 100-135 (156)
241 1c1y_B Proto-onkogene serine/t 69.0 4 0.00014 30.0 3.3 43 216-259 3-45 (77)
242 2l73_A NADPH oxidase organizer 68.2 2.2 7.6E-05 35.5 2.0 34 170-203 93-127 (149)
243 1wxm_A A-RAF proto-oncogene se 67.3 3.7 0.00013 30.9 2.8 36 216-251 9-44 (86)
244 2al3_A TUG long isoform; TUG U 63.0 4.5 0.00015 30.7 2.6 56 216-281 11-66 (90)
245 2c5l_C Phosphoinositide-specif 62.2 16 0.00053 29.1 5.8 81 215-298 10-105 (117)
246 2l05_A Serine/threonine-protei 61.6 5.6 0.00019 30.4 2.9 44 215-259 18-61 (95)
247 3ny5_A Serine/threonine-protei 59.2 7.5 0.00026 29.8 3.3 45 214-259 13-57 (96)
248 2kc2_A Talin-1, F1; FERM, adhe 55.0 14 0.00049 29.8 4.5 36 216-251 13-48 (128)
249 1rrb_A RAF-1 RBD, RAF proto-on 51.5 9 0.00031 29.9 2.6 37 216-252 20-56 (107)
250 2io0_B Small ubiquitin-related 44.7 28 0.00096 26.1 4.5 56 215-279 6-61 (91)
251 2d07_B Ubiquitin-like protein 38.8 44 0.0015 25.0 4.8 59 213-280 16-74 (93)
252 2io1_B Small ubiquitin-related 36.6 44 0.0015 25.1 4.5 57 214-279 7-63 (94)
253 3a4r_A Nfatc2-interacting prot 36.5 43 0.0015 24.2 4.3 37 214-250 7-44 (79)
254 2v1y_A Phosphatidylinositol-4, 36.3 48 0.0016 25.9 4.7 36 213-248 18-53 (108)
255 2k8h_A Small ubiquitin protein 34.4 40 0.0014 26.3 4.0 39 213-251 25-63 (110)
256 1wz0_A Ubiquitin-like protein 33.9 57 0.0019 25.1 4.8 58 213-279 23-80 (104)
257 3kyd_D Small ubiquitin-related 33.6 45 0.0016 26.3 4.2 59 213-280 39-97 (115)
258 2jxx_A Nfatc2-interacting prot 30.5 77 0.0026 24.1 4.9 41 211-251 22-63 (97)
259 1wm3_A Ubiquitin-like protein 29.4 57 0.0019 22.9 3.8 55 216-279 3-57 (72)
260 2l76_A Nfatc2-interacting prot 28.2 74 0.0025 24.2 4.4 35 215-250 22-56 (95)
261 2eke_C Ubiquitin-like protein 27.7 76 0.0026 24.5 4.5 59 212-280 29-87 (106)
262 2uwq_A Apoptosis-stimulating o 26.6 95 0.0033 23.1 4.6 78 213-299 5-85 (86)
No 1
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.65 E-value=1.8e-15 Score=122.17 Aligned_cols=100 Identities=75% Similarity=1.123 Sum_probs=88.6
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
..+||+|+|.|+..+|||++.++....+.+..+.+..+.|+++|..|.++|||+++||++||+|++|||.++.++++.++
T Consensus 4 ~~~~r~v~l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 83 (107)
T 3qe1_A 4 GGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQV 83 (107)
T ss_dssp --CCEEEEEECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCcEEEEEEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 46789999999999999999998666666667778888898889999999999999999999999999999998889999
Q ss_pred HHHHHhCCCeEEEEEEecCc
Q psy2827 86 VELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~~ 105 (373)
...++..++.+.+++.|..+
T Consensus 84 ~~~l~~~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 84 VDLIRAGEKELILTVLSVES 103 (107)
T ss_dssp HHHHHHCSSEEEEEEECSSC
T ss_pred HHHHHcCCCEEEEEEEcCCC
Confidence 99999889999999988543
No 2
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.61 E-value=6.4e-15 Score=113.47 Aligned_cols=78 Identities=22% Similarity=0.508 Sum_probs=71.5
Q ss_pred CCCcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
+..||+|+|.|++. +|||+++++ .|..+.++|||+++||++||+|++|||+++.++++++
T Consensus 2 ~~~~r~v~l~k~~~g~~Gf~i~~g-------------------~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~e 62 (82)
T 1r6j_A 2 AMDPRTITMHKDSTGHVGFIFKNG-------------------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ 62 (82)
T ss_dssp TTCCEEEEEECCTTSCCCEEEETT-------------------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHH
T ss_pred CCceEEEEEEECCCCCeEEEEECC-------------------EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Confidence 46789999999986 699999865 4789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEe
Q psy2827 85 VVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r 102 (373)
++++|++++..++|+|..
T Consensus 63 vv~llr~~g~~V~L~v~p 80 (82)
T 1r6j_A 63 IADILSTSGTVVTITIMP 80 (82)
T ss_dssp HHHHHHHSCSEEEEEEEE
T ss_pred HHHHHhcCCCEEEEEEEe
Confidence 999999989999999864
No 3
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.57 E-value=3.9e-14 Score=110.65 Aligned_cols=86 Identities=36% Similarity=0.558 Sum_probs=76.5
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
+.++||+|+|.|+..+|||++.+... .++++|..|.++|||+++||++||+|++|||.++.++++.+
T Consensus 1 s~~~~r~v~l~k~~~g~G~~~~~~~~-------------~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 67 (90)
T 2he4_A 1 SMLRPRLCHLRKGPQGYGFNLHSDKS-------------RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAE 67 (90)
T ss_dssp CTTCCEEEEEECBTTBCCEEEEECSS-------------SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHH
T ss_pred CCCCcEEEEEEECCCCccEEEEccCC-------------CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHH
Confidence 35689999999999999999988632 23568999999999999999999999999999999988899
Q ss_pred HHHHHHhCCCeEEEEEEec
Q psy2827 85 VVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~ 103 (373)
+..+++..+..+.++|.|.
T Consensus 68 ~~~~l~~~~~~v~l~v~r~ 86 (90)
T 2he4_A 68 VVASIKAREDEARLLVVGP 86 (90)
T ss_dssp HHHHHTTSSSEEEEEEECC
T ss_pred HHHHHHcCCCcEEEEEEcc
Confidence 9999988889999999874
No 4
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.54 E-value=6.9e-14 Score=117.50 Aligned_cols=104 Identities=34% Similarity=0.497 Sum_probs=82.7
Q ss_pred CCCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827 2 YSTQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 2 ~~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~ 80 (373)
+|+...++|+|+|.|.+ .+|||+|.++..............+.++++|..|.++|||+++||++||+|++|||+++.++
T Consensus 21 ~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~ 100 (132)
T 3l4f_D 21 GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 100 (132)
T ss_dssp SCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTS
T ss_pred CCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCC
Confidence 35566789999999965 78999999985432111001112234467999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
++.++...++..+..+.++|.+...
T Consensus 101 ~~~~~~~~l~~~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 101 GHRQVVNMIRQGGNTLMVKVVMVTR 125 (132)
T ss_dssp CHHHHHHHHHHTTTEEEEEEECCCC
T ss_pred CHHHHHHHHHcCCCEEEEEEEECCC
Confidence 9999999999988999999987644
No 5
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.53 E-value=1.8e-14 Score=112.82 Aligned_cols=86 Identities=31% Similarity=0.517 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
+++||+|+|.|++.+|||++.+... .++++|..|.++|||+++||++||+|++|||+++.+++++++
T Consensus 1 ~~~pr~v~l~k~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 67 (91)
T 2vsp_A 1 SMKPKLCRLAKGENGYGFHLNAIRG-------------LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKV 67 (91)
T ss_dssp -CCEEEEEEECBTTBTSCCCBCCTT-------------CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCcEEEEEEeCCCcccEEEEeccC-------------CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 4689999999999999999976532 123479999999999999999999999999999997779999
Q ss_pred HHHHHhCCCeEEEEEEecC
Q psy2827 86 VELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~ 104 (373)
..+++..++.+.++|.|..
T Consensus 68 ~~~l~~~g~~v~l~v~r~~ 86 (91)
T 2vsp_A 68 VDRIQSSGKNVTLLVCGKK 86 (91)
T ss_dssp HHHHTTSCSEEEEEEEC--
T ss_pred HHHHHcCCCEEEEEEEeCC
Confidence 9999887899999998743
No 6
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.53 E-value=7.8e-14 Score=109.88 Aligned_cols=86 Identities=36% Similarity=0.580 Sum_probs=75.2
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
+|+.||+++|.|+..+|||++.+.... .+++|..|.++|||+++||++||+|++|||.++.++++++
T Consensus 2 sp~~~r~v~l~~~~~~~G~~l~~~~~~-------------~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 68 (95)
T 3r68_A 2 SPHQPRVVVIKKGSNGYGFYLRAGPEQ-------------KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDG 68 (95)
T ss_dssp CCCCCEEEEEECBTTBCSCEEEEC--C-------------CSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHH
T ss_pred CCCCcEEEEEecCCCcccEEEEecCCC-------------CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHH
Confidence 578999999999999999999876321 2458999999999999999999999999999999988899
Q ss_pred HHHHHHhCCCeEEEEEEec
Q psy2827 85 VVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~ 103 (373)
+..+++..+..+.+++.+.
T Consensus 69 ~~~~l~~~~~~~~~~~~r~ 87 (95)
T 3r68_A 69 VVEMIRKGGDQTTLLVLDK 87 (95)
T ss_dssp HHHHHHTTTTEEEEEEEEC
T ss_pred HHHHHHhCCCeEEEEEECC
Confidence 9999999778888887763
No 7
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.53 E-value=1.2e-13 Score=109.13 Aligned_cols=88 Identities=36% Similarity=0.532 Sum_probs=76.4
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
++||+|+|.|++.+|||++.+..+.+ ...+++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus 2 ~~~r~v~l~k~~~~~G~~l~~~~~~~----------~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~ 71 (96)
T 2v90_A 2 MKPRCLHLEKGPQGFGFLLREEKGLD----------GRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETV 71 (96)
T ss_dssp CCCEEEEEECBTTBSCEEEEEEECTT----------SCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHH
T ss_pred CCCEEEEEEeCCCcccEEEEeccCCC----------CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 47899999999999999998753211 12346899999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEecC
Q psy2827 87 ELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~ 104 (373)
..++..++.+.++|.|..
T Consensus 72 ~~l~~~g~~v~l~v~r~~ 89 (96)
T 2v90_A 72 SRIQGQGSCVSLTVVDPE 89 (96)
T ss_dssp HHHHTTTTEEEEEEECCC
T ss_pred HHHHcCCCEEEEEEECCC
Confidence 999988899999998854
No 8
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.52 E-value=1.6e-13 Score=109.97 Aligned_cols=88 Identities=34% Similarity=0.591 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
.+.+..+++|+|.|++.+|||++.++.+ .++++|..|.++|||+++| |++||+|++|||.++.+++
T Consensus 6 ~~~~~~~~~v~l~k~~~glG~~~~~~~~-------------~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 72 (104)
T 3i4w_A 6 EDIPREPRRIVIHRGSTGLGFNIVGGEX-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72 (104)
T ss_dssp CCCCSSCEEEEEECBTTBTSEEEEECC--------------CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCC
T ss_pred CCCCCccEEEEEEeCCCccCEEEECCCC-------------CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 4678899999999999999999988632 2356899999999999999 9999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEEec
Q psy2827 82 HKQVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~ 103 (373)
+.++...++..++.+.++|.|.
T Consensus 73 ~~~~~~~~~~~~~~v~l~v~r~ 94 (104)
T 3i4w_A 73 HEQAAIALKNAGQTVTIIAQYK 94 (104)
T ss_dssp HHHHHHHHHTSCSEEEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEEC
Confidence 9999999988889999999874
No 9
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.51 E-value=1.7e-13 Score=107.35 Aligned_cols=84 Identities=31% Similarity=0.482 Sum_probs=73.4
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.++|+|++.|+..+|||++.+. .+ ++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus 2 ~~~r~v~l~~~~~g~G~~l~~~---------------~~-~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~ 65 (91)
T 2f5y_A 2 MRYRQITIPRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELA 65 (91)
T ss_dssp CEEEEEEEECBTTBTSEEEECS---------------SS-CEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CceEEEEEEeCCCCccEEEecC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 4679999999999999999764 12 4799999999999999999999999999999988899999
Q ss_pred HHHHhCCCeEEEEEEecCcc
Q psy2827 87 ELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~~ 106 (373)
..++..+..+.++|.|..+.
T Consensus 66 ~~l~~~~~~v~l~v~R~~~~ 85 (91)
T 2f5y_A 66 HEIRSCPSEIILLVWRMVPQ 85 (91)
T ss_dssp HHHHTCSSEEEEEEEECC--
T ss_pred HHHHcCCCeEEEEEEeCCCC
Confidence 99988778899999986654
No 10
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.51 E-value=2.7e-13 Score=105.96 Aligned_cols=83 Identities=37% Similarity=0.550 Sum_probs=71.4
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..||+|+|.|++.+|||++.++.+ .++++|..|.++|||+++||++||+|++|||+++.++++.++.
T Consensus 2 ~~~r~v~l~r~~~g~G~~~~~~~~-------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~ 68 (91)
T 1g9o_A 2 MLPRLCCLEKGPNGYGFHLHGEKG-------------KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVV 68 (91)
T ss_dssp CCCEEEEEECBTTBCCEEEEECTT-------------CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CccEEEEEEeCCCcccEEEEecCC-------------CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 468999999999999999988632 1345899999999999999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEe
Q psy2827 87 ELIKSGGDVLSLTVIS 102 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r 102 (373)
..++..+..+.+.+.+
T Consensus 69 ~~l~~~~~~~~~~~~~ 84 (91)
T 1g9o_A 69 SRIRAALNAVRLLVVD 84 (91)
T ss_dssp HHHHTCSSEEEEEEEC
T ss_pred HHHHcCCCcEEEEEEc
Confidence 9999865666555543
No 11
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.50 E-value=1.5e-13 Score=113.57 Aligned_cols=94 Identities=27% Similarity=0.411 Sum_probs=73.0
Q ss_pred CCCCCCcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCC
Q psy2827 3 STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~ 80 (373)
.+.+..+++|+|.|++. +|||++.++.+.+. ...+++|..|.++|||+++ ||++||+|++|||+++.++
T Consensus 19 ~s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~---------~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~ 89 (120)
T 2iwo_A 19 YFQSMGLRTVEMKKGPTDSLGISIAGGVGSPL---------GDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGM 89 (120)
T ss_dssp ------CEEEEEEC----CCCEEEEEEEEETT---------EEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTC
T ss_pred CCCCCCcEEEEEEcCCCCCCCEEEecccCCCC---------CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCC
Confidence 45677889999999985 99999998743210 1224589999999999999 8999999999999999999
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
++.++..+++..+..++|+|.|...
T Consensus 90 ~~~~~~~~l~~~~~~v~l~v~r~g~ 114 (120)
T 2iwo_A 90 THTQAVNLLKNASGSIEMQVVAGGD 114 (120)
T ss_dssp BHHHHHHHHHHCCSEEEEEEECCTT
T ss_pred CHHHHHHHHHcCCCeEEEEEEECCc
Confidence 9999999999988889999988543
No 12
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.8e-13 Score=106.24 Aligned_cols=87 Identities=36% Similarity=0.634 Sum_probs=74.8
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
+...+|+|+|.|+..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus 2 ~~~~~r~v~l~k~~~glG~~l~~~~~~------------~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~ 69 (93)
T 2dkr_A 2 SSGSSGVVELPKTDEGLGFNIMGGKEQ------------NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE 69 (93)
T ss_dssp CSSCSCEEEEECCTTCCCEEEECSSSS------------SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHH
T ss_pred CCCCCEEEEEEeCCCCccEEEecccCC------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 356789999999999999999876322 1235899999999999996 999999999999999988899
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++..+..+.++|.|.
T Consensus 70 ~~~~~~~~~~~~v~l~v~r~ 89 (93)
T 2dkr_A 70 KAVELLKAAQGSVKLVVRSG 89 (93)
T ss_dssp HHHHHHHHCCSEEEEEECCC
T ss_pred HHHHHHHhCCCcEEEEEEeC
Confidence 99999988777889988764
No 13
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.49 E-value=6.3e-13 Score=104.91 Aligned_cols=91 Identities=43% Similarity=0.569 Sum_probs=77.4
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
.+..+++|+|.|++.+|||++.++.+... ...+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus 2 ~~g~~~~v~l~k~~~~lG~~i~~g~~~~~---------~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~ 72 (96)
T 1d5g_A 2 KPGDIFEVELAKNDNSLGISVTGGVNTSV---------RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK 72 (96)
T ss_dssp CTTCEEEEEEECSSSSCCEEEECCSSSCS---------SSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCEEEEEEEeCCCCCCEEEECCCCCCC---------CcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 46678999999999999999998643211 12345899999999999999 999999999999999988899
Q ss_pred HHHHHHHhCCCeEEEEEEecC
Q psy2827 84 QVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++...++..++.+.++|.|..
T Consensus 73 ~~~~~l~~~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 73 QAVETLRNTGQVVHLLLEKGQ 93 (96)
T ss_dssp HHHHHHHSCCSEEEEEEECCS
T ss_pred HHHHHHHcCCCeEEEEEEcCC
Confidence 999999888899999998743
No 14
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.48 E-value=4.2e-13 Score=106.09 Aligned_cols=92 Identities=29% Similarity=0.496 Sum_probs=73.4
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
++.+|+|+|.|++ .+|||++.+.... .-....+..+++|..|.++|||+++||++||+|++|||+++.++++++
T Consensus 2 ~~~~r~v~l~k~~~~~~Gf~l~~~g~~-----~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 76 (96)
T 2ego_A 2 SQQRKVLTLEKGDNQTFGFEIQTYGLH-----HREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHRE 76 (96)
T ss_dssp CCCEEEEEEECCTTCCCSEEEEEEEC------------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCccEEEEEEeCCCCCccEEEEecccc-----ccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 4678999999998 5899999872100 000111233568999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEe
Q psy2827 85 VVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r 102 (373)
+..+++..+..+.++|.+
T Consensus 77 ~~~~l~~~~~~v~l~v~~ 94 (96)
T 2ego_A 77 IVDIIKASGNVLRLETLY 94 (96)
T ss_dssp HHHHHHHTTTEEEEEEEC
T ss_pred HHHHHHhCCCeEEEEEEE
Confidence 999999877789998865
No 15
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-13 Score=109.05 Aligned_cols=93 Identities=22% Similarity=0.370 Sum_probs=77.2
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
.....+++|+|.|++.+|||++.++.+.. .+..++++|..|.++|||+++| |++||+|++|||+++.+++|
T Consensus 11 ~~~~~~~~v~l~k~~~glG~~i~~~~~~~--------~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~ 82 (108)
T 2d92_A 11 LWSPEVKIVELVKDCKGLGFSILDYQDPL--------DPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSL 82 (108)
T ss_dssp SSCSSCEEEEEEECSSCCSEEEEEEECSS--------CTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCH
T ss_pred ccCCceEEEEEEECCCccCEEEecccccC--------CCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence 34456799999999999999999864310 0112456899999999999999 99999999999999999999
Q ss_pred HHHHHHHHh-CCCeEEEEEEecC
Q psy2827 83 KQVVELIKS-GGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~-~g~~v~l~V~r~~ 104 (373)
+++..+++. .+..+.|+|.|..
T Consensus 83 ~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 83 AEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp HHHHHHHHHSCSEEEEEEEECCC
T ss_pred HHHHHHHHhCCCCeEEEEEEcCC
Confidence 999999998 5678999998743
No 16
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=2e-13 Score=112.25 Aligned_cols=91 Identities=29% Similarity=0.495 Sum_probs=76.3
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
..+.+++|+|.|++.+|||++.++.+.+. ...+++|..|.++|||+++| |++||+|++|||.++.++++.
T Consensus 22 ~~~~~~~v~L~k~~~glGf~l~~g~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~ 92 (117)
T 2fne_A 22 SMPQCKSITLERGPDGLGFSIVGGYGSPH---------GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE 92 (117)
T ss_dssp -CCEEEEEEECCBTTBTSEEEEEEEEETT---------EEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred CCCccEEEEEEeCCCcccEEEecccCCCC---------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 45677899999999999999998743210 01245899999999999999 999999999999999988899
Q ss_pred HHHHHHHhCCCeEEEEEEecC
Q psy2827 84 QVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++...++..+..+.++|.|..
T Consensus 93 ~~~~~l~~~~~~v~l~v~R~g 113 (117)
T 2fne_A 93 EAVAILKRTKGTVTLMVLSSD 113 (117)
T ss_dssp HHHHHHHHCCSSEEEEEEECS
T ss_pred HHHHHHHcCCCeEEEEEEeCC
Confidence 999999987677999998754
No 17
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.48 E-value=6e-13 Score=107.36 Aligned_cols=99 Identities=23% Similarity=0.348 Sum_probs=79.9
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~ 82 (373)
.....+++|+|.|+..+|||++.++.+..+. .......+++|..|.++|||+++ ||++||+|++|||+++.++++
T Consensus 4 ~~~~~~~~v~l~k~~~~lG~~i~g~~~~~~~----~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~ 79 (107)
T 1uhp_A 4 GSSGKSLTLVLHRDSGSLGFNIIGGRPSVDN----HDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH 79 (107)
T ss_dssp CCSSEEEEEEECCSSSCCSEEEECCCSCCCC----TTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCH
T ss_pred CcCcEEEEEEEEeCCCccCEEEEcCCCCccc----ccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 3456789999999989999999987432110 00111345689999999999999 899999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEecCcc
Q psy2827 83 KQVVELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~~~ 106 (373)
.++...++..++.+.++|.|..+.
T Consensus 80 ~~~~~~~~~~~~~v~l~v~R~~~~ 103 (107)
T 1uhp_A 80 DQAVEAFKTAKEPIVVQVLRRTSG 103 (107)
T ss_dssp HHHHHHHHHCCSSEEEEEEECCSS
T ss_pred HHHHHHHHcCCCcEEEEEEeCCCC
Confidence 999999998888999999886553
No 18
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.48 E-value=6.4e-13 Score=103.80 Aligned_cols=87 Identities=26% Similarity=0.369 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827 3 STQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~ 80 (373)
||.|...++|++.|.+ .+|||++.++.. ..+++|..|.++|||+++||++||+|++|||+++.++
T Consensus 1 ~p~~~~~~~v~l~k~~~~~~~G~~~~~~~~-------------~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~ 67 (91)
T 1m5z_A 1 SPTPVELHKVTLYKDSGMEDFGFSVADGLL-------------EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDF 67 (91)
T ss_dssp CCSCCEEEEEEEECCTTCSSSSEEEEECTT-------------SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTC
T ss_pred CCCCcceEEEEEEECCCCCCccEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCC
Confidence 5677888999999976 479999988632 1346899999999999999999999999999999998
Q ss_pred CHHHHHHHHHhCCCeEEEEEEe
Q psy2827 81 THKQVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r 102 (373)
++.++...++..++.+.++|.|
T Consensus 68 ~~~~~~~~~~~~g~~v~l~v~R 89 (91)
T 1m5z_A 68 DCCLVVPLIAESGNKLDLVISR 89 (91)
T ss_dssp CHHHHHHHHHTSTTEEEEEEEE
T ss_pred CHHHHHHHHHcCCCEEEEEEEe
Confidence 8888888888888899999876
No 19
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.48 E-value=3.8e-13 Score=107.26 Aligned_cols=93 Identities=27% Similarity=0.431 Sum_probs=77.7
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
++.+++|+|.|++.+|||++.++.+.+. .+...+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus 5 ~~~~~~v~l~~~~~~lG~~l~~g~~~~~-------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 77 (101)
T 2jik_A 5 LVTEEEINLTRGPSGLGFNIVGGTDQQY-------VSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 77 (101)
T ss_dssp GEEEEEEEEECCTTCCCEEEEECTTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHH
T ss_pred CCccEEEEEEeCCCCCCEEEeccccCCC-------ccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 4567899999999999999998744211 0012356899999999999999 9999999999999999988999
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+...++..++.+.++|.|..+
T Consensus 78 ~~~~~~~~g~~v~l~v~R~~~ 98 (101)
T 2jik_A 78 AVDLFRNAGYAVSLRVQHRLE 98 (101)
T ss_dssp HHHHHHTCCSEEEEEEEEESC
T ss_pred HHHHHHhCCCeEEEEEEeCCC
Confidence 999998888899999987543
No 20
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.48 E-value=5.1e-13 Score=104.21 Aligned_cols=86 Identities=29% Similarity=0.456 Sum_probs=74.3
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~~ 83 (373)
...+++|++.|.+ .+|||++.++.+. ..+++|..|.++|||+++ ||++||+|++|||+++.++++.
T Consensus 2 ~~~~~~v~l~k~~~~~lG~~i~~~~~~------------~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~ 69 (90)
T 1qav_A 2 SLQRRRVTVRKADAGGLGISIKGGREN------------KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD 69 (90)
T ss_dssp CSSCEEEEEECCTTTCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHH
T ss_pred CCccEEEEEEeCCCCCcCEEEEcccCC------------CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence 3578999999964 7899999886331 134589999999999999 8999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++..+..+.++|.|.
T Consensus 70 ~~~~~~~~~~~~v~l~v~r~ 89 (90)
T 1qav_A 70 EAVQALKKTGKEVVLEVKYM 89 (90)
T ss_dssp HHHHHHHTCCSEEEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEEEEe
Confidence 99999998888999998764
No 21
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.47 E-value=3.5e-13 Score=110.99 Aligned_cols=91 Identities=25% Similarity=0.403 Sum_probs=77.2
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
+..+++|++.|++ .+|||++.++.+.. ....+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus 22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~---------~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~ 92 (118)
T 3b76_A 22 SMHEKVVNIQKDPGESLGMTVAGGASHR---------EWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS 92 (118)
T ss_dssp EEEEEEEEEECCTTCCCCEEEEECSCST---------TCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHH
T ss_pred CCCcEEEEEEeCCCCccCEEEecCCCCC---------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence 4567889999986 78999999874321 113456899999999999999 999999999999999988899
Q ss_pred HHHHHHHhCCCeEEEEEEecCc
Q psy2827 84 QVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
++..+++..+..+.|+|.|..+
T Consensus 93 ~~~~~l~~~~~~v~L~v~R~~~ 114 (118)
T 3b76_A 93 EAVALLKRTSSSIVLKALEVKE 114 (118)
T ss_dssp HHHHHHHSCCSEEEEEEEEEEE
T ss_pred HHHHHHHcCCCeEEEEEEECCC
Confidence 9999999988999999988543
No 22
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.47 E-value=7.9e-13 Score=106.26 Aligned_cols=92 Identities=32% Similarity=0.500 Sum_probs=76.8
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.+.++|+|.|++.+|||++.++.+.+.. +...+++|..|.++|||+++| |++||+|++|||+++.+.++.++
T Consensus 2 e~~~~v~l~k~~~glG~~i~gg~~~~~~-------~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 74 (105)
T 2awx_A 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHI-------PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA 74 (105)
T ss_dssp -CEEEEEEECBTTBSSEEEEECBTSCSB-------TTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHH
T ss_pred CeEEEEEEEECCCCCCEEEeCccCCCCC-------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 3567899999999999999987543210 112356899999999999999 99999999999999998889999
Q ss_pred HHHHHhCCCeEEEEEEecCc
Q psy2827 86 VELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~~ 105 (373)
...++..+..+.++|.|...
T Consensus 75 ~~~~~~~~~~v~l~v~R~~~ 94 (105)
T 2awx_A 75 VTALKNTSDFVYLKVAKPTS 94 (105)
T ss_dssp HHHHHSCCSEEEEEEECCCC
T ss_pred HHHHHcCCCeEEEEEEcCCC
Confidence 99998888999999988543
No 23
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.46 E-value=9.7e-13 Score=103.33 Aligned_cols=89 Identities=31% Similarity=0.512 Sum_probs=74.6
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..++|+|.|++.+|||++.++.+.+. .+...+++|..|.++|||+++| |++||+|++|||+++.++++.++.
T Consensus 3 ~~~~v~l~k~~~g~G~~i~gg~~~~~-------~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 75 (94)
T 2fe5_A 3 TIMEVNLLKGPKGLGFSIAGGIGNQH-------IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75 (94)
T ss_dssp CEEEEEEECCTTCSCEEEEECBTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHH
T ss_pred EEEEEEEEECCCCCCEEEEcccCCCC-------CCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 46889999999999999998754221 0112356899999999999999 999999999999999998899999
Q ss_pred HHHHhCCCeEEEEEEec
Q psy2827 87 ELIKSGGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~ 103 (373)
..++..+..+.++|.|.
T Consensus 76 ~~~~~~~~~v~l~v~R~ 92 (94)
T 2fe5_A 76 ASLKNTSDMVYLKVAKP 92 (94)
T ss_dssp HHHHTCCSEEEEEEECC
T ss_pred HHHHcCCCeEEEEEEcC
Confidence 99988777899998763
No 24
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-13 Score=108.82 Aligned_cols=87 Identities=34% Similarity=0.546 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
.++..||+|+|.|+..+|||++.+..+ ..+++|..|.++|||+++||++||+|++|||+++.++++.
T Consensus 2 s~~~~~r~v~l~k~~~g~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 68 (102)
T 2d90_A 2 SSGSSGRVVVIKKGSNGYGFYLRAGPE-------------QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHD 68 (102)
T ss_dssp CSCSSSEEEEEECCSSSSSCEEEECSS-------------SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHH
T ss_pred CCCCCCEEEEEeeCCCCccEEEEeecC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 467789999999999999999987532 1245899999999999999999999999999999998899
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++..++.+.+++.|.
T Consensus 69 ~~~~~l~~~g~~v~l~v~r~ 88 (102)
T 2d90_A 69 GVVEMIRKGGDQTTLLVLDK 88 (102)
T ss_dssp HHHHHHHHSTTEEEEEECST
T ss_pred HHHHHHHcCCCEEEEEEEEC
Confidence 99999988889999999764
No 25
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.46 E-value=3.6e-13 Score=105.05 Aligned_cols=84 Identities=30% Similarity=0.570 Sum_probs=72.3
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.+++|+|.|+..+|||++.++.+.+ .| ++|..|.++|||+++| |++||+|++|||.++.+.++.++.
T Consensus 2 ~~~~v~l~~~~~g~G~~~~~g~~~~-----------~~-~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~ 69 (90)
T 2q9v_A 2 MEQDIFLWRKETGFGFRILGGNEPG-----------EP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVV 69 (90)
T ss_dssp EEEEEEEECBTTBCCEEEEECSSTT-----------SC-EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred CcEEEEEEECCCccCEEEEccccCC-----------CC-EEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 5789999999999999999863321 23 5899999999999999 999999999999999888899999
Q ss_pred HHHHhC--CCeEEEEEEec
Q psy2827 87 ELIKSG--GDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~~--g~~v~l~V~r~ 103 (373)
..++.. +..+.++|.|.
T Consensus 70 ~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 70 QLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp HHHHHHHHHTEEEEEEEEC
T ss_pred HHHHhCCCCCeEEEEEEec
Confidence 999874 45899998763
No 26
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.46 E-value=1.1e-12 Score=106.12 Aligned_cols=97 Identities=34% Similarity=0.557 Sum_probs=76.3
Q ss_pred CcEEEEEEcC-CCCccEEEEecccCCCccccccc-cccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKS-DTGFGFNVRGQVSEGGQLRSING-ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~-~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.+++++|.|. ..+|||++.++...+... .... ..+.++++|..|.++|||+++||++||+|++|||+++.++++.++
T Consensus 7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~-~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~ 85 (109)
T 1q3o_A 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIE-EFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV 85 (109)
T ss_dssp EEEEEEEECCTTSCCSEEEEESSCCCTTS-CCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHH
T ss_pred CcEEEEEEECCCCCCcEEEEeccCCCCcc-cccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 5788999855 468999999875421110 0111 112346789999999999999999999999999999999888999
Q ss_pred HHHHHhCCCeEEEEEEecCc
Q psy2827 86 VELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~~ 105 (373)
..+++..++.+.++|.+..+
T Consensus 86 ~~~l~~~~~~v~l~v~~~~~ 105 (109)
T 1q3o_A 86 VNMIRQGGNTLMVKVVMVTR 105 (109)
T ss_dssp HHHHHHTTTEEEEEEEEEEC
T ss_pred HHHHHhCCCEEEEEEEECCC
Confidence 99998888899999988654
No 27
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.46 E-value=6.3e-13 Score=107.68 Aligned_cols=95 Identities=26% Similarity=0.374 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
|..+...++|+|.|++.+|||++.++...+. ..++++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus 3 s~~~~~~~~v~l~~~~~glG~~l~~g~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 73 (110)
T 1um1_A 3 SGSSGYVFTVELERGPSGLGMGLIDGMHTHL---------GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG 73 (110)
T ss_dssp CCSCCCEEEEEEECCTTCCCEEEEETTTSTT---------CCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCC
T ss_pred CCCCCcEEEEEEEECCCccCEEEeCCcCCCC---------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 5667788999999999999999998643210 13456899999999999999 9999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~~ 106 (373)
+.++...++..++.+.|+|.|....
T Consensus 74 ~~~~~~~~~~~~~~v~l~v~R~~~~ 98 (110)
T 1um1_A 74 YLRAVDLIRHGGKKMRFLVAKSDVE 98 (110)
T ss_dssp HHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred HHHHHHHHHcCCCeEEEEEEeCCcc
Confidence 9999999998889999999986543
No 28
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.46 E-value=4.7e-13 Score=107.51 Aligned_cols=89 Identities=24% Similarity=0.491 Sum_probs=76.1
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
....+.|++.|+..+|||++.++.+.. .|.++|..|.+++||+++| |++||+|++|||+++.+++|++
T Consensus 4 g~~~~~v~l~k~~~glG~~i~gg~~~~-----------~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~ 72 (103)
T 1ufx_A 4 GSSGTLVRVKKSAATLGIAIEGGANTR-----------QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHRE 72 (103)
T ss_dssp CSSSEEEEEECCSSSCCEEEECBTTSS-----------CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHH
T ss_pred CCceEEEEEEcCCCcCCeEEECCCCCC-----------CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 345788999999999999999875421 2555899999999999999 9999999999999999999999
Q ss_pred HHHHHHh-----CCCeEEEEEEecCc
Q psy2827 85 VVELIKS-----GGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~-----~g~~v~l~V~r~~~ 105 (373)
++++++. .+++++++|.|...
T Consensus 73 ~~~~l~~~~~~~~~~~i~l~v~r~~~ 98 (103)
T 1ufx_A 73 AARIIAEAFKTKDRDYIDFLVTEFNS 98 (103)
T ss_dssp HHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred HHHHHHHhcccCCCCeEEEEEEEccc
Confidence 9999987 57889999887643
No 29
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.45 E-value=8.9e-13 Score=104.23 Aligned_cols=90 Identities=28% Similarity=0.499 Sum_probs=75.6
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
+..+|++.|++.+|||++.++.+.+. ....+++|..|.++|||+++| |++||+|++|||+++.+++++++.
T Consensus 3 ~~~~v~l~k~~~~lG~~i~~~~~~~~--------~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~ 74 (97)
T 2jil_A 3 RTVEVTLHKEGNTFGFVIRGGAHDDR--------NKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 74 (97)
T ss_dssp EEEEEEEECBTTBCSEEEEEECCSCC----------CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred eEEEEEEEeCCCccCEEEeCcccCCC--------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 45778999988999999998743210 012345899999999999999 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEecCc
Q psy2827 87 ELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~ 105 (373)
.+++..++.+.++|.|...
T Consensus 75 ~~l~~~g~~v~l~v~R~~~ 93 (97)
T 2jil_A 75 SILKQCGQEAALLIEYDVS 93 (97)
T ss_dssp HHHHHSCSEEEEEEEEECC
T ss_pred HHHHcCCCeEEEEEEeCCC
Confidence 9999888999999988543
No 30
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.45 E-value=6.1e-13 Score=104.58 Aligned_cols=86 Identities=43% Similarity=0.648 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~ 82 (373)
+..+..+|+|++.|+..+|||++.+. .+++|..|.++|||+++||++||+|++|||+++.+.++
T Consensus 3 ~~~~~~~r~v~l~~~~~~~G~~l~~~----------------~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~ 66 (93)
T 2dls_A 3 SGSSGVQRCVIIQKDQHGFGFTVSGD----------------RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSH 66 (93)
T ss_dssp CCCCCCEEEEEEECSSSSCCEEEECS----------------SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCH
T ss_pred CCCCCCCEEEEEEeCCCceeEEEeCC----------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence 46778899999999999999999764 12479999999999999999999999999999999888
Q ss_pred HHHHHHHHhCCCeEEEEEEecCc
Q psy2827 83 KQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++...++ .++.+.++|.|..+
T Consensus 67 ~~~~~~~~-~g~~v~l~v~R~~~ 88 (93)
T 2dls_A 67 LEVVKLIK-SGAYVALTLLGSSS 88 (93)
T ss_dssp HHHHHHHT-SSSEEEEEEECCCC
T ss_pred HHHHHhhc-CCCEEEEEEEECCC
Confidence 88777776 58999999988543
No 31
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.45 E-value=1.1e-12 Score=101.64 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=71.7
Q ss_pred CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.+++|+|.|++ .+|||++.++... ..+++|..|.++|||++ +||++||+|++|||+++.+++|.++
T Consensus 2 ~~~~v~l~~~~~~~lG~~i~~~~~~------------~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~ 69 (87)
T 4e34_A 2 PIRKVLLLKEDHEGLGISITGGKEH------------GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA 69 (87)
T ss_dssp CCEEEEEECCTTBCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEECCCCcccEEEEccCCC------------CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 57899999986 5899999886432 12358999999999999 6999999999999999999889999
Q ss_pred HHHHHhCCCeEEEEEEe
Q psy2827 86 VELIKSGGDVLSLTVIS 102 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r 102 (373)
...++.+++.+.++|..
T Consensus 70 ~~~~~~~~~~v~l~v~~ 86 (87)
T 4e34_A 70 VTILSQQRGEIEFEVVY 86 (87)
T ss_dssp HHHHHHCCSEEEEEEEE
T ss_pred HHHHHcCCCeEEEEEEE
Confidence 99999888889988864
No 32
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.45 E-value=1.3e-12 Score=104.25 Aligned_cols=91 Identities=29% Similarity=0.509 Sum_probs=76.9
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..++|+|.|++.+|||++.++.+.+. ....++++|..|.++|||+++| |++||+|++|||.++.+.++.++.
T Consensus 4 ~~~~v~l~k~~~glG~~i~~g~~~~~-------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~ 76 (102)
T 2i1n_A 4 KYEEIVLERGNSGLGFSIAGGIDNPH-------VPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAV 76 (102)
T ss_dssp EEEEEEEECBTTBTSEEEEECTTSCS-------STTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred eEEEEEEEECCCcCCEEEEcccCCCC-------cCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 45789999999999999998744211 0113456899999999999999 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEecCc
Q psy2827 87 ELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~ 105 (373)
..++..+..+.++|.|...
T Consensus 77 ~~~~~~g~~v~l~v~R~~~ 95 (102)
T 2i1n_A 77 EALKEAGPVVRLVVRRRQP 95 (102)
T ss_dssp HHHHHSCSEEEEEEEEECC
T ss_pred HHHHcCCCeEEEEEEeCCC
Confidence 9998888999999988553
No 33
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.45 E-value=5.6e-13 Score=108.22 Aligned_cols=83 Identities=30% Similarity=0.470 Sum_probs=71.2
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..||+|+|.|++.+|||++.+. .| ++|..|.++|||++|||++||+|++|||+++.+++++++.
T Consensus 22 ~~~r~v~l~k~~~~~G~~l~~~---------------~~-v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~ 85 (109)
T 2vsv_A 22 SMPRSIRFTAEEGDLGFTLRGN---------------AP-VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVM 85 (109)
T ss_dssp HSCEEEEECCGGGCCCEEEESS---------------SS-CEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred CCCEEEEEEeCCCceeEEEeCC---------------CC-eEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 4689999999989999999754 22 3799999999999999999999999999999987799999
Q ss_pred HHHHhC-CCeEEEEEEecCc
Q psy2827 87 ELIKSG-GDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~-g~~v~l~V~r~~~ 105 (373)
++++.. +.++.++|.+..+
T Consensus 86 ~~i~~~~~~~v~l~V~~~~~ 105 (109)
T 2vsv_A 86 KLLKSFGEDEIEMKVVSLLD 105 (109)
T ss_dssp HHHHTTTTSCEEEEEESCC-
T ss_pred HHHHhCCCCeEEEEEEECCC
Confidence 999885 4469999987543
No 34
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=109.25 Aligned_cols=89 Identities=26% Similarity=0.424 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~ 82 (373)
++..++||+|+|.|+..+|||++.+... ..+++|..|.++|||+++||++||+|++|||+++.++++
T Consensus 3 ~~~~~~~r~v~l~k~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~ 69 (106)
T 2eei_A 3 SGSSGQPRLCYLVKEGGSYGFSLKTVQG-------------KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASH 69 (106)
T ss_dssp SCCCSSSEEEEEECCSSSCSCCEECCSS-------------CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCH
T ss_pred CCCCCCCEEEEEEECCCCCCEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence 4567899999999998999999986532 134579999999999999999999999999999998889
Q ss_pred HHHHHHHHhCCCeEEEEEEecC
Q psy2827 83 KQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.++...++..++.+.+++.|..
T Consensus 70 ~~~~~~~~~~~~~v~l~v~r~~ 91 (106)
T 2eei_A 70 EEVVEKVKKSGSRVMFLLVDKE 91 (106)
T ss_dssp HHHHHHHHHHCSEEEEEECCTT
T ss_pred HHHHHHHHhCCCeEEEEEEcCc
Confidence 9999999877888999987643
No 35
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.44 E-value=1.6e-12 Score=102.93 Aligned_cols=88 Identities=26% Similarity=0.418 Sum_probs=76.0
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
..+++|++.|+..+|||++.++.+.+ ..+++|..|.++|||+++| |++||+|++|||.++.++++.++
T Consensus 3 g~~~~v~l~~~~~~lG~~l~~~~~~~-----------~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~ 71 (98)
T 2opg_A 3 GCETTIEISKGRTGLGLSIVGGSDTL-----------LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEA 71 (98)
T ss_dssp CEEEEEEEECBTTBTCEEEEECTTST-----------TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCEEEEEEEECCCcccEEEecCCCCC-----------CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 46789999999999999999864321 1356899999999999999 99999999999999999889999
Q ss_pred HHHHHhCCCeEEEEEEecCc
Q psy2827 86 VELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~~ 105 (373)
...++..++.+.++|.|...
T Consensus 72 ~~~~~~~~~~v~l~v~R~~~ 91 (98)
T 2opg_A 72 INVLRQTPQRVRLTLYRDEA 91 (98)
T ss_dssp HHHHHTCCSEEEEEEEECSS
T ss_pred HHHHHhCCCeEEEEEEcCCC
Confidence 99998877999999988543
No 36
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.44 E-value=9.7e-13 Score=106.71 Aligned_cols=89 Identities=21% Similarity=0.486 Sum_probs=75.1
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
.+...++|++.|+ .+|||++.++.+... .++++|..|.+++||+++| |++||+|++|||+++.+++|+
T Consensus 12 ~~~~~~~v~l~k~-~glG~~i~gg~~~~~----------~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~ 80 (109)
T 1wi4_A 12 RDPAFRVITVTKE-TGLGLKILGGINRNE----------GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE 80 (109)
T ss_dssp CCTTEEEEEECCS-SCCCEEEEECSSSSS----------CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHH
T ss_pred CCCcEEEEEEeCC-CccCEEEEeccCCCC----------CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence 3446688999887 899999998754211 2346899999999999999 999999999999999999999
Q ss_pred HHHHHHHh-C---CCeEEEEEEecC
Q psy2827 84 QVVELIKS-G---GDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~-~---g~~v~l~V~r~~ 104 (373)
+++++++. . +..+++++.|..
T Consensus 81 ~~~~~l~~~~~r~~~~~~l~v~R~~ 105 (109)
T 1wi4_A 81 EAKSIITRAKLRSESPWEIAFIRSG 105 (109)
T ss_dssp HHHHHHHHSCCSSSSCEEEEEECCC
T ss_pred HHHHHHHccccCCCceEEEEEEeCC
Confidence 99999998 5 688999888743
No 37
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.44 E-value=9.9e-13 Score=105.46 Aligned_cols=90 Identities=28% Similarity=0.456 Sum_probs=73.8
Q ss_pred CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCC
Q psy2827 4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s 81 (373)
..+..+++|++.|.+ .+|||++.++.+. ..+++|..|.++|||+++ ||++||+|++|||.++.+++
T Consensus 5 ~~~~~~~~v~l~~~~~~~lG~~l~~g~~~------------~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~ 72 (103)
T 2dc2_A 5 QGVGPIRKVLLLKEDHEGLGISITGGKEH------------GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72 (103)
T ss_dssp ----CEEEEEEECCSSSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSC
T ss_pred CCCCCcEEEEEEeCCCCccCEEEEeccCC------------CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC
Confidence 456678999999876 6899999987432 123589999999999995 99999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+.++..+++..+..++|++.+...
T Consensus 73 ~~~~~~~l~~~~~~v~l~v~~~~~ 96 (103)
T 2dc2_A 73 HKEAVTILSQQRGEIEFEVVYVAL 96 (103)
T ss_dssp HHHHHHHHHHCCSEEEEEEEECC-
T ss_pred HHHHHHHHHhCCCcEEEEEEecCC
Confidence 999999999987899999987543
No 38
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.43 E-value=1.5e-12 Score=100.38 Aligned_cols=81 Identities=32% Similarity=0.523 Sum_probs=69.6
Q ss_pred EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
.++++.|+..+|||++.++... .++++|..|.++|||+++| |++||+|++|||+++.++++.++.++
T Consensus 2 ~~v~l~k~~~g~G~~i~~~~~~------------~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~ 69 (85)
T 2i04_A 2 IHTKLRKSSRGFGFTVVGGDEP------------DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 69 (85)
T ss_dssp EEEEEECBTTBSSEEEEECCST------------TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEECCCCCCEEEEcccCC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4688999999999999885321 2345899999999999999 99999999999999998889999999
Q ss_pred HHhC--CCeEEEEEEe
Q psy2827 89 IKSG--GDVLSLTVIS 102 (373)
Q Consensus 89 i~~~--g~~v~l~V~r 102 (373)
++.. ++.+.++|.|
T Consensus 70 l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 70 FQSIPIGASVDLELCR 85 (85)
T ss_dssp HHTSCTTCEEEEEEEC
T ss_pred HHhCCCCCeEEEEEEC
Confidence 9873 8889988864
No 39
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.43 E-value=9.2e-13 Score=104.41 Aligned_cols=86 Identities=35% Similarity=0.533 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
....+|.+++.|+..+|||++.+... .++++|..|.++|||+++||++||+|++|||+++.++++.+
T Consensus 6 ~~~~~~~~~l~~~~~g~G~~~~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 72 (98)
T 2jxo_A 6 TMLRPRLCTMKKGPSGYGFNLHSDKS-------------KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72 (98)
T ss_dssp CSSCCEEEEEECTTTCCCEEEECCCS-------------SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred ccCCcEEEEEEeCCCcccEEEEecCC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 45678999999999999999987632 23458999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCCeEEEEEEec
Q psy2827 85 VVELIKS-GGDVLSLTVISV 103 (373)
Q Consensus 85 ~~~~i~~-~g~~v~l~V~r~ 103 (373)
+..+++. .+..+.++|.|.
T Consensus 73 ~~~~l~~~~~~~~~l~v~R~ 92 (98)
T 2jxo_A 73 VVSAIRAGGDETKLLVVDRE 92 (98)
T ss_dssp HHHHHHTTTTEEEEEECCHH
T ss_pred HHHHHHhCCCcEEEEEEECC
Confidence 9999998 456666777653
No 40
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.43 E-value=1.5e-12 Score=101.05 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=70.7
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+.+|++ +++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||.++.++++.++..
T Consensus 3 ~~~~v~l-~~~~~~G~~l~~g~~~------------~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~ 69 (88)
T 2uzc_A 3 SNYSVSL-VGPAPWGFRLQGGKDF------------NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQN 69 (88)
T ss_dssp CEEEEEE-ESSSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred cEEEEEE-cCCCcccEEEECcCCC------------CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 3567888 6778999999986432 12358999999999999999999999999999999988899999
Q ss_pred HHHhCCCeEEEEEEec
Q psy2827 88 LIKSGGDVLSLTVISV 103 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r~ 103 (373)
.++..++.+.++|.|.
T Consensus 70 ~~~~~g~~v~l~v~R~ 85 (88)
T 2uzc_A 70 KIKGCTGSLNMTLQRE 85 (88)
T ss_dssp HHHTCCSEEEEEEECC
T ss_pred HHHhCCCeEEEEEEeC
Confidence 9988889999999874
No 41
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.43 E-value=1.7e-12 Score=105.61 Aligned_cols=87 Identities=31% Similarity=0.484 Sum_probs=74.5
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
.+..+++|++.|+..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus 21 ~~~~~~~v~l~~~~~glG~~l~~~~~~------------~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~ 88 (112)
T 2r4h_A 21 QSMDFYTVELERGAKGFGFSLRGGREY------------NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS 88 (112)
T ss_dssp --CCEEEEEEECBTTBTSEEEEECGGG------------TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHH
T ss_pred CCCceEEEEEEcCCCccCEEEeccccC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 345678999999999999999876321 2345899999999999999 999999999999999998899
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++..+..+.++|.|.
T Consensus 89 ~~~~~l~~~g~~v~l~v~R~ 108 (112)
T 2r4h_A 89 RAIELIKNGGRRVRLFLKRG 108 (112)
T ss_dssp HHHHHHHTTTTEEEEEEECC
T ss_pred HHHHHHHcCCCeEEEEEEeC
Confidence 99999988888999999763
No 42
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.42 E-value=1.9e-12 Score=101.68 Aligned_cols=83 Identities=19% Similarity=0.442 Sum_probs=72.2
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..|+|++.|++.+|||++.+... ..+++|..|.++|||+++| |++||+|++|||.++.+.+|+++.
T Consensus 4 ~~r~v~l~k~~~~lG~~i~~~~~-------------~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~ 70 (93)
T 3o46_A 4 SVKIIRLVKNREPLGATIKKDEQ-------------TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEII 70 (93)
T ss_dssp CCEEEEEEESSSCCCEEEEECTT-------------TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHH
T ss_pred cEEEEEEEeCCCCccEEEEecCC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 46899999999999999987521 2345899999999999999 999999999999999888899999
Q ss_pred HHHHhCCCeEEEEEEec
Q psy2827 87 ELIKSGGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~ 103 (373)
.+++..+..++++|.+.
T Consensus 71 ~~l~~~~~~v~l~v~~~ 87 (93)
T 3o46_A 71 QILAQSQGAITFKIIPG 87 (93)
T ss_dssp HHHHHCCEEEEEEEECC
T ss_pred HHHHhCCCeEEEEEEeC
Confidence 99998766899988763
No 43
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=104.16 Aligned_cols=92 Identities=32% Similarity=0.521 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
++....++++++.|+..+|||++.+..+..+ ..+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 6 ~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~----------~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~ 75 (104)
T 2djt_A 6 SGQASGHFSVELVRGYAGFGLTLGGGRDVAG----------DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT 75 (104)
T ss_dssp CCSCCCCEEEEEECCSSSCCEEEECCEETTE----------ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCC
T ss_pred CCCCCceEEEEEEeCCCCccEEEEeccCCCC----------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 4556678999999999999999988643210 1234899999999999999 9999999999999999988
Q ss_pred HHHHHHHHHhCCCeEEEEEEecC
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+.++...++..+..+.|+|.|..
T Consensus 76 ~~~~~~~~~~~g~~v~l~v~R~g 98 (104)
T 2djt_A 76 HAQAVERIRAGGPQLHLVIRRPL 98 (104)
T ss_dssp HHHHHHHHHHTCSEEEEEECCCC
T ss_pred HHHHHHHHHcCCCeEEEEEEECC
Confidence 99999999888899999997743
No 44
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=105.46 Aligned_cols=81 Identities=41% Similarity=0.691 Sum_probs=71.0
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
+++|+|+|.|+..+|||++.+. .+ ++|..|.++|||+++||++||+|++|||+++.++++.++.
T Consensus 1 ~~~r~v~l~~~~~g~G~~~~~~---------------~~-~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~ 64 (83)
T 2kv8_A 1 PRVRSVEVARGRAGYGFTLSGQ---------------AP-CVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVV 64 (83)
T ss_dssp CCEEEEEECCCSSCCSCBCCCS---------------SS-CBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCcEEEEEEeCCCcccEEEEcC---------------CC-eEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 4789999999999999988664 12 3689999999999999999999999999999998889999
Q ss_pred HHHHhCCCeEEEEEEec
Q psy2827 87 ELIKSGGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~ 103 (373)
..++..++.+.++|.|.
T Consensus 65 ~~l~~~~~~v~l~v~R~ 81 (83)
T 2kv8_A 65 KLIGKCSGVLHMVIAEG 81 (83)
T ss_dssp HHHTTCSSCEEEEEECC
T ss_pred HHHHhCCCeEEEEEEcC
Confidence 99987777899998763
No 45
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.42 E-value=1.7e-12 Score=106.63 Aligned_cols=91 Identities=32% Similarity=0.500 Sum_probs=76.4
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
...++|++.|++.+|||++.++.+.+.. +...+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus 23 ~~~~~v~l~k~~~glG~~i~gg~~~~~~-------~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~ 95 (117)
T 2byg_A 23 MTVVEIKLFKGPKGLGFSIAGGVGNQHI-------PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA 95 (117)
T ss_dssp EEEEEEEEECBTTBSSEEEEECTTSCSB-------TTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred CceEEEEEEeCCCCcCEEEEcccCCCCc-------cCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 3567899999999999999987542210 112356899999999999999 99999999999999998889999
Q ss_pred HHHHHhCCCeEEEEEEecC
Q psy2827 86 VELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~ 104 (373)
...++..+..+.|+|.|..
T Consensus 96 ~~~l~~~g~~v~l~v~R~~ 114 (117)
T 2byg_A 96 VAILKNTSEVVYLKVGKPT 114 (117)
T ss_dssp HHHHHTCCSEEEEEEEEEE
T ss_pred HHHHHcCCCeEEEEEEeCC
Confidence 9999988899999998743
No 46
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.42 E-value=2.1e-12 Score=102.20 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=74.6
Q ss_pred CcEEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.+++|+|.| +..+|||++.++.+.+.. .+...+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus 5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~------~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~ 78 (98)
T 1ihj_A 5 LIHMVTLDKTGKKSFGICIVRGEVKDSP------NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78 (98)
T ss_dssp EEEEEEEECTTSSSCCEEEEEEEECCSS------SCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHH
T ss_pred eEEEEEEEeCCCCCcCEEEeccccCCcc------ccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 468899999 567999999887542210 0112356899999999999999 99999999999999999888999
Q ss_pred HHHHHhCCCeEEEEEEec
Q psy2827 86 VELIKSGGDVLSLTVISV 103 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~ 103 (373)
..+++..++.+.++|.|.
T Consensus 79 ~~~l~~~g~~v~l~v~R~ 96 (98)
T 1ihj_A 79 IDLIKEADFKIELEIQTF 96 (98)
T ss_dssp HHHHHHSCSEEEEEEEEC
T ss_pred HHHHhcCCCeEEEEEEeC
Confidence 999988899999999874
No 47
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.42 E-value=2e-12 Score=103.81 Aligned_cols=85 Identities=33% Similarity=0.536 Sum_probs=74.3
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
+..||+|+|.|++ .+|||++.++... ..+++|..|.++|||+++||++||+|++|||+++.++++++
T Consensus 13 ~~~~~~v~l~k~~~~~lG~~~~~~~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 80 (104)
T 1wi2_A 13 QFLPRIVTLKKPPGAQLGFNIRGGKAS------------QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSK 80 (104)
T ss_dssp SSCCEEEEECCCTTCCCSEEEECCSSS------------CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHH
T ss_pred CCCCEEEEEEeCCCCCccEEEEcccCC------------CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 4578999999997 7899999886321 13458999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEec
Q psy2827 85 VVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~ 103 (373)
+..+++. ++.+.++|.|.
T Consensus 81 ~~~~l~~-~~~v~l~v~r~ 98 (104)
T 1wi2_A 81 AVEILKT-AREISMRVRFF 98 (104)
T ss_dssp HHHHHHH-SSSEEEEEECC
T ss_pred HHHHHhC-CCEEEEEEEEC
Confidence 9999998 78899999874
No 48
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=102.60 Aligned_cols=87 Identities=30% Similarity=0.336 Sum_probs=73.1
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
.+...+++|++ +++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||+++.++++.
T Consensus 4 ~s~~~~~~v~l-~~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 70 (94)
T 2eeg_A 4 GSSGMPHSVTL-RGPSPWGFRLVGGRDF------------SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHL 70 (94)
T ss_dssp CCCCCCEEEEE-CCSSCCSCCEECCTTT------------TSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHH
T ss_pred CCcCceEEEEE-eCCCccCEEEECccCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 44556788998 5567999999986432 1234799999999999999999999999999999998889
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++..++.+.++|.|.
T Consensus 71 ~~~~~~~~~g~~v~l~v~R~ 90 (94)
T 2eeg_A 71 EAQNRIKGCHDHLTLSVSSG 90 (94)
T ss_dssp HHHHHHHTCCSCEEEEEECC
T ss_pred HHHHHHHcCCCeEEEEEEeC
Confidence 99988888888899999874
No 49
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.41 E-value=9.6e-13 Score=105.78 Aligned_cols=96 Identities=29% Similarity=0.485 Sum_probs=78.8
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
++.+....+++|.|+..+|||++.++.+.+.. ....++++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 2 s~~~~~~~~v~l~~~~~glG~~l~~g~~~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~ 75 (105)
T 1wha_A 2 SSGSSGRHVACLARSERGLGFSIAGGKGSTPY------RAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75 (105)
T ss_dssp CCCCCEEEEEEECCCTTCCSCEEECCTTSCCS------STTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC
T ss_pred CCCCCeeEEEEEEeCCCccCEEEEeccCCCcc------cCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 45566778899999999999999987532100 0012356899999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEecC
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+.++...++..+..+.|+|.|..
T Consensus 76 ~~~~~~~l~~~g~~v~l~v~R~~ 98 (105)
T 1wha_A 76 HDHAVSLLTAASPTIALLLEREA 98 (105)
T ss_dssp HHHHHHHHTSCCSCEEEEEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEEECC
Confidence 99999999888889999998853
No 50
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.41 E-value=1.6e-12 Score=104.52 Aligned_cols=84 Identities=36% Similarity=0.627 Sum_probs=73.7
Q ss_pred CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
+||+|+|.|.+ .+|||.+..... ..+++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus 1 g~r~v~l~~~~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~ 67 (106)
T 3ngh_A 1 GPRESKLSKQEGQNYGFFLRIEKD-------------TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVV 67 (106)
T ss_dssp CCEEEEEECCTTCCCCCEEECCTT-------------CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHH
T ss_pred CCEEEEEEeCCCCeeCEEEEEEeC-------------CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 47999999998 679999987632 2345799999999999999999999999999999998899999
Q ss_pred HHHHhCCCeEEEEEEecC
Q psy2827 87 ELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~ 104 (373)
..++..++.+.++|.|..
T Consensus 68 ~~l~~~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 68 ELVRKSGNSVTLLVLDGD 85 (106)
T ss_dssp HHHHHTTTEEEEEEECHH
T ss_pred HHHHhCCCEEEEEEEECC
Confidence 999888899999998753
No 51
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-12 Score=106.99 Aligned_cols=93 Identities=23% Similarity=0.396 Sum_probs=79.5
Q ss_pred CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
+...+...++|+|.|+..+|||++.++.+.+ ..+++|..|.++|||+++| |++||+|++|||+++.+.
T Consensus 19 ~~~~~~~~~~v~l~k~~~glG~~l~~~~~~~-----------~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~ 87 (124)
T 2daz_A 19 YADLPGELHIIELEKDKNGLGLSLAGNKDRS-----------RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR 87 (124)
T ss_dssp STTSSSEEEEEEEECCSSCCCEEEECBSSTT-----------SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTS
T ss_pred hccCCCceEEEEEEeCCCccCEEEeccCCCC-----------cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 3455677889999999999999999874321 2356899999999999999 999999999999999998
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
++.++...++..+..+.|+|.|...
T Consensus 88 ~~~~~~~~~~~~~~~v~l~v~R~~~ 112 (124)
T 2daz_A 88 SHQNASAIIKTAPSKVKLVFIRNED 112 (124)
T ss_dssp CHHHHHHHHHHSCSEEEEEEEECTT
T ss_pred CHHHHHHHHHcCCCeEEEEEEeCCC
Confidence 9999999998877899999988644
No 52
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=2e-12 Score=106.14 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCCCCcEEEEEEcCC-------CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCE
Q psy2827 4 TQQTGPREVQIAKSD-------TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNV 75 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~-------~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~ 75 (373)
..+...+.+++.|+. .+|||++.++.+.+. ....++++|..|.++|||+++| |++||+|++|||+
T Consensus 8 ~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~-------~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~ 80 (117)
T 1ujd_A 8 HYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPG-------HSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI 80 (117)
T ss_dssp CCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSS-------SSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTE
T ss_pred CCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCc-------ccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCE
Confidence 345677889999987 689999998754221 0112356899999999999999 9999999999999
Q ss_pred EcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 76 NVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 76 ~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++.+++|.++..+++..+..+.|+|.|..
T Consensus 81 ~v~~~~~~~~~~~l~~~~~~v~l~v~R~~ 109 (117)
T 1ujd_A 81 PLTSKTYEEVQSIISQQSGEAEICVRLDL 109 (117)
T ss_dssp ECTTCCHHHHHHHHSCCSSCEEEEEESSC
T ss_pred EcCCCCHHHHHHHHhcCCCEEEEEEEECC
Confidence 99999999999999988889999998743
No 53
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=1.9e-12 Score=104.41 Aligned_cols=90 Identities=23% Similarity=0.410 Sum_probs=75.2
Q ss_pred CCcEEEEEEcCCCCccEEEEe---cccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRG---QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g---~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
...++|+|.|+..+|||++.+ +.+.+ ....+++|..|.++|||+++| |++||+|++|||+++.++++
T Consensus 8 ~~~~~v~l~k~~~glG~~i~~~~~g~~~~---------~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~ 78 (107)
T 1wf8_A 8 LELFPVELEKDEDGLGISIIGMGVGADAG---------LEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78 (107)
T ss_dssp EEEEEEEEECBTTBSCEEEEEEEESCCTT---------CCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCH
T ss_pred ceEEEEEEEECCCcccEEEEecCCCCCCC---------CCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 345778889999999999998 22110 012356899999999999999 99999999999999998889
Q ss_pred HHHHHHHHhCCCeEEEEEEecCc
Q psy2827 83 KQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++..+++..+..+.|+|.|..+
T Consensus 79 ~~~~~~~~~~~~~v~l~v~R~~~ 101 (107)
T 1wf8_A 79 NFAATVLRNTKGNVRFVIGREKP 101 (107)
T ss_dssp HHHHHHHHHCCSEEEEEEEEECC
T ss_pred HHHHHHHhcCCCeEEEEEEeCCC
Confidence 99999999888999999998654
No 54
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.40 E-value=5.2e-12 Score=99.42 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=72.4
Q ss_pred cEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 9 PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 9 ~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
..+|+|.|.. .+|||++.+..+ .++++|..|.++|||+++| |++||+|++|||.++.+.++.++
T Consensus 4 ~~~v~l~k~~~~~~lG~~~~~~~~-------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 70 (95)
T 2vwr_A 4 ILQVALHKRDSGEQLGIKLVRRTD-------------EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELA 70 (95)
T ss_dssp EEEEEEECSSTTCCCCEEEEECSS-------------SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEECCCCCcccEEEEeccC-------------CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 5679999864 579999987632 2456899999999999999 99999999999999999889999
Q ss_pred HHHHHhCCCeEEEEEEecC
Q psy2827 86 VELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~ 104 (373)
...++..+..+.+++.|..
T Consensus 71 ~~~~~~~g~~v~l~v~R~~ 89 (95)
T 2vwr_A 71 AQIIQASGERVNLTIARPG 89 (95)
T ss_dssp HHHHHHCCSEEEEEEEEES
T ss_pred HHHHHcCCCEEEEEEEcCC
Confidence 9999888999999998854
No 55
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=6.8e-13 Score=106.34 Aligned_cols=88 Identities=27% Similarity=0.506 Sum_probs=74.7
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
....+++++|.|+..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus 6 ~~~~~~~v~l~~~~~g~G~~i~~g~~~------------~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~ 73 (103)
T 1uep_A 6 SGYKELDVHLRRMESGFGFRILGGDEP------------GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHR 73 (103)
T ss_dssp SSEEEECCEEESSSSSCCEEECCCCST------------TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHH
T ss_pred CCceEEEEEEEeCCCccCEEEeeecCC------------CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHH
Confidence 344667789999989999999876321 1234799999999999999 999999999999999888899
Q ss_pred HHHHHHHhC--CCeEEEEEEecC
Q psy2827 84 QVVELIKSG--GDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~~--g~~v~l~V~r~~ 104 (373)
++..+++.. +..+.|+|.|..
T Consensus 74 ~~~~~l~~~~~g~~v~l~v~R~~ 96 (103)
T 1uep_A 74 YVIDLMHHAARNGQVNLTVRRKV 96 (103)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHhCCCCCcEEEEEEeCC
Confidence 999999884 899999998854
No 56
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.40 E-value=7.8e-12 Score=103.44 Aligned_cols=88 Identities=32% Similarity=0.500 Sum_probs=75.1
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
....++|++.|+..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus 17 ~~~~~~v~l~~~~~glG~~~~~g~~~------------~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 84 (123)
T 1ueq_A 17 KGTFLSTTLKKSNMGFGFTIIGGDEP------------DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84 (123)
T ss_dssp CSEEEEEEEECCTTSCSEEEECCSSS------------SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHH
T ss_pred CCcEEEEEEEeCCCceeEEEecccCC------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 33556789999999999999976321 1235899999999999999 9999999999999999888999
Q ss_pred HHHHHHh--CCCeEEEEEEecCc
Q psy2827 85 VVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
+..+++. .++.+.|+|.|..+
T Consensus 85 ~~~~l~~~~~g~~v~l~v~R~~~ 107 (123)
T 1ueq_A 85 VVKLFQSVPIGQSVNLVLCRGYP 107 (123)
T ss_dssp HHHHHHTSCTTCEEEEEEEESCC
T ss_pred HHHHHHhCCCCCeEEEEEEeCCC
Confidence 9999998 48999999998654
No 57
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.40 E-value=3.7e-12 Score=99.60 Aligned_cols=84 Identities=29% Similarity=0.480 Sum_probs=72.2
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
...++|+|.|.+ .+|||++.+..+ ..+++|..|.++|||+++| |++||+|++|||+++.+.++.+
T Consensus 3 ~~~~~v~l~k~~~~~lG~~~~~~~~-------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 69 (92)
T 2qg1_A 3 SDTLTIGLQKKPGKGLGLSIVGKRN-------------DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEA 69 (92)
T ss_dssp -CEEEEEEECCTTSCCSEEEECCSS-------------SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHH
T ss_pred ceEEEEEEEeCCCCcccEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 356889999875 789999987632 1345899999999999999 9999999999999999988999
Q ss_pred HHHHHHhCCCeEEEEEEec
Q psy2827 85 VVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~ 103 (373)
+...++..+..+.++|.|.
T Consensus 70 ~~~~~~~~~~~v~l~v~R~ 88 (92)
T 2qg1_A 70 VAALLKCSLGTVTLEVGRI 88 (92)
T ss_dssp HHHHHHHCCSEEEEEEECC
T ss_pred HHHHHHcCCCeEEEEEEcc
Confidence 9999988888999999874
No 58
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.40 E-value=3.9e-12 Score=102.27 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=73.7
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
+....+|++ |+..+|||++.++.... ....+++|..|.++|||+++| |++||+|++|||+++.+.++.+
T Consensus 9 ~~~~~~v~l-~~~~glG~~i~~~~~~~---------~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~ 78 (106)
T 3axa_A 9 EPEIITVTL-KKQNGMGLSIVAAKGAG---------QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER 78 (106)
T ss_dssp -CCEEEEEE-ECSSSCSEEEEEEECSS---------CSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CceEEEEEE-CCCCccCEEEEeecCCC---------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 345566777 88889999998764321 112356899999999999999 9999999999999999888999
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+...++..++.+.++|.|...
T Consensus 79 ~~~~~~~~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 79 AAELMTRTSSVVTLEVAKQGA 99 (106)
T ss_dssp HHHHHHTCCSEEEEEEECCCS
T ss_pred HHHHHHcCCCeEEEEEEeCCc
Confidence 999998889999999987543
No 59
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.39 E-value=5.1e-12 Score=99.95 Aligned_cols=86 Identities=24% Similarity=0.444 Sum_probs=73.1
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
...++|++.|...+|||++.+..+. ..+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus 4 ~~~~~v~l~~~~~~lG~~i~~~~~~------------~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~ 71 (97)
T 1n7e_A 4 AIIYTVELKRYGGPLGITISGTEEP------------FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 71 (97)
T ss_dssp CCEEEEEEECTTSCCCEEEECCSST------------TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHH
T ss_pred ceEEEEEEEeCCCCcCEEEEcccCC------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 4557889988888899999876321 1234799999999999999 99999999999999998889999
Q ss_pred HHHHHhCCCeEEEEEEecC
Q psy2827 86 VELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~ 104 (373)
..+++..++.+.++|.|..
T Consensus 72 ~~~l~~~g~~v~l~v~R~~ 90 (97)
T 1n7e_A 72 IHLLQMAGETVTLKIKKQT 90 (97)
T ss_dssp HHHHHTCCSEEEEEEECCC
T ss_pred HHHHHcCCCeEEEEEEeCC
Confidence 9999887899999998743
No 60
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.39 E-value=2.7e-12 Score=99.98 Aligned_cols=82 Identities=18% Similarity=0.347 Sum_probs=69.5
Q ss_pred CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
+.|.|+|.|++ .++||++.+... .+++|..|.++|||++ +||++||+|++|||+++.+++|+++
T Consensus 1 ~~r~V~l~K~~~~~lG~~i~~~~~--------------~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~ 66 (88)
T 1kwa_A 1 RSRLVQFQKNTDEPMGITLKMNEL--------------NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQL 66 (88)
T ss_dssp CCEEEEEEECSSSCCCEEEECSCG--------------GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEeCCCCceeEEEEeCCC--------------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 36899999996 789999987411 1247999999999999 8899999999999999997779999
Q ss_pred HHHHHhCCCeEEEEEEec
Q psy2827 86 VELIKSGGDVLSLTVISV 103 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~ 103 (373)
.++++....+++++|.|.
T Consensus 67 ~~~l~~~~~~v~l~v~r~ 84 (88)
T 1kwa_A 67 QKMLREMRGSITFKIVPS 84 (88)
T ss_dssp HHHHHHCCEEEEEEEECC
T ss_pred HHHHhcCCCcEEEEEECC
Confidence 999998544888888763
No 61
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.7e-12 Score=105.73 Aligned_cols=93 Identities=27% Similarity=0.433 Sum_probs=77.6
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
+..+++|+|.|++.+|||++.++.+.+.. ....+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus 15 ~~~~~~v~l~r~~~~lG~~i~~~~~~~~~-------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~ 87 (120)
T 2eno_A 15 LVTEEEINLTRGPSGLGFNIVGGTDQQYV-------SNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD 87 (120)
T ss_dssp EEEEEEEEEECCSSSCSEEEECCTTTCSS-------SSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHH
T ss_pred CCceEEEEEEECCCCCCEEEecccCCccc-------cCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 34678899999999999999986432110 012356899999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+...++..++.+.|+|.|..+
T Consensus 88 ~~~~~~~~g~~v~l~v~R~~~ 108 (120)
T 2eno_A 88 AVDLFRNAGYAVSLRVQHRLQ 108 (120)
T ss_dssp HHHHHHHHCSEEEEEEEEEEE
T ss_pred HHHHHHcCCCeEEEEEEeCCc
Confidence 999998878899999988654
No 62
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.39 E-value=1.9e-12 Score=102.70 Aligned_cols=90 Identities=31% Similarity=0.481 Sum_probs=72.3
Q ss_pred EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI 89 (373)
Q Consensus 10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i 89 (373)
.++++.|++.+|||++.+.....+. ...+..+++|..|.++|||++|||++||+|++|||.++.++++.++...+
T Consensus 4 ~~v~l~~~~~~~Gf~l~~~~~~~~~-----~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l 78 (99)
T 3khf_A 4 PPIVIHSSGKKYGFSLRAIRVYMGD-----SDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELL 78 (99)
T ss_dssp CCEEEEC-CCCCCEEEEEEEEESSS-----SSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred CCEEEEeCCCCCcEEEEecccccCc-----cccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 4588899999999999876321110 01122345799999999999999999999999999999988899999999
Q ss_pred HhCCCeEEEEEEecC
Q psy2827 90 KSGGDVLSLTVISVS 104 (373)
Q Consensus 90 ~~~g~~v~l~V~r~~ 104 (373)
+..|+.+.+++.|..
T Consensus 79 ~~~g~~v~l~v~r~~ 93 (99)
T 3khf_A 79 LKSGNKISLRTTALE 93 (99)
T ss_dssp HHSCSEEEEEEECSC
T ss_pred hcCCCEEEEEEEECC
Confidence 988999999998743
No 63
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.39 E-value=4.6e-12 Score=104.02 Aligned_cols=88 Identities=34% Similarity=0.591 Sum_probs=76.5
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
..++.+++|+|.|+..+|||++.+..+ ..+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus 10 ~~~~~~~~v~l~k~~~glG~~l~~~~~-------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~ 76 (119)
T 1tp5_A 10 DIPREPRRIVIHRGSTGLGFNIVGGED-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH 76 (119)
T ss_dssp CCCCSCEEEEEECTTSCCCEEEEECGG-------------GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred CCCCccEEEEEEECCCCccEEEecCCC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 457789999999999999999988632 1346899999999999999 99999999999999999888
Q ss_pred HHHHHHHHhCCCeEEEEEEecC
Q psy2827 83 KQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.+....++..++.+.+++.|..
T Consensus 77 ~~~~~~~~~~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 77 EQAAIALKNAGQTVTIIAQYKP 98 (119)
T ss_dssp HHHHHHHHTSCSEEEEEEEECH
T ss_pred HHHHHHHHcCCCeEEEEEEECC
Confidence 8888888888899999998743
No 64
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.39 E-value=1.1e-12 Score=109.72 Aligned_cols=92 Identities=20% Similarity=0.324 Sum_probs=76.0
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~~ 83 (373)
.+...++|+|.|+..||||+|.++.+.+. ...+++|..|.+++||+++ ||++||+|++|||+++.+++|+
T Consensus 26 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~---------~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~ 96 (130)
T 1i16_A 26 AEATVCTVTLEKMSAGLGFSLEGGKGSLH---------GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRF 96 (130)
T ss_dssp SSEEEEEEEEETTSSSTTEEEECCCCCSS---------SCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHH
T ss_pred CCCcEEEEEEEcCCCccCEEEecCcCCCC---------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 34466789999999999999998754210 0123489999999999999 8999999999999999999999
Q ss_pred HHHHHHHhC-CCeEEEEEEecCc
Q psy2827 84 QVVELIKSG-GDVLSLTVISVSP 105 (373)
Q Consensus 84 ~~~~~i~~~-g~~v~l~V~r~~~ 105 (373)
++..+++.. +..+.++|.|...
T Consensus 97 ~~~~~l~~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 97 EAWNIIKALPDGPVTIVIRRKSL 119 (130)
T ss_dssp HHHHHHHTSCSSEEEEEEEEESS
T ss_pred HHHHHHHhCCCceEEEEEEeCCC
Confidence 999999984 6679999987543
No 65
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.39 E-value=2.2e-12 Score=104.11 Aligned_cols=92 Identities=42% Similarity=0.563 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEEcCCCCccEEEE-----ecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEc
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVR-----GQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNV 77 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~-----g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v 77 (373)
..+...++|+|.|++.+|||++. ++.+... ...+++|..|.++|||+++| |++||+|++|||+++
T Consensus 5 ~~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v 75 (108)
T 1q7x_A 5 PKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSV---------RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL 75 (108)
T ss_dssp CCSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTS---------SSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEEC
T ss_pred CCCCcEEEEEEEECCCCccEEEEEeccCCCccccC---------CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEEC
Confidence 34566789999999999999998 5432210 12345899999999999999 999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 78 EGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 78 ~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.++++.++...++..++.+.++|.|..
T Consensus 76 ~~~~~~~~~~~~~~~g~~v~l~v~R~~ 102 (108)
T 1q7x_A 76 EGATHKQAVETLRNTGQVVHLLLEKGQ 102 (108)
T ss_dssp BSCTTSHHHHHHHHTTSEEEEEEECCC
T ss_pred CCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 988899999999988899999998754
No 66
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.39 E-value=1.8e-12 Score=99.83 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=68.3
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
+.+|++ +++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||+++.++++.++...
T Consensus 2 ~~~v~l-~~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~ 68 (85)
T 1rgw_A 2 AYSVTL-TGPGPWGFRLQGGKDF------------NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNK 68 (85)
T ss_dssp EEEEEE-CCSSCCCEEECCCGGG------------TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHH
T ss_pred cEEEEE-eCCCccCEEEEeccCC------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHH
Confidence 456788 4667899999876432 123479999999999999999999999999999999888999998
Q ss_pred HHhCCCeEEEEEEec
Q psy2827 89 IKSGGDVLSLTVISV 103 (373)
Q Consensus 89 i~~~g~~v~l~V~r~ 103 (373)
++..++.+.++|.|.
T Consensus 69 ~~~~~~~v~l~v~R~ 83 (85)
T 1rgw_A 69 IKSASYNLSLTLQKS 83 (85)
T ss_dssp HTTCSSCEEEEEESC
T ss_pred HHcCCCeEEEEEEeC
Confidence 887777799998763
No 67
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.38 E-value=2.8e-12 Score=102.62 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=73.6
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
++....+|++. ++.+|||++.++.+.. .+++|..|.++|||++|||++||+|++|||+++.++++.+
T Consensus 2 ~~g~~~~v~l~-~~~~~G~~l~gg~~~~------------~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 68 (103)
T 1wf7_A 2 SSGSSGSVSLV-GPAPWGFRLQGGKDFN------------MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE 68 (103)
T ss_dssp CCCCCEEEEEE-SSSCCSCCEEEETTTT------------EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHH
T ss_pred CCCCEEEEEEe-CCCccCEEEeccccCC------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 35567888887 5688999999874321 1247999999999999999999999999999999988899
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+...++..++.+.++|.|...
T Consensus 69 ~~~~~~~~g~~v~l~v~R~g~ 89 (103)
T 1wf7_A 69 AQNKIKACTGSLNMTLQRASA 89 (103)
T ss_dssp HHHHHHHCSSEEEEEECCCSC
T ss_pred HHHHHHcCCCeEEEEEEeCCC
Confidence 999888888899999987544
No 68
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.38 E-value=4.3e-12 Score=98.71 Aligned_cols=83 Identities=25% Similarity=0.398 Sum_probs=69.2
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
+.++++. ++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||+++.++++.++...
T Consensus 4 ~~~v~~~-~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 70 (89)
T 2q3g_A 4 SFKVVLE-GPAPWGFRLQGGKDF------------NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNK 70 (89)
T ss_dssp EEEEEEE-SSSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHH
T ss_pred EEEEEEc-CCCcccEEEECcCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4556665 457899999886431 123479999999999999999999999999999998889999999
Q ss_pred HHhCCCeEEEEEEecC
Q psy2827 89 IKSGGDVLSLTVISVS 104 (373)
Q Consensus 89 i~~~g~~v~l~V~r~~ 104 (373)
++..++.+.++|.|..
T Consensus 71 ~~~~g~~v~l~v~R~~ 86 (89)
T 2q3g_A 71 IRACGERLSLGLSRAI 86 (89)
T ss_dssp HHTCTTEEEEEEEEEC
T ss_pred HHhCCCEEEEEEEeCC
Confidence 9888889999998754
No 69
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.38 E-value=4.3e-12 Score=98.24 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=67.8
Q ss_pred EEEEE-cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827 11 EVQIA-KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI 89 (373)
Q Consensus 11 ~v~l~-r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i 89 (373)
++++. +++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||+++.+++++++..++
T Consensus 3 ~~~v~~~~~~~lG~~l~~~~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l 70 (87)
T 2pa1_A 3 ALTVDVAGPAPWGFRITGGRDF------------HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI 70 (87)
T ss_dssp EEEEEECSSSCCSEEEEEEGGG------------TEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHH
T ss_pred EEEEEECCCCccCEEEecccCC------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence 34444 4457899999987432 2245899999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEEEec
Q psy2827 90 KSGGDVLSLTVISV 103 (373)
Q Consensus 90 ~~~g~~v~l~V~r~ 103 (373)
+..++.+.++|.|.
T Consensus 71 ~~~~~~v~l~v~R~ 84 (87)
T 2pa1_A 71 RQSPSPLRLQLDRI 84 (87)
T ss_dssp HTCCSSEEEEEEEC
T ss_pred HcCCCeEEEEEEec
Confidence 98668999999874
No 70
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.38 E-value=5.5e-12 Score=104.57 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=74.0
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
..++++++.|+. .+|||++.++... .++++|..|.++|||+++| |++||+|++|||.++.+++|.+
T Consensus 18 ~~~~~v~l~k~~~~~lG~~i~gg~~~------------~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~ 85 (125)
T 3hpk_A 18 TVPGKVTLQKDAQNLIGISIGGGAQY------------CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVE 85 (125)
T ss_dssp EEEEEEEEECCTTSCCCEEEEECSSC------------CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCeEEEEEeCCCCCcCEEEeccCCC------------CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence 357889999986 5799999987421 2456899999999999999 9999999999999999888999
Q ss_pred HHHHHHhCCCeEEEEEEecC
Q psy2827 85 VVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~ 104 (373)
+...++..+..++++|.|..
T Consensus 86 ~~~~l~~~~~~v~l~v~r~~ 105 (125)
T 3hpk_A 86 VAKMIQEVKGEVTIHYNKLQ 105 (125)
T ss_dssp HHHHHHHSCSEEEEEEEEEC
T ss_pred HHHHHHcCCCeEEEEEEECC
Confidence 99999997778999998743
No 71
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.37 E-value=4.4e-12 Score=105.87 Aligned_cols=88 Identities=31% Similarity=0.474 Sum_probs=74.9
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
.....+|+|.|++.+|||++.++... ..+++|..|.++|||+++| |++||+|++|||+++.+++|.+
T Consensus 16 ~g~~~~v~l~~~~~g~G~~i~g~~~~------------~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~ 83 (129)
T 2kpk_A 16 KGKFIHTKLRKSSRGFGFTVVGGDEP------------DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQ 83 (129)
T ss_dssp CSEEEEEEEEECSSCCSEEEEEEEET------------TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHH
T ss_pred CCcEEEEEEEECCCcccEEEeCccCC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 34556789999999999999986321 1245899999999999999 9999999999999999888999
Q ss_pred HHHHHHhC--CCeEEEEEEecCc
Q psy2827 85 VVELIKSG--GDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~--g~~v~l~V~r~~~ 105 (373)
+..+++.. ++.+.|+|.|..+
T Consensus 84 ~~~~l~~~~~g~~v~l~v~R~~~ 106 (129)
T 2kpk_A 84 VVKIFQSIPIGASVDLELCRGYP 106 (129)
T ss_dssp HHHHHHHSCTTEEEEEEEEECSC
T ss_pred HHHHHHhCCCCCeEEEEEEeCCC
Confidence 99999984 8899999998643
No 72
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.37 E-value=2.5e-12 Score=104.07 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=74.0
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
...+++|+|.|.+ .+|||++.++.+. ...++++|..|.++|||+++| |++||+|++|||+++.+++|+
T Consensus 3 ~~~~~~v~l~k~~~~~lG~~i~g~~~~----------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~ 72 (108)
T 3cbz_A 3 HMNIITVTLNMEKYNFLGISIVGQSNE----------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND 72 (108)
T ss_dssp -CCEEEEEECHHHHCCCCEEEEEECSS----------TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHH
T ss_pred CceEEEEEEEeCCCCccCEEEEcCcCC----------CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence 3478899999864 7899999986421 112456899999999999999 999999999999999999999
Q ss_pred HHHHHHHhC---CCeEEEEEEecC
Q psy2827 84 QVVELIKSG---GDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~~---g~~v~l~V~r~~ 104 (373)
++..+++.. +..+.|+|.|..
T Consensus 73 ~~~~~l~~~~~~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 73 DAVRVLRDIVHKPGPIVLTVAKSG 96 (108)
T ss_dssp HHHHHHHHHHTSSSCEEEEEECCC
T ss_pred HHHHHHHhcccCCCeEEEEEEeCC
Confidence 999999874 557999998753
No 73
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.37 E-value=4.1e-12 Score=105.77 Aligned_cols=91 Identities=23% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC-CCCH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE-GATH 82 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~-~~s~ 82 (373)
+..+++|++.|+. .+|||++.++.+... ...+++|..|.++|||+++| |++||+|++|||+++. ++++
T Consensus 23 ~~~~~~v~l~k~~~~~lG~~i~g~~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~ 93 (128)
T 2db5_A 23 GRQIEYIDIERPSTGGLGFSVVALRSQNL---------GKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH 93 (128)
T ss_dssp TCEEEEEEEECCSSSCCCCEEEEEECSSS---------SCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCH
T ss_pred cCceEEEEEEECCCCccCEEEecccCCCC---------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCH
Confidence 4567899999997 689999988643211 12356899999999999999 9999999999999997 8889
Q ss_pred HHHHHHHHhCCCeEEEEEEecCc
Q psy2827 83 KQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++..+++..+..+.|+|.|...
T Consensus 94 ~~~~~~l~~~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 94 QQAIALLQQTTGSLRLIVAREPV 116 (128)
T ss_dssp HHHHHHHHHCCSEEEEEEEECCC
T ss_pred HHHHHHHHcCCCeEEEEEEcCCC
Confidence 99999999888999999998644
No 74
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.37 E-value=2.1e-12 Score=105.82 Aligned_cols=99 Identities=26% Similarity=0.403 Sum_probs=79.9
Q ss_pred CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
..+..+++|+|.|+. .+|||++.++.+.+.. +.......+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus 11 ~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~---~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 87 (117)
T 2ehr_A 11 SHWGPPRIVEIFREPNVSLGISIVGGQTVIKR---LKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87 (117)
T ss_dssp SCBCCCEEEEECCCSSSCCCEEECCCCSCCCS---SCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCC
T ss_pred ccCCCCEEEEEEeCCCCccCEEEeCCcccccc---cccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence 456688999999995 7899999887543110 0001113466899999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+.++...++..++.+.|+|.|...
T Consensus 88 ~~~~~~~~~~~g~~v~l~v~r~~~ 111 (117)
T 2ehr_A 88 HSEAVEAIKNAGNPVVFIVQSLSS 111 (117)
T ss_dssp HHHHHHHHHTSCSSEEEEECCBSC
T ss_pred HHHHHHHHHcCCCeEEEEEEECCC
Confidence 999999999888999999987543
No 75
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.7e-13 Score=111.98 Aligned_cols=101 Identities=33% Similarity=0.491 Sum_probs=78.3
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccC-----------CCcccccccc-----ccCCceEEEEecCCCHHHHcCCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSE-----------GGQLRSINGE-----LYAPLQHVSAVLAGGAAEKAGIRKG 66 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~-----------~~~~~~~g~~-----~~~p~~~V~~V~~gspA~~aGL~~G 66 (373)
+.+++.||+|+|.|+..+|||++.+.... ...-..+++. +...+++|..|.++|||+++||++|
T Consensus 3 ~~~~~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~G 82 (126)
T 2yuy_A 3 SGSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTG 82 (126)
T ss_dssp CSCSSSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSS
T ss_pred CCCCCCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCC
Confidence 45678899999999999999999862100 0000112211 0113457999999999999999999
Q ss_pred CEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEec
Q psy2827 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 67 D~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~ 103 (373)
|+|++|||+++.+++++++..+++..+..+.|+|.|.
T Consensus 83 D~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~ 119 (126)
T 2yuy_A 83 DRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK 119 (126)
T ss_dssp CCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCC
T ss_pred CEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence 9999999999997779999999998889999998764
No 76
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.36 E-value=3.7e-12 Score=98.82 Aligned_cols=82 Identities=30% Similarity=0.473 Sum_probs=67.9
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
+..++|+|.|++.+|||++.+..+ ..+++|..+ ++|||+ +||++||+|++|||.++.+++++++.
T Consensus 2 ~~~~~v~l~k~~~g~G~~~~~~~~-------------~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~ 66 (88)
T 3bpu_A 2 MELITVHIVKGPMGFGFTIADSPG-------------GGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVV 66 (88)
T ss_dssp EEEEEEEEECBTTBSSCEEEECTT-------------SSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHH
T ss_pred CcEEEEEEEcCCCceeEEEEecCC-------------CCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHH
Confidence 356889999999999999987532 124467776 999999 99999999999999999998889999
Q ss_pred HHHHh--CCCeEEEEEEec
Q psy2827 87 ELIKS--GGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~--~g~~v~l~V~r~ 103 (373)
..+++ .++.+.++|.|.
T Consensus 67 ~~l~~~~~g~~v~l~v~R~ 85 (88)
T 3bpu_A 67 DMLVESPKGSEVTLLVQRQ 85 (88)
T ss_dssp HHHHTSCTTCEEEEEEEEE
T ss_pred HHHHhCCCCCEEEEEEEeC
Confidence 99985 588999999874
No 77
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.36 E-value=2.4e-12 Score=104.72 Aligned_cols=91 Identities=23% Similarity=0.367 Sum_probs=75.6
Q ss_pred CcEEEEEEcCCCCccEEEEec---ccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQ---VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~---~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
..++|++.|++.+|||++.+. .+.. ....+++|..|.++|||+++| |++||+|++|||.++.++++.
T Consensus 4 ~~~~v~l~k~~~glG~~l~~~~~~~~~~---------~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~ 74 (113)
T 2g5m_B 4 ELFPVELEKDSEGLGISIIGMGAGADMG---------LEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS 74 (113)
T ss_dssp EEEEEECCCCSSCCCCEEEEEECCCCSS---------SCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHH
T ss_pred EEEEEEEEeCCCCCCEEEEecCCCCcCC---------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 356788889999999999882 1110 012356899999999999999 999999999999999988899
Q ss_pred HHHHHHHhCCCeEEEEEEecCccc
Q psy2827 84 QVVELIKSGGDVLSLTVISVSPEE 107 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~~~~ 107 (373)
++...++..++.+.++|.|..+..
T Consensus 75 ~~~~~~~~~g~~v~l~v~R~~~~~ 98 (113)
T 2g5m_B 75 FAASVLRNTKGRVRFMIGRERPGE 98 (113)
T ss_dssp HHHHHHHHSCSSCEEEEEECCCCT
T ss_pred HHHHHHhcCCCeEEEEEEeCCCCC
Confidence 999999988899999999866543
No 78
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.36 E-value=8.8e-12 Score=98.08 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=72.8
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
...++.|.|.|+.++|||+|.++. ...++|+++.+||+|++.| |.+||.|++|||+++.+++|.+
T Consensus 3 ~g~~k~V~l~K~~~~LG~tI~~~g--------------~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~e 68 (95)
T 3gge_A 3 KGIEKEVNVYKSEDSLGLTITDNG--------------VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD 68 (95)
T ss_dssp CEEEEEEEEECCSSCCCEEEECSS--------------SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCeEEEEEEEECCCCceEEEEcCC--------------CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHH
Confidence 456789999999999999998641 1124799999999999999 9999999999999999999999
Q ss_pred HHHHHHh--CCCeEEEEEEec
Q psy2827 85 VVELIKS--GGDVLSLTVISV 103 (373)
Q Consensus 85 ~~~~i~~--~g~~v~l~V~r~ 103 (373)
+++++++ .|.+++|++.+.
T Consensus 69 vv~lLk~~~~g~~~~L~lv~p 89 (95)
T 3gge_A 69 VAKKLKELKKEELFTMKLIEP 89 (95)
T ss_dssp HHHHHHHSCTTCEEEEEEEEE
T ss_pred HHHHHHhCCCCCEEEEEEECc
Confidence 9999999 477888887763
No 79
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.36 E-value=9.7e-12 Score=97.07 Aligned_cols=83 Identities=27% Similarity=0.335 Sum_probs=70.0
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
++++++. ++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||.++.++++.++...
T Consensus 4 ~~~v~~~-~~~~~G~~l~~~~~~------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 70 (91)
T 2pkt_A 4 TQQIDLQ-GPGPWGFRLVGGKDF------------EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNR 70 (91)
T ss_dssp EEEEEEE-SSSCCSEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred cEEEEEC-CCCCCCEEEEccCCC------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 4566666 447899999886432 124579999999999999999999999999999999888899999
Q ss_pred HHhCCCeEEEEEEecC
Q psy2827 89 IKSGGDVLSLTVISVS 104 (373)
Q Consensus 89 i~~~g~~v~l~V~r~~ 104 (373)
++..++.+.++|.|..
T Consensus 71 l~~~g~~v~l~v~R~g 86 (91)
T 2pkt_A 71 IKGCTDNLTLTVARSE 86 (91)
T ss_dssp HHTCSSEEEEEEEEEC
T ss_pred HHcCCCeEEEEEEECC
Confidence 9988899999998854
No 80
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.36 E-value=3.9e-12 Score=104.16 Aligned_cols=91 Identities=25% Similarity=0.388 Sum_probs=76.3
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC-CCCH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE-GATH 82 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~-~~s~ 82 (373)
...+++|+|.|+. .+|||++.++..... ...+++|..|.++|||+++| |++||+|++|||.++. ++++
T Consensus 18 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~---------~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~ 88 (117)
T 2o2t_A 18 GRHVEVFELLKPPSGGLGFSVVGLRSENR---------GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88 (117)
T ss_dssp TSCEEEEEEECCSSSCSSCCEEEEECCC-----------CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCH
T ss_pred CCeEEEEEEEECCCCCCCEEEeecccCCC---------CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCH
Confidence 4678999999985 789999988743210 12356899999999999999 9999999999999998 7779
Q ss_pred HHHHHHHHhCCCeEEEEEEecCc
Q psy2827 83 KQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++..+++..++.+.++|.|...
T Consensus 89 ~~~~~~l~~~~~~v~l~v~R~~~ 111 (117)
T 2o2t_A 89 QQAISILQKAKDTVQLVIARGSL 111 (117)
T ss_dssp HHHHHHHHHCCSEEEEEEESSCC
T ss_pred HHHHHHHHcCCCEEEEEEEeCCc
Confidence 99999999888999999987543
No 81
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.36 E-value=1.2e-11 Score=100.18 Aligned_cols=94 Identities=29% Similarity=0.510 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
+++.......+++.++..+|||++.+.... .++ ..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 5 ~~~~~~~~~~~~l~~~~~glG~~~~~~~~~------~~~---~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~ 75 (111)
T 2koj_A 5 NTKKVGKRLNIQLKKGTEGLGFSITSRDVT------IGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK 75 (111)
T ss_dssp CCSSSCEEEEEEEECBTTBTCEEEEECSCS------SSS---SSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTS
T ss_pred cCcccCcEEEEEEEECCCccCEEEEeccCC------CCC---CcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCC
Confidence 456666778889999999999999976321 011 1346899999999999999 999999999999999988
Q ss_pred CHHHHHHHHHhC--CCeEEEEEEecC
Q psy2827 81 THKQVVELIKSG--GDVLSLTVISVS 104 (373)
Q Consensus 81 s~~~~~~~i~~~--g~~v~l~V~r~~ 104 (373)
++.++..+++.. +..+.++|.|..
T Consensus 76 ~~~~~~~~l~~~~~g~~v~l~v~R~~ 101 (111)
T 2koj_A 76 SQEEVVSLLRSTKMEGTVSLLVFRQE 101 (111)
T ss_dssp CHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred CHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 899999999873 889999998854
No 82
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.36 E-value=5.6e-12 Score=102.21 Aligned_cols=84 Identities=27% Similarity=0.552 Sum_probs=73.8
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.++.|++.|++.+|||++.+..+ .+++|..|.++|||+++| |++||+|++|||+++.++++.++.
T Consensus 15 ~~~~v~l~~~~~~lG~~l~~~~~--------------~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 80 (111)
T 2dlu_A 15 HVEEVELINDGSGLGFGIVGGKT--------------SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVA 80 (111)
T ss_dssp EEEEEEEECCSSCCCEEEECCSS--------------SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHH
T ss_pred ceEEEEEEeCCCccCEEEeccCC--------------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 56889999999999999987632 235899999999999999 999999999999999988899999
Q ss_pred HHHHhCCCeEEEEEEecCc
Q psy2827 87 ELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~ 105 (373)
.+++..++.+.++|.|...
T Consensus 81 ~~l~~~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 81 QVLRNCGNSVRMLVARDPA 99 (111)
T ss_dssp HHHHHHCSEEEEEEEESCT
T ss_pred HHHHhCCCeEEEEEEeCCC
Confidence 9998878899999988544
No 83
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.36 E-value=5.4e-12 Score=102.93 Aligned_cols=97 Identities=28% Similarity=0.529 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCC
Q psy2827 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~ 80 (373)
++....+++|++.|.+ .+|||++.+...... .|.....| ++|..|.++|||++ +||++||+|++|||+++.++
T Consensus 5 ~~~~~~~~~v~l~~~~~~~lGf~l~~~~~~~~----~g~~~~~~-~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~ 79 (114)
T 1uew_A 5 SSGSLQTSDVVIHRKENEGFGFVIISSLNRPE----SGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM 79 (114)
T ss_dssp CSCCCCCEEEEEECCTTSCCCEEEECCCCSCC----SSCCSCCS-CEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTS
T ss_pred CCCcccceEEEEEECCCCCCCEEEEeecccCC----CCcccccC-eEEEEECCCChHHHhCCCCCCCEEEEECCEECCCC
Confidence 3456678999999864 689999988643211 01111123 37999999999999 99999999999999999998
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+++++..+++..+..+.|+|.|..
T Consensus 80 ~~~~~~~~l~~~g~~v~l~v~r~~ 103 (114)
T 1uew_A 80 PHADIVKLIKDAGLSVTLRIIPQE 103 (114)
T ss_dssp CHHHHHHHHHHTTTEEEEEECCCS
T ss_pred CHHHHHHHHHcCCCeEEEEEEeCC
Confidence 899999999988899999998743
No 84
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.36 E-value=1e-11 Score=101.42 Aligned_cols=86 Identities=22% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCCCcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
++..+++|++.|+..+ |||++.++... .++++|..|.++|||+++| |++||+|++|||.++.+.++
T Consensus 21 q~~~~~~V~l~~~~~~~lG~~l~~~~~~------------~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~ 88 (114)
T 2gzv_A 21 QSMVPGKVTLQKDAQNLIGISIGGGAQY------------CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK 88 (114)
T ss_dssp -CCCCEEEEEECCTTSCCSEEEEECCC--------------CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred ccCCCEEEEEEECCCCcEeEEEEeCCCC------------CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence 4457899999999865 99999876321 2346899999999999999 99999999999999966679
Q ss_pred HHHHHHHHhCCCeEEEEEEe
Q psy2827 83 KQVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r 102 (373)
+++..+++..+..+.++|.+
T Consensus 89 ~~~~~~l~~~~~~v~l~v~~ 108 (114)
T 2gzv_A 89 VEVAKMIQEVKGEVTIHYNK 108 (114)
T ss_dssp HHHHHHHHHCCSEEEEEEEC
T ss_pred HHHHHHHHcCCCeEEEEEEe
Confidence 99999998866778888865
No 85
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.36 E-value=6.5e-12 Score=104.69 Aligned_cols=98 Identities=26% Similarity=0.399 Sum_probs=78.2
Q ss_pred CCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 4 TQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
..+..++.|++.|++ .+|||++.+..+. ....+|.. ..++++|..|.++|||+++| |++||+|++|||.++.+.
T Consensus 25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~--~~~~~g~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~ 101 (128)
T 1nf3_C 25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSV--RVTPHGLE-KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGK 101 (128)
T ss_dssp TSCTTCEEEEECCSSTTSCCCEEEEEEEEE--EEETTEEE-EEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTC
T ss_pred cCCCccEEEEEEECCCCCCccEEEEccccc--cccccccC-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCC
Confidence 456788999999994 6899999876431 01111211 12457899999999999999 999999999999999888
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+++++..+++..+..+.++|.|..
T Consensus 102 ~~~~~~~~l~~~~~~v~l~v~r~~ 125 (128)
T 1nf3_C 102 SLDQVTDMMIANSRNLIITVRPAN 125 (128)
T ss_dssp CHHHHHHHHHHTTTSEEEEEECCC
T ss_pred CHHHHHHHHHcCCCeEEEEEEECC
Confidence 899999999987778999998743
No 86
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.35 E-value=9.6e-12 Score=98.32 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCC
Q psy2827 2 YSTQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG 79 (373)
Q Consensus 2 ~~~~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~ 79 (373)
+++......++++.++ ..++||++.+. ..+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 2 ~~~~~~~~~~v~l~~~~~~glG~~~~~~---------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~ 66 (96)
T 2qkv_A 2 IPRNSLEKFNVDLMKKAGKELGLSLSPN---------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG 66 (96)
T ss_dssp CCCCCCCCEEEEEECBTTBCCCEEEEEC---------------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTT
T ss_pred CChHHCceEEEEEEeCCCCCccEEEEeC---------------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCC
Confidence 4566677788999764 56899998763 1245899999999999999 99999999999999998
Q ss_pred CCHHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827 80 ATHKQVVELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 80 ~s~~~~~~~i~~~g~~v~l~V~r~~~~ 106 (373)
.++.++...++..++.+.++|.|..|.
T Consensus 67 ~~~~~~~~~~~~~~~~v~l~v~R~~p~ 93 (96)
T 2qkv_A 67 LPFQVSYALFKGANGKVSMEVTRPKPA 93 (96)
T ss_dssp CCHHHHHHHHHTCSSEEEEEEECCCC-
T ss_pred CCHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence 889999999888878899999986554
No 87
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.35 E-value=7.8e-12 Score=103.91 Aligned_cols=89 Identities=34% Similarity=0.509 Sum_probs=76.6
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
.....+|++++.++..+|||++.+... .++++|..|.++|||+++||++||+|++|||.++.++++.
T Consensus 5 ~~~~~~r~v~l~~~~~g~G~~l~~~~~-------------~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~ 71 (128)
T 2kjd_A 5 FTMLRPRLCTMKKGPSGYGFNLHSDKS-------------KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHG 71 (128)
T ss_dssp TTTCCCEEEEEECCSSSCCEEEEECSS-------------SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred CCCCCcEEEEEecCCCcccEEEEecCC-------------CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 356689999999999999999987632 2345899999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCCeEEEEEEecCc
Q psy2827 84 QVVELIKS-GGDVLSLTVISVSP 105 (373)
Q Consensus 84 ~~~~~i~~-~g~~v~l~V~r~~~ 105 (373)
++..+++. .+..+.+++.|.+.
T Consensus 72 ~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 72 DVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp HHHHHHHTTCSEEEEEEECHHHH
T ss_pred HHHHHHHhCCCCEEEEEEEeCCc
Confidence 99999998 56777888877543
No 88
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.35 E-value=8.6e-12 Score=99.51 Aligned_cols=91 Identities=23% Similarity=0.433 Sum_probs=74.4
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~ 82 (373)
.+...+.|++.|.. .+|||++.+... + ...|+++|..|.++|||++ +||++||+|++|||+++.+.++
T Consensus 6 ~~~~~~~v~l~k~~g~~lG~~i~~~~~---------~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~ 75 (101)
T 2yt7_A 6 SGDNCREVHLEKRRGEGLGVALVESGW---------G-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPL 75 (101)
T ss_dssp TTCCCEEEEEECCTTCCCCEEEEECCC---------S-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCH
T ss_pred CCCceEEEEEEeCCCCccCEEEEeCCC---------C-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 45567889999776 689999975311 0 1134568999999999999 5699999999999999977779
Q ss_pred HHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 83 KQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
+++.++++. .++.++|+|.|..|
T Consensus 76 ~~~~~~l~~~~~g~~v~l~v~R~~p 100 (101)
T 2yt7_A 76 AACQAAVRETKSQTSVTLSIVHCPP 100 (101)
T ss_dssp HHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred HHHHHHHHhCCCCCeEEEEEEeCCC
Confidence 999999997 68999999988654
No 89
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.35 E-value=9.5e-13 Score=106.86 Aligned_cols=98 Identities=31% Similarity=0.432 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
+|.|+..++|+|.|+. .+|||++.++.+... .... .....+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 4 ~p~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~--~~~~-~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~ 80 (111)
T 1uju_A 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHA--GNPR-DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL 80 (111)
T ss_dssp SCCSCSSSCEEEECCTTCCCCEEEECCSSSSC--SCSS-CTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTS
T ss_pred CCCCCccEEEEEEECCCCccCEEEECCccccc--cccc-cCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 4567778899999987 789999998743210 0000 0112356899999999999999 999999999999999988
Q ss_pred CHHHHHHHHHhCCCeEEEEEEec
Q psy2827 81 THKQVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~ 103 (373)
++.++..+++..+..+.++|.|.
T Consensus 81 ~~~~~~~~l~~~g~~v~l~v~r~ 103 (111)
T 1uju_A 81 THGEAVQLLRSVGDTLTVLVCDG 103 (111)
T ss_dssp CHHHHHHHHSSCSSEEEECCCCC
T ss_pred CHHHHHHHHHcCCCeEEEEEEEC
Confidence 89999999988889999988764
No 90
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.34 E-value=1.1e-11 Score=101.03 Aligned_cols=82 Identities=29% Similarity=0.523 Sum_probs=72.1
Q ss_pred CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI-RKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL-~~GD~Il~InG~~v~~~s~~~~ 85 (373)
..++|++.|+.. +|||++.+. ..+++|..|.++|||+++|| ++||+|++|||+++.+++++++
T Consensus 25 ~~~~v~l~k~~~~~lG~~i~~~---------------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~ 89 (113)
T 1va8_A 25 TVKIVRIEKARDIPLGATVRNE---------------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEV 89 (113)
T ss_dssp ECEEEEEEECTTCCCCEEEEEC---------------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHH
T ss_pred ceEEEEEEeCCCCceeEEEEeC---------------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence 568899999987 999999875 13458999999999999998 9999999999999998889999
Q ss_pred HHHHHhCCCeEEEEEEecC
Q psy2827 86 VELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r~~ 104 (373)
..+++..+..+.++|.|..
T Consensus 90 ~~~l~~~~~~v~l~v~r~~ 108 (113)
T 1va8_A 90 FDLLSDMHGTLTFVLIPSS 108 (113)
T ss_dssp HHHHHHCCEEEEEEEECCC
T ss_pred HHHHHcCCCeEEEEEEECC
Confidence 9999887778999988644
No 91
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.34 E-value=1.1e-11 Score=99.18 Aligned_cols=93 Identities=27% Similarity=0.391 Sum_probs=71.5
Q ss_pred EEEEEEcCCC----CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 10 REVQIAKSDT----GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 10 r~v~l~r~~~----g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
+.+++.+... +|||++.++.+.......++......+++|..|.++|||+++||++||+|++|||.++.+.+|+++
T Consensus 6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 85 (104)
T 3sfj_A 6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA 85 (104)
T ss_dssp EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 4566665442 499999977543211112222233456789999999999999999999999999999999889999
Q ss_pred HHHHHh-CCCeEEEEEEe
Q psy2827 86 VELIKS-GGDVLSLTVIS 102 (373)
Q Consensus 86 ~~~i~~-~g~~v~l~V~r 102 (373)
...++. .++.+.++|.|
T Consensus 86 ~~~l~~~~g~~v~l~v~R 103 (104)
T 3sfj_A 86 RKRLTKRSEEVVRLLVTR 103 (104)
T ss_dssp HHHHTCTTCSEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEEEc
Confidence 999986 67899999876
No 92
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.34 E-value=1.4e-11 Score=97.02 Aligned_cols=89 Identities=25% Similarity=0.338 Sum_probs=71.4
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
..+|++.+++ +|||++.++.+..+.. ......+++|..|.++|||++ ||++||+|++|||+++.++++.++...
T Consensus 4 ~~~v~l~~~~-~lG~~i~gg~~~~~~p----~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~ 77 (95)
T 1mfg_A 4 EIRVRVEKDP-ELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSL 77 (95)
T ss_dssp EEEEEEECSS-SCSEEEEECBTSCCCS----SSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHH
T ss_pred EEEEEECCCC-CCCEEEeCCcCccCCc----cccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence 4567778776 8999999875321100 011234568999999999999 999999999999999999899999999
Q ss_pred HHhCCCeEEEEEEec
Q psy2827 89 IKSGGDVLSLTVISV 103 (373)
Q Consensus 89 i~~~g~~v~l~V~r~ 103 (373)
++..++.+.++|.|.
T Consensus 78 ~~~~~~~v~l~v~R~ 92 (95)
T 1mfg_A 78 LKTFQNTVELIIVRE 92 (95)
T ss_dssp HHHCCSEEEEEEEEE
T ss_pred hhcCCCeEEEEEEeC
Confidence 988889999999874
No 93
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.34 E-value=2.4e-11 Score=98.29 Aligned_cols=95 Identities=26% Similarity=0.409 Sum_probs=76.5
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
..+....++.+.++..+|||++.++.+... ......+++|..|.++|||+++||++||+|++|||+++.+.++.
T Consensus 11 ~~~~~~~~~~l~~~~~glG~~i~~g~~~~~------~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~ 84 (110)
T 1x5q_A 11 RIEEEELTLTILRQTGGLGISIAGGKGSTP------YKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH 84 (110)
T ss_dssp CCCCEEEEEEEECSSSSCSEEEEECTTSCC------SSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred cCCcceEEEEEecCCCeeeEEEEccccCCc------cccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHH
Confidence 344556778888988899999997643210 00012456899999999999999999999999999999998898
Q ss_pred HHHHHHHhCCCeEEEEEEecC
Q psy2827 84 QVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++...++..++.+.|+|.|..
T Consensus 85 ~~~~~~~~~g~~v~l~v~R~g 105 (110)
T 1x5q_A 85 EAVEALRGAGTAVQMRVWRES 105 (110)
T ss_dssp HHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHhhCCCCeEEEEEEECC
Confidence 888888878999999999854
No 94
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.34 E-value=7.3e-12 Score=99.47 Aligned_cols=83 Identities=27% Similarity=0.387 Sum_probs=69.9
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
.+-+|.|.|.|.. .++||++....+ .+++|..|.++|||+++| |++||+|++|||.++.+++|+
T Consensus 10 ~~~~~~v~l~K~~~~~lG~~l~~~~~--------------~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~ 75 (97)
T 2ejy_A 10 GHMVRLIQFEKVTEEPMGICLKLNEK--------------QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVD 75 (97)
T ss_dssp ---CEEEEEEECSSSCCSEEEEECTT--------------CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSH
T ss_pred CCccEEEEEEeCCCCCeeEEEEeCCC--------------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 4568999999876 589999986421 235899999999999999 999999999999999988899
Q ss_pred HHHHHHHhCCCeEEEEEEe
Q psy2827 84 QVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r 102 (373)
++.++++..++.++++|.+
T Consensus 76 ~~~~~l~~~~~~v~L~V~~ 94 (97)
T 2ejy_A 76 QLQKAMKETKGMISLKVIP 94 (97)
T ss_dssp HHHHHHHHCCEEEEEEEEC
T ss_pred HHHHHHHcCCCeEEEEEEE
Confidence 9999999877788888864
No 95
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.33 E-value=1.2e-11 Score=99.60 Aligned_cols=84 Identities=33% Similarity=0.536 Sum_probs=67.9
Q ss_pred EEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy2827 14 IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSG 92 (373)
Q Consensus 14 l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~ 92 (373)
+..+..+|||++.++.+... .+...+++|..|.++|||+++| |++||+|++|||.++.+.+|.++...++..
T Consensus 8 ~~~~~~~~Gf~i~gG~~~~~-------~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 80 (106)
T 4amh_A 8 VPRGSKGLGFSIAGGVGNQH-------WPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT 80 (106)
T ss_dssp ----CCCSCEEEEECTTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC
T ss_pred CCCCCCccCEEEEeccCCcc-------ccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 34556789999999854321 1112356899999999999999 999999999999999998999999999988
Q ss_pred CCeEEEEEEecC
Q psy2827 93 GDVLSLTVISVS 104 (373)
Q Consensus 93 g~~v~l~V~r~~ 104 (373)
+..+.++|.|..
T Consensus 81 ~~~v~l~v~R~~ 92 (106)
T 4amh_A 81 SDFVYLKVAKPG 92 (106)
T ss_dssp CSEEEEEEECCS
T ss_pred CCeEEEEEEeCC
Confidence 889999999854
No 96
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=2.4e-12 Score=102.84 Aligned_cols=91 Identities=32% Similarity=0.447 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
+++.....+++++.++..+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 5 ~~~~~~~~~~v~l~~~~~g~G~~~~~~~~~------------~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 72 (103)
T 1wfv_A 5 SSGQDFDYFTVDMEKGAKGFGFSIRGGREY------------KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM 72 (103)
T ss_dssp CSCCCSCCEECCEECCTTSSSBCCEEETTT------------TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSC
T ss_pred CCccCceEEEEEEecCCCcCCEEEeccccC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence 456667778899999989999999876431 1245799999999999999 999999999999999998
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++.++...++..++.+.++|.|..
T Consensus 73 ~~~~~~~~~~~~g~~v~l~v~R~~ 96 (103)
T 1wfv_A 73 THARAIELIKSGGRRVRLLLKRGT 96 (103)
T ss_dssp CHHHHHHHHHHHCSEECEEEECTT
T ss_pred CHHHHHHHHHcCCCeEEEEEEECC
Confidence 899999999877889999998743
No 97
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=100.99 Aligned_cols=83 Identities=30% Similarity=0.424 Sum_probs=70.5
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
....++|+|.|++.||||+|.+.. .+.+|..+.+ +++.|||++||+|++|||+++.+++|+++
T Consensus 10 ~~~~~~V~L~Kg~~G~GFsI~~~~---------------~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~ev 72 (113)
T 3soe_A 10 AGLLVTIPLIKGPKGFGFAIADSP---------------TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQV 72 (113)
T ss_dssp HCEEEEEEEECBTTBSSEEEEEET---------------TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHH
T ss_pred CCCEEEEEEEECCCcccEEEeCCC---------------CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHH
Confidence 345688999999999999996541 2346888877 58889999999999999999999999999
Q ss_pred HHHHHh--CCCeEEEEEEecCc
Q psy2827 86 VELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 86 ~~~i~~--~g~~v~l~V~r~~~ 105 (373)
+++|+. .|..+.|+|.|...
T Consensus 73 v~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 73 VEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp HHHHHHSCTTCEEEEEEEESSC
T ss_pred HHHHHcCCCCCEEEEEEEECCc
Confidence 999998 38899999998654
No 98
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.33 E-value=1.2e-11 Score=104.66 Aligned_cols=100 Identities=27% Similarity=0.355 Sum_probs=77.5
Q ss_pred CCCcEEEEEEcCCC----CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827 6 QTGPREVQIAKSDT----GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 6 ~~~~r~v~l~r~~~----g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s 81 (373)
....++|+|.+.+. ++||++.++.+.......++......+++|..|.++|||++|||++||+|++|||.++.+++
T Consensus 21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~ 100 (139)
T 2vz5_A 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT 100 (139)
T ss_dssp -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence 34668889987653 69999987644222222333322335678999999999999999999999999999999888
Q ss_pred HHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827 82 HKQVVELIKS-GGDVLSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~-~g~~v~l~V~r~~~ 105 (373)
+.++..+++. .|+.+.++|.|...
T Consensus 101 ~~~~~~~l~~~~g~~v~l~v~R~g~ 125 (139)
T 2vz5_A 101 HDQARKRLTKRSEEVVRLLVTRQSL 125 (139)
T ss_dssp HHHHHHHHCCTTCSEEEEEEEECC-
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCE
Confidence 9999999987 68999999998654
No 99
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=2e-11 Score=100.16 Aligned_cols=89 Identities=18% Similarity=0.411 Sum_probs=76.0
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
...++.|.|.|+. .+|||++.+..+.. .++++|..|.++|||+++| |++||+|++|||+++.+.+++
T Consensus 13 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~-----------~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~ 81 (117)
T 1v62_A 13 ASGPLMVEIVKTPGSALGISLTTTSLRN-----------KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL 81 (117)
T ss_dssp SSSSEEEEEECCTTCCCCCEEEEECCSS-----------SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHH
T ss_pred CCCcEEEEEEcCCCCcccEEEEccCCCC-----------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence 3467999999987 78999998863311 1235899999999999999 999999999999999888899
Q ss_pred HHHHHHHhCCCeEEEEEEecCc
Q psy2827 84 QVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
++..+++..++.+.|+|.|...
T Consensus 82 ~~~~~l~~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 82 EATKLLASISEKVRLEILPVPQ 103 (117)
T ss_dssp HHHHHHHSCSSEEEEEECCBTT
T ss_pred HHHHHHHhCCCeEEEEEEECCC
Confidence 9999999889999999988544
No 100
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.33 E-value=1.9e-11 Score=97.62 Aligned_cols=95 Identities=28% Similarity=0.480 Sum_probs=73.1
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
-.|+++++.|.. ..|||++.+....... ..+. ....+++|..|.++|||+++| |++||+|++|||.++.++++.+
T Consensus 3 ldp~~v~l~~~~~~~lG~~~~~~~~~~~~--~~~~-~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~ 79 (103)
T 2fcf_A 3 MQPRRVELWREPSKSLGISIVGGRGMGSR--LSNG-EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 79 (103)
T ss_dssp CSCEEEEECCCC-CCCCEEEECCCC----------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCEEEEEEeCCCCceeEEEEccCCCCcc--cccC-CCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 468999999987 5699999875332111 1111 112456899999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEecC
Q psy2827 85 VVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~ 104 (373)
+..+++..+..+.++|.|..
T Consensus 80 ~~~~l~~~~~~v~l~v~r~~ 99 (103)
T 2fcf_A 80 AVEAIRKAGNPVVFMVQSII 99 (103)
T ss_dssp HHHHHHTCCSSEEEEEECCC
T ss_pred HHHHHHhCCCcEEEEEEECC
Confidence 99999986669999998754
No 101
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.32 E-value=1.2e-11 Score=99.63 Aligned_cols=96 Identities=26% Similarity=0.397 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEEEE--cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC
Q psy2827 2 YSTQQTGPREVQIA--KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE 78 (373)
Q Consensus 2 ~~~~~~~~r~v~l~--r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~ 78 (373)
+.+.....+++++. +...+|||++.+..+.+. . ....+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 6 ~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~----~---~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~ 78 (108)
T 2jre_A 6 SDASGFSLYSVELFREKDTSSLGISISGMRDQST----T---GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQ 78 (108)
T ss_dssp CSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSC----S---SCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECT
T ss_pred ccccCcEEEEEEEEecCCCCCcCEEEEcccCCCC----C---CCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECC
Confidence 34555667888885 455789999987643211 0 012356899999999999999 9999999999999999
Q ss_pred CCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 79 GATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 79 ~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++++.++..+++..+..+.++|.|..
T Consensus 79 ~~~~~~~~~~l~~~g~~v~l~v~R~~ 104 (108)
T 2jre_A 79 GMAQSDVVEVLRNAGNPVRLLLIRRL 104 (108)
T ss_dssp TSCHHHHHHHHHHHCSEEEEEEEECC
T ss_pred CCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence 98899999999887889999998754
No 102
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.32 E-value=2.2e-11 Score=96.03 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=73.6
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
...++++.++..+|||++.++.+.+.. .....+++|..|.++|||+++||++||+|++|||+++.+.++.+...
T Consensus 3 ~~~~v~~~~~~~glG~~i~~g~~~~~~------~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~ 76 (97)
T 2w4f_A 3 EELTLTILRQTGGLGISIAGGKGSTPY------KGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVE 76 (97)
T ss_dssp CEEEEEEECBTTBSSEEEEECTTSCCS------BTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred eEEEEEEEeCCCceeEEEECCccCCcc------cCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHH
Confidence 456789999988999999986432110 00124568999999999999999999999999999999988877777
Q ss_pred HHHhCCCeEEEEEEecC
Q psy2827 88 LIKSGGDVLSLTVISVS 104 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r~~ 104 (373)
.++..++.+.++|.|..
T Consensus 77 ~~~~~g~~v~l~v~R~g 93 (97)
T 2w4f_A 77 ALRGAGTAVQMRVWRER 93 (97)
T ss_dssp HHHTSCSEEEEEEECCS
T ss_pred HHhCCCCeEEEEEEeCC
Confidence 77778999999998754
No 103
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.7e-12 Score=98.69 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=70.3
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
.+..+|+|+|.|.+ .+|||++.+. ..+++|..|.++|||+++| |++||+|++|||+++ +.++
T Consensus 3 ~~~~~r~v~l~k~~~~~lG~~i~~~---------------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~ 66 (91)
T 2e7k_A 3 SGSSGRMVGIRKTAGEHLGVTFRVE---------------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDP 66 (91)
T ss_dssp CCCCSCBCCBCCCTTCCCCEEEEES---------------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCH
T ss_pred CCCCcEEEEEEECCCCcEeEEEEec---------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCH
Confidence 45677889998764 6899999874 1235899999999999987 999999999999999 6669
Q ss_pred HHHHHHHHhCCCeEEEEEEec
Q psy2827 83 KQVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~ 103 (373)
+++.++++..++.+.++|.+.
T Consensus 67 ~~~~~~l~~~~~~v~l~v~~~ 87 (91)
T 2e7k_A 67 RALQELLRNASGSVILKILSG 87 (91)
T ss_dssp HHHHHHHHTCCSSBCEEEECC
T ss_pred HHHHHHHHcCCCeEEEEEEEC
Confidence 999999998778899988763
No 104
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.32 E-value=1.2e-11 Score=98.85 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=75.1
Q ss_pred CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
+......+|++.|++ +|||++.++.+..+.. ......+++|..|.++|||++ ||++||+|++|||.++.+.++.
T Consensus 7 ~~~~~~~~v~l~~~~-~lG~~i~gg~~~~~~p----~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~ 80 (103)
T 1n7t_A 7 ELAKQEIRVRVEKDP-ELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHG 80 (103)
T ss_dssp SSSCCCEEEEEECSS-CCCBEEEECTTSSBCS----SCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHH
T ss_pred CcccEEEEEEEccCC-CccEEEEcccCCCCCc----cccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHH
Confidence 445566788888876 8999999864321100 011234568999999999999 9999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++..++.+.++|.|.
T Consensus 81 ~~~~~~~~~g~~v~l~v~R~ 100 (103)
T 1n7t_A 81 QAVSLLKTFQNTVELIIVRE 100 (103)
T ss_dssp HHHHHHHHCCSEEEEEEECC
T ss_pred HHHHHhhcCCCeEEEEEEec
Confidence 99999988889999999874
No 105
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.32 E-value=2.1e-11 Score=96.03 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=66.2
Q ss_pred CcEEEEEEcCCC---CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 8 GPREVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 8 ~~r~v~l~r~~~---g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
.+|.|++.|+.. +|||++.+....+ ..+++|..|.++|||++|||++||+|++|||+++.+++|++
T Consensus 6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~-----------~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~ 74 (94)
T 3kzd_A 6 VTHSIHIEKSDTAADTYGFSLSSVEEDG-----------IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSM 74 (94)
T ss_dssp EEEEEEEEC------CCSEEEEEECSSS-----------SCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHH
T ss_pred ceeEEEEEeCCCCcCCcCEEEEecCCCC-----------cCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 468899999874 7999998742210 23468999999999999999999999999999999988999
Q ss_pred HHHHHHhCCCeEEEEEEe
Q psy2827 85 VVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r 102 (373)
+..++++ ..++++|..
T Consensus 75 l~~~l~~--~~l~ltV~~ 90 (94)
T 3kzd_A 75 LKDFLSQ--PSLGLLVRT 90 (94)
T ss_dssp HHHHHHS--SEEEEEEEE
T ss_pred HHHHHhC--CeEEEEEEe
Confidence 9999875 568887764
No 106
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.31 E-value=4.9e-12 Score=102.71 Aligned_cols=88 Identities=38% Similarity=0.621 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s 81 (373)
...++.++.|+|.|+..+|||++.+..+ .++++|..|.+++||+++| |++||+|++|||+++.+++
T Consensus 10 ~~~~~~~~~v~l~k~~~glG~~l~~~~~-------------~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~ 76 (113)
T 1um7_A 10 GGDAREPRKIILHKGSTGLGFNIVGGED-------------GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76 (113)
T ss_dssp CCCCCSEEEEEEECCSSCSSBCCBCCST-------------TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCC
T ss_pred CcCCCceEEEEEEECCCcccEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 3456789999999999999999987632 1234789999999999999 9999999999999999988
Q ss_pred HHHHHHHHHhCCCeEEEEEEec
Q psy2827 82 HKQVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~ 103 (373)
+.++..+++..++.+.++|.|.
T Consensus 77 ~~~~~~~~~~~~~~v~l~v~r~ 98 (113)
T 1um7_A 77 HEQAAAALKRAGQSVTIVAQYR 98 (113)
T ss_dssp HHHHHHHHHSCCSEEEEEEECC
T ss_pred HHHHHHHHHhCCCcEEEEEEEC
Confidence 8999988888889999999864
No 107
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.31 E-value=3.4e-12 Score=103.91 Aligned_cols=84 Identities=29% Similarity=0.534 Sum_probs=71.6
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..+|+|+|.|++.+|||++.+. .| ++|..|.+++||++|||++||+|++|||+++.+++|+++.
T Consensus 14 ~~~r~v~l~~~~~~~G~~l~~~---------------~~-v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~ 77 (111)
T 1vae_A 14 SPPRGIHFTVEEGDLGFTLRGN---------------TP-VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVM 77 (111)
T ss_dssp CCCCCCCEECCSSCCSCCEESS---------------SS-CEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCeEEEEEcCCCcccEEEeCC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 3678899999989999998654 12 3799999999999999999999999999999966699999
Q ss_pred HHHHh-CCCeEEEEEEecCcc
Q psy2827 87 ELIKS-GGDVLSLTVISVSPE 106 (373)
Q Consensus 87 ~~i~~-~g~~v~l~V~r~~~~ 106 (373)
.+++. .+..+.++|.+..+.
T Consensus 78 ~~i~~~~~~~v~l~V~~~~~~ 98 (111)
T 1vae_A 78 KLLKSFGGEEVEMKVVSLLDS 98 (111)
T ss_dssp HHHHHTTTSEECEEEECEECC
T ss_pred HHHHhCCCceEEEEEEecCCC
Confidence 99988 456799999875443
No 108
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.31 E-value=1.5e-11 Score=107.70 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=73.1
Q ss_pred CcEEEEEEcCCCCccEEEEec-ccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~-~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~ 85 (373)
...+|+|.|+..||||+|.+. ..... .....+++|..|.+||||+++| |++||+|++|||+++.++++.++
T Consensus 80 ~~~~v~l~k~~~glG~~i~g~~~g~~~-------~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~ 152 (170)
T 3egg_C 80 ELFPVELEKDSEGLGISIIGMGAGADM-------GLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFA 152 (170)
T ss_dssp EEEEEEEECBTTBSSEEEEEECSSSSC-------CSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHH
T ss_pred eEEEEEEEeCCCeEeEEEEecccCCcc-------ccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 456788999999999999983 11100 0012456899999999999999 99999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEEe
Q psy2827 86 VELIKSGGDVLSLTVIS 102 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r 102 (373)
+.+++.++..+.|+|.|
T Consensus 153 ~~~l~~~g~~v~L~V~R 169 (170)
T 3egg_C 153 ASVLRNTKGRVRFMIGR 169 (170)
T ss_dssp HHHHHHCCSEEEEEEEE
T ss_pred HHHHHcCCCEEEEEEEe
Confidence 99999988999999986
No 109
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.31 E-value=1.5e-11 Score=109.68 Aligned_cols=90 Identities=26% Similarity=0.508 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827 3 STQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s 81 (373)
.+.+..++.|++.|. +.+|||++.++... ..+++|..|.+||||+++||++||+|++|||.++.+++
T Consensus 79 ~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~------------~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~ 146 (192)
T 3k1r_A 79 PRRSRKLKEVRLDRLHPEGLGLSVRGGLEF------------GCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCT 146 (192)
T ss_dssp CCCCSSCEEEEEETTSTTCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCC
T ss_pred CCCCCceEEEEEEeCCCCceeEEEEccccc------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC
Confidence 345567899999998 57899999886431 23458999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
|.++...++. ++.+.++|.|.+.
T Consensus 147 ~~~~~~~l~~-~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 147 HEEVINLIRT-EKTVSIKVRHIGL 169 (192)
T ss_dssp HHHHHHHHTS-SSEEEEEEEECCE
T ss_pred HHHHHHHHcC-CCeEEEEEEECCc
Confidence 9999999988 8999999988543
No 110
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.30 E-value=8.5e-12 Score=102.21 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=75.4
Q ss_pred CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
...+++|+|.|++ .+|||++.++.+.+. ......+++|..|.++|||+ +||++||+|++|||+++.++++.+
T Consensus 12 ~~~~~~v~l~k~~~~glG~~i~gg~~~~~------~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~ 84 (117)
T 2csj_A 12 IWEQYTVTLQKDSKRGFGIAVSGGRDNPH------FENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSF 84 (117)
T ss_dssp EEEEEEEEEECCSSSTTCEEEECCSSCCC------CSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHH
T ss_pred cceEEEEEEEECCCCccCEEEeCCcCCcc------ccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHH
Confidence 3467889999997 799999998754211 00012346899999999997 999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEecC
Q psy2827 85 VVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~ 104 (373)
+...++..++.+.|+|.|..
T Consensus 85 ~~~~l~~~~~~v~l~v~R~~ 104 (117)
T 2csj_A 85 AVQQLRKSGKIAAIVVKRPR 104 (117)
T ss_dssp HHHHHHHSCSEEEEEEEEEE
T ss_pred HHHHHhcCCCeEEEEEEECC
Confidence 99999988899999998854
No 111
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-11 Score=99.29 Aligned_cols=93 Identities=28% Similarity=0.476 Sum_probs=76.0
Q ss_pred CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827 2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~ 80 (373)
+++.+.....+++.++..+|||++.+..... ++ ..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 24 ~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~------~g---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~ 94 (121)
T 2kom_A 24 NTKKIGKRLNIQLKKGTEGLGFSITSRDVTI------GG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK 94 (121)
T ss_dssp CCCCSCEEEEEEEECCTTCCCEEEECCCCSS------SS---SCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTS
T ss_pred cCccCCeEEEEEEEcCCCcEeEEEEeccCCc------CC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCC
Confidence 3455556677888888889999998763210 01 2346899999999999999 999999999999999998
Q ss_pred CHHHHHHHHHhC--CCeEEEEEEec
Q psy2827 81 THKQVVELIKSG--GDVLSLTVISV 103 (373)
Q Consensus 81 s~~~~~~~i~~~--g~~v~l~V~r~ 103 (373)
+++++..+++.. +..+.++|.|.
T Consensus 95 ~~~~~~~~l~~~~~g~~v~l~v~R~ 119 (121)
T 2kom_A 95 SQEEVVSLLRSTKMEGTVSLLVFRQ 119 (121)
T ss_dssp CHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred CHHHHHHHHhcCCCCCEEEEEEEeC
Confidence 899999999873 88999999874
No 112
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.1e-11 Score=96.91 Aligned_cols=88 Identities=32% Similarity=0.453 Sum_probs=73.6
Q ss_pred CCCCCcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827 4 TQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~ 82 (373)
.....+++|+|.|.+.+ |||++.+.... ..+++|..|.++|||+++||++||+|++|||.++.+.++
T Consensus 6 ~~~~~~~~v~l~~~~~~~lG~~~~~~~~~------------~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~ 73 (100)
T 2eeh_A 6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEH------------GLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTM 73 (100)
T ss_dssp SCCCEECCEEECCCSSSSCSEEEECCTTT------------TCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCH
T ss_pred CCCCeEEEEEEEECCCCCccEEEEccccC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence 34456788999998765 99999875321 234689999999999999999999999999999999888
Q ss_pred HHHHHHHHhCCCeEEEEEEecC
Q psy2827 83 KQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.++...++. +..+.++|.|..
T Consensus 74 ~~~~~~~~~-~~~v~l~v~R~g 94 (100)
T 2eeh_A 74 GSAVKVLTS-SSRLHMMVRRMG 94 (100)
T ss_dssp HHHHHHHHS-CSSEEEEEEECS
T ss_pred HHHHHhhcC-CCEEEEEEEECC
Confidence 999988887 789999998854
No 113
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=100.17 Aligned_cols=89 Identities=22% Similarity=0.401 Sum_probs=75.6
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
|...+.+++.++..+|||++.++.+.+ ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus 15 ~~~~~~v~l~~~~~glG~~l~~~~~~~-----------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~ 83 (116)
T 2dm8_A 15 PGQEMIIEISKGRSGLGLSIVGGKDTP-----------LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEE 83 (116)
T ss_dssp TTSCEEEEEECCSSCCCCCCBCCTTSS-----------CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHH
T ss_pred CCCEEEEEEEECCCcccEEEeCCCCCC-----------cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHH
Confidence 445688999999999999998764321 1245899999999999999 9999999999999999988999
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+..+++..+..+.++|.|...
T Consensus 84 ~~~~l~~~~~~v~l~v~R~~~ 104 (116)
T 2dm8_A 84 AITALRQTPQKVRLVVYRDEA 104 (116)
T ss_dssp HHHHHHTCCSEEEEEEECCSS
T ss_pred HHHHHHhCCCeEEEEEEeCCc
Confidence 999998877899999987543
No 114
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.29 E-value=1.8e-11 Score=98.50 Aligned_cols=83 Identities=29% Similarity=0.409 Sum_probs=70.6
Q ss_pred CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC--CCCCCEEEEECCEEcCCCCHHH
Q psy2827 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG--IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG--L~~GD~Il~InG~~v~~~s~~~ 84 (373)
..+.+++.|+. .+|||++.++.+. ..+++|..|.++|||+++| |++||+|++|||.++.++++.+
T Consensus 17 ~~~~v~l~~~~~~~~G~~~~gg~~~------------~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~ 84 (107)
T 3nfk_A 17 NLVLIRMKPDENGRFGFNVKGGYDQ------------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ 84 (107)
T ss_dssp CCEEEEECCCTTSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHH
T ss_pred CEEEEEEEcCCCCCCCEEEEccCCC------------CCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHH
Confidence 46788998887 7899999886431 1235899999999999999 9999999999999999999999
Q ss_pred HHHHHHhCC----CeEEEEEEe
Q psy2827 85 VVELIKSGG----DVLSLTVIS 102 (373)
Q Consensus 85 ~~~~i~~~g----~~v~l~V~r 102 (373)
+...++..+ ..+.|+|.|
T Consensus 85 ~~~~i~~~~~~~~~~v~l~v~r 106 (107)
T 3nfk_A 85 VVLFIKASCERHSGELMLLVRP 106 (107)
T ss_dssp HHHHHHCGGGSBTTBEEEEEEC
T ss_pred HHHHHHhccccCCcEEEEEEEc
Confidence 999999854 489998875
No 115
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.29 E-value=3.4e-11 Score=99.69 Aligned_cols=96 Identities=29% Similarity=0.497 Sum_probs=75.0
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
..|+++++.|.. .+|||++.+..+..... .+. ....+++|..|.++|||++|| |++||+|++|||.++.++++++
T Consensus 23 ~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~--~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~ 99 (123)
T 2iwq_A 23 MQPRRVELWREPSKSLGISIVGGRGMGSRL--SNG-EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ 99 (123)
T ss_dssp CCCEEEEECCCTTSCCSEEEEECC------------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCEEEEEEecCCCCccEEEEeccCccccc--ccc-CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 467999999886 57999998753321111 111 112457899999999999999 9999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+..+++..+..+.++|.|..+
T Consensus 100 ~~~~l~~~~~~v~l~v~r~~~ 120 (123)
T 2iwq_A 100 AVEAIRKAGNPVVFMVQSIIS 120 (123)
T ss_dssp HHHHHHHCCSSEEEEEECCCC
T ss_pred HHHHHHcCCCeEEEEEEECCc
Confidence 999999877799999987654
No 116
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.29 E-value=1.1e-11 Score=103.17 Aligned_cols=95 Identities=22% Similarity=0.418 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEEE---cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC
Q psy2827 3 STQQTGPREVQIA---KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE 78 (373)
Q Consensus 3 ~~~~~~~r~v~l~---r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~ 78 (373)
++.....+++++. ++..+|||++.+..+... + ...+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 18 ~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~-----~---~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 18 SLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRET-----G---TDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTT-----T---EEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCCCCceEEEEEEeeCCCCccCeEEecccCCCC-----C---CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 4444455565555 455789999998743200 0 01346899999999999999 9999999999999999
Q ss_pred CCCHHHHHHHHHhC-------CCeEEEEEEecCc
Q psy2827 79 GATHKQVVELIKSG-------GDVLSLTVISVSP 105 (373)
Q Consensus 79 ~~s~~~~~~~i~~~-------g~~v~l~V~r~~~ 105 (373)
+++|.+++.+++.. +..+.|+|.|..+
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 99999999999864 7899999998543
No 117
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.28 E-value=1.8e-11 Score=99.80 Aligned_cols=85 Identities=34% Similarity=0.601 Sum_probs=73.7
Q ss_pred CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.|+++.+.+.. .+|||++..... ..+++|..|.++|||+++||++||+|++|||+++.+.++.++.
T Consensus 13 dp~~~~l~~~~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~ 79 (114)
T 2edz_A 13 NPRECKLSKQEGQNYGFFLRIEKD-------------TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVV 79 (114)
T ss_dssp CCEEEEEECCTTCCCSCEEECCTT-------------CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHH
T ss_pred CCEEEEEeCCCCCcccEEEEEecC-------------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 78999999874 679999986532 1235799999999999999999999999999999998899999
Q ss_pred HHHHhCCCeEEEEEEecCc
Q psy2827 87 ELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~ 105 (373)
..++..|+.+.++|.|...
T Consensus 80 ~~l~~~g~~v~l~v~R~~~ 98 (114)
T 2edz_A 80 ELVRKSGNSVTLLVLDGDS 98 (114)
T ss_dssp HHHHHTCSEEEEEEECHHH
T ss_pred HHHHcCCCEEEEEEEECCc
Confidence 9998888999999988543
No 118
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.28 E-value=1.1e-11 Score=98.68 Aligned_cols=84 Identities=31% Similarity=0.453 Sum_probs=71.2
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
.......+++.++..+|||++.+. .+ ++|..|.++|||+++||++||+|++|||+++.++++.+
T Consensus 12 ~~~~~~~v~l~~~~~g~G~~~~~~---------------~~-~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~ 75 (100)
T 1whd_A 12 ENGEKLQITIRRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE 75 (100)
T ss_dssp CCCEEEEEEEECCSSSSSCBCCCS---------------SS-CBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHH
T ss_pred cccceEEEEEECCCCeeeEEEeCC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 344567788999888999988654 12 36889999999999999999999999999999888999
Q ss_pred HHHHHHhCCCeEEEEEEecC
Q psy2827 85 VVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~ 104 (373)
+..+++..+..+.++|.|..
T Consensus 76 ~~~~l~~~~~~v~l~v~R~~ 95 (100)
T 1whd_A 76 LAHEIRSCPSEIILLVWRVS 95 (100)
T ss_dssp HHHHHHHCSSEEEEEEEECC
T ss_pred HHHHHHcCCCeEEEEEEECC
Confidence 99999887677999998753
No 119
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.28 E-value=2.9e-11 Score=97.25 Aligned_cols=93 Identities=23% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
....+++|+|.|++ .+|||++.++.+.+. ..+...+++|..|.++|||+ +||++||+|++|||+++.+++..
T Consensus 4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~------~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~ 76 (107)
T 2h2b_A 4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPH------FQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHA 76 (107)
T ss_dssp CCEEEEEEEEECBTTTBTCEEEEECTTSCC------TTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHH
T ss_pred ccceeEEEEEEeCCCCccCEEEecCcCCCc------ccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHH
Confidence 34467899999996 789999998643211 00112356899999999999 99999999999999999997777
Q ss_pred HHHHHHHhCCCeEEEEEEecC
Q psy2827 84 QVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+....++..++.+.++|.|..
T Consensus 77 ~~~~~~~~~g~~v~l~v~R~~ 97 (107)
T 2h2b_A 77 FAVQQLRKSGKNAKITIRRKK 97 (107)
T ss_dssp HHHHHHHTCCSEEEEEEEEES
T ss_pred HHHHHhhCCCCEEEEEEEECC
Confidence 766666667899999998754
No 120
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.27 E-value=2.6e-11 Score=99.57 Aligned_cols=86 Identities=34% Similarity=0.482 Sum_probs=70.8
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+.+.+.+. .+|||++.++.+.. ...++|..|.++|||+++ ||++||+|++|||+++.+++|+++.+
T Consensus 19 ~~~~~~~~~-~glG~~i~gg~~~~-----------~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~ 86 (118)
T 1v6b_A 19 VRLLRIKKE-GSLDLALEGGVDSP-----------VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEA 86 (118)
T ss_dssp EEEEEEESC-SCCCCEEEEBTTSS-----------SCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHH
T ss_pred EEEEEECCC-CccCEEEEcccCCC-----------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 456666666 48999999874321 122589999999999999 89999999999999999999999999
Q ss_pred HHHh----CCCeEEEEEEecCcc
Q psy2827 88 LIKS----GGDVLSLTVISVSPE 106 (373)
Q Consensus 88 ~i~~----~g~~v~l~V~r~~~~ 106 (373)
.++. .|..++|+|.|..+.
T Consensus 87 ~l~~~~~~~g~~v~l~v~r~~~~ 109 (118)
T 1v6b_A 87 ALQKAWNQGGDWIDLVVAVCPPK 109 (118)
T ss_dssp HHHHHHHHTCSEEEEEEECCCSC
T ss_pred HHHHhhhcCCCeEEEEEEeCCcc
Confidence 9876 388999999986554
No 121
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.27 E-value=4e-11 Score=94.29 Aligned_cols=88 Identities=28% Similarity=0.500 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
...++++.++..++||++.+..+... ....+++|..|.++|||+++| |++||+|++|||.++.++++.++.
T Consensus 4 ~~~~v~l~~~~~~lG~~i~~~~~~~~--------~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 75 (97)
T 2iwn_A 4 ETFDVELTKNVQGLGITIAGYIGDKK--------LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAV 75 (97)
T ss_dssp EEEEEEEECBTTBSCEEEECCCCC------------CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred EEEEEEEecCCCCCcEEEEccCCCCC--------CCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 34567888888899999987632110 112345899999999999999 999999999999999998899999
Q ss_pred HHHHhCCCeEEEEEEec
Q psy2827 87 ELIKSGGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~ 103 (373)
..++..+..+.++|.|.
T Consensus 76 ~~~~~~~~~v~l~v~r~ 92 (97)
T 2iwn_A 76 EVLRHTGQTVLLTLMRR 92 (97)
T ss_dssp HHHHTCCSEEEEEEEEE
T ss_pred HHHHcCCCeEEEEEEeC
Confidence 88888889999999874
No 122
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.27 E-value=5.5e-11 Score=94.02 Aligned_cols=85 Identities=31% Similarity=0.442 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~ 82 (373)
++.+...+++++.|+..+|||++... ..+++|..|.++ |+++||++||+|++|||+++.+++|
T Consensus 5 ~~~~~~~~~v~l~~~~~g~G~~i~~~---------------~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~ 67 (96)
T 1ujv_A 5 SSGQAELMTLTIVKGAQGFGFTIADS---------------PTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSH 67 (96)
T ss_dssp CCCCCCCEEEEEECCSSSSSEEEEEE---------------TTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCH
T ss_pred CCCCceEEEEEEEeCCCceeEEEEcC---------------CCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCH
Confidence 34566778899999999999999754 124578999883 7789999999999999999999999
Q ss_pred HHHHHHHHh--CCCeEEEEEEecC
Q psy2827 83 KQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
+++.++++. .++.+.|+|.|..
T Consensus 68 ~~~~~~l~~~~~g~~v~l~v~R~g 91 (96)
T 1ujv_A 68 TEVVDILKDCPIGSETSLIIHRGS 91 (96)
T ss_dssp HHHHHHHHHSCTTSEEEEEEECCS
T ss_pred HHHHHHHHcCCCCCEEEEEEEECC
Confidence 999999998 3899999998753
No 123
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=100.80 Aligned_cols=84 Identities=31% Similarity=0.512 Sum_probs=72.7
Q ss_pred CCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827 4 TQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s 81 (373)
.+.+.+++|+|.|++ .+|||.+.+. .| ++|..|.++|||+ +||++||+|++|||+++.+.+
T Consensus 4 g~~~~~~~v~l~~~~~~~~~G~~l~~~---------------~~-~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~ 66 (96)
T 2edv_A 4 GSSGVRHTVKIDKDTLLQDYGFHISES---------------LP-LTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLS 66 (96)
T ss_dssp CSSCEEEEEEECCCSSSCSCSBCCCSS---------------SS-CBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCC
T ss_pred CCCCccEEEEEEECCCCCcccEEEecC---------------CC-eEEEEECCCCchh-hCCCCCCEEEEECCEECCCCC
Confidence 455667899999998 5799998763 12 3799999999996 999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEecC
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+.++...++..++.+.++|.|..
T Consensus 67 ~~~~~~~~~~~g~~v~l~v~R~~ 89 (96)
T 2edv_A 67 WERAVDILREAEDSLSITVVRCT 89 (96)
T ss_dssp HHHHHHHHHHCSSCEEEEEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEEECC
Confidence 99999999988899999999854
No 124
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.27 E-value=2.5e-11 Score=97.21 Aligned_cols=91 Identities=29% Similarity=0.461 Sum_probs=71.2
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
.+..++.+++.|.. .+|||++.+...+.. .......+++|..|.++|||+++||++||+|++|||+++.+++++
T Consensus 12 s~~~~~~v~l~~~~~~~~G~~l~~~~~~~~-----~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~ 86 (104)
T 2z17_A 12 SWSQRKLVTVEKQDNETFGFEIQSYRPQNQ-----NACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK 86 (104)
T ss_dssp CCSCCCEEEEECCTTSCCSEEEEECCCCCC-----SSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHH
T ss_pred CCCcceEEEEEeCCCCCccEEEEeeecccC-----CcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHH
Confidence 45677889999985 579999998421100 001123456899999999999999999999999999999977799
Q ss_pred HHHHHHHhCCCeEEEEE
Q psy2827 84 QVVELIKSGGDVLSLTV 100 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V 100 (373)
++..+++..+..+.++|
T Consensus 87 ~~~~~l~~~~~~v~l~v 103 (104)
T 2z17_A 87 QVVDLIRSSGNLLTIET 103 (104)
T ss_dssp HHHHHHHHTTTEEEEEC
T ss_pred HHHHHHHhCCCcEEEEE
Confidence 99999998656777765
No 125
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.26 E-value=5.7e-11 Score=99.42 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=66.2
Q ss_pred CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CC
Q psy2827 18 DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSG--GD 94 (373)
Q Consensus 18 ~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~--g~ 94 (373)
..+|||++.++..... ..++++|..|.++|||+++| |++||+|++|||+++.+.+|+++..+++.. +.
T Consensus 47 ~~~lG~~i~gg~~~~~---------~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~ 117 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTES---------GRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEP 117 (131)
T ss_dssp CTTTTEEEEEEEECSS---------SCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSS
T ss_pred CCCCCEEEecCccCCC---------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence 4579999988643211 02356899999999999999 999999999999999998999999999884 58
Q ss_pred eEEEEEEecCc
Q psy2827 95 VLSLTVISVSP 105 (373)
Q Consensus 95 ~v~l~V~r~~~ 105 (373)
.+.|+|.|..+
T Consensus 118 ~v~l~v~R~g~ 128 (131)
T 1wfg_A 118 QVELVVSRSGP 128 (131)
T ss_dssp EEEEEEEEECS
T ss_pred EEEEEEEcCCC
Confidence 99999988654
No 126
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.26 E-value=1.9e-11 Score=100.32 Aligned_cols=85 Identities=28% Similarity=0.415 Sum_probs=72.0
Q ss_pred CCcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc--CCCCCCEEEEECCEEcCCCCHH
Q psy2827 7 TGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA--GIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 7 ~~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a--GL~~GD~Il~InG~~v~~~s~~ 83 (373)
..+++|++.|+.. +|||++.++.+. ..+++|..|.++|||+++ ||++||+|++|||+++.++++.
T Consensus 14 ~~~~~v~l~k~~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~ 81 (119)
T 2cs5_A 14 DNLVLIRMKPDENGRFGFNVKGGYDQ------------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 81 (119)
T ss_dssp SCCEEEEECCCSSSCCSEEEEEEGGG------------TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHH
T ss_pred CCeEEEEEEeCCCCCcCEEEecccCC------------CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHH
Confidence 3568899999875 599999987432 123589999999999999 9999999999999999999999
Q ss_pred HHHHHHHhC----CCeEEEEEEec
Q psy2827 84 QVVELIKSG----GDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~----g~~v~l~V~r~ 103 (373)
++..+++.. +..+.++|.|.
T Consensus 82 ~~~~~~~~~~~~~~~~v~l~v~R~ 105 (119)
T 2cs5_A 82 QVVLFIKASCERHSGELMLLVRPN 105 (119)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECC
T ss_pred HHHHHHHhccccCCCEEEEEEEcc
Confidence 999999874 25899999874
No 127
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.26 E-value=4.2e-11 Score=95.12 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=66.2
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
.+.+.+.+...+|||.+.... ..+.|..|.+||||++|||++||+|++|||.++...+|+++...
T Consensus 18 ~~~l~l~~~~~g~G~~l~~~~---------------~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~ 82 (101)
T 3qik_A 18 AKRLLILPQEEDYGFDIEEKN---------------KAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESI 82 (101)
T ss_dssp EEEEEECCCSSSSSEEEEEET---------------TEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHH
T ss_pred cCeEEEEeCCCcccEEEEccC---------------CCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHH
Confidence 356778888889999998641 23479999999999999999999999999999975569999999
Q ss_pred HHh---CCCeEEEEEE
Q psy2827 89 IKS---GGDVLSLTVI 101 (373)
Q Consensus 89 i~~---~g~~v~l~V~ 101 (373)
++. .++++.|.|.
T Consensus 83 i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 83 LNQSFCSRRPLRLLVA 98 (101)
T ss_dssp HHHHHHTTCCEEEEEE
T ss_pred HHHhhccCCeEEEEEe
Confidence 986 5899998875
No 128
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.26 E-value=5.5e-11 Score=105.21 Aligned_cols=93 Identities=31% Similarity=0.566 Sum_probs=78.0
Q ss_pred CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
+...++|+|.|++.+|||++.++.+.+. . ...++++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus 3 ~~~~~~v~l~~~~~~lG~~i~~g~~~~~----~---~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~ 75 (196)
T 3gsl_A 3 SMEYEEITLERGNSGLGFSIAGGTDNPH----I---GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA 75 (196)
T ss_dssp CEEEEEEEEECBTTBSSEEEECCTTSCT----T---SSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CcEEEEEEEEECCCCCCEEEEcccCCcc----c---CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH
Confidence 3456889999999999999998754211 0 013456899999999999999 9999999999999999988999
Q ss_pred HHHHHHhCCCeEEEEEEecCc
Q psy2827 85 VVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~~ 105 (373)
....++..+..+.+++.|..+
T Consensus 76 ~~~~~~~~g~~v~l~v~r~~~ 96 (196)
T 3gsl_A 76 AVEALKEAGSIVRLYVMRRKP 96 (196)
T ss_dssp HHHHHHTSCSEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEEEecCC
Confidence 998888889999999988653
No 129
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.25 E-value=4.7e-11 Score=97.98 Aligned_cols=90 Identities=23% Similarity=0.439 Sum_probs=72.0
Q ss_pred CCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
.+...+.+.+.|. ..+|||++.++.+.. .++++|..|.++|||+++| |++||+|++|||+++.+++|
T Consensus 12 ~~~~~~~v~l~~~~~~~lG~~i~g~~~~~-----------~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~ 80 (119)
T 1x6d_A 12 QLDGIHVTILHKEEGAGLGFSLAGGADLE-----------NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTH 80 (119)
T ss_dssp SCTTEEEEEEECCTTSCCSEEEECCSSSS-----------CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCH
T ss_pred CCCCeEEEEEEeCCCCccCEEEeCCCCCC-----------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 3445677888886 568999998864321 2345899999999999999 99999999999999998889
Q ss_pred HHHHHHHHhC-CCeEEEEEEecCc
Q psy2827 83 KQVVELIKSG-GDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~~-g~~v~l~V~r~~~ 105 (373)
.++...++.. +..+.+++.|...
T Consensus 81 ~~~~~~l~~~~~~~~~l~v~R~~~ 104 (119)
T 1x6d_A 81 HDALAILRQAREPRQAVIVTRKLT 104 (119)
T ss_dssp HHHHHHHHHTTSSSEEEEEEECCC
T ss_pred HHHHHHHHhCCCCeEEEEEEcCCC
Confidence 9999999884 5556677777543
No 130
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.25 E-value=5.3e-11 Score=93.10 Aligned_cols=76 Identities=24% Similarity=0.521 Sum_probs=63.2
Q ss_pred CcEEEEEEcC--CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 8 GPREVQIAKS--DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 8 ~~r~v~l~r~--~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.++.+.+.+. ..+|||++.++ +|..|.++|||+++||++||+|++|||+++.+.++.++
T Consensus 11 ~~~~~~i~~~~~~~~lG~~~~~G-------------------~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~ 71 (90)
T 1y7n_A 11 NVTTVLIRRPDLRYQLGFSVQNG-------------------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKI 71 (90)
T ss_dssp SCEEEEEEESSTTSCCCEEEETT-------------------EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHH
T ss_pred CcceEEEEeCCCccccCeEecCC-------------------EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 3455555544 35799988432 58999999999999999999999999999987779999
Q ss_pred HHHHHhCCCeEEEEEEe
Q psy2827 86 VELIKSGGDVLSLTVIS 102 (373)
Q Consensus 86 ~~~i~~~g~~v~l~V~r 102 (373)
..+++..+..+.++|.+
T Consensus 72 ~~~l~~~g~~v~l~v~p 88 (90)
T 1y7n_A 72 VHILSNAVGEIHMKTMP 88 (90)
T ss_dssp HHHHHHCCEEEEEEEEC
T ss_pred HHHHHcCCCeEEEEEEE
Confidence 99999888899998864
No 131
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.25 E-value=4.9e-11 Score=98.45 Aligned_cols=91 Identities=25% Similarity=0.432 Sum_probs=73.6
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
..+++|++.|+. .+|||++.+....... ....++|..|.+++||+++| |++||+|++|||+++.++++++
T Consensus 14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~--------~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~ 85 (122)
T 1v5q_A 14 TETTEVVLTADPVTGFGIQLQGSVFATET--------LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 85 (122)
T ss_dssp EEEEEEEECCCSSSSSCEEEECCSCCSSS--------CSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHH
T ss_pred ceeEEEEEEeCCCCccCEEEecccccCCc--------CCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 356788888885 7899999876211100 01224799999999999999 9999999999999999888999
Q ss_pred HHHHHHh-C-CCeEEEEEEecCc
Q psy2827 85 VVELIKS-G-GDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~-~-g~~v~l~V~r~~~ 105 (373)
+.++++. . ++.+.|+|.|...
T Consensus 86 ~~~~l~~~~~g~~v~l~v~R~~~ 108 (122)
T 1v5q_A 86 ANQLLRDSSITSKVTLEIEFDVA 108 (122)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECC
T ss_pred HHHHHHhCCCCCeEEEEEEECCc
Confidence 9999987 4 8899999998543
No 132
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=99.24 E-value=1.7e-11 Score=114.37 Aligned_cols=88 Identities=28% Similarity=0.431 Sum_probs=76.5
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~ 82 (373)
....+++|+|.|++ .+|||+|.++.+. ..+++|..|.+||||++ +||++||+|++|||+++.++++
T Consensus 74 ~~~~~r~V~L~k~~~~glGf~I~gg~d~------------~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~ 141 (263)
T 1z87_A 74 LLLQRRRVTVRKADAGGLGISIKGGREN------------KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH 141 (263)
T ss_dssp TSCSSEEECCCTTTTCCCCCEEEEETTT------------TEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCH
T ss_pred CCCccEEEEEEeCCCCCEeEEEeeccCC------------CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCH
Confidence 34468999999985 7899999987432 12458999999999999 7999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEecC
Q psy2827 83 KQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.+++.+++..++.++|+|.|..
T Consensus 142 ~e~v~~l~~~g~~V~L~V~R~~ 163 (263)
T 1z87_A 142 DEAVQALKKTGKEVVLEVKYMK 163 (263)
T ss_dssp HHHHHHHHHCCSCCCEEEECCS
T ss_pred HHHHHHHhcCCCeEEEEEEeCc
Confidence 9999999998888999999854
No 133
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.24 E-value=4.7e-11 Score=99.42 Aligned_cols=94 Identities=28% Similarity=0.462 Sum_probs=76.3
Q ss_pred CCCCcEEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~ 82 (373)
....+++|.+.| +..+|||++.+..+... .+ ...+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus 12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~----~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~ 84 (129)
T 2dmz_A 12 SLFETYNVELVRKDGQSLGIRIVGYVGTSH----TG---EASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN 84 (129)
T ss_dssp CCEEEEEEEECCCTTCCCCEEEEEECCCSS----SC---CCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCH
T ss_pred CCCcEEEEEEEeCCCCCcCEEEEeecCCcc----cC---CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 344567788865 55789999998643211 01 12456899999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEecCc
Q psy2827 83 KQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++..+++..+..+.|+|.|...
T Consensus 85 ~~~~~~l~~~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 85 HDVVEVLRNAGQVVHLTLVRRKT 107 (129)
T ss_dssp HHHHHHHHHCCSSEEEEEEEESS
T ss_pred HHHHHHHHcCCCeEEEEEEeCCc
Confidence 99999999888999999998653
No 134
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.23 E-value=4.4e-11 Score=96.42 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=69.2
Q ss_pred EEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 10 REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 10 r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+|+|.| ...++||++.+. ..+++|..|.++|||+++| |++||+|++|||+++.+.++.++..
T Consensus 4 ~~v~L~k~~~~glG~~i~~~---------------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~ 68 (106)
T 2la8_A 4 FNVDLMKKAGKELGLSLSPN---------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA 68 (106)
T ss_dssp EEEEECCBSSSTTCCEEEEC---------------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHH
T ss_pred EEEEEEeCCCCccCEEEEeC---------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 4677874 457899998763 1245899999999999999 9999999999999999888999999
Q ss_pred HHHhCCCeEEEEEEecCcc
Q psy2827 88 LIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r~~~~ 106 (373)
.++..++.+.++|.|..+.
T Consensus 69 ~~~~~~~~v~l~v~R~~~~ 87 (106)
T 2la8_A 69 LFKGANGKVSMEVTRPKPG 87 (106)
T ss_dssp HHHSCBSCEEEEEEECCSC
T ss_pred HHhCCCCeEEEEEEeCCCC
Confidence 8888778899999986553
No 135
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.22 E-value=9.7e-11 Score=91.04 Aligned_cols=75 Identities=28% Similarity=0.403 Sum_probs=64.2
Q ss_pred EEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 11 EVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 11 ~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+++.+.. .+|||++.++ ++|..|.++|||+++| |++||+|++|||+++.+.+|+++.+
T Consensus 3 ~v~l~~~~~~~~~G~~~~~g------------------v~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~ 64 (88)
T 3e17_A 3 GVLLMKSRANEEYGLRLGSQ------------------IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARK 64 (88)
T ss_dssp EEEEECBTTBCCCCEEEEEE------------------EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEeCCCCCCCCEEEeCC------------------EEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 35666543 5799988664 4799999999999999 9999999999999998888999999
Q ss_pred HHHhCCCeEEEEEEec
Q psy2827 88 LIKSGGDVLSLTVISV 103 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r~ 103 (373)
+++..+..+.+++.+.
T Consensus 65 ~i~~~~~~v~L~v~~~ 80 (88)
T 3e17_A 65 LIEKSRGKLQLVVLRD 80 (88)
T ss_dssp HHHHTTTEEEEEECCC
T ss_pred HHHcCCCeEEEEEeCC
Confidence 9999888898888653
No 136
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.22 E-value=3.8e-11 Score=94.35 Aligned_cols=83 Identities=25% Similarity=0.339 Sum_probs=67.9
Q ss_pred EEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 10 REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 10 r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
.++++.+ ++.+|||++.++.+. ..+++|..|.++|||+++||++||+|++|||+++.++++.++...
T Consensus 6 ~~~~~~~~~~~~lG~~l~~g~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~ 73 (94)
T 1vb7_A 6 SGLTVDVAGPAPWGFRISGGRDF------------HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSK 73 (94)
T ss_dssp CCEEEEECSSSCCSBCCEEETTT------------TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEecCCCCccEEEecccCC------------CCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 3455543 456899999876331 224578999999999999999999999999999999888999999
Q ss_pred HHhCCCeEEEEEEecC
Q psy2827 89 IKSGGDVLSLTVISVS 104 (373)
Q Consensus 89 i~~~g~~v~l~V~r~~ 104 (373)
++..++.+.++|.|..
T Consensus 74 l~~~~~~v~l~v~R~g 89 (94)
T 1vb7_A 74 IRQSASPLRLQLDRSS 89 (94)
T ss_dssp HHTCCSSEEEEEECCC
T ss_pred HHhCCCcEEEEEEECC
Confidence 9986689999998753
No 137
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.22 E-value=2e-11 Score=101.58 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=71.0
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
....+.+.++..++||++.+. .++++|..|.++|||++|| |++||+|++|||.++.+.+|.++.
T Consensus 27 ~~~~~~l~k~~~glG~~i~~~---------------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~ 91 (126)
T 1wif_A 27 KVIQTKLTVGNLGLGLVVIQN---------------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFL 91 (126)
T ss_dssp CEEEEEEECCTTCCCCCEEEE---------------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHH
T ss_pred ceEEEEEecCCceEeEEEEcC---------------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence 556788899999999999774 2345799999999999999 999999999999999877799999
Q ss_pred HHHHh--CCCeEEEEEEec
Q psy2827 87 ELIKS--GGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~--~g~~v~l~V~r~ 103 (373)
.+++. .|+.++|+|.|.
T Consensus 92 ~~l~~~~~G~~v~l~V~R~ 110 (126)
T 1wif_A 92 KLLQNITIGTVLQIKAYRG 110 (126)
T ss_dssp HHHTSCCSSCEEEEEEESS
T ss_pred HHHhcCCCCCEEEEEEEEC
Confidence 99997 589999999885
No 138
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5e-11 Score=94.85 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~ 82 (373)
.+...+++++.+.+ .+|||++.++.+. ..+++|..|.++|||+++ ||++||+|++|||+++.+. +
T Consensus 6 ~~~~~~~~~v~~~~~~~~G~~~~gg~~~------------~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~ 72 (100)
T 2edp_A 6 SGGSFQYVPVQLQGGAPWGFTLKGGLEH------------CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-R 72 (100)
T ss_dssp CCCCCEEEEEECCSCSCCCCCEEEEGGG------------TEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-S
T ss_pred CCCCcEEEEEEECCCCCcCEEEeccCCC------------CCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-H
Confidence 45566778887654 5899999886432 123479999999999999 9999999999999999985 7
Q ss_pred HHHHHHHHhCCCeEEEEEEecC
Q psy2827 83 KQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
.++...++..++.+.|+|.|..
T Consensus 73 ~~~~~~~~~~~~~v~l~v~R~~ 94 (100)
T 2edp_A 73 QEALILIKGSFRILKLIVRRRN 94 (100)
T ss_dssp HHHHHHHHTCCSSCEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEEEeCC
Confidence 8889999887889999998854
No 139
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.20 E-value=2.3e-10 Score=92.74 Aligned_cols=83 Identities=29% Similarity=0.496 Sum_probs=71.2
Q ss_pred EEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI-RKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 10 r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL-~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+|++.|+. .++||++.+..+ .++++|..|.++|||+++|+ ++||+|++|||.++.+++++++..
T Consensus 3 ~~v~l~~~~~~glG~~~~~~~~-------------~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~ 69 (112)
T 1qau_A 3 ISVRLFKRKVGGLGFLVKERVS-------------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69 (112)
T ss_dssp EEEEEECBTTTBTSEEEEECSS-------------SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCceeEEEEecCC-------------CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 568888874 789999987632 13458999999999999997 999999999999999999999999
Q ss_pred HHHh-CCCeEEEEEEecCc
Q psy2827 88 LIKS-GGDVLSLTVISVSP 105 (373)
Q Consensus 88 ~i~~-~g~~v~l~V~r~~~ 105 (373)
+++. .|+.+.+++.|...
T Consensus 70 ~l~~~~g~~v~l~v~R~g~ 88 (112)
T 1qau_A 70 VLRGIASETHVVLILRGPE 88 (112)
T ss_dssp HHHHSCSSSEEEEEEECCT
T ss_pred HHHhCCCCcEEEEEEeCCc
Confidence 9987 67899999998543
No 140
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.19 E-value=1.6e-10 Score=94.43 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=70.9
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..++.|++.+...++||++.+..+ .+++|..|.++|||+++||++||+|++|||+++.++++.+..
T Consensus 18 ~~~~~v~l~~~~~~lG~~~~~~~~--------------~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~ 83 (117)
T 1uit_A 18 EEPRHVKVQKGSEPLGISIVSGEK--------------GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQAR 83 (117)
T ss_dssp CCCEEEEEECSSCCCCEEEEECTT--------------SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHH
T ss_pred CCCEEEEEEeCCCCccEEEEccCC--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 356789999998999999987632 245899999999999999999999999999999997777766
Q ss_pred HHHHhCCCeEEEEEEecCc
Q psy2827 87 ELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~ 105 (373)
..++..++.+.++|.|...
T Consensus 84 ~~~~~~g~~v~l~v~r~~~ 102 (117)
T 1uit_A 84 LIIGQQCDTITILAQYNPH 102 (117)
T ss_dssp HHTTSCCSEEEEEECCCSC
T ss_pred HHHHcCCCeEEEEEEECCc
Confidence 5555678999999987543
No 141
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=4.5e-11 Score=97.70 Aligned_cols=88 Identities=26% Similarity=0.411 Sum_probs=72.0
Q ss_pred CCCCcEEEEEEcCCC---CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827 5 QQTGPREVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~---g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s 81 (373)
.|..++.+++.|.+. +|||++.+....+ ..+++|..|.++|||++|||++||+|++|||+++.+++
T Consensus 12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~-----------~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~ 80 (114)
T 2d8i_A 12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDG-----------IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN 80 (114)
T ss_dssp SCCEEEEEEEECSCTTTCCCCCEEEEEEETT-----------EEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCC
T ss_pred ccCceEEEEEEeCCCCccccCEEEEecCcCC-----------cCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcC
Confidence 355678999999875 7999998743210 02358999999999999999999999999999999988
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
|.++..+++. ..+.|+|.|...
T Consensus 81 ~~~~~~~l~~--~~v~l~v~R~p~ 102 (114)
T 2d8i_A 81 SSMLKDFLSQ--PSLGLLVRTYPE 102 (114)
T ss_dssp HHHHHHHHTS--SEEEEEEEECCC
T ss_pred HHHHHHHHhC--CcEEEEEEECCC
Confidence 9999888875 489999988543
No 142
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.18 E-value=2.2e-10 Score=102.50 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=76.6
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCC--CC
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG--AT 81 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~--~s 81 (373)
.+....++++.|+..+|||++.++.+.. ..++++|..|.++|||+++| |++||+|++|||+++.+ .+
T Consensus 15 ~~~~~~~v~~~~~~~~lG~~i~~g~~~~----------~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~ 84 (206)
T 3r0h_A 15 KPNKKILIELKVEKKPMGVIVCGGKNNH----------VTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT 84 (206)
T ss_dssp CTTSCEEEEEECTTSCCCEEEECCSSSS----------CCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSC
T ss_pred CCCCEEEEEEEeCCCCcCEEEecccCCC----------CCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccC
Confidence 3456788999999999999999874321 11456899999999999998 99999999999999999 89
Q ss_pred HHHHHHHHHhCCCe-EEEEEEecCc
Q psy2827 82 HKQVVELIKSGGDV-LSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~~g~~-v~l~V~r~~~ 105 (373)
|.++...++..+.. +.++|.|...
T Consensus 85 ~~~~~~~~~~~~~~~v~l~v~R~~~ 109 (206)
T 3r0h_A 85 TLKVHQLFHTTYEKAVTLTVFRADP 109 (206)
T ss_dssp HHHHHHHHHSCCSSEEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCceEEEEEeccc
Confidence 99999999886655 9999988543
No 143
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.17 E-value=5.8e-11 Score=94.51 Aligned_cols=89 Identities=36% Similarity=0.515 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEEEcC--CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827 3 STQQTGPREVQIAKS--DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA 80 (373)
Q Consensus 3 ~~~~~~~r~v~l~r~--~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~ 80 (373)
+..|...+++++.|. ..+|||++.+..+. ..+++|..|.++|||+++||++||+|++|||+++.++
T Consensus 3 ~~~~~~~~~v~l~~~~~~~~lG~~~~~~~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~ 70 (101)
T 1uez_A 3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEH------------GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARV 70 (101)
T ss_dssp CCCSCCCEEECCCCCCTTTCSSEEEEECTTT------------TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSC
T ss_pred CCCCCccEEEEEEECCCCCcccEEEeCCCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCc
Confidence 456788899999884 46899999876321 1345899999999999999999999999999999997
Q ss_pred CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 81 THKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 81 s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
++.++...++ .++.+.++|.|..
T Consensus 71 ~~~~~~~~~~-~~~~v~l~v~R~g 93 (101)
T 1uez_A 71 THAEAVKALK-GSKKLVLSVYSAG 93 (101)
T ss_dssp CHHHHHHHSS-SSSSCCEEECCCC
T ss_pred CHHHHHHhhc-CCCeEEEEEEECC
Confidence 7766555543 3567888887643
No 144
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.16 E-value=3.1e-10 Score=93.99 Aligned_cols=82 Identities=24% Similarity=0.382 Sum_probs=67.2
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.++.+.+.+ ..+|||++.++.+ .+++|..|.++|||++|||++||+|++|||.++.+++++++..
T Consensus 29 ~~~~~~~~~-~~~lG~~l~~~~~--------------~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~ 93 (124)
T 3tsv_A 29 SMKLVKFRK-GDSVGLRLAGGND--------------VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVL 93 (124)
T ss_dssp CCEEEEEEC-SSCCCEEEEECTT--------------SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHH
T ss_pred CeEEEEcCC-CCceeEEEecCCC--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 334444444 4789999987522 3458999999999999999999999999999999988899999
Q ss_pred HHHh--CCCeEEEEEEecC
Q psy2827 88 LIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 88 ~i~~--~g~~v~l~V~r~~ 104 (373)
.+.+ .++.+.++|.|..
T Consensus 94 ~l~~~~~g~~v~l~v~R~~ 112 (124)
T 3tsv_A 94 FLLDLPKGEEVTILAQKKK 112 (124)
T ss_dssp HHHHSCTTCEEEEEEEECH
T ss_pred HHHhcCCCCEEEEEEEECC
Confidence 8885 6899999998854
No 145
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.16 E-value=1.1e-10 Score=96.80 Aligned_cols=89 Identities=27% Similarity=0.455 Sum_probs=76.0
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI-RKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL-~~GD~Il~InG~~v~~~s~ 82 (373)
.+..++.|++.++. .++||++.+..+ ..+++|..|.++|||+++|+ ++||+|++|||+++.++++
T Consensus 5 ~~~~~~~v~l~~~~~~glG~~~~~~~~-------------~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~ 71 (127)
T 1b8q_A 5 IEPNVISVRLFKRKVGGLGFLVKERVS-------------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY 71 (127)
T ss_dssp CCCCSEEEEEECTTTSCCSCCEEECTT-------------SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCH
T ss_pred cCCceEEEEEEeCCCCcEeEEEEecCC-------------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 34567889999987 799999987632 13457999999999999998 9999999999999999999
Q ss_pred HHHHHHHHh-CCCeEEEEEEecCcc
Q psy2827 83 KQVVELIKS-GGDVLSLTVISVSPE 106 (373)
Q Consensus 83 ~~~~~~i~~-~g~~v~l~V~r~~~~ 106 (373)
.++..+++. .|+.+.+++.|....
T Consensus 72 ~~~~~~l~~~~g~~v~l~v~R~g~~ 96 (127)
T 1b8q_A 72 DSALEVLRGIASETHVVLILRGPEG 96 (127)
T ss_dssp HHHHHHHHSCCSSCEEEEEECCCCS
T ss_pred HHHHHHHHhCCCCeEEEEEEeCCce
Confidence 999999987 678999999986543
No 146
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.15 E-value=3.7e-10 Score=87.70 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=64.6
Q ss_pred EEEEEEcCCC---CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 10 REVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 10 r~v~l~r~~~---g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..+.+.+.+. ++||++... ..+++|..|.++|||+++||++||+|++|||.++.+.++.++.
T Consensus 5 ~~~~~~~~~~~~~~lG~~~~~~---------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~ 69 (90)
T 2eaq_A 5 MRISINQTPGKSLDFGFTIKWD---------------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWE 69 (90)
T ss_dssp EEEEEECCTTCSSCCSEEEEEE---------------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHH
T ss_pred eEEEEEecCCCCCcccEEEEec---------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHH
Confidence 4566666653 599988754 2345899999999999999999999999999999555599999
Q ss_pred HHHHh--CCCeEEEEEEec
Q psy2827 87 ELIKS--GGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~--~g~~v~l~V~r~ 103 (373)
.+++. .++.+.++|.|.
T Consensus 70 ~~l~~~~~g~~v~l~v~R~ 88 (90)
T 2eaq_A 70 EAMAKAQETGHLVMDVRRY 88 (90)
T ss_dssp HHHHHHHHHTEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEEEeC
Confidence 99985 588999999874
No 147
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.15 E-value=3.5e-10 Score=100.97 Aligned_cols=90 Identities=29% Similarity=0.458 Sum_probs=75.0
Q ss_pred CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCC
Q psy2827 4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGAT 81 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s 81 (373)
+....++.|++.|.. .+|||++.++.+. ..+++|..|.++|||++| ||++||+|++|||+++.+++
T Consensus 3 ~~~~~~~~v~l~~~~~~~lG~~i~~~~~~------------~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~ 70 (200)
T 2qt5_A 3 GSFKGSTVVELMKKEGTTLGLTVSGGIDK------------DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFR 70 (200)
T ss_dssp -CCEEEEEEEEECCTTCCCCEEEECCTTS------------SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSC
T ss_pred cccCCCEEEEEEeCCCCCCCEEEecccCC------------CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence 345567889998764 6899999986432 123479999999999999 89999999999999999988
Q ss_pred HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 82 HKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 82 ~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+.++..+++..++.+.++|.|..+
T Consensus 71 ~~~~~~~~~~~g~~v~l~v~R~~~ 94 (200)
T 2qt5_A 71 HDEIISLLKNVGERVVLEVEYELP 94 (200)
T ss_dssp HHHHHHHHHTCCSEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCeEEEEEeccCC
Confidence 899999998888999999988543
No 148
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.14 E-value=3.3e-10 Score=92.09 Aligned_cols=86 Identities=24% Similarity=0.468 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~ 83 (373)
...+++++++.+. ..+|||++.+..+. ..+++|..|.+++||+++||++||+|++|||+++.++++.
T Consensus 12 ~~~~~~~v~~~~~~~~~lG~~l~~~~~~------------~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~ 79 (114)
T 1x5n_A 12 RENKEKKVFISLVGSRGLGCSISSGPIQ------------KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK 79 (114)
T ss_dssp CCCSSEEEEECCCSSCCCCEEEEECCSS------------SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTT
T ss_pred CCCCcEEEEEEEcCCCceeEEEeecCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 3456788988654 47899999876321 2346899999999999999999999999999999998777
Q ss_pred HHHHHHHhCCCeEEEEEEec
Q psy2827 84 QVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~ 103 (373)
++...++.. ..+.++|.|.
T Consensus 80 ~~~~~~~~~-~~v~l~v~r~ 98 (114)
T 1x5n_A 80 EAVNVLKSS-RSLTISIVAA 98 (114)
T ss_dssp HHHHHHHHC-SSEEEEECSS
T ss_pred HHHHHHhcC-CeEEEEEEcC
Confidence 788888775 5788888775
No 149
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.14 E-value=7e-10 Score=86.36 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=65.0
Q ss_pred CcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 8 GPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 8 ~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
++.++++.+.. ..|||.+..+ ++|..|.++|||+++| |++||+|++|||.++.++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~g~~~~~g------------------v~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~ 63 (92)
T 3cyy_A 2 KPTKVTLVKSAKNEEYGLRLASH------------------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD 63 (92)
T ss_dssp CCEEEEEECSSTTSCCCEEEEEE------------------EEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHH
T ss_pred CcEEEEEEeCCCCCCCCEEEeCC------------------EEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH
Confidence 45677777654 4688877532 4799999999999999 9999999999999999667999
Q ss_pred HHHHHHhCCCeEEEEEEecC
Q psy2827 85 VVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 85 ~~~~i~~~g~~v~l~V~r~~ 104 (373)
+..+++..+..+.++|.|.+
T Consensus 64 ~~~~l~~~~~~v~l~v~r~g 83 (92)
T 3cyy_A 64 AKTLIERSKGKLKMVVQRDE 83 (92)
T ss_dssp HHHHHHTTTTEEEEEEEC--
T ss_pred HHHHHHcCCCcEEEEEEeCC
Confidence 99999986678999998754
No 150
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.75 E-value=4.3e-12 Score=103.45 Aligned_cols=85 Identities=29% Similarity=0.511 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCH
Q psy2827 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATH 82 (373)
Q Consensus 5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~ 82 (373)
....+++|.+.|.. .+|||++.++.+. ..+++|..|.++|||++ +||++||+|++|||.++.+.++
T Consensus 24 ~~~~~~~v~l~k~~~~glG~~l~~g~~~------------~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~ 91 (112)
T 2lob_A 24 YFQGIRKVLLLKEDHEGLGISITGGKEH------------GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH 91 (112)
Confidence 34567889998876 6899999876432 12347999999999999 9999999999999999988789
Q ss_pred HHHHHHHHhCCCeEEEEEE
Q psy2827 83 KQVVELIKSGGDVLSLTVI 101 (373)
Q Consensus 83 ~~~~~~i~~~g~~v~l~V~ 101 (373)
.++...++..+..++++|.
T Consensus 92 ~~~~~~l~~~~~~v~l~V~ 110 (112)
T 2lob_A 92 KEAVTILSQQRGEIEFEVV 110 (112)
Confidence 9999999886666777764
No 151
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.12 E-value=5.1e-10 Score=98.90 Aligned_cols=91 Identities=34% Similarity=0.492 Sum_probs=74.0
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
...++++.+...++||++.+...... .+...+++|..|.++|||+++| |++||+|++|||+++.+++|.++.
T Consensus 100 ~~~~v~l~~~~~~lG~~~~~~~~~~~-------~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~ 172 (196)
T 3gsl_A 100 KVMEIKLIKGPKGLGFSIAGGVGNQH-------IPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 172 (196)
T ss_dssp EEEEEEEEEBTTBSCEEEEESBTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHH
T ss_pred ccEEEEEecCCCCceEEEEccCCCcC-------CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHH
Confidence 34567777888899999987643210 1112456899999999999999 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEecCc
Q psy2827 87 ELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~ 105 (373)
..+++.++.+.|+|.|...
T Consensus 173 ~~l~~~~~~v~l~v~R~~~ 191 (196)
T 3gsl_A 173 AALKNTYDVVYLKVAKPSN 191 (196)
T ss_dssp HHHHSCCEEEEEEEEEESC
T ss_pred HHHHcCCCeEEEEEeCCCC
Confidence 9999888999999988543
No 152
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.12 E-value=6.3e-11 Score=94.76 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=69.8
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.++++.+ ++..+|||++.++.+. ..+++|..|.++|||++|||++||+|++|||+++.++++.++..
T Consensus 5 ~~~~v~~-~~~~~lG~~l~~g~~~------------~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~ 71 (103)
T 1v5l_A 5 SSGNVVL-PGPAPWGFRLSGGIDF------------NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQD 71 (103)
T ss_dssp CCBCCEE-ESSSCCSBCCEEETTT------------TEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHH
T ss_pred CEEEEEE-cCCCCcCEEEeccccC------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 3455555 4557899999876432 12347899999999999999999999999999999999999999
Q ss_pred HHHhCCCeEEEEEEecCc
Q psy2827 88 LIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r~~~ 105 (373)
+++..++.+.++|.|...
T Consensus 72 ~l~~~g~~v~l~v~R~g~ 89 (103)
T 1v5l_A 72 RIKAASYQLCLKIDRAET 89 (103)
T ss_dssp HHTTCCSEEECEECCCTT
T ss_pred HHHhCCCeEEEEEEECCe
Confidence 998888999999987543
No 153
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.11 E-value=9.7e-11 Score=106.32 Aligned_cols=85 Identities=38% Similarity=0.575 Sum_probs=73.1
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~ 84 (373)
...++|.|+|.++..||||++.+..+ .++++|..|.+||||+++||++||+|++|||+++.++++.+
T Consensus 6 ~~~~~r~v~l~k~~~glG~~l~~~~~-------------~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~d 72 (216)
T 2krg_A 6 TMLRPRLCTMKKGPSGYGFNLHSDKS-------------KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72 (216)
T ss_dssp TTCCCEEEEEECCSSSSCEEECCCSS-------------SCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHH
T ss_pred cccceEEEEEEeCCCCceEEEEecCC-------------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 45678999999999999999987632 23457999999999999999999999999999999777999
Q ss_pred HHHHHHhCCCeE-EEEEEe
Q psy2827 85 VVELIKSGGDVL-SLTVIS 102 (373)
Q Consensus 85 ~~~~i~~~g~~v-~l~V~r 102 (373)
+..+++..|..+ .++|.|
T Consensus 73 l~~~l~~~g~~v~~l~V~R 91 (216)
T 2krg_A 73 VVSAIRAGGDETKLLVVDR 91 (216)
T ss_dssp HHHHHHHHCSEEEEEECCH
T ss_pred HHHHHHhcCCeEEEEEEEE
Confidence 999998767788 787765
No 154
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=99.10 E-value=5.2e-10 Score=99.64 Aligned_cols=91 Identities=25% Similarity=0.427 Sum_probs=75.0
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
...++|+|.|+. .+|||++.++.+... ...++++|..|.++|||++|| |++||+|++|||+++.+.+|.+
T Consensus 5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~--------~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~ 76 (196)
T 1p1d_A 5 TETTEVVLTADPVTGFGIQLQGSVFATE--------TLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 76 (196)
T ss_dssp CEEEEEEEECBTTTBCCCEEEECSSCSS--------SCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHH
T ss_pred cEEEEEEEEeCCCCccCEEEeCCcCCCC--------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 356789999986 789999998743211 012345899999999999999 9999999999999999777999
Q ss_pred HHHHHHhC--CCeEEEEEEecCc
Q psy2827 85 VVELIKSG--GDVLSLTVISVSP 105 (373)
Q Consensus 85 ~~~~i~~~--g~~v~l~V~r~~~ 105 (373)
+..+++.. +..+.+++.|...
T Consensus 77 ~~~~l~~~~~g~~v~l~v~R~~~ 99 (196)
T 1p1d_A 77 ANQLLRDSSITSKVTLEIEFDVA 99 (196)
T ss_dssp HHHHHHTCCSSSEEEEEEEECSC
T ss_pred HHHHHHhCCCCCeEEEEEEecCC
Confidence 99999984 8899999988653
No 155
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.06 E-value=2.2e-09 Score=89.07 Aligned_cols=86 Identities=31% Similarity=0.467 Sum_probs=68.5
Q ss_pred CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
+++++++.... .++||++.+... +..+++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus 20 ~~~~v~v~~~~~~~lG~~~~~~~~------------~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~ 87 (128)
T 1uf1_A 20 DEKKVNLVLGDGRSLGLTIRGGAE------------YGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAV 87 (128)
T ss_dssp SEEEEEEECCSSCCCCEEEECCTT------------TTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHH
T ss_pred cEEEEEEEECCCCccCEEEECccc------------CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 55677777654 579999877421 12245899999999999999999999999999999998888888
Q ss_pred HHHHhCCCeEEEEEEecCcc
Q psy2827 87 ELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~~~~ 106 (373)
..++. ++.+.++|.|....
T Consensus 88 ~~~~~-~~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 88 RLLKS-SRHLILTVKDVGRL 106 (128)
T ss_dssp HHHTT-CSEEEEEEECCSCC
T ss_pred HHHhc-CCeEEEEEEECCcc
Confidence 77766 56899999886543
No 156
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.05 E-value=2e-09 Score=93.32 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=67.6
Q ss_pred CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827 7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV 85 (373)
Q Consensus 7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~ 85 (373)
.++|+|++.|+. .++||++... ..+++|..|.++|||++|||++||+|++|||+++.+++.+..
T Consensus 3 ~~~r~v~l~k~~~~~lG~~~~~~---------------~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~ 67 (166)
T 1w9e_A 3 MDPREVILCKDQDGKIGLRLKSI---------------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKA 67 (166)
T ss_dssp CCCEEEEEECCTTSCCSEEEEEE---------------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHH
T ss_pred CCCEEEEEEeCCCCcEeEEEEeC---------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence 578999999976 4799999875 134589999999999999999999999999999999665556
Q ss_pred HHHHHh-CCCeEEEEEEe
Q psy2827 86 VELIKS-GGDVLSLTVIS 102 (373)
Q Consensus 86 ~~~i~~-~g~~v~l~V~r 102 (373)
..+++. .++.+.+++.+
T Consensus 68 ~~~~~~~~~~~v~l~vr~ 85 (166)
T 1w9e_A 68 HKVLKQAFGEKITMTIRD 85 (166)
T ss_dssp HHHHHHCCSSEEEEEEEC
T ss_pred HHHHhcCCCCEEEEEEEc
Confidence 666766 57799999944
No 157
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=99.02 E-value=6.4e-10 Score=109.56 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=98.2
Q ss_pred CCCceEEEEEEecCCHHHHHHHhc--cccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC---CceEE
Q psy2827 222 PDREVITVSVRKSATADEVYASAV--PKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS---ATCLC 296 (373)
Q Consensus 222 PDGg~i~ie~~~~~~~~~~~~~~~--~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~---~~~~~ 296 (373)
|||+..+|.+..+.++.+++..++ .++|+ .+....+|+|++....+-..++.+.+.|..-.++++.+.. ...+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~-~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~ 113 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGP-NIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYD 113 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCS-SCCCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHSTTTSCGGGEEEE
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCC-CcCccceEEEEEEECCCCceEECCCCCcHHHHHhhhhhccCCCceEEE
Confidence 899999999999999999999999 78998 6667889999987533223344555555332334554332 22488
Q ss_pred EEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCC-ccch-hhHHHHHHHHhc
Q psy2827 297 IRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQ-IRAE-DRLYELKALQDA 349 (373)
Q Consensus 297 lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~-~~~~-~~~~~L~~lq~~ 349 (373)
||+.|| |++...|..+|+++++|||.|..+|+.+|+ ..++ |...+|++|+-|
T Consensus 114 fRvrF~-p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~~~~~e~al~LAaL~~q 167 (392)
T 4eku_A 114 LQIRYL-PEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELR 167 (392)
T ss_dssp EEECSC-CTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred EEEEEE-cCCHHHhhhcChHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999987 888888887799999999999999999998 3455 889999999876
No 158
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.02 E-value=1.4e-09 Score=109.20 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=72.8
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL 88 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~ 88 (373)
+|.|++.|+ .+|||++.++.. .+++|..|.+||||+++||++||+|++|||.++.+++++++..+
T Consensus 2 ~r~V~l~k~-~~lG~~i~gg~~--------------~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~ 66 (468)
T 3shw_A 2 MKLVKFRKG-DSVGLRLAGGND--------------VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLF 66 (468)
T ss_dssp EEEEEEECC-SSCCEEEEEETT--------------TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred ceEEEEecC-CccceEEEccCc--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 688999997 889999988632 34689999999999999999999999999999999999999999
Q ss_pred HHh--CCCeEEEEEEecC
Q psy2827 89 IKS--GGDVLSLTVISVS 104 (373)
Q Consensus 89 i~~--~g~~v~l~V~r~~ 104 (373)
++. +|..++|+|.+.+
T Consensus 67 L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 67 LLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp HHHSCTTSEEEEEEEECH
T ss_pred HHhcCCCCEEEEEEEECC
Confidence 998 7899999999854
No 159
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=9.6e-10 Score=90.88 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=69.5
Q ss_pred CcEEEEEEcCCC--CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827 8 GPREVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ 84 (373)
Q Consensus 8 ~~r~v~l~r~~~--g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~ 84 (373)
..+.+++.+.+. ++||++....... ...+++|..|.++|||+++| |++||+|++|||+++.+ +.+
T Consensus 19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~----------~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~ 86 (124)
T 1wh1_A 19 ELEEVDLYRMNSQDKLGLTVCYRTDDE----------DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REE 86 (124)
T ss_dssp EECCBCCCCSSTTCCCCEEEECCCCCS----------SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHH
T ss_pred eEEEEEEEecCCCCcccEEEEecCCCC----------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHH
Confidence 344566666654 7999998753210 12456899999999999999 99999999999999998 999
Q ss_pred HHHHHHh-CCCeEEEEEEecCcc
Q psy2827 85 VVELIKS-GGDVLSLTVISVSPE 106 (373)
Q Consensus 85 ~~~~i~~-~g~~v~l~V~r~~~~ 106 (373)
+..+++. .+..+.|+|.|....
T Consensus 87 ~~~~l~~~~g~~v~l~v~R~g~~ 109 (124)
T 1wh1_A 87 AVALLTSEENKNFSLLIARPELQ 109 (124)
T ss_dssp HHHHHTCSSCCSCCEEEEECSSC
T ss_pred HHHHHHhCCCCEEEEEEEECCEE
Confidence 9999987 588999999986543
No 160
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.01 E-value=2.1e-09 Score=88.19 Aligned_cols=93 Identities=25% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEEcCC----CCccEEEEecccCCCccccccccccCCceEEEEecC--CCHHHHcCCCCCCEEEEECCEEc
Q psy2827 4 TQQTGPREVQIAKSD----TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLA--GGAAEKAGIRKGDRILAVNNVNV 77 (373)
Q Consensus 4 ~~~~~~r~v~l~r~~----~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~--gspA~~aGL~~GD~Il~InG~~v 77 (373)
+....|++|++.+-+ ..+||.+...... .....+++|..|.+ ++||++|||++||+|++|||+++
T Consensus 8 ~~~~~~~~v~l~~~~~~~~g~~G~~v~l~~~~---------~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v 78 (118)
T 2yub_A 8 VQDQLPYSVTLISMPATTECRRGFSVTVESAS---------SNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPV 78 (118)
T ss_dssp CSCCSCCEEEEEEECSCSSSSCSSEEEEECTT---------SSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBT
T ss_pred chhcCCceeEEeccCCccCCCceEEEEecccc---------ccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEEC
Confidence 444567888888632 2366666533110 11134668999999 99999999999999999999999
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 78 EGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 78 ~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++++.++...++..++.+.++|.|...
T Consensus 79 ~~~~~~dl~~~l~~~g~~v~l~v~R~g~ 106 (118)
T 2yub_A 79 RTLRVEEVEDAIKQTSQTLQLLIEHDPV 106 (118)
T ss_dssp TTSCHHHHHHHHHCCSSCEEEEEEECSS
T ss_pred CCcCHHHHHHHHHhCCCEEEEEEEECCE
Confidence 9966699999998777889999988544
No 161
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.00 E-value=2.5e-09 Score=95.63 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=56.2
Q ss_pred CceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827 45 PLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~~ 106 (373)
.+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..++.+.|+|.|..+.
T Consensus 136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~~ 198 (206)
T 3r0h_A 136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPT 198 (206)
T ss_dssp SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECCC
T ss_pred ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence 346899999999999999 99999999999999998889999999998888999999986553
No 162
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.00 E-value=5.1e-09 Score=79.16 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=50.8
Q ss_pred eEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2827 47 QHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102 (373)
Q Consensus 47 ~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r 102 (373)
++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.+++.|
T Consensus 23 v~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R 79 (81)
T 2rcz_A 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR 79 (81)
T ss_dssp EEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC
T ss_pred EEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEe
Confidence 4799999999999999 9999999999999999767999999998865688888876
No 163
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.00 E-value=1.7e-09 Score=102.41 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=95.8
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCCc
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASAT 293 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~~ 293 (373)
++.+.+.|||| .+.+++....++.++++.++.++||. . ..+|+||.....+ ....++.+.|.. -|........
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e--~~~FgL~~~~~~~-~~~wLd~~~~l~--~q~~~~~~~~ 73 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-E--VWFFGLQYQDTKG-FSTWLKLNKKVT--AQDVRKESPL 73 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-C--GGGEEEEEEBTTS-CEEECCSSSBGG--GSCBCCCSSE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-C--cceeEEEEECCCC-ceeecccccCHH--hhccCCCCCE
Confidence 36789999998 67899999999999999999999993 2 3699999864322 233445555532 1111112233
Q ss_pred eEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827 294 CLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS 350 (373)
Q Consensus 294 ~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~ 350 (373)
++.+|+.||.+..+..| . |+++.+|+|.|+.+||.+|++.++ +.+.+|+||+-|-
T Consensus 74 ~l~fr~kf~~~~~~~~l-~-~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~q~ 129 (294)
T 1ef1_A 74 LFKFRAKFYPEDVSEEL-I-QDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQS 129 (294)
T ss_dssp EEEEEESSCCSCHHHHC-C-SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECCChHHhh-c-cHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHH
Confidence 58899999955444344 5 699999999999999999999987 8999999998753
No 164
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=99.00 E-value=2.1e-09 Score=95.32 Aligned_cols=79 Identities=25% Similarity=0.353 Sum_probs=65.1
Q ss_pred CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEE
Q psy2827 19 TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98 (373)
Q Consensus 19 ~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l 98 (373)
.||||+|.|+.+.-+.. ......+++|..|.++|||++ ||++||+|++|||+++.+.++.++...++..+..+.|
T Consensus 2 ~g~Gf~i~gg~~~~~~~----~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l 76 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVEL 76 (195)
T ss_dssp CCSSEEEEECTTSCCCS----SCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred CcccEEEECCcCCCCCc----cccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence 58999999985421000 011234678999999999999 9999999999999999999999999999987789999
Q ss_pred EEEe
Q psy2827 99 TVIS 102 (373)
Q Consensus 99 ~V~r 102 (373)
+|.|
T Consensus 77 ~v~r 80 (195)
T 2qbw_A 77 IIVR 80 (195)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
No 165
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=98.98 E-value=9.2e-10 Score=105.78 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=101.2
Q ss_pred eEEEEEcCCCceEEEEEEe--cCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc-----
Q psy2827 215 VDIKILLPDREVITVSVRK--SATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY----- 287 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~--~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~----- 287 (373)
.-+.++||||+...+++.. ..++.++. ..+|| ......+|+||.+.. .....|.+.+.|+.. +..+
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL-~~~~~~~FaL~~~~~-~~e~~L~~~~~~~d~-~~~W~~~l~ 78 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRL-SQETQQYFTIWICSE-NLSLQLKPYHKPLQH-VRDWPEILA 78 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSC-CTTGGGGEEEEEECS-SCEEECCTTCCHHHH-HHTHHHHHH
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCc-CccccCeeEEEEECC-ccccccCccccHHHH-HHHHHHHHH
Confidence 5689999999999999998 77877774 55888 777889999998854 345668888888642 2211
Q ss_pred --c---CC-CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccc
Q psy2827 288 --S---TA-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASR 351 (373)
Q Consensus 288 --~---~~-~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~ 351 (373)
+ .. ....+.+|+.+|-|.+....+. |+++.+++|.|+..||.+|++.|+ +.+.+|+||+-|-.
T Consensus 79 ~~~~~~~~~~~p~l~~rr~~f~~~~~~~~~~-d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~q~e 148 (322)
T 4dxa_B 79 ELTNLDPQRETPQLFLRRDVRLPLEVEKQIE-DPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIV 148 (322)
T ss_dssp HHCSCCCCCCCCEEEEEECTTCCHHHHTTCC-CHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCceEEEEEEeeccccccccccc-CHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHHHHHHHH
Confidence 1 11 2235899999999966655567 899999999999999999999987 89999999997633
No 166
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.97 E-value=3.1e-09 Score=104.73 Aligned_cols=84 Identities=25% Similarity=0.390 Sum_probs=72.2
Q ss_pred CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
..++.|.+.+++ ++||++.++.. .+++|..|.+||||++|||++||+|++|||.++.+++++++.
T Consensus 8 ~~~~~v~~~k~~-~lG~~i~gg~~--------------~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~ 72 (391)
T 3tsz_A 8 PSMKLVKFRKGD-SVGLRLAGGND--------------VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 72 (391)
T ss_dssp -CEEEEEEECCS-SCCEEEEEETT--------------TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHH
T ss_pred CCcEEEEeecCC-ceeEEEEecCC--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence 355778888875 79999988632 346899999999999999999999999999999999999999
Q ss_pred HHHHh--CCCeEEEEEEecCc
Q psy2827 87 ELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 87 ~~i~~--~g~~v~l~V~r~~~ 105 (373)
..++. .|+.++++|.|...
T Consensus 73 ~~l~~~~~g~~v~l~v~r~~~ 93 (391)
T 3tsz_A 73 LFLLDLPKGEEVTILAQKKKD 93 (391)
T ss_dssp HHHHHSCTTSEEEEEEEECHH
T ss_pred HHHHhhcCCCeEEEEEeeCCc
Confidence 99995 78999999998543
No 167
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.96 E-value=2.7e-09 Score=113.06 Aligned_cols=94 Identities=30% Similarity=0.541 Sum_probs=78.9
Q ss_pred CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
....+++|+|.|+..||||+|.|+.+.+.. ...++++|..|.+||||+++| |++||+|++|||+++.++++.
T Consensus 56 ~~~~~~~v~l~k~~~glGf~i~gg~~~~~~-------~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~ 128 (721)
T 2xkx_A 56 GEMEYEEITLERGNSGLGFSIAGGTDNPHI-------GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128 (721)
T ss_pred CCceEEEEEEEeCCCCCCEEEeCCcCCccc-------CCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence 345678999999999999999987542110 013456899999999999999 999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEecCc
Q psy2827 84 QVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 84 ~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
++..+++..|..+.++|.|..+
T Consensus 129 ~~~~~l~~~g~~v~l~v~R~~~ 150 (721)
T 2xkx_A 129 AAVEALKEAGSIVRLYVMRRKP 150 (721)
T ss_pred HHHHHhhccccccceEEEeccc
Confidence 9999998888899999987654
No 168
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.95 E-value=4.7e-09 Score=102.72 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=99.9
Q ss_pred CccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc---ceeeccCcCCCCceeeeccc
Q psy2827 211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY---SFERKLEAKEFPHHLYIQNY 287 (373)
Q Consensus 211 ~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~---~~~r~l~~~e~p~~~~~~~~ 287 (373)
...+..+.+.||||....+++....++.++++.++.++||.. ..+|+||..... .-..+..+.+.|.. ..
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e---~~~FgL~~~~~~~~~~~~~~wL~~~k~l~----~q 154 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN---HDEYSLVRELMEEKKDDELNWLDHGRTLR----EQ 154 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC---GGGEEEECCC----------CCCTTSBTG----GG
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC---ccccEEEEEecccccchHHHHHhcCchhH----hh
Confidence 345588999999999999999999999999999999999932 579999876431 23344445555522 11
Q ss_pred cCCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhh
Q psy2827 288 STASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEIT 356 (373)
Q Consensus 288 ~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l 356 (373)
.......+.||+-|| |.+...+.. |+++.+|+|.|+..||.+|++.|+ +.+.+|+||+-|-.--.|-
T Consensus 155 ~~~~~~~l~frvKf~-~~d~~~~~~-D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~qae~Gd~~ 222 (371)
T 3ivf_A 155 GVEEHETLLLRRKFF-YSDQNVDSR-DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN 222 (371)
T ss_dssp TCCTTCEEEEEECCC-CBCSSCBTT-CHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCceEEEEEEEe-cCCccccCC-CHHHHHHHHHHhhHHHhCceeecCHHHHHHHHHHHHHHHhCCCC
Confidence 111233478888777 443444456 999999999999999999999987 8999999999875444443
No 169
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.93 E-value=9.7e-09 Score=91.51 Aligned_cols=88 Identities=28% Similarity=0.517 Sum_probs=70.5
Q ss_pred cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
+..+++.+...+|||++.++.... .+...+++|..|.++|||+++| |++||+|++|||.++.+++++++..
T Consensus 107 ~~~v~l~~~~~~lG~~l~~g~~~~--------~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~ 178 (200)
T 2qt5_A 107 TVEVTLHKEGNTFGFVIRGGAHDD--------RNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS 178 (200)
T ss_dssp EEEEEEECBTTBCSEEEEEECCSS--------TTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEecCCCCeEEEEECCCCCC--------ccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 445666677778999998653210 0112356899999999999999 9999999999999999667999999
Q ss_pred HHHhCCCeEEEEEEecC
Q psy2827 88 LIKSGGDVLSLTVISVS 104 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r~~ 104 (373)
+++..++.+.++|.|..
T Consensus 179 ~l~~~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 179 ILKQCGQEATLLIEYDV 195 (200)
T ss_dssp HHHTTCSEEEEEEEEEE
T ss_pred HHHcCCCeEEEEEEECC
Confidence 99988899999998853
No 170
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=98.93 E-value=6.4e-09 Score=99.40 Aligned_cols=134 Identities=8% Similarity=0.060 Sum_probs=97.8
Q ss_pred ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC
Q psy2827 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS 291 (373)
Q Consensus 212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~ 291 (373)
..++.+.+.|||| .+.+++....++.++++.++.++||. -..+|+||.. ..+ .....+.+-+..- |......
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~---e~~~FgL~~~-~~~-~~~wL~~~~~i~~--q~~~~~~ 91 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLR---ETWFFGLQYT-IKD-TVAWLKMDKKVLD--HDVSKEE 91 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC---CGGGEEEEEE-ETT-EEEECCTTSBGGG--SSCCCSS
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCC---CCccceEEEE-eCC-cCeeCCCccCHHH--cCCCCCC
Confidence 3558899999999 78899999999999999999999993 2679999987 222 2333343433210 1001112
Q ss_pred CceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHh
Q psy2827 292 ATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEI 355 (373)
Q Consensus 292 ~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~ 355 (373)
...+.||+-||.+.... .+. |+++.+|+|.|+.+||.+|++.++ +.+.+|+||+-|-.--+|
T Consensus 92 ~~~l~fr~kf~~~~~~~-~l~-~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~Qa~~Gd~ 154 (314)
T 1h4r_A 92 PVTFHFLAKFYPENAEE-ELV-QEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDY 154 (314)
T ss_dssp SEEEEEEESSCCSSHHH-HCC-SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSC
T ss_pred CEEEEEEEEEecCCchh-hhc-CHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 23488999999655443 455 799999999999999999999987 899999999987443333
No 171
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=98.92 E-value=2.5e-09 Score=110.06 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=101.4
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc----c
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY----S 288 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~----~ 288 (373)
.++.+.++||||....+++....++.++++.++.++|| .. ...+|+||.+. ....+-|.+.|..+-. ++.+ .
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL-~e-~~~~FgL~~~~-~~~~~~L~~~~~i~D~-~~~we~~~~ 290 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAM-ED-SRNMFALFEYN-GHVDKAIESRTVVADV-LAKFEKLAA 290 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC-TT-CCSEEEEEEES-SSCEEECCTTSBHHHH-HHHHHHHTT
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCC-CC-CCCceEEEEEe-CCeeEecCCCCchhHH-HHHHHHHhh
Confidence 35889999999999999999999999999999999999 33 35789999764 4456667777765431 1111 0
Q ss_pred ----CCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhc
Q psy2827 289 ----TASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDA 349 (373)
Q Consensus 289 ----~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~ 349 (373)
......+.+|+++|.+. ..+.. |+++.+|+|.|++.||.+|++.++ +...+|+||+-|
T Consensus 291 ~~~~~~~~~~l~fR~~ff~~~--~~~~~-d~~~~~lly~Q~~~dil~G~~~~~~e~a~~LAAl~lQ 353 (555)
T 3au4_A 291 TSEVGDLPWKFYFKLYCFLDT--DNVPK-DSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQ 353 (555)
T ss_dssp SCCTTCCCCEEEEEEEECSCC--TTCCT-TSHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEEEEeecCc--ccCCc-chHHHHhhHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence 11234589999999543 33555 899999999999999999999986 899999999643
No 172
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.87 E-value=7.3e-09 Score=82.25 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=62.7
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCCC-CCCCCee
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPP-DDHSGYQ 121 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~~-~~~~~~~ 121 (373)
.++.|..|.++|||++ ||++||+|++|||+++.+ ++++...+.. .|+.+.+++.|........+.+. ....+.+
T Consensus 7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~ 83 (100)
T 3i18_A 7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKKGTP 83 (100)
T ss_dssp CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTTCCE
T ss_pred CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCCCCc
Confidence 4568999999999995 999999999999999999 9999999987 58899999998654332222221 1113456
Q ss_pred eeeeeecCC
Q psy2827 122 QIDYTEKRS 130 (373)
Q Consensus 122 ~iGi~~~~~ 130 (373)
.+|+.+..+
T Consensus 84 ~iGi~~~~~ 92 (100)
T 3i18_A 84 GIGITLVDD 92 (100)
T ss_dssp ECSEEEGGG
T ss_pred EEeEEEecC
Confidence 788876543
No 173
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=98.82 E-value=1.3e-08 Score=96.68 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=98.4
Q ss_pred CccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCC
Q psy2827 211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTA 290 (373)
Q Consensus 211 ~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~ 290 (373)
...+..+.+.||||..+.+++....+..++++.++.++||. -..+|+|+.....+ .+...+.+-|.. .....
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~---e~~~FgL~~~~~~~-~~~wLd~~k~i~----~q~~~ 85 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL---EEDYFGLAIWDNAT-SKTWLDSAKEIK----KQVRG 85 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS---SGGGEEEEEEEETT-EEEECCTTSBHH----HHC--
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC---CcceeEEEEEcCCC-ccchhccchhHH----HhcCC
Confidence 44568899999999999999999999999999999999993 37789998664332 334445555532 11111
Q ss_pred CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccc
Q psy2827 291 SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASR 351 (373)
Q Consensus 291 ~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~ 351 (373)
....+.+|+-||.|. +. .+. |+++..|+|.|+..||.+|++.++ +.+.+|+||+-|-.
T Consensus 86 ~~~~l~frvkfy~~~-~~-~l~-~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAAl~~Qae 144 (296)
T 3qij_A 86 VPWNFTFNVKFYPPD-PA-QLT-EDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSE 144 (296)
T ss_dssp -CCEEEEEESSCCSC-GG-GSS-CHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEeCCC-ch-hcc-CHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 234588999999554 44 456 799999999999999999999987 89999999987643
No 174
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=98.81 E-value=2.2e-08 Score=103.16 Aligned_cols=129 Identities=9% Similarity=0.129 Sum_probs=97.3
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCC
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASA 292 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~ 292 (373)
.++.+.++|||| .+.+++....++.+++..+|.++||. -..||+||.....+ ...+.+.+.|..- |.......
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~---e~~~FGL~~~d~~~-~~~WLd~~k~i~~--q~~~~~~~ 75 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR---EVWFFGLQYTDSKG-DLTWIKLYKKVMQ--QDVKKENP 75 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC---CGGGEEEEEEBTTS-CEEECCTTSBGGG--SCBCCCSS
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC---CccceeEEEEecCc-chhHhhccccHHH--hcccCCCC
Confidence 458899999998 67899999999999999999999993 24789998754322 2345566666321 11111122
Q ss_pred ceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827 293 TCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS 350 (373)
Q Consensus 293 ~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~ 350 (373)
..+.||+.||.|.....| . |+++.+|+|.|+..||.+|++.|+ +...+|++|+-|-
T Consensus 76 ~~L~FRvkfy~~~~~~~l-~-d~~t~~LlYlQvk~dIl~G~l~c~~e~a~~LAAL~lQa 132 (575)
T 2i1j_A 76 LQFKFRAKFYPEDVADEL-I-QEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQA 132 (575)
T ss_dssp EEEEEEESSCCSSHHHHC-C-SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcCCChhhhc-C-CHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 348899999955444344 5 699999999999999999999987 8999999998763
No 175
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.77 E-value=2.9e-08 Score=105.17 Aligned_cols=83 Identities=36% Similarity=0.635 Sum_probs=73.0
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV 86 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~ 86 (373)
.++.|+|.++..+|||++.+..+ ..+++|..|.+||||+++| |++||+|++|||+++.+++++++.
T Consensus 307 ~~~~v~l~~~~~~lG~~i~~~~~-------------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~ 373 (721)
T 2xkx_A 307 EPRRIVIHRGSTGLGFNIVGGED-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAA 373 (721)
T ss_pred ceEEEEEEECCCCccEEEeccCC-------------CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHH
Confidence 46889999988899999987532 1345899999999999999 999999999999999999999999
Q ss_pred HHHHhCCCeEEEEEEec
Q psy2827 87 ELIKSGGDVLSLTVISV 103 (373)
Q Consensus 87 ~~i~~~g~~v~l~V~r~ 103 (373)
.+++..+..+.|+|.|.
T Consensus 374 ~~l~~~~~~v~L~v~r~ 390 (721)
T 2xkx_A 374 IALKNAGQTVTIIAQYK 390 (721)
T ss_pred HHHHhcCCeEEEEEEeC
Confidence 99998888899998764
No 176
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=98.77 E-value=8.5e-09 Score=101.10 Aligned_cols=131 Identities=8% Similarity=-0.035 Sum_probs=94.9
Q ss_pred eEEEEEcCCCc----eEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccC-
Q psy2827 215 VDIKILLPDRE----VITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYST- 289 (373)
Q Consensus 215 l~l~nlLPDGg----~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~- 289 (373)
-.+.++||||+ ...+++....++.++++.++.++|+ ....+|+||.....+=...+.+.+.+..-.+.++..
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL---~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~~ 84 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKV---KNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELA 84 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTC---SCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHHHTT
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCC---CeEeEEEEEEEEcCCCceEeeCCccchhhhhhhhhcc
Confidence 46678999997 8899999999999999999999999 667789999865321112223333332101112211
Q ss_pred -C-CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCc-cch-hhHHHHHHHHhc
Q psy2827 290 -A-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQI-RAE-DRLYELKALQDA 349 (373)
Q Consensus 290 -~-~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~-~~~-~~~~~L~~lq~~ 349 (373)
. ....+.+|..|| |++...+..+|+++++|+|.|+.+|+.+|++ .++ +.+.+|++|+-|
T Consensus 85 ~~~~~~~l~fRvrF~-~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LAaL~~q 147 (375)
T 2al6_A 85 HPPEEWKYELRIRYL-PKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIR 147 (375)
T ss_dssp SCGGGEEEEEEECCC-CTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEEEEe-cCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH
Confidence 1 123488998888 6666666666999999999999999999995 344 899999999885
No 177
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.75 E-value=3.1e-08 Score=77.90 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=50.0
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-C-CCeEEEEEEecC
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-G-GDVLSLTVISVS 104 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~-g~~v~l~V~r~~ 104 (373)
+|..|.++|||++|||++||+|++|||+++.+ |.++...+.. . ++.+.++|.|.+
T Consensus 5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g 61 (95)
T 3id1_A 5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFG 61 (95)
T ss_dssp BEEEECTTSHHHHTTCCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred EEEeeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECC
Confidence 58999999999999999999999999999999 9999998876 3 478999998864
No 178
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.74 E-value=8.3e-09 Score=101.61 Aligned_cols=90 Identities=22% Similarity=0.385 Sum_probs=72.7
Q ss_pred CCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827 6 QTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK 83 (373)
Q Consensus 6 ~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~ 83 (373)
+...+.|++.|. +.++||++.+... | ...|+++|..|.+||||+++| |++||+|++|||+++.++++.
T Consensus 202 ~~~~~~V~i~k~~ge~lG~~i~~~~~--------g--~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~ 271 (388)
T 3suz_A 202 SENCKELQLEKHKGEILGVVVVESGW--------G--SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 271 (388)
T ss_dssp SSCCEEEEECCCSSCCCCCCCBCC-------------CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCST
T ss_pred cccceEEEEECCCCCceeEEEEecCC--------C--CcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHH
Confidence 345688999987 5789999987421 0 113556799999999999999 999999999999999998889
Q ss_pred HHHHHHHh--CCCeEEEEEEecCc
Q psy2827 84 QVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 84 ~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
++..+++. .+..+.++|.|..+
T Consensus 272 ~~~~~l~~~~~~~~v~l~v~r~~~ 295 (388)
T 3suz_A 272 TCQGIIKGLKNQTQVKLNIVSCPP 295 (388)
T ss_dssp THHHHTTTCTTCSCEEEEEEECCS
T ss_pred HHHHHHHhccCCCccccccccccc
Confidence 99999987 45679999988644
No 179
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.72 E-value=3.8e-09 Score=82.63 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=58.2
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCC--CCCCCCeeee
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEP--PDDHSGYQQI 123 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~--~~~~~~~~~i 123 (373)
.|..|.++|||++ ||++||+|++|||.++.+ +.++..++.. .|+++.++|.|.+......+.+ ..+..+.+.+
T Consensus 4 ~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~gr~~~ 80 (91)
T 2kjp_A 4 YASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGI 80 (91)
T ss_dssp SCCCCCCSSCCSS-CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCTTCTTSCSC
T ss_pred EEEEECCCChHHH-cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccCCCCCccee
Confidence 5788999999998 999999999999999998 9999999987 4899999999865433222222 1222344566
Q ss_pred eeee
Q psy2827 124 DYTE 127 (373)
Q Consensus 124 Gi~~ 127 (373)
|++.
T Consensus 81 ~~~~ 84 (91)
T 2kjp_A 81 GVSL 84 (91)
T ss_dssp CSCC
T ss_pred EEee
Confidence 6654
No 180
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.70 E-value=1.9e-08 Score=79.02 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=51.8
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
++.|..|.++|||++ ||++||.|++|||.++.+ +.++..++.. .|+.+.+++.|.+..
T Consensus 6 Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 65 (94)
T 2kl1_A 6 GVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ 65 (94)
T ss_dssp CEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred cEEEEEECCCChHHh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 457889999999998 999999999999999998 9999999987 489999999986543
No 181
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.67 E-value=4.4e-08 Score=75.96 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=50.7
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSP 105 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~ 105 (373)
.|..|.++|||+++||++||+|++|||+++.+ +.++...+.. .++.+.+++.|.+.
T Consensus 7 ~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~ 63 (91)
T 2zpm_A 7 VLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS 63 (91)
T ss_dssp BCSEECTTSHHHHTTCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred EEEEECCCChHHhcCCCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCe
Confidence 58899999999999999999999999999998 9999999887 57899999988543
No 182
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.66 E-value=1.4e-07 Score=83.70 Aligned_cols=58 Identities=21% Similarity=0.484 Sum_probs=53.9
Q ss_pred ceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEec
Q psy2827 46 LQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~ 103 (373)
+++|..|.++|||+++| |++||+|++|||.++.+++++++.+++++.++.+.++|.|.
T Consensus 136 gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~ 194 (196)
T 1p1d_A 136 PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD 194 (196)
T ss_dssp CCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence 45899999999999999 99999999999999999899999999998889999999874
No 183
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.66 E-value=8.8e-08 Score=77.42 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=52.6
Q ss_pred CCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 44 APLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 44 ~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
..++.|..|.++|||+++||++||.|++|||.++.+ +.++...++. ++.+.+++.|.+.
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~ 92 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE 92 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence 356789999999999999999999999999999998 9999998887 6889999988543
No 184
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.65 E-value=6.2e-08 Score=74.76 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=49.1
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
+.|..+.|+|||+++||++||.|++|||+++.+ |.++..++.. .++.+.+++.|.+
T Consensus 21 ~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g 78 (87)
T 2i6v_A 21 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDG 78 (87)
T ss_dssp EEEEECSCHHHHHHTTCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred EEEEeCCCCCHHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence 357777888888999999999999999999999 9999988876 5789999998854
No 185
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.63 E-value=8.5e-08 Score=80.27 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=62.4
Q ss_pred ccEEEEecccCC-Cccccccccc-cCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeE
Q psy2827 21 FGFNVRGQVSEG-GQLRSINGEL-YAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVL 96 (373)
Q Consensus 21 ~Gfsi~g~~~~~-~~~~~~g~~~-~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v 96 (373)
+|+++..-.... ...+.+|+.. ...++.|..|.++|||+ |||++||+|++|||+++.+ +.++...+.. .|+.+
T Consensus 31 LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v 107 (134)
T 2l97_A 31 LGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTI 107 (134)
T ss_dssp CCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEE
T ss_pred eeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEE
Confidence 777765432110 1233455542 13456899999999999 9999999999999999999 9999998887 58999
Q ss_pred EEEEEecCc
Q psy2827 97 SLTVISVSP 105 (373)
Q Consensus 97 ~l~V~r~~~ 105 (373)
+++|.|.+.
T Consensus 108 ~l~v~R~g~ 116 (134)
T 2l97_A 108 KITYYRNGK 116 (134)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCE
Confidence 999998553
No 186
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=98.62 E-value=1e-07 Score=99.69 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc------
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY------ 287 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~------ 287 (373)
++.+.+.||||....+++....++.++++.++.++||.- ..+|+||.........-+.+.|.-.- .++++
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e---~~~FgL~~~~~dk~~sll~~~e~vlD-~l~~~E~~~k~ 338 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD---RFGFSLYIALFDKVSSLGSGSDHVMD-AISQCEQYAKE 338 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS---CTTEEEEEEETTEEEEEETSSCBHHH-HHHHHHHHHHT
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc---cccceeEEecCCceeecccCceEeec-HHHHHHHHHHh
Confidence 478999999999999999999999999999999999933 46999997643222221222321110 00100
Q ss_pred ----cCCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-h-hHHHHHHHHhcc
Q psy2827 288 ----STASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-D-RLYELKALQDAS 350 (373)
Q Consensus 288 ----~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~-~~~~L~~lq~~~ 350 (373)
.......+.||+.+|.|.. ..+. |+++.+|+|.|++.||.+|++.|+ + .+.+|+||+-|-
T Consensus 339 ~~~~~~~~~~~L~FRvkff~p~~--~~~~-d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAAl~~Qa 404 (655)
T 3pvl_A 339 QGAQERNAPWRLFFRKEVFTPWH--NPSE-DNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFV 404 (655)
T ss_dssp TTCCGGGCCCEEEEEECCCCTTC--CGGG-CHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHH
T ss_pred hccccCCCCeEEEEEEEEecCCc--cccc-CHHHHHHHHHHHhcccccCccCCChHHHHHHHHHHHHHH
Confidence 0112234899999997633 3456 899999999999999999999986 5 899999998754
No 187
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.57 E-value=2e-07 Score=75.29 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=51.3
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++.|..|.++|||+++||++||.|++|||+++.+ +.++...+. .++.+.+++.|.+.
T Consensus 35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~ 92 (112)
T 2p3w_A 35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGND 92 (112)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTE
T ss_pred CCeEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCE
Confidence 46789999999999999999999999999999998 999988885 47789999987543
No 188
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.53 E-value=3.1e-07 Score=76.00 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=59.0
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCCCCCCCCeee
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDDHSGYQQ 122 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~ 122 (373)
.++.|..|.++|||+++ |++||+|++|||.++.+ +.++...+.. .++.+.++| |.+. ....+.......+.+.
T Consensus 25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~~~ 99 (125)
T 2hga_A 25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSRAY 99 (125)
T ss_dssp CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCSCB
T ss_pred CceEEEEECCCChHHHh-cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCceE
Confidence 35689999999999999 99999999999999998 9999999884 588999999 7544 2222222111123346
Q ss_pred eeeeec
Q psy2827 123 IDYTEK 128 (373)
Q Consensus 123 iGi~~~ 128 (373)
+|+.+.
T Consensus 100 lGi~~~ 105 (125)
T 2hga_A 100 MGIRTS 105 (125)
T ss_dssp CCEEEE
T ss_pred EEEEec
Confidence 777654
No 189
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.47 E-value=3e-07 Score=73.48 Aligned_cols=55 Identities=25% Similarity=0.250 Sum_probs=47.8
Q ss_pred EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS 104 (373)
Q Consensus 48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~ 104 (373)
.|..+.|+|||+++||++||.|++|||+++.+ |.++..++.. .++.+.++|.|.+
T Consensus 40 ~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g 96 (105)
T 2i4s_A 40 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDG 96 (105)
T ss_dssp EEEECSCTHHHHHHTCCTTCEEEEETTEETTS--TTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred EEecCCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCeEEEEEEECC
Confidence 46667777888999999999999999999999 8898888875 5889999998854
No 190
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.39 E-value=2.5e-06 Score=73.55 Aligned_cols=63 Identities=17% Similarity=0.391 Sum_probs=52.9
Q ss_pred cccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2827 37 SINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101 (373)
Q Consensus 37 ~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~ 101 (373)
.+|+.+. .+ +|..|.++|||+++||++||+|++|||.++.+++...+...+.+.+..+.+++.
T Consensus 101 ~lG~~~~-~g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~ 163 (166)
T 1w9e_A 101 HVGFIFK-NG-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 163 (166)
T ss_dssp CCSEEEE-TT-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred cEeEEEe-CC-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence 3444433 34 699999999999999999999999999999998888888888888888877764
No 191
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.37 E-value=5.6e-07 Score=80.90 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=62.1
Q ss_pred CceEEEEecCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCcc--ccccCCCCCCCCCe
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPE--EAERLEPPDDHSGY 120 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~-GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~~--~~~~~~~~~~~~~~ 120 (373)
.++.|..|.++|||++|||++ ||.|++|||. +.+ ++++.+.++. .++++.++|.|.... ....+.+.....+.
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~ 188 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGE 188 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSS
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCc
Confidence 466899999999999999999 9999999998 877 8999999988 689999999885421 22233332222345
Q ss_pred eeeeeeecC
Q psy2827 121 QQIDYTEKR 129 (373)
Q Consensus 121 ~~iGi~~~~ 129 (373)
+.+|+....
T Consensus 189 g~lG~~~~~ 197 (209)
T 3rle_A 189 GSLGCGIGY 197 (209)
T ss_dssp SSSCEEEEC
T ss_pred eeeeEEecC
Confidence 678876543
No 192
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.33 E-value=1.1e-06 Score=85.13 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=54.2
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.+++|..|.++|||++|||++||+|++|||+++.+ +.++...+.. .|+.++++|.|.+.
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~ 323 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK 323 (345)
T ss_dssp SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 46689999999999999999999999999999998 9999999986 68999999998654
No 193
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.28 E-value=4.6e-06 Score=83.19 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=53.0
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+++|..|.++|||+++||++||+|++|||+++.+ ++++.++++..++.+.++|.|...
T Consensus 364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~ 421 (436)
T 4a8c_A 364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE 421 (436)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence 5689999999999999999999999999999998 999999999866689999988643
No 194
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.25 E-value=1.3e-07 Score=93.01 Aligned_cols=89 Identities=16% Similarity=0.300 Sum_probs=7.7
Q ss_pred CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE 87 (373)
Q Consensus 8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~ 87 (373)
.+-++++.|.+...-+.+... .....+|+.... + +|..|.++|||+++||++||+|++|||+++.+.+|+++..
T Consensus 284 ~~v~l~v~r~~~~~~v~l~~~----~~~~~lG~~i~~-g-~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~ 357 (388)
T 3suz_A 284 TQVKLNIVSCPPVTTVLIKRP----DLKYQLGFSVQN-G-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQ 357 (388)
T ss_dssp SCEEEEEEECCSCC------------------------------------------------------------------
T ss_pred CccccccccccccceeeEeec----CCCCccceEEec-C-EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 335566666654443443211 111234444322 2 6889999999999999999999999999999888999999
Q ss_pred HHHhCCCeEEEEEEe
Q psy2827 88 LIKSGGDVLSLTVIS 102 (373)
Q Consensus 88 ~i~~~g~~v~l~V~r 102 (373)
.+++.+..+.++|.+
T Consensus 358 ~l~~~~~~v~L~V~p 372 (388)
T 3suz_A 358 ALSNSVGEIHMKTMP 372 (388)
T ss_dssp ---------------
T ss_pred HHHhCCCeEEEEEEe
Confidence 999888888888753
No 195
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.25 E-value=1.5e-06 Score=82.98 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=53.8
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.++.|..|.++|||++|||++||+|++|||+++.+ +.++...++. .|+.+.++|.|.+.
T Consensus 244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~ 304 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK 304 (318)
T ss_dssp CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 56789999999999999999999999999999999 9999999986 58999999998543
No 196
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.24 E-value=2.7e-06 Score=81.45 Aligned_cols=58 Identities=28% Similarity=0.419 Sum_probs=52.7
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEe-cC
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVIS-VS 104 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r-~~ 104 (373)
.++.|..|.++|||++|||++||+|++|||+++.+ +.++...+.. .|+.++++|.| .+
T Consensus 242 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~~g 302 (324)
T 1y8t_A 242 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPSG 302 (324)
T ss_dssp SSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEECSSC
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 45689999999999999999999999999999999 9999999876 58999999988 54
No 197
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.24 E-value=1.8e-06 Score=90.45 Aligned_cols=131 Identities=8% Similarity=-0.036 Sum_probs=98.4
Q ss_pred EEEEEcCCCc----eEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc---c
Q psy2827 216 DIKILLPDRE----VITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY---S 288 (373)
Q Consensus 216 ~l~nlLPDGg----~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~---~ 288 (373)
.+.++||||. ...|++....++.+++..++.++|+ ....||+|.+....+-.+.+.+.+.+..-...+| .
T Consensus 9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i---~~~~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~ 85 (656)
T 2j0j_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKV---KNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAH 85 (656)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTC---SCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTS
T ss_pred heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCc---ceeeeEEEEEeecccCceeeeCCCCcHHHHHhhhcccC
Confidence 3557888887 8899999999999999999999998 5567899987544323445556655532111122 1
Q ss_pred CCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCcc-c-hhhHHHHHHHHhcc
Q psy2827 289 TASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIR-A-EDRLYELKALQDAS 350 (373)
Q Consensus 289 ~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~-~-~~~~~~L~~lq~~~ 350 (373)
......+.||.-|| |++..+|+.+|..++.|+|.|..+|+.+|++. + .+...+|++|.-+.
T Consensus 86 ~~~~~~~~~rvrf~-p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La~l~~~~ 148 (656)
T 2j0j_A 86 PPEEWKYELRIRYL-PKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRR 148 (656)
T ss_dssp CTTSEEEEEEECCC-CTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEEEEc-CCCHHHHHhccHHHHHHHHHHHHHHHHhcccccccHhHHHHHHHHHHHH
Confidence 11223488888888 88888888879999999999999999999985 4 48999999999743
No 198
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.23 E-value=3.4e-06 Score=84.50 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=54.3
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
.+++|..|.++|||++|||++||+|++|||+++.+ +.++...+.. .|+.+.++|.|....
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~V~R~g~~ 343 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQ--ATQVKTTISLLRVGSTVKIIVERDNKP 343 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 46789999999999999999999999999999999 9999999986 589999999986543
No 199
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.23 E-value=4.4e-06 Score=82.01 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=53.5
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSP 105 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~ 105 (373)
++.|..|.++|||++|||++||+|++|||+++.+++..++..+++. .|..+.++|.|...
T Consensus 100 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~ 160 (388)
T 1fc6_A 100 DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA 160 (388)
T ss_dssp CEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence 3579999999999999999999999999999999777899888876 68899999988653
No 200
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.21 E-value=1.5e-06 Score=78.07 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=47.9
Q ss_pred ceEEEEecCCCHHHHcCCCCC-CEEEEECCEEcCCCCHHHHHHHH-Hh-CCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKG-DRILAVNNVNVEGATHKQVVELI-KS-GGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~G-D~Il~InG~~v~~~s~~~~~~~i-~~-~g~~v~l~V~r~~ 104 (373)
+++|..|.++|||++|||++| |+|++|||+++.+ |.++...+ .. .++.+.++|.|..
T Consensus 17 G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~--~~~~~~~~~~~~~g~~v~l~v~R~~ 76 (209)
T 3rle_A 17 GYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNK--DNDTLKDLLKANVEKPVKMLIYSSK 76 (209)
T ss_dssp EEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCS--SSSHHHHHHHHTTTSCEEEEEEETT
T ss_pred EEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcC--HHHHHHHHHhcCCCCEEEEEEEecC
Confidence 568999999999999999999 9999999999998 55554443 33 6899999998753
No 201
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.20 E-value=4.2e-06 Score=86.61 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=50.3
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
++.|..|.++|||++|||++||+|++|||.+| + ..++.++++. .|+++.++|.|.+..
T Consensus 497 gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 556 (597)
T 4fgm_A 497 GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-T--EQSVKRILERYIPGDTVTIHAFRRDEL 556 (597)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-C--TTTHHHHHTTCCTTCEEEEEEEETTEE
T ss_pred eEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-C--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 45799999999999999999999999999999 4 5677778775 689999999986544
No 202
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.18 E-value=3.6e-06 Score=80.70 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=52.5
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.++.|..|.++|||+++||++||.|++|||+++.+ ++++...++. ++.+.++|.|.+.
T Consensus 256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~ 313 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE 313 (325)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTE
T ss_pred CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence 46789999999999999999999999999999998 9999999876 6889999988654
No 203
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.10 E-value=3e-06 Score=82.03 Aligned_cols=59 Identities=25% Similarity=0.355 Sum_probs=53.6
Q ss_pred CceEEEEecCCCHHHHcCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRK-----------GDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~-----------GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.+++|..|.++|||++|||++ ||+|++|||+++.+ ++++...+.. .|+.++++|.|.+.
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~ 322 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSN--GSDLYRILDQCKVGDEVTVEVLRGDH 322 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSS--SHHHHHHHTTCCTTCEEEEEEECSSS
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCC--HHHHHHHHHhCCCcCEEEEEEEECCE
Confidence 467899999999999999999 99999999999999 8999999965 58999999998654
No 204
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.08 E-value=8.2e-06 Score=81.38 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=53.7
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
.+++|..|.++|||++|||++||+|++|||+++.+ +.++...+.. .|+.+.++|.|....
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP 324 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 46789999999999999999999999999999999 9999988875 589999999986543
No 205
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.03 E-value=3.5e-06 Score=83.11 Aligned_cols=56 Identities=25% Similarity=0.363 Sum_probs=47.5
Q ss_pred eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
+.|..|.++|||++|||++||+|++|||+++.++ + +..+++..|..+++++.|...
T Consensus 92 ~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~--~-~~~~l~~~g~~v~l~v~R~g~ 147 (403)
T 3k50_A 92 ALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKK--V-ESELLQGSTRQLQIGVYKEVV 147 (403)
T ss_dssp EEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTT--T-GGGGTSCSCEEEEEEEEEEEC
T ss_pred EEEEEeCCCChHHHcCCCCCCEEEEECCEEccch--h-HHHHhhCCCCEEEEEEEeCCc
Confidence 4799999999999999999999999999999984 2 555665578899999988543
No 206
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.00 E-value=9e-06 Score=81.44 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=52.6
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+++|..|.++|||+++||++||+|++|||+++.+ ++++.++++..++.+.++|.|..
T Consensus 387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g 443 (451)
T 3pv2_A 387 GVQVVGASENSAGWRAGIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGP 443 (451)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETT
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECC
Confidence 5689999999999999999999999999999998 99999999887889999998854
No 207
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=97.89 E-value=1.7e-06 Score=83.22 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=0.0
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~ 105 (373)
.+++|..|.++|||++|||++||+|++|||+++.+ ++++...++. ++.++++|.|.+.
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~ 311 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNE 311 (332)
T ss_dssp -------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence 35679999999999999999999999999999988 8999888876 7789999988544
No 208
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.58 E-value=1.4e-05 Score=80.04 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=52.7
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP 105 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~ 105 (373)
.+++|..|.++|||++|||++||+|++|||+++.+ +.++...+.. .|+.+.++|.|...
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCS--SHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 36789999999999999999999999999999999 8899988875 58899999988654
No 209
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=97.37 E-value=0.00016 Score=58.55 Aligned_cols=59 Identities=32% Similarity=0.552 Sum_probs=49.2
Q ss_pred ccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHHHHHHHhchhhhhhhH
Q psy2827 145 DESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEIYLEKVCAVRVIAESE 194 (373)
Q Consensus 145 ~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~ 194 (373)
+..|++|.|+..+.....+| .+..-++.||.+|+.||+.++++|.+.+|+
T Consensus 20 ~~~y~~Y~I~v~~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~ 99 (115)
T 3lui_A 20 GSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSE 99 (115)
T ss_dssp -CCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHSHHHHHCH
T ss_pred CCCEEEEEEEECCeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCh
Confidence 36788888888776666655 344456999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy2827 195 LMQEFLTDA 203 (373)
Q Consensus 195 ~~~~FL~~~ 203 (373)
.+++||...
T Consensus 100 ~~~~FL~~~ 108 (115)
T 3lui_A 100 TFNSFLRRA 108 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHCcC
Confidence 999999986
No 210
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.36 E-value=2.7e-05 Score=77.90 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=0.0
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~ 104 (373)
+++|..|.++|||+++||++||+|++|||+++.+ ++++.++++.....+.++|.|..
T Consensus 384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g 440 (448)
T 1ky9_A 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGD 440 (448)
T ss_dssp -----------------------------------------------------------
T ss_pred eEEEEEecCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECC
Confidence 4578999999999999999999999999999998 99999999875457888887743
No 211
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.15 E-value=0.00053 Score=74.99 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=48.9
Q ss_pred ceEEEEecCC--------CHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827 46 LQHVSAVLAG--------GAAEKAG--IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS 104 (373)
Q Consensus 46 ~~~V~~V~~g--------spA~~aG--L~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~ 104 (373)
++.|..|.+| |||+++| |+ ||+|++|||+++.+ +.++..+++. .|..+.++|.|..
T Consensus 749 ~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~--~~~~~~~~~~~~g~~v~l~v~r~~ 815 (1045)
T 1k32_A 749 HYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGA--GSNIYRVLSEKAGTSARIRLSGKG 815 (1045)
T ss_dssp EEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBT--TBCHHHHHHTTTTSEEEEEEECSS
T ss_pred EEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccc--hhhHHHhhcCCCCCEEEEEEECCC
Confidence 3578899987 9999999 99 99999999999998 5588888887 6899999998754
No 212
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.08 E-value=0.00049 Score=70.08 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=48.8
Q ss_pred CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827 45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT--------HKQVVELIKS--GGDVLSLTVISVSPE 106 (373)
Q Consensus 45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s--------~~~~~~~i~~--~g~~v~l~V~r~~~~ 106 (373)
.+++|..|.++|||+++ |++||.|+++||++|.+.. ..++..++.. .|+.++++|.|.+..
T Consensus 277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~ 347 (539)
T 4fln_A 277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEH 347 (539)
T ss_dssp BCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEE
T ss_pred CceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence 37789999999999876 9999999999999996511 1124566665 699999999997654
No 213
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=96.90 E-value=0.00072 Score=55.25 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=30.6
Q ss_pred chhHHHHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCA-VRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~ 201 (373)
+..+.+ ||++|++|+|.+++ ++.|++||.+++|+.
T Consensus 90 t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~ 125 (127)
T 2wwe_A 90 TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFL 125 (127)
T ss_dssp HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHH
T ss_pred CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhC
Confidence 344445 99999999999999 799999999999986
No 214
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=96.76 E-value=0.0044 Score=48.63 Aligned_cols=89 Identities=22% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee-ccceeeccCcCCCCceeeecccc
Q psy2827 210 NISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV-EYSFERKLEAKEFPHHLYIQNYS 288 (373)
Q Consensus 210 ~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~-~~~~~r~l~~~e~p~~~~~~~~~ 288 (373)
...+++.+.++..||...++++..+.++.++.+.++.+.++ ..-..++|+... +....|-+.++|.+.. .+..+.
T Consensus 5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~---~~~~~WaLvE~~P~L~~ER~~EDHE~vve-vl~~W~ 80 (100)
T 1wgr_A 5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHA---LSDETWGLVECHPHLALERGLEDHESVVE-VQAAWP 80 (100)
T ss_dssp CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSC---CCCCCCCEEEEETTTTEEEEECSSSCHHH-HHTTSC
T ss_pred ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCC---CCCCCeEEEEecCCCCcEEeccCchhHHH-HHhhCc
Confidence 34567899999999999999999999999999999999988 556677888776 4678999999999976 345566
Q ss_pred CCCCceEEEEeecc
Q psy2827 289 TASATCLCIRKWLF 302 (373)
Q Consensus 289 ~~~~~~~~lrk~~~ 302 (373)
..+.+++.|||-++
T Consensus 81 ~~s~nr~~F~kr~~ 94 (100)
T 1wgr_A 81 VGGDSRFVFRKNFA 94 (100)
T ss_dssp SSSCCEEEECSCCS
T ss_pred cCCCcEEEEecchh
Confidence 66667799999875
No 215
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=96.70 E-value=0.0013 Score=58.21 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=40.0
Q ss_pred ChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccc
Q psy2827 304 APLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASR 351 (373)
Q Consensus 304 ~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~ 351 (373)
|.++..+.. |+++.+|+|.|+.+||.+|++.++ +.+.+|+||+.|-.
T Consensus 5 ~~d~~~~~~-d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~ 52 (206)
T 1mix_A 5 YSDQNVDSR-DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQ 52 (206)
T ss_dssp CCHHHHHTS-CHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcC-CHHHHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhhe
Confidence 445555666 999999999999999999999987 89999999987543
No 216
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0076 Score=61.32 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=47.9
Q ss_pred ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEE
Q psy2827 46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTV 100 (373)
Q Consensus 46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V 100 (373)
+++|..|.++++|+.+|+++||.|++|||++|.+ ..++.+++++ .++.+.+.+
T Consensus 416 gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~ 469 (539)
T 4fln_A 416 IVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEF 469 (539)
T ss_dssp CEEEEEECCCGGGTTCSSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEE
T ss_pred EEEEEEecCCchhhhcCCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEE
Confidence 5689999999999999999999999999999999 9999999998 566676665
No 217
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=96.02 E-value=0.0037 Score=56.17 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhh
Q psy2827 314 DDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEIT 356 (373)
Q Consensus 314 d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l 356 (373)
||++++|+|.|+..||.+|++.|+ +...+|+||+-|-.--.|-
T Consensus 25 Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~ 68 (222)
T 4f7g_A 25 DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN 68 (222)
T ss_dssp -CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCC
Confidence 899999999999999999999987 8999999999874443343
No 218
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=94.16 E-value=0.038 Score=45.86 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=34.0
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
+..-++.||.+|+.||+.++++|.+.+|..++.||..-
T Consensus 87 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 124 (138)
T 3iq2_A 87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ 124 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCC
Confidence 34456999999999999999999999999999999865
No 219
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=92.88 E-value=0.067 Score=43.86 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=29.9
Q ss_pred cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
....-++.||.+|+.||+.++..+.+. +..+.+||..
T Consensus 88 ~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~ 124 (129)
T 4az9_A 88 WVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNV 124 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCC
Confidence 455566999999999999999998875 7777778753
No 220
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=92.59 E-value=0.058 Score=44.27 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=32.3
Q ss_pred HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
-++.||.+|+.||+.+++.|.+.+|+.+.+||..-
T Consensus 90 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~ 124 (130)
T 3p0c_A 90 LVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH 124 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCC
Confidence 35899999999999999999999999999999864
No 221
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.19 E-value=0.083 Score=44.08 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=33.8
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
...-++.||.+|+.||+.++++|.+.+|+.+..||..-
T Consensus 93 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 130 (146)
T 2csk_A 93 EESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEE 130 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCC
Confidence 44456999999999999999999999999999999764
No 222
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=92.04 E-value=0.054 Score=43.90 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=32.2
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~ 201 (373)
+..-++.||.+|+.||+.++++|.+.+|+.+..||.
T Consensus 90 ~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 125 (128)
T 2i4k_A 90 SAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLE 125 (128)
T ss_dssp STTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhC
Confidence 344569999999999999999999999999999985
No 223
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=91.83 E-value=0.13 Score=43.85 Aligned_cols=38 Identities=18% Similarity=0.538 Sum_probs=33.4
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhh-hHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAE-SELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~-s~~~~~FL~~~ 203 (373)
+..-++.||.+|+.||+.++++|.+.+ |+.+..||..-
T Consensus 120 ~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 120 SNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence 444569999999999999999999998 99999999753
No 224
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=91.61 E-value=0.39 Score=44.58 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=68.9
Q ss_pred ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec-cceeeccCcCCCCceeeeccccCC
Q psy2827 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE-YSFERKLEAKEFPHHLYIQNYSTA 290 (373)
Q Consensus 212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~-~~~~r~l~~~e~p~~~~~~~~~~~ 290 (373)
...+.+.+++.||..+++++..+.++.++++.++.+.++. .-...+||.... ...+|.|.++|...- .+..+...
T Consensus 29 ~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~---~~~~W~L~E~~~~l~lER~ledhE~V~d-vl~~W~~d 104 (281)
T 4gmv_A 29 VKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG---YSLDWSLVETVSELQMERIFEDHENLVE-NLLNWTRD 104 (281)
T ss_dssp SCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC---CCTTCEEEEEEGGGTEEEECCTTSBHHH-HHTTSCTT
T ss_pred cccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC---CCCCeEEEEEcCCccceeccccchhHHH-HHHhcccC
Confidence 3558999999999999999999999999999999999873 456678888764 568999999998865 33455555
Q ss_pred CCceEEEEee
Q psy2827 291 SATCLCIRKW 300 (373)
Q Consensus 291 ~~~~~~lrk~ 300 (373)
+.+.+.+||.
T Consensus 105 s~n~l~f~~~ 114 (281)
T 4gmv_A 105 SQNKLIFMER 114 (281)
T ss_dssp CCCEEEEECC
T ss_pred CCceEEEEec
Confidence 5667889875
No 225
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=91.17 E-value=0.13 Score=43.31 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=33.9
Q ss_pred chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
+..-++.||.+|+.||+.+++.+.+.+|..+..||..-
T Consensus 77 ~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~ 114 (154)
T 1xte_A 77 DPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMD 114 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCC
Confidence 34456999999999999999999999999999999764
No 226
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=90.70 E-value=0.17 Score=40.51 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=32.2
Q ss_pred chhHHHHHhhcHHHHHHHHhchhh---hhhhHHHHHHHHHh
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRV---IAESELMQEFLTDA 203 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~---i~~s~~~~~FL~~~ 203 (373)
+..-++.||.+|+.||+.+++++. +.+|..+.+||..-
T Consensus 74 ~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~ 114 (117)
T 1kmd_A 74 DPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS 114 (117)
T ss_dssp CHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCC
Confidence 444569999999999999999984 68999999998653
No 227
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=90.16 E-value=0.22 Score=40.04 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=52.9
Q ss_pred EEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee----------ccceeeccCcCCCCceeeeccccCC-CCceE
Q psy2827 227 ITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV----------EYSFERKLEAKEFPHHLYIQNYSTA-SATCL 295 (373)
Q Consensus 227 i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~----------~~~~~r~l~~~e~p~~~~~~~~~~~-~~~~~ 295 (373)
.+|-+...+++.+++..++.+.|| ...-.--|+|..+. .....|.|.+.|+|..+ ..++... ...++
T Consensus 26 ksvlvt~~tta~~vV~eaLekygL-~~~~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i-~~~w~~~~g~~~F 103 (116)
T 1wxa_A 26 KTILLSTTDTADFAVAESLEKYGL-EKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQI-FREWPSDKGILVF 103 (116)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTC-SSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHH-HHTCCGGGCCEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCC-CCCCchheEEEEEECccccccccCCCceEEECCCCCCHHHH-HHhccccCCceEE
Confidence 377788899999999999999999 55556678888875 23568899999999852 2333332 23457
Q ss_pred EEEee
Q psy2827 296 CIRKW 300 (373)
Q Consensus 296 ~lrk~ 300 (373)
.||+-
T Consensus 104 ~Lrrr 108 (116)
T 1wxa_A 104 QLKRR 108 (116)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 78764
No 228
>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}
Probab=89.41 E-value=0.39 Score=40.61 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=50.2
Q ss_pred EEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheee-eeccc--eeeccCcCCCCce
Q psy2827 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFE-IVEYS--FERKLEAKEFPHH 281 (373)
Q Consensus 218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~-~~~~~--~~r~l~~~e~p~~ 281 (373)
-.|||.|....+.+.+..++.+|++.++++... ...-.-||||. ..+.+ +.|||.+.|+|..
T Consensus 80 SfflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV--~dnP~kFALye~vh~~gev~~RKL~d~E~PL~ 144 (163)
T 3ddc_B 80 SFYLPLDAIKQMHISSTTTVSEVIQGLLDKFMV--VDNPQKFALFKRIHKDGQVLFQKLSIADYPLY 144 (163)
T ss_dssp CEEEEEEEEEEEEEETTCCHHHHHHHHHHHTTC--CSCGGGEEEEEEEEETTEEEEEECCTTCCHHH
T ss_pred eEECCCCceEEEEEccCCcHHHHHHHHHHHhcc--cCChhheEEEEEEccCCcEEEEECCCcCcCHh
Confidence 457887766699999999999999999999976 34567899999 54433 4899999999964
No 229
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=87.81 E-value=0.37 Score=39.84 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=31.6
Q ss_pred hHHHHHhhcHHHHHHHHhchhh-hhhhHHHHHHHHHh
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRV-IAESELMQEFLTDA 203 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~-i~~s~~~~~FL~~~ 203 (373)
.-++.||.+|+.||+.+...+. +.+|+.+.+||...
T Consensus 99 ~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~ 135 (143)
T 1h6h_A 99 EIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCC
Confidence 3459999999999999999887 99999999998653
No 230
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=85.70 E-value=0.42 Score=38.96 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=30.2
Q ss_pred hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
.-++.||.+|+.||+.+++.|.+. |..+.+||..-
T Consensus 82 ~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~ 116 (128)
T 2ett_A 82 RGLEQRRQGLEAYIQGILYLNQEV-PKELLEFLRLR 116 (128)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHhCchhc-CHHHHHhcCCc
Confidence 346999999999999999999877 78999998754
No 231
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=84.79 E-value=0.54 Score=37.76 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=29.5
Q ss_pred HHHHhhcHHHHHHHHhch-hhhhhhHHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAV-RVIAESELMQEFLTD 202 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~-~~i~~s~~~~~FL~~ 202 (373)
++.||.+|+.||+.+.+. +.|++|+.+.+|+.-
T Consensus 81 ~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~ 114 (121)
T 2ar5_A 81 AAKRKIELNSYLQSLMNASTDVAECDLVCTFFHG 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCC
Confidence 488999999999999885 799999999999864
No 232
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=83.91 E-value=0.67 Score=44.59 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=31.3
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
++.||.||+.||+.|+++|.+.+|..+..||..
T Consensus 95 ie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~ 127 (366)
T 3dyt_A 95 IKMRMERLQAWMTRMCRHPVISESEVFQQFLNF 127 (366)
T ss_dssp HHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCC
Confidence 489999999999999999999999999999985
No 233
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=83.27 E-value=0.65 Score=38.25 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=30.3
Q ss_pred HHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHHHh
Q psy2827 171 DSRRRGLEIYLEKVCA-VRVIAESELMQEFLTDA 203 (373)
Q Consensus 171 ~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~~~ 203 (373)
+.||.+|+.||+.+.+ .+.|.+|+.+.+||...
T Consensus 97 e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 97 AKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp CHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 8899999999999998 68999999999999764
No 234
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=81.05 E-value=0.95 Score=38.42 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=27.6
Q ss_pred hhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827 174 RRGLEIYLEKVCAVRVIAESELMQEFLTDA 203 (373)
Q Consensus 174 r~gl~~yl~~v~~~~~i~~s~~~~~FL~~~ 203 (373)
+.+|+.||+.|++.|++.++..+..||..-
T Consensus 121 r~~Le~FL~ri~~HP~L~~d~~~~~FL~~~ 150 (161)
T 3hpc_X 121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYD 150 (161)
T ss_dssp HHHHHHHHHHHHHSTTGGGCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcccCcHHHhhcCCC
Confidence 457999999999999999999999999875
No 235
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=80.75 E-value=0.86 Score=44.21 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=31.0
Q ss_pred HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~ 202 (373)
++.||.||+.||+.|+++|.+.+|+.+..||..
T Consensus 115 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 147 (386)
T 4akv_A 115 IEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSC 147 (386)
T ss_dssp TTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCC
Confidence 488999999999999999999999999999975
No 236
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=80.16 E-value=0.94 Score=37.04 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=22.7
Q ss_pred chhHHHHHhhcHHHHHHHHhchhh-hhhhH
Q psy2827 166 TEQQLDSRRRGLEIYLEKVCAVRV-IAESE 194 (373)
Q Consensus 166 ~i~q~~~rr~gl~~yl~~v~~~~~-i~~s~ 194 (373)
...-++.||.+|+.||+.+++.+. +.+|.
T Consensus 75 ~~~~ie~Rr~~Le~yL~~ll~~~~~l~~sp 104 (134)
T 2v14_A 75 DERVIAERRSHLEKYLRDFFSVMLQSATSP 104 (134)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCTTST
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHhhcCCH
Confidence 344459999999999999988876 55554
No 237
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=79.49 E-value=1.2 Score=36.54 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHhhcHHHHHHHHhchh-hhhhhHHHHHHHHHh
Q psy2827 169 QLDSRRRGLEIYLEKVCAVR-VIAESELMQEFLTDA 203 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~~~-~i~~s~~~~~FL~~~ 203 (373)
-++.|+.+|+.||+.+...+ .+.+|+.+.+||...
T Consensus 86 ~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~ 121 (141)
T 1kq6_A 86 AAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVR 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCC
Confidence 34899999999999998865 699999999999643
No 238
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=79.29 E-value=4.1 Score=37.03 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=65.4
Q ss_pred ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee-ccceeeccCcCCCCceeeeccccCC
Q psy2827 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV-EYSFERKLEAKEFPHHLYIQNYSTA 290 (373)
Q Consensus 212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~-~~~~~r~l~~~e~p~~~~~~~~~~~ 290 (373)
...+.+.++.+||....+++..+.++.++.+.++.+.++.... ..++|... .....|.|.++|.+.- .+..+...
T Consensus 32 ~~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~---~~~l~E~~~~~~ler~l~d~E~v~~-v~~~w~~~ 107 (291)
T 3tca_A 32 VKKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV---DWCLYEIYPELQIERVFEDHENVVE-VLSDWTRD 107 (291)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT---TEEEEEEETTTTEEEECCTTSBHHH-HHTTSCTT
T ss_pred ccceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC---CeEEEEeccccccceecccchhHHH-HHHhhccc
Confidence 3447788999999999999999999999999999999883332 35677665 3578999999998864 23444544
Q ss_pred CCceEEEEeec
Q psy2827 291 SATCLCIRKWL 301 (373)
Q Consensus 291 ~~~~~~lrk~~ 301 (373)
..+++.+++-+
T Consensus 108 ~~~~l~~~~~~ 118 (291)
T 3tca_A 108 TENKVLFLEKE 118 (291)
T ss_dssp CCCEEEEEECT
T ss_pred cccchhhhhhh
Confidence 55668888764
No 239
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=79.23 E-value=4.1 Score=37.11 Aligned_cols=82 Identities=23% Similarity=0.227 Sum_probs=60.7
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec-cceeeccCcCCCCceeeeccccCCC
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE-YSFERKLEAKEFPHHLYIQNYSTAS 291 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~-~~~~r~l~~~e~p~~~~~~~~~~~~ 291 (373)
.+.-+.+++.||..+++.+..+.++.++.+.++.+-.. ..-...++|+... ...+|-|.++|...- ++. +.++
T Consensus 7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~---~~~~~W~l~E~~~~l~lER~ledhE~V~e--v~~-~~~s 80 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHS---VDDNSWTLVEHHPHLGLERCLEDHELVVQ--VES-TMAS 80 (256)
T ss_dssp -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHH--HHH-TCCS
T ss_pred CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCC---CCCCCEEEEEECCCcccccccccchhHHH--HHh-ccCC
Confidence 45788999999999999999999999999999998766 3357788888764 678999999998854 222 3344
Q ss_pred CceEEEEee
Q psy2827 292 ATCLCIRKW 300 (373)
Q Consensus 292 ~~~~~lrk~ 300 (373)
.+.+++||.
T Consensus 81 ~~~l~f~k~ 89 (256)
T 3hk0_A 81 ESKFLFRKN 89 (256)
T ss_dssp SCEEEEEEC
T ss_pred CceEEEecc
Confidence 566889985
No 240
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=72.53 E-value=1.7 Score=36.62 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=30.4
Q ss_pred HHHHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHHHh
Q psy2827 169 QLDSRRRGLEIYLEKVCA-VRVIAESELMQEFLTDA 203 (373)
Q Consensus 169 q~~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~~~ 203 (373)
-++.|+.+|+.||+.+.. .+.|.+|+.+.+|+..-
T Consensus 100 ~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 135 (156)
T 2v6v_A 100 ITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVL 135 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 348999999999999997 56799999999998764
No 241
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=69.03 E-value=4 Score=30.05 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=36.5
Q ss_pred EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchh
Q psy2827 216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYF 259 (373)
Q Consensus 216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f 259 (373)
.+..+|||++|=.|++..|-++.+.+..+.++=|| ..+.-.+|
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L-~pe~C~V~ 45 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL-QPECCAVF 45 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC-CGGGEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC-CHHHeEEE
Confidence 48899999999999999999999999999999999 33443333
No 242
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=68.23 E-value=2.2 Score=35.53 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHhhcHHHHHHHHhchh-hhhhhHHHHHHHHHh
Q psy2827 170 LDSRRRGLEIYLEKVCAVR-VIAESELMQEFLTDA 203 (373)
Q Consensus 170 ~~~rr~gl~~yl~~v~~~~-~i~~s~~~~~FL~~~ 203 (373)
++.|+.+|+.||+.+..-+ .|.+|+.+.+|+...
T Consensus 93 ~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 127 (149)
T 2l73_A 93 GLARLQLLETYSRRLLATAERVARSPTITGFFAPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 4899999999999998765 599999999999765
No 243
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=67.27 E-value=3.7 Score=30.88 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=34.2
Q ss_pred EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCC
Q psy2827 216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQ 251 (373)
Q Consensus 216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~ 251 (373)
.+..+|||++|=.|++..|-++.+.+..++.+=+|.
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~ 44 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN 44 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999999994
No 244
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=62.97 E-value=4.5 Score=30.74 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=43.3
Q ss_pred EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCce
Q psy2827 216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHH 281 (373)
Q Consensus 216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~ 281 (373)
.+.++.|||.+..|.+..+.++.++++.+|.+.|+-. -.|- | .+-+|..|-..||.
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~---~~~~-L------kh~~k~lDLSlpfR 66 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNP---SEYD-L------KFQRTVLDLSLQWR 66 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCG---GGCE-E------EETTEEESSSCBHH
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCCh---hhCe-E------EeCCEeccccceeE
Confidence 6788889999999999999999999999999999922 2221 1 23456667777764
No 245
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=62.20 E-value=16 Score=29.14 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=58.9
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCC----chhhhchhheeeeec-----------cceeeccCcCCCC
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQ----SPSSAAYFYLFEIVE-----------YSFERKLEAKEFP 279 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~----~~~~l~~f~lf~~~~-----------~~~~r~l~~~e~p 279 (373)
+-+-|..||--..++.+....++.+++..+..++|.. ......-|.|-.... ....|-|.+.|.|
T Consensus 10 v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev~~~~~~k~~~~~~~~~RVL~~~E~~ 89 (117)
T 2c5l_C 10 VQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEVVKDTTNKKTTTPKSSQRVLLDQECV 89 (117)
T ss_dssp EEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEEECC---------CEEEEECCTTSBH
T ss_pred EEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEEcccCCCccccccCceEEecCCCCCH
Confidence 5566667888899999999999999999999999983 145566677776652 2467779999999
Q ss_pred ceeeeccccCCCCceEEEE
Q psy2827 280 HHLYIQNYSTASATCLCIR 298 (373)
Q Consensus 280 ~~~~~~~~~~~~~~~~~lr 298 (373)
+.+ ..++.. ...+.|+
T Consensus 90 l~~-qs~Wk~--~gRF~Lk 105 (117)
T 2c5l_C 90 FQA-QSKWKG--AGKFILK 105 (117)
T ss_dssp HHH-HHTCSS--CEEEEEE
T ss_pred HHH-HHhhCc--CceEEEE
Confidence 872 234443 2444444
No 246
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=61.62 E-value=5.6 Score=30.39 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=37.4
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchh
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYF 259 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f 259 (373)
-.+..+|||+++=.|++..|-++.+.+..++.+=|| ..+.-.+|
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L-~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL-IPECCAVY 61 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTC-CGGGEEEE
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCC-CHHHcEEE
Confidence 379999999999999999999999999999999999 43443333
No 247
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=59.17 E-value=7.5 Score=29.76 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=38.0
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchh
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYF 259 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f 259 (373)
.-.+.++|||+++=.|++..|-++.+.+..+..+=|| ..+.-.+|
T Consensus 13 ~~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L-~pe~C~Vy 57 (96)
T 3ny5_A 13 KPIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGL-IPECCAVY 57 (96)
T ss_dssp SCEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC-CGGGEEEE
T ss_pred hCEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCC-ChHHeEEE
Confidence 3579999999999999999999999999999999999 44444433
No 248
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=54.96 E-value=14 Score=29.83 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=33.7
Q ss_pred EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCC
Q psy2827 216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQ 251 (373)
Q Consensus 216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~ 251 (373)
.|.+=||||...++.+..+.++...+..+|+++|+.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~ 48 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT 48 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCC
Confidence 578889999999999999999999999999999983
No 249
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=51.54 E-value=9 Score=29.88 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=34.4
Q ss_pred EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCc
Q psy2827 216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQS 252 (373)
Q Consensus 216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~ 252 (373)
-|..+|||.++=.|++..|-++.+.+..+..+=||.+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p 56 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP 56 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH
Confidence 5999999999999999999999999999999999943
No 250
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=44.69 E-value=28 Score=26.11 Aligned_cols=56 Identities=11% Similarity=0.189 Sum_probs=41.9
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCC
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFP 279 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p 279 (373)
+-|.+--+||..+.+++.+.+++..+.++++.+.|+ .... +.+..+ -++|.+.+.|
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi-~~~~---~rf~Fd-----G~~l~~~~Tp 61 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL-SMRQ---IRFRFD-----GQPINETDTP 61 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTC-CSTT---EEEEET-----TEECCTTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCC-Cccc---EEEEEC-----CEEcCCCCCH
Confidence 667777789999999999999999999999999998 3221 111112 3467777777
No 251
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=38.77 E-value=44 Score=25.00 Aligned_cols=59 Identities=12% Similarity=0.275 Sum_probs=43.1
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCc
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPH 280 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~ 280 (373)
..+-|.+--+||..+.+++.+.+++..++++++.+.|+ ....+ --+|. -++|.+...|-
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi-~~~~~--rf~fd------G~~l~~~~Tp~ 74 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL-SMRQI--RFRFD------GQPINETDTPA 74 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTC-CGGGE--EEEET------TEECCTTCCTT
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCC-Cccce--EEEEC------CEEcCCCCCHH
Confidence 34667777779999999999999999999999999999 33311 11222 34677777773
No 252
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=36.63 E-value=44 Score=25.12 Aligned_cols=57 Identities=12% Similarity=0.301 Sum_probs=41.9
Q ss_pred ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCC
Q psy2827 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFP 279 (373)
Q Consensus 214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p 279 (373)
.+-|.+--.||..+.+++.+.+++..+.++++.+.|+ ....+- -+|. -++|.+.+-|
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi-~~~~~r--f~Fd------G~~l~~~~Tp 63 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL-SMRQIR--FRFD------GQPINETDTP 63 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTC-CGGGEE--EEET------TEECCTTCCT
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCC-CcccEE--EEEC------CEEcCCCCCH
Confidence 3667777679999999999999999999999999998 332211 1222 3456777777
No 253
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=36.50 E-value=43 Score=24.17 Aligned_cols=37 Identities=5% Similarity=0.171 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCc-eEEEEEEecCCHHHHHHHhccccCC
Q psy2827 214 PVDIKILLPDRE-VITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 214 ~l~l~nlLPDGg-~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
.+-|.+--.||. .+.+++.+.+++..+.++++.+.|+
T Consensus 7 ~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi 44 (79)
T 3a4r_A 7 ELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGL 44 (79)
T ss_dssp CEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCC
Confidence 367777778996 8999999999999999999999998
No 254
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=36.28 E-value=48 Score=25.89 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=29.4
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhcccc
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKL 248 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~i 248 (373)
..+.+..|||+|=-|.+++.+..++++.-+.+-+.+
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 448999999999999999999999888866654443
No 255
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=34.38 E-value=40 Score=26.27 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=34.7
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCC
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQ 251 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~ 251 (373)
..+-|.+--.||..+.+++.+.+++..++++++.+.|+.
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~ 63 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS 63 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 447777777899999999999999999999999999983
No 256
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.89 E-value=57 Score=25.07 Aligned_cols=58 Identities=12% Similarity=0.247 Sum_probs=42.6
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCC
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFP 279 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p 279 (373)
..+-|.+--.||..+.+++.+.+++..++++++.+.|+ ....+ --+| + -++|.+...|
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi-~~~~~--rf~F-d-----G~~l~~~~Tp 80 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL-SMRQI--RFRF-D-----GQPINETDTP 80 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTC-CTTTS--CEES-S-----SSBCCTTSCT
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCC-CcceE--EEEE-C-----CEEcCCCCCH
Confidence 45667777779999999999999999999999999999 33211 1122 2 3456777777
No 257
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=33.55 E-value=45 Score=26.29 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=43.1
Q ss_pred cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCc
Q psy2827 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPH 280 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~ 280 (373)
..+-|.+.-.||..+.+.+.+.+++..++++++.+.|+ ....+.+ +| + -++|.+.+-|-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl-~~~~irF--lF-D-----G~rI~~~~TP~ 97 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV-PMNSLRF--LF-E-----GQRIADNHTPK 97 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTC-CTTSEEE--EE-T-----TEECCTTCCTT
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCC-ChhhEEE--EE-C-----CeECCCCCCHH
Confidence 44677777779999999999999999999999999998 3222111 12 1 34677777773
No 258
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=30.47 E-value=77 Score=24.07 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=35.1
Q ss_pred CccceEEEEEcCCCc-eEEEEEEecCCHHHHHHHhccccCCC
Q psy2827 211 ISSPVDIKILLPDRE-VITVSVRKSATADEVYASAVPKLYLQ 251 (373)
Q Consensus 211 ~~~~l~l~nlLPDGg-~i~ie~~~~~~~~~~~~~~~~~igl~ 251 (373)
....+.|.+.-+||. .+.+.+.+.+++...+.+++.+.|+.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~ 63 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS 63 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 345577777778995 78999999999999999999999983
No 259
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=29.40 E-value=57 Score=22.89 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=39.6
Q ss_pred EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCC
Q psy2827 216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFP 279 (373)
Q Consensus 216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p 279 (373)
-|.+--.||..+.+++.+.+++..+.++++.+.|+ .... +.+..+ -++|.+.+-|
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi-~~~~---~rf~fd-----G~~l~~~~Tp 57 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL-SMRQ---IRFRFD-----GQPINETDTP 57 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTC-CTTT---CEEEET-----TEECCTTCCT
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCC-Ccce---EEEEEC-----CEEcCCCCCH
Confidence 34555569999999999999999999999999998 3221 111112 3467777777
No 260
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=28.21 E-value=74 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=31.0
Q ss_pred eEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827 215 VDIKILLPDREVITVSVRKSATADEVYASAVPKLYL 250 (373)
Q Consensus 215 l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl 250 (373)
+-|.+- -+|+.+.+.+.+.+++..+++++|++.|+
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv 56 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGV 56 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTS
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCC
Confidence 556665 48888899999999999999999999999
No 261
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.66 E-value=76 Score=24.50 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=42.8
Q ss_pred ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCc
Q psy2827 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPH 280 (373)
Q Consensus 212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~ 280 (373)
...+-|.+-- ||..+.+++.+.+++..++++++.+.|+ .... +--+| + -++|.+...|-
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi-~~~~--~rF~F-d-----G~rl~~~~Tp~ 87 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGK-EMDS--LRFLY-D-----GIRIQADQTPE 87 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTC-CGGG--EEEEE-T-----TEECCTTCCTT
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCC-Cccc--EEEEE-C-----CeEcCCCCCHH
Confidence 3446777777 8999999999999999999999999998 3221 11122 2 34677777773
No 262
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=26.59 E-value=95 Score=23.14 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=50.3
Q ss_pred cceEEEEEcCCCceEEE--EEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCC
Q psy2827 213 SPVDIKILLPDREVITV--SVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTA 290 (373)
Q Consensus 213 ~~l~l~nlLPDGg~i~i--e~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~ 290 (373)
.+..|.+.+-+-.++.- -+-..++-.+++ ++++..|- .-|.|.. .-.+++|-|.+.|.|+. ..+++-..
T Consensus 5 ~~mel~Vwv~g~er~v~~vgvT~~TTC~DVV-aL~~~~G~------~~~~LvE-~WR~~ER~L~~~er~l~-~l~~WG~~ 75 (86)
T 2uwq_A 5 MPMFLTVYLSNNEQHFTEVPVTPETICRDVV-DLCKEPGE------SDCHLAE-VWCGSERPVADNERMFD-VLQRFGSQ 75 (86)
T ss_dssp SSEEEEEECSSCSSCEEEEEECTTCBSHHHH-HHSCSSCS------SSCEEEE-EETTEEEEECTTCBHHH-HHHHHCSC
T ss_pred cceEEEEEecCCccEEEccCCCCCCcHHHHH-HHHHccCC------CcEEEEe-eeCCCcccCCCcccHHH-HHHHHccc
Confidence 34677777765455433 445567788999 99998774 2222222 22579999999999987 44666554
Q ss_pred CC-ceEEEEe
Q psy2827 291 SA-TCLCIRK 299 (373)
Q Consensus 291 ~~-~~~~lrk 299 (373)
+. -++.||+
T Consensus 76 ~~eV~F~Lr~ 85 (86)
T 2uwq_A 76 RNEVRFFLRH 85 (86)
T ss_dssp GGGCEEEEEC
T ss_pred CCceEEEEec
Confidence 33 3677875
Done!