RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2827
(373 letters)
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 145 bits (368), Expect = 2e-43
Identities = 76/104 (73%), Positives = 88/104 (84%)
Query: 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
+ PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+
Sbjct: 2 SHGGSPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGV 61
Query: 64 RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
RKGDRIL VN VNVEGATHKQVV+LI++G L LTV+SV E
Sbjct: 62 RKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESES 105
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 124 bits (313), Expect = 2e-35
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 9 PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
+ V + K D+ GFGF +RG ++ + LQ++ +V GG A +AG+R GD
Sbjct: 8 EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 67
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
++ VN NV H+QVV +I+ GG+ L + V+ V+
Sbjct: 68 FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 124 bits (313), Expect = 2e-35
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
+ + R V I K G+GF +R + GQ+ + + G AE AG+
Sbjct: 2 SSGSSGRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGL 48
Query: 64 RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
+ D ++AVN +VE H VVE+I+ GGD +L V+ E L P
Sbjct: 49 KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGP 99
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 123 bits (310), Expect = 5e-35
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + + K GFGF +R + G+ P Q + V G A+KAG++ GDR
Sbjct: 4 PRCLHLEKGPQGFGFLLREEKGLDGR----------PGQFLWEVDPGLPAKKAGMQAGDR 53
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
++AV +VEG H++ V I+ G +SLTV+ + +
Sbjct: 54 LVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADRETSV 96
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 123 bits (310), Expect = 6e-35
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K +GF+++ + G +++ + G A +AG+ D
Sbjct: 9 PRLCYLVKEGGSYGFSLKTVQGKKGV-------------YMTDITPQGVAMRAGVLADDH 55
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
++ VN NVE A+H++VVE +K G + ++ ++ + SG
Sbjct: 56 LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 122 bits (308), Expect = 8e-35
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
PR + K +G+GFN+ S+ GQ + +V AE +G+R
Sbjct: 8 LRPRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQ 54
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
DRI+ VN V +EG H VV I++GGD L V+ +E
Sbjct: 55 DRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 123 bits (309), Expect = 2e-34
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 3 STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
S + V + K D+ GFGF +RG ++ + LQ++ +V GG A +A
Sbjct: 22 SDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA 81
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
G+R GD ++ VN NV H+QVV +I+ GG+ L + V+ V+
Sbjct: 82 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 121 bits (305), Expect = 3e-34
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V I K G+GF +R + GQ+ + + G AE AG++ D
Sbjct: 6 PRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDL 52
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
++AVN +VE H VVE+I+ GGD +L V+ E R
Sbjct: 53 VVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELERPHR 94
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 120 bits (304), Expect = 3e-34
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
+ PR + K G+GF++ G+ + GQ ++ V G AEKAG+
Sbjct: 1 RMLPRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLA 47
Query: 66 GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
GDR++ VN NVE TH+QVV I++ + + L V V PE E+L
Sbjct: 48 GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPETDEQL 91
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 119 bits (301), Expect = 1e-33
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
+ I S +GF++R G + ++Y V +V G A++AG+R GD I
Sbjct: 4 PPIVIHSSGKKYGFSLRAIRVYMG-----DSDVYTVHHVVWSVEDGSPAQEAGLRAGDLI 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
+N +V G H VVEL+ G+ +SL ++ E
Sbjct: 59 THINGESVLGLVHMDVVELLLKSGNKISLRTTALENTE 96
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 118 bits (299), Expect = 1e-33
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR + K G+GFN+ S P Q++ +V G A ++G+R DR
Sbjct: 5 PRLCHLRKGPQGYGFNLHSDKSR-------------PGQYIRSVDPGSPAARSGLRAQDR 51
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
++ VN NVEG H +VV IK+ D L V+ S
Sbjct: 52 LIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 89
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 117 bits (296), Expect = 4e-33
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
P+ ++AK + G+GF++ G + V GG A+ AG+ D
Sbjct: 4 PKLCRLAKGENGYGFHLNAIRGLPGS-------------FIKEVQKGGPADLAGLEDEDV 50
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
I+ VN VNV +++VV+ I+S G ++L V ++
Sbjct: 51 IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQDT 90
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 117 bits (295), Expect = 7e-33
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 9 PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
+ + + K D FGF ++ + + V+ V A+ AG+ GD
Sbjct: 5 RKVLTLEKGDNQTFGFEIQTYGLHHR-----EEQRVEMVTFVARVHESSPAQLAGLTPGD 59
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
I +VN +NVEG H+++V++IK+ G+VL L + +
Sbjct: 60 TIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYGT 96
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 116 bits (293), Expect = 3e-32
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PR + K +G+GFN+ S+ GQ + +V AE +G+R D
Sbjct: 9 RPRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQD 55
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA---ERLEPPDDH 117
RI+ VN V +EG H VV I++GGD L V+ +E R+ P +H
Sbjct: 56 RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEH 108
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 115 bits (289), Expect = 6e-32
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
GPRE +++K + +GF +R + G L + + G AEKAG+ G
Sbjct: 1 GPRESKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDG 47
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
DR+L +N V V+ H QVVEL++ G+ ++L V+ E D
Sbjct: 48 DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVD 96
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 116 bits (291), Expect = 6e-32
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRG--------------QVSEGGQLRSINGELYAPL-- 46
S GP+ V + ++ GFGF +R + E G P+
Sbjct: 3 SGSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDT 62
Query: 47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
V V GG A +AG+ GDRI+ VN +V G T+ QV+ LI++ L L+V+
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG 122
Query: 107 EA 108
+
Sbjct: 123 PS 124
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 114 bits (288), Expect = 8e-32
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 7 TGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
+ + V + K D FGF ++ + N + + A AG++
Sbjct: 14 SQRKLVTVEKQDNETFGFEIQSYRPQNQ-----NACSSEMFTLICKIQEDSPAHCAGLQA 68
Query: 66 GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
GD + +N V+ EG T+KQVV+LI+S G++L++ +
Sbjct: 69 GDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 111 bits (280), Expect = 9e-31
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
R V I K GFGF V G + V +V GGAA KAG+++GDR
Sbjct: 9 QRCVIIQKDQHGFGFTVSGD----------------RIVLVQSVRPGGAAMKAGVKEGDR 52
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
I+ VN V ++H +VV+LIKSG V +LT++ S +
Sbjct: 53 IIKVNGTMVTNSSHLEVVKLIKSGAYV-ALTLLGSSSGPS 91
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 110 bits (278), Expect = 2e-30
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 16/94 (17%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
R V++A+ G+GF + GQ AP +S V+ G A+ G+R GD+
Sbjct: 3 VRSVEVARGRAGYGFTLSGQ---------------AP-CVLSCVMRGSPADFVGLRAGDQ 46
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
ILAVN +NV+ A+H+ VV+LI VL + +
Sbjct: 47 ILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 114 bits (286), Expect = 2e-30
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PR + K +G+GFN+ S+ GQ + +V AE +G+R D
Sbjct: 9 RPRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQD 55
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA---ERLEPPDDHSG 119
RI+ VN V +EG H VV I++GGD L V+ +E R+ P +H
Sbjct: 56 RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN 110
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 110 bits (277), Expect = 4e-30
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 4 TQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
PRE +++K + +GF +R + G L + + G AEKAG
Sbjct: 9 ASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAG 55
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
+ GDR+L +N V V+ H QVVEL++ G+ ++L V+ E D
Sbjct: 56 LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVD 108
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 108 bits (272), Expect = 1e-29
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
R++ I + GFGF + +P++ V AV +GG AE+AG+++ D
Sbjct: 4 YRQITIPRGKDGFGFTICCD---------------SPVR-VQAVDSGGPAERAGLQQLDT 47
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
+L +N VE ++ I+S + L V + P+
Sbjct: 48 VLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQ 85
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 107 bits (269), Expect = 7e-29
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S + + PR + + GF +RG P+Q V + +A AG
Sbjct: 10 SKRWSPPRGIHFTVEEGDLGFTLRGN---------------TPVQ-VHFLDPHCSASLAG 53
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPDDHSG 119
++GD I+++ V+ + T +V++L+KS GG+ + + V+S+ + SG
Sbjct: 54 AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSSG 111
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 106 bits (267), Expect = 1e-28
Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
PR++ + K TG GFN+ G G VS +LAGG A+ +G
Sbjct: 10 GGDAREPRKIILHKGSTGLGFNIVGGEDGEGIF-------------VSFILAGGPADLSG 56
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
+R+GDRIL+VN VN+ ATH+Q +K G +++ PEE R E SG
Sbjct: 57 ELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA-QYRPEEYSRFESSGPSSG 113
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 104 bits (261), Expect = 8e-28
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
Q+ PR ++ + GF +RG AP+Q V + +A AG R+
Sbjct: 21 QSMPRSIRFTAEEGDLGFTLRGN---------------APVQ-VHFLDPYCSASVAGARE 64
Query: 66 GDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEA 108
GD I+++ V+ + T +V++L+KS G D + + V+S+ E
Sbjct: 65 GDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVT 108
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 104 bits (261), Expect = 1e-27
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ I + G G ++ G G ++ +S V G A +AG+R GD+
Sbjct: 16 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEG-IF-----ISRVSEEGPAARAGVRVGDK 69
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+L VN V ++GA H + VE ++ G + + V
Sbjct: 70 LLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 102 bits (257), Expect = 2e-27
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
+ ++ I + GFGF + +P V AV +GG AE+AG
Sbjct: 10 DPENGEKLQITIRRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAG 53
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
+++ D +L +N VE ++ I+S + L V VS +
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSS 99
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 101 bits (253), Expect = 1e-26
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 15/105 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
PR + I + TG GFN+ G GE + +S +LAGG A+ +G +RKGD
Sbjct: 12 PRRIVIHRGSTGLGFNIVG------------GEXGEGI-FISFILAGGPADLSGELRKGD 58
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
+IL+VN V++ A+H+Q +K+ G +++ PEE R E
Sbjct: 59 QILSVNGVDLRNASHEQAAIALKNAGQTVTIIA-QYKPEEYSRFE 102
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 100 bits (252), Expect = 1e-26
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ I + G G ++ G G ++ +S V G A +AG+R GD+
Sbjct: 4 ELTLTILRQTGGLGISIAGGKGSTPYKGDDEG-IF-----ISRVSEEGPAARAGVRVGDK 57
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+L VN V ++GA H + VE ++ G + + V
Sbjct: 58 LLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 102 bits (254), Expect = 2e-26
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 6 QTGPREVQIAKSDTG----FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
Q+ + V+I K G GF++ G + + + + +V+ V GG AE A
Sbjct: 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTVISVSPEEAER 110
G++ GD+I+ VN ++ TH Q + + +V+ L V S ++A +
Sbjct: 81 GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQ 130
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 100 bits (252), Expect = 2e-26
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
PR + I + TG GFN+ G G +S +LAGG A+ +G +RKGD
Sbjct: 15 PRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 61
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE--PPDDHSGYQQID 124
+IL+VN V++ A+H+Q +K+ G +++ PEE R E D SG D
Sbjct: 62 QILSVNGVDLRNASHEQAAIALKNAGQTVTIIA-QYKPEEYSRFEANSRVDSSGRIVTD 119
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 99.4 bits (248), Expect = 6e-26
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
S+ +V I + + GFGF + R +G + ++ G A++
Sbjct: 5 SSGSLQTSDVVIHRKENEGFGFVIIS-----SLNRPESGSTITVPHKIGRIIDGSPADRC 59
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
++ GDRILAVN ++ H +V+LIK G ++L + + EE P
Sbjct: 60 AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI--IPQEELNSPSGP 111
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 99.5 bits (248), Expect = 7e-26
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+ PR V+I + G ++ G + +L+ NGE + + VL A K
Sbjct: 10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLK--NGEELKGI-FIKQVLEDSPAGKT 66
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
++ GD+IL V+ V+++ A+H + VE IK+ G+ + V S+S
Sbjct: 67 NALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 97.6 bits (243), Expect = 3e-25
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 14/118 (11%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
++ ++V I+ G G ++ G + P +S V G + +
Sbjct: 10 GNRENKEKKVFISLVGSRGLGCSISS------------GPIQKPGIFISHVKPGSLSAEV 57
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
G+ GD+I+ VN V+ HK+ V ++KS L++++++ + E + SG
Sbjct: 58 GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGRELFMTDRSGPSSG 114
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 96.6 bits (241), Expect = 3e-25
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
V I K GFGF + GGQ V ++ + G+++GD
Sbjct: 4 LITVHIVKGPMGFGFTIADSPGGGGQ-------------RVKQIV--DSPRSRGLKEGDL 48
Query: 69 ILAVNNVNVEGATHKQVVELIKSG--GDVLSLTV 100
I+ VN NV+ TH QVV+++ G ++L V
Sbjct: 49 IVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLV 82
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 97.0 bits (242), Expect = 4e-25
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 7/98 (7%)
Query: 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG- 62
+ EV++AK+D G +V +GG S+ +G +Y V AV+ GAAE G
Sbjct: 6 KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIY-----VKAVIPQGAAESDGR 60
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
I KGDR+LAVN V++EGATHKQ VE +++ G V+ L +
Sbjct: 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 97.6 bits (243), Expect = 5e-25
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 8 GPREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IR 64
R V++ K ++ GF +R S + +G P +S ++ GG A+ G +
Sbjct: 29 THRRVRLCKYGTEKPLGFYIRDGSSVRV---TPHGLEKVPGIFISRLVPGGLAQSTGLLA 85
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
D +L VN + V G + QV +++ + L +TV +
Sbjct: 86 VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 97.5 bits (243), Expect = 5e-25
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
PR V++ K G ++ +GG VS V G A +AG+ GD+
Sbjct: 20 PRHVKVQKGSEPLGISIVSG-EKGGIY-------------VSKVTVGSIAHQAGLEYGDQ 65
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+L N +N+ AT +Q +I D +++
Sbjct: 66 LLEFNGINLRSATEQQARLIIGQQCDTITILA 97
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 95.8 bits (239), Expect = 8e-25
Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
V++ K+D G GFN+ G + + ++S V+ GG A++ G +++GD
Sbjct: 6 SGVVELPKTDEGLGFNIMGGKEQNSPI------------YISRVIPGGVADRHGGLKRGD 53
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
++L+VN V+VEG H++ VEL+K+ + L V S
Sbjct: 54 QLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 95.5 bits (238), Expect = 1e-24
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 9 PREVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
+V + K FGF S+ L +V + G + G++
Sbjct: 7 LHKVTLYKDSGMEDFGF-------------SVADGLLEKGVYVKNIRPAGPGDLGGLKPY 53
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
DR+L VN+V VV LI G+ L L +
Sbjct: 54 DRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 93.9 bits (234), Expect = 3e-24
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 9 PREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PR + + K TG GF + +++++ +A + G+
Sbjct: 5 PRTITMHKDSTGHVGFIFKNGK-------------------ITSIVKDSSAARNGLLTEH 45
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
I +N NV G Q+ +++ + G V+++T++
Sbjct: 46 NICEINGQNVIGLKDSQIADILSTSGTVVTITIM 79
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 94.2 bits (235), Expect = 3e-24
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 18/111 (16%)
Query: 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-I 63
+ EV++AK+D G +V G V+ + I +V AV+ GAAE G I
Sbjct: 2 KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGI---------YVKAVIPQGAAESDGRI 52
Query: 64 RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
KGDR+LAVN V++EGATHKQ VE +++ G V+ L + E+ + P
Sbjct: 53 HKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL--------EKGQSP 95
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 93.6 bits (233), Expect = 7e-24
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 3 STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
S+ V++ KS G GF+VRG G + VS V G +AE+A
Sbjct: 5 SSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGI------------FVSKVEEGSSAERA 52
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
G+ GD+I VN +++E T V+++ S + + V +
Sbjct: 53 GLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRL-HMMVRRMGS 95
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 96.2 bits (239), Expect = 8e-24
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 1 MYSTQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
+ + +EV++ + G G +VRG + G L +S ++ GG A+
Sbjct: 77 LTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGL------------FISHLIKGGQAD 124
Query: 60 KAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
G++ GD I+ +N ++ TH++V+ LI++ V S+ V + PD+
Sbjct: 125 SVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTV-SIKVRHIGL--IPVKSSPDEPLT 181
Query: 120 YQQID 124
+Q +D
Sbjct: 182 WQYVD 186
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 92.8 bits (231), Expect = 1e-23
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 5 QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
Q PR V++ + + G ++ G G +L NGE+ + + VL A K G
Sbjct: 1 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLS--NGEVMRGI-FIKHVLEDSPAGKNGT 57
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
++ GDRI+ V+ +++ A+H+Q VE I+ G+ + V S+
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 92.5 bits (230), Expect = 3e-23
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
Q PR V++ + G ++ G G R NGE+ + + VL A K
Sbjct: 19 YFQSMQPRRVELWREPSKSLGISIVG--GRGMGSRLSNGEVMRGI-FIKHVLEDSPAGKN 75
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
G ++ GDRI+ V+ +++ A+H+Q VE I+ G+ + V S+
Sbjct: 76 GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 92.0 bits (229), Expect = 3e-23
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
V++ + +G G + + + ++ +L G A G + GDRI
Sbjct: 11 TVELERGPSGLGMGLIDGMHTHLGAPGL---------YIQTLLPGSPAAADGRLSLGDRI 61
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
L VN ++ G + + V+LI+ GG + V E A+++ SG
Sbjct: 62 LEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPS-SG 110
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 91.6 bits (228), Expect = 4e-23
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S+ +G +A+S+ G GF++ G G+ + A + VS + GGAA +AG
Sbjct: 2 SSGSSGRHVACLARSERGLGFSIAG-----GKGSTPYRAGDAGI-FVSRIAEGGAAHRAG 55
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
++ GDR+L++N V+V A H V L+ + ++L + ER SG
Sbjct: 56 TLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL--------EREAGSGPSSG 105
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 90.5 bits (225), Expect = 9e-23
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 3 STQQTGPREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
S R V + + + G GF++RG G + +VS V G AEK
Sbjct: 3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGI------------YVSLVEPGSLAEK 50
Query: 61 AGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
G+R GD+IL VN+ ++ TH + V+ +K + L+V S
Sbjct: 51 EGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKL-VLSVYSAGR 94
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 90.2 bits (224), Expect = 1e-22
Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 22/107 (20%)
Query: 1 MYSTQQTGPREVQIAK---SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGA 57
+ + G + + GF+V+ + + +++ GG
Sbjct: 3 HHHLETMGNVTTVLIRRPDLRYQLGFSVQNGI-------------------ICSLMRGGI 43
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
AE+ G+R G RI+ +N +V H+++V ++ + + + + +
Sbjct: 44 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 90.1 bits (224), Expect = 1e-22
Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
+ +++ K+ G ++ G + V+ ++ GGAA+++G I GD
Sbjct: 5 VKIIRLVKNREPLGATIKKDEQTGAII-------------VARIMRGGAADRSGLIHVGD 51
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
+ VN + VE +++++++ ++ +I S EE
Sbjct: 52 ELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSKEE 91
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 90.4 bits (225), Expect = 1e-22
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S Q +G V++ + GFG + G G+ + + L V +L G A++ G
Sbjct: 6 SGQASGHFSVELVRGYAGFGLTLGG-----GRDVAGDTPLA-----VRGLLKDGPAQRCG 55
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ GD +L +N + +G TH Q VE I++GG L L +
Sbjct: 56 RLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 89.7 bits (223), Expect = 3e-22
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
V++ K + G G ++ G G ++ V V GGAA++ G I+ D+I
Sbjct: 12 PVELEKDEDGLGISIIGMGVGADAGLEKLG-IF-----VKTVTEGGAAQRDGRIQVNDQI 65
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
+ V+ +++ G T ++++ + + R +P SG
Sbjct: 66 VEVDGISLVGVTQNFAATVLRNTKGNVRFVI--------GREKPSGPSSG 107
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 88.5 bits (220), Expect = 4e-22
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
P V + + +GF + G G+ + APL +S V AG A A + GD
Sbjct: 9 PHSVTLRG-PSPWGFRLVG-----GR------DFSAPLT-ISRVHAGSKAALAALCPGDL 55
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
I A+N + E TH + IK D L+L+V
Sbjct: 56 IQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 89.5 bits (222), Expect = 5e-22
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 1 MYSTQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
++ Q ++V + D G +RG G Y +++ V G AE
Sbjct: 13 LHLLQGGDEKKVNLVLGDGRSLGLTIRG------------GAEYGLGIYITGVDPGSEAE 60
Query: 60 KAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
+G++ GD+IL VN + H + V L+KS + LTV V R +
Sbjct: 61 GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHL-ILTVKDVGRLPHARTTVDE 115
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 88.7 bits (220), Expect = 7e-22
Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
+GP V+I K+ + G ++ I + + +++G
Sbjct: 11 ANASGPLMVEIVKTPGSALGISLTTTSLRNKS--VI---------TIDRIKPASVVDRSG 59
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHS 118
+ GD IL+++ ++E + + +L+ S + + L ++ P+ L P S
Sbjct: 60 ALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP-VPQSQRPLRPSSGPS 115
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 87.0 bits (216), Expect = 2e-21
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 6 QTGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
Q PR V + K GFN+RG G+ +S V+ A +AG++
Sbjct: 13 QFLPRIVTLKKPPGAQLGFNIRG------------GKASQLGIFISKVIPDSDAHRAGLQ 60
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+GD++LAVN+V+ + H + VE++K+ ++ S+ V
Sbjct: 61 EGDQVLAVNDVDFQDIEHSKAVEILKTAREI-SMRV 95
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 86.7 bits (215), Expect = 3e-21
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
+GF ++G G+ + PL +S++ GG A +A +R GD +L+++ ++ +G
Sbjct: 16 PWGFRLQG-----GK------DFNMPLT-ISSLKDGGKASQAHVRIGDVVLSIDGISAQG 63
Query: 80 ATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
TH + IK+ L++T+ S SG
Sbjct: 64 MTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSSGPSSG 103
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 86.7 bits (215), Expect = 3e-21
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 9 PREVQIAKSDTGFGFNVRG-QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
+ + + GFN+ G + S S + ++ VS ++ G A K G ++
Sbjct: 9 SLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIF-----VSKIVDSGPAAKEGGLQIH 63
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
DRI+ VN ++ ATH Q VE K+ + + + V
Sbjct: 64 DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 85.9 bits (213), Expect = 5e-21
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 1 MYSTQQTGP-REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
M +Q GP R+V + K D G G ++ G G + +S + G A
Sbjct: 1 MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPIL------------ISEIHPGQPA 48
Query: 59 EKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
++ G + GD ILAVN VN+ HK+ V ++ + V+ V+ E
Sbjct: 49 DRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHH 100
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 85.8 bits (213), Expect = 5e-21
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
++I+K TG G ++ G ++ G + + V GAA K G + GD
Sbjct: 5 ETTIEISKGRTGLGLSIVGGSD------TLLGAII-----IHEVYEEGAACKDGRLWAGD 53
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERL 111
+IL VN +++ ATH + + +++ + LT+ +P ++ RL
Sbjct: 54 QILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTRL 98
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 85.8 bits (213), Expect = 5e-21
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S Q V + K GFGF++RG L +V + G A + G
Sbjct: 6 SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDL------------YVLRLAEDGPAIRNG 53
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+R GD+I+ +N + TH + +ELIKSGG + L +
Sbjct: 54 RMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 85.9 bits (213), Expect = 6e-21
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
Q V++ + GFGF++RG L +V + G AE++G
Sbjct: 19 YFQSMDFYTVELERGAKGFGFSLRGGREYNMDL------------YVLRLAEDGPAERSG 66
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+R GD IL +N + H + +ELIK+GG + L +
Sbjct: 67 KMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 85.0 bits (211), Expect = 7e-21
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
V + +GF ++G + PL +S + G A ++ + +GD
Sbjct: 2 AYSVTLTG-PGPWGFRLQGGK-----------DFNMPLT-ISRITPGSKAAQSQLSQGDL 48
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
++A++ VN + TH + IKS LSLT+
Sbjct: 49 VVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 86.0 bits (213), Expect = 7e-21
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
E+ + + +G GFN+ G Q S + +Y VS + GAA G +++GD
Sbjct: 18 EEEINLTRGPSGLGFNIVGGT--DQQYVSNDSGIY-----VSRIKENGAAALDGRLQEGD 70
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
+IL+VN +++ H+ V+L ++ G +SL V + + P
Sbjct: 71 KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGP 117
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 85.5 bits (212), Expect = 8e-21
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
E+ + + +G GFN+ G Q S + +Y VS + GAA G +++GD
Sbjct: 8 EEEINLTRGPSGLGFNIVGGT--DQQYVSNDSGIY-----VSRIKENGAAALDGRLQEGD 60
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+IL+VN +++ H+ V+L ++ G +SL V
Sbjct: 61 KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 85.1 bits (211), Expect = 8e-21
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
+ V++ + G + G + +S++ GG AE+ G
Sbjct: 1 SSGAIIYTVELKRYGGPLGITISGTEEPFDPII------------ISSLTKGGLAERTGA 48
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
I GDRILA+N+ +++G + + L++ G+ ++L +
Sbjct: 49 IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIK 87
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 88.3 bits (219), Expect = 8e-21
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
E+ + + ++G GF++ G + ++ ++ ++ GGAA + G +R D
Sbjct: 6 YEEITLERGNSGLGFSIAGGT--DNPHIGDDPSIF-----ITKIIPGGAAAQDGRLRVND 58
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
IL VN V+V TH VE +K G ++ L V
Sbjct: 59 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 91
Score = 79.8 bits (197), Expect = 9e-18
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
E+++ K G GF++ G G Q + +Y V+ ++ GGAA K
Sbjct: 94 RKPPAEKVMEIKLIKGPKGLGFSIAG--GVGNQHIPGDNSIY-----VTKIIEGGAAHKD 146
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
G ++ GD+ILAVN+V +E H+ V +K+ DV+ L V
Sbjct: 147 GRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 85.9 bits (213), Expect = 1e-20
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 9 PREVQIAKSDT-GFGFNVRGQV--SEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IR 64
V++ + D G + G V S G+ I +V +V+ G AA G I+
Sbjct: 16 TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGI---------YVKSVIPGSAAYHNGHIQ 66
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERLEPPDDHS 118
D+I+AV+ VN++G + VVE++++ G V+ LT++ + LEPP D
Sbjct: 67 VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRG 121
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 85.7 bits (212), Expect = 1e-20
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 17/122 (13%)
Query: 3 STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+++ + G FGFNV+G + + VS V G A+
Sbjct: 10 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVI------------VSRVAPGTPADLC 57
Query: 62 --GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAER-LEPPDDH 117
+ +GD+++ +N ++ TH QVV IK+ + S ++ V P +E
Sbjct: 58 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPS 117
Query: 118 SG 119
SG
Sbjct: 118 SG 119
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 85.5 bits (212), Expect = 1e-20
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 1 MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
+Y + + + + G GF++ G I +V V A GAA +
Sbjct: 18 LYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPI---------YVKTVFAKGAASE 68
Query: 61 AG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
G +++GD+I+AVN ++EG TH++ V ++K ++L V+S
Sbjct: 69 DGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 84.7 bits (210), Expect = 1e-20
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 16 KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNV 75
+GF + G + + PL ++ + G A A + GD ILA++
Sbjct: 12 PGPAPWGFRLSGGI-----------DFNQPLV-ITRITPGSKAAAANLCPGDVILAIDGF 59
Query: 76 NVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
E TH + IK+ L L + SG
Sbjct: 60 GTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQVSSGPSSG 103
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 85.1 bits (211), Expect = 2e-20
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 12/107 (11%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
++I+K +G G ++ G + + + V GAA + G + GD
Sbjct: 18 EMIIEISKGRSGLGLSIVGGKD------TPLNAIV-----IHEVYEEGAAARDGRLWAGD 66
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
+IL VN V++ ++H++ + ++ + L V + P
Sbjct: 67 QILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGP 113
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 84.8 bits (210), Expect = 2e-20
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 5 QQTGPREVQIAKSDTGF-GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
Q P +V + K G ++ G G Y P ++ V A G
Sbjct: 21 QSMVPGKVTLQKDAQNLIGISIGG------------GAQYCPCLYIVQVFDNTPAALDGT 68
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
+ GD I VN +++G T +V ++I+ +++ +
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 111
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 84.7 bits (209), Expect = 2e-20
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 16/111 (14%)
Query: 8 GPREVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
+ + I KSDT +GF++ +G + LY V++V G A K G++
Sbjct: 15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIR------RLY-----VNSVKETGLASKKGLK 63
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
GD IL +NN + + + + L L V + E P
Sbjct: 64 AGDEILEINNRAADALNSSMLKDFLSQPS--LGLLVRTYPELEEGVESGPS 112
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 87.1 bits (216), Expect = 2e-20
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
G V++ K + T G V G + + G+ R VS + GG A ++ +
Sbjct: 7 GSTVVELMKKEGTTLGLTVSGGIDKDGKPR------------VSNLRQGGIAARSDQLDV 54
Query: 66 GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDH 117
GD I AVN +N+ H +++ L+K+ G+ + L V P + +
Sbjct: 55 GDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFR 106
Score = 85.6 bits (212), Expect = 7e-20
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-I 63
EV + K FGF +RG G N ++ V GG A++ G I
Sbjct: 103 VMFRTVEVTLHKEGNTFGFVIRG-----GAHDDRNKS---RPVVITCVRPGGPADREGTI 154
Query: 64 RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ GDR+L+V+ + + G TH + + ++K G +L +
Sbjct: 155 KPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 84.0 bits (208), Expect = 2e-20
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
S+ Q + I K GFGF + S GQ V +L G
Sbjct: 5 SSGQAELMTLTIVKGAQGFGFTIAD--SPTGQ-------------RVKQILDIQGC--PG 47
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVISVSP 105
+ +GD I+ +N NV+ +H +VV+++K G SL + S
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 84.3 bits (209), Expect = 3e-20
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
+ EV++ +G GF + G + G + V ++ GG A++ G
Sbjct: 10 TVCWGHVEEVELINDGSGLGFGIVGGKTSG---------VV-----VRTIVPGGLADRDG 55
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
++ GD IL + NV+G T +QV +++++ G+ + + V
Sbjct: 56 RLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLV 94
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 83.8 bits (208), Expect = 3e-20
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
EV + K FGF +RG G N P+ +++V GG A++ G I+ GDR+
Sbjct: 6 EVTLHKEGNTFGFVIRG-----GAHDDRNKSR--PV-VITSVRPGGPADREGTIKPGDRL 57
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L+V+ + + G TH + + ++K G +L +
Sbjct: 58 LSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 83.6 bits (207), Expect = 3e-20
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 19/94 (20%)
Query: 9 PREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
V+I K +GF++ PL V AV AGG+A + G
Sbjct: 9 RHTVKIDKDTLLQDYGFHISES---------------LPL-TVVAVTAGGSAH-GKLFPG 51
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
D+IL +NN E + ++ V++++ D LS+TV
Sbjct: 52 DQILQMNNEPAEDLSWERAVDILREAEDSLSITV 85
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 83.5 bits (207), Expect = 3e-20
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
+V++ K+ G G + G + G + ++ V ++ A E G I+ GD+I
Sbjct: 7 DVELTKNVQGLGITIAGYI---GDKKLEPSGIF-----VKSITKSSAVEHDGRIQIGDQI 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+AV+ N++G T++Q VE+++ G + LT+
Sbjct: 59 IAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 84.0 bits (208), Expect = 3e-20
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
V++ K G G ++ G + G ++ V V GGAA + G I+ D +
Sbjct: 7 PVELEKDSEGLGISIIGMGAGADMGLEKLG-IF-----VKTVTEGGAAHRDGRIQVNDLL 60
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
+ V+ ++ G T ++++ + + P E +
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVA 103
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 84.3 bits (209), Expect = 3e-20
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 3 STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
Q G R V++ K T G ++ G V I ++ + G A +
Sbjct: 19 YFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPI---------FIAMMHPTGVAAQT 69
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
+R GDRI+ + + EG TH Q V L+K+ + + V++
Sbjct: 70 QKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 82.7 bits (205), Expect = 5e-20
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 6 QTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
+G + + + +GF + G G+ + + P+ V+ V G AE A +R
Sbjct: 2 SSGSSGLTVDVAGPAPWGFRISG-----GR------DFHTPII-VTKVTERGKAEAADLR 49
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
GD I+A+N + E H + I+ L L +
Sbjct: 50 PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 83.2 bits (206), Expect = 6e-20
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA K G ++ GD+
Sbjct: 5 MEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDK 57
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+LAVN+V++E TH++ V +K+ D + L V
Sbjct: 58 LLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 84.1 bits (208), Expect = 6e-20
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
ST + V + K G GF++ G G + L ++ + G A+E++
Sbjct: 24 STAEATVCTVTLEKMSAGLGFSLEG----GKGSLHGDKPLT-----INRIFKGAASEQSE 74
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKSGGD-VLSLTVISVSPEEAERLEPPD 115
++ GD IL + ++G T + +IK+ D +++ + S + E D
Sbjct: 75 TVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGD 129
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 82.7 bits (205), Expect = 6e-20
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 8/92 (8%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
EV + K G GF++ G + G Q + +Y ++ ++ GGAA+K G ++ GDR
Sbjct: 5 MEVNLLKGPKGLGFSIAGGI--GNQHIPGDNSIY-----ITKIIEGGAAQKDGRLQIGDR 57
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+LAVNN N++ H++ V +K+ D++ L V
Sbjct: 58 LLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 82.3 bits (204), Expect = 7e-20
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 18 DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNV 77
+GF ++G G+ + PL +S++ GG A +A +R GD +L+++ +N
Sbjct: 12 PAPWGFRLQG-----GK------DFNMPLT-ISSLKDGGKAAQANVRIGDVVLSIDGINA 59
Query: 78 EGATHKQVVELIKSGGDVLSLTV 100
+G TH + IK L++T+
Sbjct: 60 QGMTHLEAQNKIKGCTGSLNMTL 82
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 83.2 bits (206), Expect = 7e-20
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGEL--YAPLQHVSAVLAGGAAE 59
+ G RE+ I K+ G ++RG + + +S V GAA
Sbjct: 4 GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIF-----ISKVSPTGAAG 58
Query: 60 KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ G +R G R+L VN ++ G TH + V+L++S GD L++ V
Sbjct: 59 RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 83.4 bits (206), Expect = 8e-20
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
T EV + TGFG ++G V L S PL +S + A AE+
Sbjct: 10 QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSS------PPL--ISYIEADSPAERC 61
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
G ++ GDR++A+N + E +T ++ +L++ +T+ + + AE + P
Sbjct: 62 GVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL-EIEFDVAESVIPS 114
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 82.6 bits (204), Expect = 9e-20
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 3 STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+++ + G FGFNV+G + + VS V G A+
Sbjct: 12 GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVI------------VSRVAPGTPADLC 59
Query: 62 --GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
+ +GD+++ +N ++ TH QVV IK+ + S ++
Sbjct: 60 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 82.4 bits (204), Expect = 1e-19
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
+V + + ++GFGF + G G + + AV+A G+A++ G + GD
Sbjct: 11 LDVHLRRMESGFGFRILGGDEPGQPIL------------IGAVIAMGSADRDGRLHPGDE 58
Query: 69 ILAVNNVNVEGATHKQVVELIKSGG--DVLSLTV 100
++ V+ + V G TH+ V++L+ ++LTV
Sbjct: 59 LVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 81.5 bits (202), Expect = 1e-19
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
V + +GF + G + + P+ V+ V G A+ A +R GD
Sbjct: 3 ALTVDV-AGPAPWGFRITGGR-----------DFHTPIM-VTKVAERGKAKDADLRPGDI 49
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
I+A+N + EG H + I+ L L +
Sbjct: 50 IVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 81
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 82.8 bits (205), Expect = 1e-19
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+++ K G GF++ G V G Q + +Y V+ ++ GGAA+K G ++ GDR+
Sbjct: 27 EIKLFKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIDGGAAQKDGRLQVGDRL 79
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L VNN ++E TH++ V ++K+ +V+ L V
Sbjct: 80 LMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 81.7 bits (202), Expect = 1e-19
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 17 SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVN 76
FGF ++ P V++V AG AE + ++ D I+A+NN
Sbjct: 15 KSLDFGFTIKWD---------------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTK 59
Query: 77 VEGATHKQVVELIKSGGDVLSLTV 100
K+ E + + L +
Sbjct: 60 FSYNDSKEWEEAMAKAQETGHLVM 83
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 82.0 bits (203), Expect = 2e-19
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 1 MYSTQQTGPR-EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
+Y+T++ G R +Q+ K G GF++ + G I +V +L GAA
Sbjct: 3 VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPI---------YVKNILPRGAAI 53
Query: 60 KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
+ G ++ GDR++ VN V++ G + ++VV L++S +++++ EEA +
Sbjct: 54 QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPREMN 110
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 81.6 bits (202), Expect = 2e-19
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 10 REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
V + K+ FG + G+++ + + ++ A G ++ GD
Sbjct: 7 HMVTLDKTGKKSFGICIVR-----GEVKDSPNTKTTGI-FIKGIVPDSPAHLCGRLKVGD 60
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
RIL++N +V +T + V++LIK + L + + ++
Sbjct: 61 RILSLNGKDVRNSTEQAVIDLIKEADFKIELEI--QTFDK 98
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 81.2 bits (201), Expect = 2e-19
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 16 KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNV 75
+ +GF ++G + PL +S + GG A +AG+ GD +L+++
Sbjct: 10 EGPAPWGFRLQGGK-----------DFNVPLS-ISRLTPGGKAAQAGVAVGDWVLSIDGE 57
Query: 76 NVEGATHKQVVELIKSGGDVLSLTV 100
N TH + I++ G+ LSL +
Sbjct: 58 NAGSLTHIEAQNKIRACGERLSLGL 82
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 81.2 bits (201), Expect = 2e-19
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+ + + ++G GF++ G + + ++ ++ ++ GGAA G + D +
Sbjct: 7 EIVLERGNSGLGFSIAGGI--DNPHVPDDPGIF-----ITKIIPGGAAAMDGRLGVNDCV 59
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L VN V+V H + VE +K G V+ L V
Sbjct: 60 LRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 81.7 bits (202), Expect = 3e-19
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 16 KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNN 74
S G G + G G ++ +GE+ A +++ +L GG+AE+ G + +G ++L N
Sbjct: 27 VSGNGLGIRIVG----GKEIPGHSGEIGA---YIAKILPGGSAEQTGKLMEGMQVLEWNG 79
Query: 75 VNVEGATHKQVVELIKSGGDVLSLTV 100
+ + T+++V +I + V
Sbjct: 80 IPLTSKTYEEVQSIISQQSGEAEICV 105
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 81.4 bits (201), Expect = 3e-19
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 1 MYSTQQTGPR--EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
M + + + + K GFGF + S G Q V +L
Sbjct: 3 MATLYKKAGLLVTIPLIKGPKGFGFAIAD---------SPTG------QKVKMILDSQWC 47
Query: 59 EKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDD 116
G++KGD I + + NV+ TH QVVE++K G + L ++ P +
Sbjct: 48 --QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGS 105
Query: 117 HSG 119
SG
Sbjct: 106 GSG 108
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 81.2 bits (201), Expect = 3e-19
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
E+ K + G ++ G +Y V +++ G AA G I D+I
Sbjct: 17 ELFREKDTSSLGISISGMR--DQSTTGEATGIY-----VKSLIPGSAAALDGRIEPNDKI 69
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L V++VNV+G VVE++++ G+ + L +
Sbjct: 70 LRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 81.8 bits (202), Expect = 4e-19
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 3 STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+ V++ K G GF V+ +VS+ + +S ++ GGAAE++
Sbjct: 3 HMIEPNVISVRLFKRKVGGLGFLVKERVSKPP--------VI-----ISDLIRGGAAEQS 49
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGY 120
G I+ GD ILAVN+ + ++ +E+++ + +I PE +
Sbjct: 50 GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF--TTHLETTFTG 107
Query: 121 QQIDYTEKRSLPISIPDYS 139
T + + P+ P +
Sbjct: 108 DGTPKTIRVTQPLGPPTKA 126
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 80.9 bits (200), Expect = 5e-19
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
Q + V I K G V G S I +V +V GG + G
Sbjct: 21 QSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPI---------YVISVEPGGVISRDGR 71
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
I+ GD +L V+ V + + + V L+K + L + V
Sbjct: 72 IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 80.0 bits (198), Expect = 6e-19
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 9 PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
R V + K+D G G +++G + +S + G AA++ + G
Sbjct: 5 RRRVTVRKADAGGLGISIKGGRENKMPIL------------ISKIFKGLAADQTEALFVG 52
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
D IL+VN ++ ATH + V+ +K G + L V
Sbjct: 53 DAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 80.6 bits (199), Expect = 6e-19
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+ G R+V + K D G G ++ G G + +S + G A++
Sbjct: 22 NLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPIL------------ISEIHPGQPADRC 69
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
G + GD ILAVN VN+ HK+ V ++ + V
Sbjct: 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 81.0 bits (200), Expect = 6e-19
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
++ KS GFGF V G LQ + +++ G A G + GD
Sbjct: 20 IHTKLRKSSRGFGFTVVGGDEPDE-----------FLQ-IKSLVLDGPAALDGKMETGDV 67
Query: 69 ILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDD 116
I++VN+ V G TH QVV++ +S G + L + P + +P
Sbjct: 68 IVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTS 117
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 80.6 bits (199), Expect = 7e-19
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 12/114 (10%)
Query: 2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
Y+ +++ K G G ++ G ++ V + G A
Sbjct: 19 YADLPGELHIIELEKDKNGLGLSLAGNKDRS------RMSIF-----VVGINPEGPAAAD 67
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
G +R GD +L +NN + G +H+ +IK+ + L I + P
Sbjct: 68 GRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGP 121
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 81.9 bits (202), Expect = 8e-19
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
V++ K G G ++ G + G ++ V V GGAA + G I+ D +
Sbjct: 83 PVELEKDSEGLGISIIGMGAGADMGLEKLG-IF-----VKTVTEGGAAHRDGRIQVNDLL 136
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ V+ ++ G T ++++ + +
Sbjct: 137 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 80.5 bits (199), Expect = 9e-19
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
+ KS+ GFGF + G LQ V +V+ G A + G + GD
Sbjct: 21 LSTTLKKSNMGFGFTIIGGDEPDE-----------FLQ-VKSVIPDGPAAQDGKMETGDV 68
Query: 69 ILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPD 115
I+ +N V V G TH VV+L +S G ++L + P + +P +
Sbjct: 69 IVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 78.9 bits (195), Expect = 1e-18
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 18 DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNV 77
+GF + G + PL +S V G A A + GD I A++ N
Sbjct: 12 PGPWGFRLVGGK-----------DFEQPLA-ISRVTPGSKAALANLCIGDVITAIDGENT 59
Query: 78 EGATHKQVVELIKSGGDVLSLTV 100
TH + IK D L+LTV
Sbjct: 60 SNMTHLEAQNRIKGCTDNLTLTV 82
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 82.1 bits (203), Expect = 1e-18
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
EV + TGFG ++G V L + +S + A AE+ G ++ G
Sbjct: 7 TTEVVLTADPVTGFGIQLQGSVFATETL---SSPPL-----ISYIEADSPAERCGVLQIG 58
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYT 126
DR++A+N + E +T ++ +L++ +T+ + P + + ++
Sbjct: 59 DRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL--EIEFDVAESVIPSSGTFHVKLPKK 116
Query: 127 EKRSLPISI 135
L I+I
Sbjct: 117 HSVELGITI 125
Score = 76.7 bits (189), Expect = 9e-17
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
V++ K G + R L +S + G A + G + GD
Sbjct: 109 FHVKLPKKHSVELGITISS-----PSSRKPGDPLV-----ISDIKKGSVAHRTGTLELGD 158
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
++LA++N+ ++ + + V++++ D++ L +
Sbjct: 159 KLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 79.3 bits (196), Expect = 1e-18
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 1 MYSTQQTGPREVQIA-KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
+ P + + K G G ++ G I +V +V+ GGAA+
Sbjct: 2 PLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGI---------YVKSVVKGGAAD 52
Query: 60 KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
G + GD++L+V+ ++ G + ++ EL+ V++L V
Sbjct: 53 VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 79.0 bits (195), Expect = 1e-18
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 8 GPREVQIAKS-DTGFGFNVRGQV-SEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
G E+++ D GF++ G V G R + ++ V+ V G A K ++
Sbjct: 1 GSMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL-LQP 54
Query: 66 GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
GD+I+ N + H Q V L+K+ + + L +
Sbjct: 55 GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 89
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 79.8 bits (197), Expect = 1e-18
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
+ + G GF++ G + + I V V G A + G I+KG+ +
Sbjct: 19 TILHKEEGAGLGFSLAG--GADLENKVI---------TVHRVFPNGLASQEGTIQKGNEV 67
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS--VSPEEAERLEPPDDHSG 119
L++N +++G TH + +++ + +++ ++PE L SG
Sbjct: 68 LSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGPSSG 119
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 79.4 bits (196), Expect = 2e-18
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
V++ K G GF V+ +VS+ + +S ++ GGAAE++G I+ GD
Sbjct: 3 ISVRLFKRKVGGLGFLVKERVSKPPVI-------------ISDLIRGGAAEQSGLIQAGD 49
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA-ERLEPPDDHSG 119
ILAVN+ + ++ +E+++ + +I PE LE G
Sbjct: 50 IILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDG 102
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 79.0 bits (195), Expect = 2e-18
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
V++ KS G + G G PL + + GG+A G ++ G
Sbjct: 8 TLVRVKKSAATLGIAIEG-----GA------NTRQPLPRIVTIQRGGSAHNCGQLKVGHV 56
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
IL VN + + G H++ +I I
Sbjct: 57 ILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDF 91
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 78.5 bits (194), Expect = 2e-18
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
++ KS GFGF V G LQ + +++ G A G + GD I
Sbjct: 3 HTKLRKSSRGFGFTVVGGDEPDE-----------FLQ-IKSLVLDGPAALDGKMETGDVI 50
Query: 70 LAVNNVNVEGATHKQVVELIKS--GGDVLSLTV 100
++VN+ V G TH QVV++ +S G + L +
Sbjct: 51 VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLEL 83
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 79.0 bits (195), Expect = 2e-18
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 10 REVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
+ V+I K+ D G VR + + +S ++ GGAAEK+G + +GD
Sbjct: 27 KIVRIEKARDIPLGATVRNE----------MDSVI-----ISRIVKGGAAEKSGLLHEGD 71
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
+L +N + + G +V +L+ L+ +I
Sbjct: 72 EVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 79.5 bits (196), Expect = 2e-18
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 18/112 (16%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
+ ++ + G G V P +S ++ GAA G ++ GD +
Sbjct: 30 QTKLTVGNLGLGLVVIQN---------------GPYLQISHLINKGAAASDGILQPGDVL 74
Query: 70 LAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDDHSG 119
++V + NV G T ++ ++L+++ G VL + E + + SG
Sbjct: 75 ISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 78.6 bits (194), Expect = 3e-18
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 9 PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
V + + GFG + G + +S + +S VL GG AE +++ D
Sbjct: 8 QHTVTLHRAPGFGFGIAISGGR-DNPHFQSGETSIV-----ISDVLKGGPAE-GQLQEND 60
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
R+ VN V+++ H V+ ++ G +T+
Sbjct: 61 RVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 78.6 bits (194), Expect = 3e-18
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 1 MYSTQQTGPREVQI--AKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
M+S +Q ++V++ K + + EGG S G++ VSAV GGAA
Sbjct: 8 MFSPEQIAGKDVRLLRIKKEGSLDLAL-----EGGV-DSPVGKVV-----VSAVYEGGAA 56
Query: 59 EKAG-IRKGDRILAVNNVNVEGATHKQVVELIK----SGGDVLSLTVISVSPEEAE 109
E+ G + KGD I+A+N V T + ++ GGD + L V P+E +
Sbjct: 57 ERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYD 112
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 77.7 bits (192), Expect = 4e-18
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 10 REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
+ + K G G ++ G+ ++ G ++ VS ++ GG A+ G + +GD
Sbjct: 6 LTIGLQKKPGKGLGLSIVGKRNDTG--------VF-----VSDIVKGGIADADGRLMQGD 52
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+IL VN +V AT + V L+K ++L V
Sbjct: 53 QILMVNGEDVRNATQEAVAALLKCSLGTVTLEV 85
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 77.7 bits (192), Expect = 4e-18
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
+++ + + +TGFGF + G G + ++ ++ GAA+ G +R GD
Sbjct: 4 QDIFLWRKETGFGFRILGGNEPGEPI------------YIGHIVPLGAADTDGRLRSGDE 51
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLT 99
+++V+ V G +H+ VV+L++ +
Sbjct: 52 LISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 78.2 bits (193), Expect = 4e-18
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 13/104 (12%)
Query: 1 MYSTQQTGPR-EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
Y+T++ G R +Q+ K G GF++ + G I +V +L GAA
Sbjct: 22 SYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPI---------YVKNILPRGAAI 72
Query: 60 KAG-IRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTV 100
+ G ++ GDR++ VN V++ G + ++VV L++S +SL V
Sbjct: 73 QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 77.9 bits (192), Expect = 5e-18
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 3 STQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+ REV + K G G + S+ ++ +L GG AE++
Sbjct: 4 GSSGDNCREVHLEKRRGEGLGVALVE-----SGWGSLLPTAV-----IANLLHGGPAERS 53
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
G + GDR+ A+N ++ G ++ S+T+ V
Sbjct: 54 GALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 77.4 bits (191), Expect = 5e-18
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 19/108 (17%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
P +V + KS + + + ++ V + A + G I++GD
Sbjct: 3 PTKVTLVKSAKNEEYGL-----------RLASHIF-----VKEISQDSLAARDGNIQEGD 46
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
+L +N E + LI+ L + V E A L PD
Sbjct: 47 VVLKINGTVTENMSLTDAKTLIERSKGKLKMVV--QRDERATLLNVPD 92
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 77.9 bits (192), Expect = 7e-18
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ V+ K D G + G G ++ V+ VL A K G+ +GD+
Sbjct: 30 MKLVKFRKGD-SVGLRLAGGNDVG---------IF-----VAGVLEDSPAAKEGLEEGDQ 74
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
IL VNNV+ ++ V + +T+++ ++ R
Sbjct: 75 ILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYR 116
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 77.5 bits (191), Expect = 1e-17
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 9 PREVQIAKSDTGF-GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
P +V + K G ++ G G Y P ++ V A G + G
Sbjct: 20 PGKVTLQKDAQNLIGISIGG------------GAQYCPCLYIVQVFDNTPAALDGTVAAG 67
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
D I VN +++G T +V ++I+ +++
Sbjct: 68 DEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 101
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 76.3 bits (188), Expect = 1e-17
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 4 TQQTGPREVQIAKS-DTGFGFNVR-GQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
+ +E+++ D GF++ G G R + ++ V+ V G A K
Sbjct: 5 GHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL 59
Query: 62 GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
++ GD+I+ N + H Q V L+K+ + + L +
Sbjct: 60 -LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 76.2 bits (188), Expect = 1e-17
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 10 REVQIAKSDTG--FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
+V + K D+G G + + E G ++ + +L GG A + G +
Sbjct: 5 LQVALHKRDSGEQLGIKLVRRTDEPG--------VF-----ILDLLEGGLAAQDGRLSSN 51
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
DR+LA+N +++ T + ++I++ G+ ++LT+ E E
Sbjct: 52 DRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPEIE 94
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 77.9 bits (192), Expect = 2e-17
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 9 PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
PREV + K D G ++ I+ ++ V V A A G+R GD
Sbjct: 5 PREVILCKDQDGKIGLRLKS----------IDNGIF-----VQLVQANSPASLVGLRFGD 49
Query: 68 RILAVNNVNVEGATHKQVVELIK-SGGDVLSLTV 100
++L +N N G + + +++K + G+ +++T+
Sbjct: 50 QVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
Score = 69.9 bits (171), Expect = 1e-14
Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
+Q ++ + D F + G + +++++ +A + G+
Sbjct: 72 KQAFGEKITMTIRDRPFERTITMHKDSTGHV-----GFIFKNGKITSIVKDSSAARNGLL 126
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
I +N NV G Q+ +++ + G V+++T++
Sbjct: 127 TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 163
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 75.9 bits (187), Expect = 3e-17
Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
+ + V++ K G GF++ L + + +++A G AE++G
Sbjct: 10 ALWSPEVKIVELVKDCKGLGFSILDY---QDPLDPTRSVIV-----IRSLVADGVAERSG 61
Query: 63 -IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTV 100
+ GDR+++VN ++ + + VE++K+ ++ L +
Sbjct: 62 GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGI 101
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 75.2 bits (185), Expect = 6e-17
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 9 PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
V + K S GFG V G G+ + +S VL GG A+ +++ D
Sbjct: 15 QYTVTLQKDSKRGFGIAVSG-----GRDNPHFENGETSI-VISDVLPGGPAD-GLLQEND 67
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
R++ VN +E H V+ ++ G + ++ V + L P
Sbjct: 68 RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGP 114
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 74.8 bits (184), Expect = 1e-16
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 10 REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
+ I + T G GF+V S+ I V V G A++ +++ D
Sbjct: 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDI---------FVKDVQPGSVADRDQRLKEND 77
Query: 68 RILAVNNVNV-EGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDD 116
+ILA+N+ + + +H+Q + L++ L L V P
Sbjct: 78 QILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 72.7 bits (178), Expect = 3e-16
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 10 REVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
+ I KSDT +GF++ +G + LY V++V G A K G++ G
Sbjct: 8 HSIHIEKSDTAADTYGFSLSSVEEDGIR------RLY-----VNSVKETGLASKKGLKAG 56
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
D IL +NN + + + + L L V +
Sbjct: 57 DEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRT 90
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 72.4 bits (178), Expect = 3e-16
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
V + KS + +R +++ V + G A K G + +GD I
Sbjct: 3 GVLLMKSRANEEYGLRLG-----------SQIF-----VKEMTRTGLATKDGNLHEGDII 46
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L +N E + +LI+ L L V
Sbjct: 47 LKINGTVTENMSLTDARKLIEKSRGKLQLVV 77
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 72.5 bits (178), Expect = 4e-16
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
+EV + KS+ G + NG YA + + GG + I GD
Sbjct: 6 EKEVNVYKSEDSLGLTITD-----------NGVGYA---FIKRIKDGGVIDSVKTICVGD 51
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
I ++N N+ G H V + +K T+ + P+++
Sbjct: 52 HIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKS 92
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 72.4 bits (178), Expect = 6e-16
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 3 STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
Q ++ K + G GF+V G SE I V + G A +
Sbjct: 15 MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGI---------FVQEIQEGSVAHRD 65
Query: 62 G-IRKGDRILAVNNVNV-EGATHKQVVELIKSGGDVLSLTV 100
G +++ D+ILA+N + + TH+Q + +++ D + L +
Sbjct: 66 GRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 72.1 bits (177), Expect = 7e-16
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
V +TG G + G G R+ +Y + V+ GG K G ++ GD+
Sbjct: 16 FRVITVTKETGLGLKILG-----GINRNEGPLVY-----IHEVIPGGDCYKDGRLKPGDQ 65
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
++++N ++ G + ++ +I
Sbjct: 66 LVSINKESMIGVSFEEAKSIITRAKLRSESPW 97
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 71.2 bits (175), Expect = 8e-16
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 10 REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
R +Q K ++ G ++ +E V+ +L GG + G + GD
Sbjct: 14 RLIQFEKVTEEPMGICLKL--NEKQSC------------TVARILHGGMIHRQGSLHVGD 59
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
IL +N NV + Q+ + +K ++SL VI
Sbjct: 60 EILEINGTNVTNHSVDQLQKAMKETKGMISLKVI 93
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 71.2 bits (175), Expect = 1e-15
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 10 REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
V + K + G ++ +E G ++ ++ G E +++GD
Sbjct: 10 FNVDLMKKAGKELGLSLSP--NEIG--------CT-----IADLIQGQYPEIDSKLQRGD 54
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
I N +EG + L K +S+ V P A
Sbjct: 55 IITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAA 95
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 71.8 bits (176), Expect = 1e-15
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 3 STQQTGPREVQIAKSDT-GFGFNVRGQV-SEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
+ + E+ + S + G G +++G E G I + +++ GGAA K
Sbjct: 20 ESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGI---------FIKSIIHGGAAFK 70
Query: 61 AG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
G +R D+++AVN + G ++ + +E ++ + +
Sbjct: 71 DGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMI 114
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 70.5 bits (173), Expect = 2e-15
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 11 EVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
V + G ++ GQ +E G I ++ +++ GGA G I GD
Sbjct: 8 TVTLNMEKYNFLGISIVGQSNERGDG-GI---------YIGSIMKGGAVAADGRIEPGDM 57
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS-PEEAERLEPPDD 116
+L VN++N E ++ V +++ V++V+ E D
Sbjct: 58 LLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEVWID 106
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 70.5 bits (173), Expect = 2e-15
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 25/113 (22%)
Query: 11 EVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
V + K + G ++ +E G ++ ++ G E +++GD
Sbjct: 5 NVDLMKKAGKELGLSLSP--NEIG--------CT-----IADLIQGQYPEIDSKLQRGDI 49
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQ 121
I N +EG + L K +S+ V R +P SG
Sbjct: 50 ITKFNGDALEGLPFQVCYALFKGANGKVSMEVT--------RPKPGSGGSGSL 94
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 69.6 bits (171), Expect = 3e-15
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
+V + KS + + + ++ V + A + G I++GD +
Sbjct: 3 KVTLVKSRKNEEYGL-----------RLASHIF-----VKEISQDSLAARDGNIQEGDVV 46
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
L +N E + LI+ L + V
Sbjct: 47 LKINGTVTENMSLTDAKTLIERSKGKLKMVV 77
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 70.5 bits (173), Expect = 3e-15
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 32/106 (30%)
Query: 130 SLPISIPDYSYVNTED--ESFVVFNIYMAGRHLCSRR----------------------- 164
++ SIP+ + + ++V +NI++ G C R
Sbjct: 3 AMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAF 62
Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203
LT +++ RR LE Y++ V ++ SE FL A
Sbjct: 63 PPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA 108
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 70.2 bits (172), Expect = 4e-15
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 8 GPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
++ + + S G V G G+ + +G L A ++ V G A+ G +R
Sbjct: 36 RLKDGSVPRDSGAMLGLKVVG-----GK-MTESGRLCA---FITKVKKGSLADTVGHLRP 86
Query: 66 GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
GD +L N ++GAT ++V +I + ++
Sbjct: 87 GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 68.9 bits (169), Expect = 5e-15
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 16/94 (17%)
Query: 10 REVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
R VQ K+ D G ++ +E V+ ++ GG + G + GD
Sbjct: 3 RLVQFQKNTDEPMGITLKM--NELNHC------------IVARIMHGGMIHRQGTLHVGD 48
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
I +N ++V T +Q+ ++++ ++ ++
Sbjct: 49 EIREINGISVANQTVEQLQKMLREMRGSITFKIV 82
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 68.9 bits (169), Expect = 7e-15
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 3 STQQTGP--REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
S+ +G + V + +GF ++G G E PL VS + GG A
Sbjct: 2 SSGSSGGSFQYVPVQLQGGAPWGFTLKG-----GL------EHCEPLT-VSKIEDGGKAA 49
Query: 60 KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
+ +R GD ++ +N + G + ++ + LIK +L L V
Sbjct: 50 LSQKMRTGDELVNINGTPLYG-SRQEALILIKGSFRILKLIV 90
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 74.9 bits (183), Expect = 8e-15
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
E+ + + ++G GF++ G + ++ ++ ++ GGAA + G +R D
Sbjct: 60 YEEITLERGNSGLGFSIAGGTDN--PHIGDDPSIF-----ITKIIPGGAAAQDGRLRVND 112
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQ 122
IL VN V+V TH VE +K G ++ L V+ P + +E
Sbjct: 113 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGL 167
Score = 74.6 bits (182), Expect = 9e-15
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
PR + I + TG GFN+ G G +S +LAGG A+ +G +RKGD
Sbjct: 308 PRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 354
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
+IL+VN V++ A+H+Q +K+ G +++ E + D
Sbjct: 355 QILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLRE 406
Score = 48.4 bits (114), Expect = 2e-06
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GD 67
E+++ K G GF++ G V + I G+ +V+ ++ GGAA K G + GD
Sbjct: 155 VMEIKLIKGPKGLGFSIAGGVGN----QHIPGD---NSIYVTKIIEGGAAHKDGRLQIGD 207
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDD 116
+ILAVN+V +E H+ V +K+ DV+ L V S P D
Sbjct: 208 KILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPD 256
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 73.9 bits (180), Expect = 9e-15
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
+ +++ GG AE+ G+R G RI+ +N +V H+++V+ + + + + + P
Sbjct: 319 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTM---PAAM 375
Query: 109 ERL 111
RL
Sbjct: 376 FRL 378
Score = 61.1 bits (147), Expect = 1e-10
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 32 GGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIK 90
G + P ++ ++ GG A ++G + GD+I+++N ++ G +IK
Sbjct: 219 GVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 278
Query: 91 S--GGDVLSLTVISVSPEEAERLEPPDDHSGY 120
+ L ++S P ++ PD
Sbjct: 279 GLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQL 310
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 69.5 bits (170), Expect = 5e-14
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 49 VSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
++ ++ G E +++GD I N +EG + L K +S+ V P
Sbjct: 140 IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPTL 199
Query: 108 AERLEP 113
Sbjct: 200 RTEAPK 205
Score = 61.1 bits (148), Expect = 4e-11
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 20/128 (15%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
+++ G V G G+ + ++ V G ++ D I
Sbjct: 21 LIELKVEKKPMGVIVCG-----GKNNHVTTGCV-----ITHVYPEGQVAADKRLKIFDHI 70
Query: 70 LAVNNVNVEGA--THKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
+N + T +V +L + + + R +PP+ +
Sbjct: 71 CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVF-------RADPPELEKFNVDLMKKA 123
Query: 128 KRSLPISI 135
+ L +S+
Sbjct: 124 GKELGLSL 131
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 66.4 bits (161), Expect = 3e-12
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 26/140 (18%)
Query: 9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
+ V+ K D G + G G I V+ VL A K G+ +GD+
Sbjct: 10 MKLVKFRKGD-SVGLRLAG-----GNDVGI---------FVAGVLEDSPAAKEGLEEGDQ 54
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEK 128
IL VNNV+ ++ V + +T++ Y++I ++
Sbjct: 55 ILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-----------AQKKKDVYRRIVESDV 103
Query: 129 RSLPISIPDYSYVNTEDESF 148
+ Y
Sbjct: 104 GDSFYIRTHFEYEKESPYGL 123
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 61.8 bits (150), Expect = 4e-12
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 10 REVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
EV + + S G V + + + +Y +S + A K G IR+G
Sbjct: 21 EEVDLYRMNSQDKLGLTVCYRTDDED-----DIGIY-----ISEIDPNSIAAKDGRIREG 70
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
DRI+ +N + V+ + + + SL + + E D
Sbjct: 71 DRIIQINGIEVQNREEAVALLTSEENKNF-SLLIARPELQLDEGWMDDD 118
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 63.6 bits (154), Expect = 9e-12
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
R V + K+D G G +++G + +S + G AA++
Sbjct: 72 EALLLQRRRVTVRKADAGGLGISIKGGRENKMPIL------------ISKIFKGLAADQT 119
Query: 62 G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHS 118
+ GD IL+VN ++ ATH + V+ +K G + + E + + +
Sbjct: 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV-LEVKYMKEVSPYFKNSAGGT 176
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 58.6 bits (142), Expect = 3e-11
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 10 REVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
R V I K+ G R + GEL ++ +L GG + G + GD
Sbjct: 8 RMVGIRKTAGEHLGVTFRVE----------GGELV-----IARILHGGMVAQQGLLHVGD 52
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
I VN V G+ + + EL+++ + L ++S P
Sbjct: 53 IIKEVNGQPV-GSDPRALQELLRNASGSVILKILS-GPSSG 91
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 62.2 bits (150), Expect = 9e-11
Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 26/139 (18%)
Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
+ V+ K D G + G G I V+ VL A K G+ +GD+I
Sbjct: 3 KLVKFRKGD-SVGLRLAG-----GNDVGI---------FVAGVLEDSPAAKEGLEEGDQI 47
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKR 129
L VNNV+ ++ V + +T++ Y++I ++
Sbjct: 48 LRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-----------AQKKKDVYRRIVESDVG 96
Query: 130 SLPISIPDYSYVNTEDESF 148
+ Y
Sbjct: 97 DSFYIRTHFEYEKESPYGL 115
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 3e-10
Identities = 63/438 (14%), Positives = 120/438 (27%), Gaps = 164/438 (37%)
Query: 32 GGQ---------LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH 82
GGQ LR + + Y L
Sbjct: 161 GGQGNTDDYFEELRDL-YQTYHVL------------------------------------ 183
Query: 83 KQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVN 142
V +LIK + LS + + +AE++ G +++ E P + PD Y+
Sbjct: 184 --VGDLIKFSAETLS--ELIRTTLDAEKVFT----QGLNILEWLEN---PSNTPDKDYLL 232
Query: 143 TEDESFVVFNIYMAGRHLCSRR---LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEF 199
+ S + + ++ + + T +L S +G + + + IAE++ + F
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 200 LTDALD------------------------------ENG--------------------- 208
EN
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 209 ---TNISSPVD--IKILL---PDREVIT----------VSVRKSATADEVYASAVP---- 246
TN P ++I L V++ +++RK+ + S +P
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 247 KL-----YLQSPSSAAYF--YLFEIVEYSFERKLEAKEF---PHHLYIQNYSTASATCLC 296
KL +L P ++ + L + + L + I Y T + L
Sbjct: 413 KLKFSNRFL--PVASPFHSHLLVPASD-LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 297 IRKWLFSAPLERSLVANDDRVATF-MFWMAIDA------VD--RGQIRAEDRLYELKALQ 347
+ S + +V D + + W +D G L +
Sbjct: 470 V----LSGSISERIV---DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL--THRNK 520
Query: 348 DASRKHEITTGSCNPNRA 365
D + I G+ + N
Sbjct: 521 DGTGVRVIVAGTLDINPD 538
Score = 42.3 bits (99), Expect = 2e-04
Identities = 52/345 (15%), Positives = 107/345 (31%), Gaps = 102/345 (29%)
Query: 41 ELYAP-LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLT 99
EL L +VS+++ E + + + D++L + G D+ +L
Sbjct: 59 ELVGKFLGYVSSLV-----EPSKVGQFDQVLN--------LCLTEFENCYLEGNDIHAL- 104
Query: 100 VISVSPEEAERLEPPDDHSGYQQID----YTEKRSL---PISIPDYS--YVNTEDES--- 147
A +L +D + + + Y R + P S + + +
Sbjct: 105 --------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 148 FVVF------NIYMAGRHLCSRRLTEQQLDSRRRGL-EIYLEKVCAVRVIAESELMQEFL 200
+F + Y E L R L + Y V + + +E + E +
Sbjct: 157 VAIFGGQGNTDDY----------FEE--L----RDLYQTYHVLVGDL-IKFSAETLSELI 199
Query: 201 TDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVY-ASA---VPKLYL-QSPSS 255
LD + ++I L + T D+ Y S P + + Q
Sbjct: 200 RTTLDAE-KVFTQGLNILEWLENPS---------NTPDKDYLLSIPISCPLIGVIQL--- 246
Query: 256 AAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPL------ERS 309
A Y +++ ++ P L +Y + + L +A S
Sbjct: 247 AHYVVTAKLLGFT----------PGELR--SYLKGATGHS---QGLVTAVAIAETDSWES 291
Query: 310 LVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHE 354
+ + T +F++ + R + L+D+ +E
Sbjct: 292 FFVSVRKAITVLFFIGV----RCYEAYPNTSLPPSILEDSLENNE 332
Score = 42.0 bits (98), Expect = 3e-04
Identities = 42/297 (14%), Positives = 80/297 (26%), Gaps = 127/297 (42%)
Query: 5 QQTGPR------EVQIAKSDTGFG-----FNVRG----QVSEGGQLRSINGELYAPLQHV 49
+ P ++ + + G ++ QV + + N L + V
Sbjct: 311 YEAYPNTSLPPSILEDSL-ENNEGVPSPMLSISNLTQEQVQD--YVNKTNSHL-PAGKQV 366
Query: 50 SAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
L VN GA + VV G SL ++++
Sbjct: 367 EISL---------------------VN--GAKN-LVV-----SGPPQSLYGLNLT---LR 394
Query: 110 RLEPPDDHSGYQQ--IDYTEK------RSLPISIP---DY---------SYVNTEDESFV 149
+ + P SG Q I ++E+ R LP++ P + + SF
Sbjct: 395 KAKAP---SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 150 -------VFNIYMAGRHLCS------RRLTEQQLDSRRRGLEIYLEKVCAVR---VIAES 193
V++ + G L R+ + + + E + ++
Sbjct: 452 AKDIQIPVYDTF-DGSDLRVLSGSISERIVDCIIRLP-----VKWETTTQFKATHIL--- 502
Query: 194 ELMQEF----------LTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEV 240
+F LT + GT + VI D+
Sbjct: 503 ----DFGPGGASGLGVLTHRNKD-GTGV-------------RVIVAGTLDINPDDDY 541
Score = 33.5 bits (76), Expect = 0.15
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 47/105 (44%)
Query: 5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
++TG V+I +NV Q Q Y V AG + +
Sbjct: 1835 KRTG-WLVEIV------NYNVENQ-----Q--------Y--------VAAG---DLRALD 1863
Query: 65 KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
+L N + + +++ D++ L S+S EE E
Sbjct: 1864 TVTNVL--NFIKL-----QKI--------DIIELQK-SLSLEEVE 1892
Score = 28.5 bits (63), Expect = 4.9
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 40/106 (37%)
Query: 32 GGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVN--NVNVEGATHKQVVELI 89
G LR ++G + + V ++ L V ATH +++
Sbjct: 465 GSDLRVLSGSI--SERIVDCII---------------RLPVKWETTTQFKATH--ILDF- 504
Query: 90 KSGGD--VLSLT----------VISVSPEEAERLEP-PDDHSGYQQ 122
GG + LT VI L+ PDD G++Q
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGT-----LDINPDDDYGFKQ 545
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 55.3 bits (132), Expect = 3e-09
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 20 GFGFNVR-GQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVE 78
GF++ G G R + ++ V+ V G A K ++ GD+I+ N +
Sbjct: 3 ELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL-LQPGDKIIQANGYSFI 56
Query: 79 GATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIP 136
H Q V L+K+ + + L ++ A++ + + +
Sbjct: 57 NIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVA 114
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607,
structural genomics,protein structure initiative PSI;
NMR {Homo sapiens}
Length = 128
Score = 53.3 bits (128), Expect = 4e-09
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 36/112 (32%)
Query: 124 DYTEKRSLPISIPDYSYVNTEDE-----SFVVFNIYMA---GRHLCSRR----------- 164
+ L + IP S +VF + + RH RR
Sbjct: 3 HHHHHLELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRI 62
Query: 165 ----------------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200
+ L+ RR+GLE Y++ + + EL+ EFL
Sbjct: 63 KKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELL-EFL 113
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 52.7 bits (127), Expect = 5e-09
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
+ V+ G A +AG+R GD ILA+ V+ A V E +++ L++ +
Sbjct: 39 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE--DVYEAVRT-QSQLAVQIRRGRETLT 95
Query: 101 ISVSPEEAE 109
+ V+PE E
Sbjct: 96 LYVTPEVTE 104
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 54.6 bits (132), Expect = 2e-08
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
+ V+ G A +AG+R GD ILA+ V+ A + V E +++ L++ +
Sbjct: 260 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRETLT 316
Query: 101 ISVSPEEAE 109
+ V+PE E
Sbjct: 317 LYVTPEVTE 325
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 53.4 bits (129), Expect = 4e-08
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
+ V+ AE G+++ D I+++N +V A V ++IK L++ V
Sbjct: 258 IIEVIPDTPAEAGGLKENDVIISINGQSVVSAN--DVSDVIKR-ESTLNMVVRRGNEDIM 314
Query: 101 ISVSPEEAERLEPPDDH 117
I+V PEE + LE H
Sbjct: 315 ITVIPEEIDPLEHHHHH 331
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 50.6 bits (121), Expect = 5e-08
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 34/109 (31%)
Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMA---GRHLCSRR-------------------- 164
K + ISIP Y ++ F + + RR
Sbjct: 3 KDPIKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAA 62
Query: 165 -----------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202
E+ + RR LE YL +V + + + +
Sbjct: 63 LEFPPKKLFGNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVG 111
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase;
1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Length = 154
Score = 50.7 bits (121), Expect = 5e-08
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 35/132 (26%)
Query: 128 KRSLP-ISIPDYSYVNTEDESFVVFNIYMA------------------------------ 156
K S P +SIP + + F V+ + ++
Sbjct: 4 KESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMA 63
Query: 157 ----GRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNIS 212
+ + + RR GL +++ + + ++ FL + ++ S
Sbjct: 64 LKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPS 123
Query: 213 SPVDIKILLPDR 224
D +
Sbjct: 124 EDEDERSTSKPH 135
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 48.4 bits (116), Expect = 1e-07
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
V V +++ GI+ GD I+ VN + + ++ E + + L L V
Sbjct: 39 VQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLT-ESPLLLEVRRGNDDLL 95
Query: 101 ISVSPEE 107
S++PE
Sbjct: 96 FSIAPEV 102
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 46.7 bits (111), Expect = 3e-07
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTV------- 100
+ V AA AG++ GDRI+ V+ + V L++ + G L+L +
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGSPL 65
Query: 101 -ISVSPEEAE 109
+++ PE
Sbjct: 66 SLTLIPESXP 75
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 50.4 bits (121), Expect = 4e-07
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
+ V+AGGAA AG+ KG + V++ + A K+ G ++LT
Sbjct: 246 IVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQ 298
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 50.0 bits (120), Expect = 7e-07
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
+ V+ G A +AG++K D I+ VN V ++ +++ + +++L ++
Sbjct: 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIV 417
Score = 44.6 bits (106), Expect = 3e-05
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
VS VL G + KAG++ GD I ++N + + + + G V L ++
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKV-KLGLL 319
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 49.6 bits (119), Expect = 8e-07
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
V+ V G A + G++KGD I+ N V+ ++ +++ S VL+L +
Sbjct: 387 VNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNI 436
Score = 44.6 bits (106), Expect = 3e-05
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
VS VL +A KAGI+ GD I ++N + + V + G + +L ++
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKL-TLGLL 342
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 49.2 bits (118), Expect = 1e-06
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
V A +AGIR GD I++ N V K + + + L + V+
Sbjct: 390 VVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVL 440
Score = 44.6 bits (106), Expect = 3e-05
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
VS V AE AG++ GD I +N+ + AT K + L++ G V + V
Sbjct: 286 VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTV-KIIVE 338
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 45.6 bits (107), Expect = 2e-06
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 13/109 (11%)
Query: 10 REVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK--AGIRKG 66
+ + + GF+V + + YA V V + I G
Sbjct: 17 TLISMPATTECRRGFSVTVESA---------SSNYATTVQVKEVNRMHISPNNRNAIHPG 67
Query: 67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERLEPP 114
DRIL +N V ++V + IK L L + P+ ++ P
Sbjct: 68 DRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSGPS 116
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 35/257 (13%), Positives = 72/257 (28%), Gaps = 95/257 (36%)
Query: 122 QIDYTEKRSLPISIP----DYSYVNTEDESFVVF------NIYMAGRHLCSRRLTEQQLD 171
+ Y K L + ++ + +D + +I M+
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-------AVSGT- 64
Query: 172 SRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSV 231
R L K + E++Q+F+ + L N + SP IK ++T
Sbjct: 65 --LRLFWTLLSK--------QEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMT--- 109
Query: 232 RKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS 291
+Y +LY + +Y+ R Y++
Sbjct: 110 -------RMYIEQRDRLYNDNQV---------FAKYNVSRL--------QPYLK------ 139
Query: 292 ATCLCIRKWLFSAPLERSL----------------VANDDRVATFM----FWMAIDAVDR 331
+R+ L +++ V +V M FW+ +
Sbjct: 140 -----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----- 189
Query: 332 GQIRAEDRLYELKALQD 348
+ + + L+ LQ
Sbjct: 190 KNCNSPETV--LEMLQK 204
Score = 42.5 bits (99), Expect = 2e-04
Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 68/262 (25%)
Query: 99 TVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGR 158
T+I S LEP + + ++ S I S + + V + +
Sbjct: 357 TIIESS---LNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVV-VN-- 409
Query: 159 HLCSRRLTEQQLDSRRRGL-EIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDI 217
L L E+Q + IYLE + E L + + + NI D
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIV------DHYNIPKTFDS 461
Query: 218 KILLPDREVITVSVRKSATADEVYASAVPKLY-LQSPSSAAYFYLFEIV--EYSFERKLE 274
L+P D+ + S + + L++ LF +V ++ F LE
Sbjct: 462 DDLIPPYL------------DQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRF---LE 504
Query: 275 AKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQI 334
K I++ STA W S + + + F+ + I
Sbjct: 505 QK-------IRHDSTA---------WNASGSIL-------NTLQQLKFY-------KPYI 534
Query: 335 RAEDRLYE--LKALQDASRKHE 354
D YE + A+ D K E
Sbjct: 535 CDNDPKYERLVNAILDFLPKIE 556
Score = 40.6 bits (94), Expect = 8e-04
Identities = 44/308 (14%), Positives = 88/308 (28%), Gaps = 104/308 (33%)
Query: 94 DVLSLTVISVSPEEAERL--EPPDDH--------------SGYQ-------QIDY----- 125
DV + +S EE + + Q +I+Y
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 126 ---TEKRSLPISIPDYSYVNTEDESF---VVFNIYMAGRHLCSRRLTE--QQLDSRRRGL 177
TE+R P S+ Y+ D + VF Y R +L + +L R
Sbjct: 97 PIKTEQRQ-P-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAK 151
Query: 178 EIYLE------KVC-AVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVS 230
+ ++ K A+ V ++ + D ++ ++
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKM-----------------------DFKIFWLN 188
Query: 231 VRKSATADEV-------YASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLY 283
++ + + V P +S S+ ++ R L++K + + L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 284 I----QNYSTASA---TCLCIRKWLFSAPLERSLV-ANDDRVATFMFWMAIDAVDRGQIR 335
+ QN +A +C + L+ +V F + A I
Sbjct: 249 VLLNVQNAKAWNAFNLSC-------------KILLTTRFKQVTDF-----LSAATTTHIS 290
Query: 336 AEDRLYEL 343
+ L
Sbjct: 291 LDHHSMTL 298
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 44.6 bits (105), Expect = 3e-06
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
V + A A +A I G + AV+ + ++ + K G + ++TV
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITV 57
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 46.8 bits (112), Expect = 5e-06
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 25 VRGQ-----VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
+ G+ ++GG + + G + V+ V G A AGI+ D I++V+N
Sbjct: 225 IGGREIAPLHAQGGGIDQLQGIV------VNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278
Query: 80 ATH-KQVVELIKSGGDVLSLTVI 101
A V I+ G + + V+
Sbjct: 279 ALETMDQVAEIRPGSVI-PVVVM 300
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 43.4 bits (103), Expect = 6e-06
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVI 101
V +VL A + GDRI A++ + T +Q+V + K GD + +T I
Sbjct: 9 VMSVLPNMPA-AGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFI 60
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 42.6 bits (101), Expect = 9e-06
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVI 101
S+V+ A K I GD+I++ + N + + +++++ I S GD ++L +
Sbjct: 5 ASSVVENMPA-KGKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIE 56
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 45.9 bits (109), Expect = 1e-05
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 16/124 (12%)
Query: 17 SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVN 76
GF + N Y L +S V+ G AE+AG+++G I+ +N
Sbjct: 72 PSYGFDY--------TLYKVLDNDTAYNAL--ISYVVPGSPAEEAGLQRGHWIMMMNGDY 121
Query: 77 VEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIP 136
+ ++++ G L + E E + RSL + P
Sbjct: 122 ITKKVESELLQ-----GSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPASRSL-VDKP 175
Query: 137 DYSY 140
+ +
Sbjct: 176 VHRF 179
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 42.5 bits (100), Expect = 2e-05
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTV------ 100
+ +V+ G A K + G I ++N + +K+ G+V+++T
Sbjct: 29 IDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGTFH 85
Query: 101 --ISVSPEEAER 110
+P + R
Sbjct: 86 LKTGRNPNNSSR 97
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 44.9 bits (107), Expect = 2e-05
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVI 101
V GG AEKAG R GD I+ V+ V+G + V +L+ ++ V + +
Sbjct: 103 VLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQV-EVVLH 156
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 45.0 bits (105), Expect = 3e-05
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
V V +A AG+ GD+I+A++++ + K+++E GD +++
Sbjct: 499 DVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYI-PGDTVTIHAF 551
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 43.8 bits (104), Expect = 4e-05
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
VS VL G + KAG++ GD I ++N + + + + G V L ++
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKV-KLGLL 319
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 40.8 bits (96), Expect = 5e-05
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVI 101
V +V A + GD I ++ + + + ++ I K GD + +
Sbjct: 11 VMSVKDDVPAADV-LHAGDLITEIDGNAFKSSQ--EFIDYIHSKKVGDTVKINYK 62
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 41.4 bits (98), Expect = 6e-05
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
V +V + A + K D I V++ + +T Q S GD + +T
Sbjct: 61 VRSVQSNMPA-NGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYY 112
>3p0c_A Nischarin; structural genomics, structural genomics consortium,
SGC, PX signaling protein; 2.27A {Homo sapiens}
Length = 130
Score = 40.2 bits (94), Expect = 2e-04
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 163 RRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT-DALDENG 208
+ + ++ R + LE+YL+K+ A ++ FL + NG
Sbjct: 84 GKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFYEING 130
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 39.1 bits (91), Expect = 3e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVI 101
VS E G++ GD +A+N +++ + L +S +SLTV
Sbjct: 41 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVE 93
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 40.8 bits (95), Expect = 3e-04
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 1 MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
+YS++ RE + S+ G + G N ++ HV V + A
Sbjct: 72 IYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVW----HVLEVESNSPAAL 127
Query: 61 AGIR-KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
AG+R D I+ + V E ++E L L V +
Sbjct: 128 AGLRPHSDYIIGADTVMNESEDLFSLIE--THEAKPLKLYVYN 168
Score = 40.1 bits (93), Expect = 4e-04
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 48 HVSAVLAGGAAEKAGIR-KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
HV V +AG+ D I+++N + L + + + + S
Sbjct: 19 HVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTL 78
Query: 107 EAERLE--PPDDHSGYQQI 123
E P + G +
Sbjct: 79 ELRETSVTPSNLWGGQGLL 97
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 37.1 bits (86), Expect = 8e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVI 101
VS E G++ GD +A+N +++ + L +S +SLTV
Sbjct: 23 VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVE 75
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur
genomics consortium, protein transport, transport; 1.70A
{Homo sapiens}
Length = 138
Score = 37.4 bits (87), Expect = 0.002
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202
R + +++RR+ L +L ++ + +E + FLT
Sbjct: 85 RFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 123
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 36.8 bits (85), Expect = 0.002
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 154 YMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIA---ESELMQEFL 200
+ R R + +D RR GLE +L ++ R + ++++ Q+FL
Sbjct: 62 GVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFL 111
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 38.4 bits (90), Expect = 0.003
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 49 VSAVLAGGAAEKAGIR-----------KGDRILAVNNVNVEGATH-KQVVELIKSGGDVL 96
V G A KAG++ GD I +VN V + ++++ K GD +
Sbjct: 255 VLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKV-GDEV 313
Query: 97 SLTVI 101
++ V+
Sbjct: 314 TVEVL 318
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices,
proline rich loop, protein transport; NMR {Homo sapiens}
Length = 128
Score = 36.4 bits (84), Expect = 0.004
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202
+ + L+ RR LE YL+++ + + ++EFL
Sbjct: 88 SSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEK 126
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide;
phosphoprotein, nucleotide-binding, PIK3C2G, membrane,
PX-domain, transferase, ATP-binding; 1.25A {Homo
sapiens}
Length = 127
Score = 35.6 bits (82), Expect = 0.005
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 157 GRHLCSRRLTEQQLDSRRRGLEIYLEKVC-AVRVIAESELMQEFL 200
++ + R R L Y+E++ + S+ + F
Sbjct: 83 HWWHLPFTNSDHR---RFRDLNHYMEQILNVSHEVTNSDCVLSFF 124
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 146
Score = 35.6 bits (82), Expect = 0.007
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202
++ RR+GLE ++ K+ + + FL +
Sbjct: 97 IEERRQGLEQFINKIAGHPLAQNERCLHMFLQE 129
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase
regulator; NMR {Homo sapiens}
Length = 149
Score = 35.5 bits (81), Expect = 0.008
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 154 YMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRV-IAESELMQEFLTDALDENGTNIS 212
+ L R + +R + LE Y ++ A +A S + F +
Sbjct: 77 KLLDAPLLGRVGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFA--PQPLDLEPA 134
Query: 213 SPVDIKILLPDRE 225
P +++LP E
Sbjct: 135 LPPGSRVILPTPE 147
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo
sapiens} PDB: 2rea_A 2red_A
Length = 121
Score = 34.5 bits (79), Expect = 0.012
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 152 NIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAV-RVIAESELMQEFLT 201
R + R + R+ L YL+ + +AE +L+ F
Sbjct: 63 LPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFH 113
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo
sapiens} SCOP: d.189.1.1
Length = 143
Score = 34.6 bits (79), Expect = 0.016
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRV-IAESELMQEFLT 201
+ ++ + R L Y++ + ++ V + E ++ F
Sbjct: 95 GVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFY 133
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing
alpha polypeptide; PI3K, PX domain, transferase; 2.6A
{Homo sapiens}
Length = 140
Score = 33.8 bits (77), Expect = 0.032
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 154 YMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAV-RVIAESELMQEFLT 201
R + R + R+ L YL+ + +AE +L+ F
Sbjct: 80 GFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFH 128
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein;
HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP:
d.189.1.1 PDB: 1ocu_A*
Length = 162
Score = 33.4 bits (76), Expect = 0.049
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 157 GRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIA-ESELMQEFLTD 202
G+ L S R + + ++ RR+GL +++ V ++ S+++ F+
Sbjct: 111 GKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEA 157
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 34.3 bits (78), Expect = 0.053
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201
R E+ + R L+ ++ ++C VI+ESE+ Q+FL
Sbjct: 89 RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLN 126
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.074
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
Query: 271 RKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLE 307
+KL+A ++ Y+ SA L I+ A +E
Sbjct: 23 KKLQAS-------LKLYADDSAPALAIK-----ATME 47
Score = 30.3 bits (67), Expect = 0.59
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 22/50 (44%)
Query: 31 EGGQLRSING--ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVE 78
E L+ + +LYA +A A LA+ +E
Sbjct: 18 EKQALKKLQASLKLYAD----------DSA-PA--------LAI-KATME 47
Score = 27.2 bits (59), Expect = 6.3
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 230 SVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE 266
+++K +++ KLY + SA + +E
Sbjct: 21 ALKK-------LQASL-KLY--ADDSAPALAIKATME 47
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A
{Homo sapiens}
Length = 386
Score = 33.6 bits (76), Expect = 0.090
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 164 RLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201
R E ++ R+R L ++++ + + V+++ E Q FL+
Sbjct: 109 RFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLS 146
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P,
3-kinase, PX domain, SH3 domain, cytoskeleton, cell
polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Length = 156
Score = 32.4 bits (73), Expect = 0.12
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 165 LTEQQLDSRRRGLEIYLEKVCAV-RVIAESELMQEFLT 201
+T R+ L IY+ + + I+ SE++
Sbjct: 96 VTNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFV 133
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain,
NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo
sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Length = 141
Score = 31.6 bits (71), Expect = 0.17
Identities = 5/37 (13%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 166 TEQQLDSRRRGLEIYLEKVCAVRV-IAESELMQEFLT 201
++ ++R+ L Y + ++ I+ + +F
Sbjct: 83 GQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFK 119
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol,
PI(4,5)P2, cell adhesion, protein transport; 1.47A
{Rattus norvegicus} PDB: 3hpb_A
Length = 161
Score = 31.7 bits (71), Expect = 0.21
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 109 ERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQ 168
+ L D++G K + + S + L + L
Sbjct: 58 DTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYL--A 115
Query: 169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDEN 207
E++L+++ + V+++ FL D +
Sbjct: 116 VFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLS 154
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Length = 100
Score = 30.7 bits (69), Expect = 0.23
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFE-IVEYSFE 270
P +K+ D +V V ATA V V + + S + L E + E
Sbjct: 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWG---LVECHPHLALE 63
Query: 271 RKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAP 305
R LE E + + + RK S P
Sbjct: 64 RGLEDHESVVEV-QAAWPVGGDSRFVFRKNFASGP 97
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 31.0 bits (70), Expect = 0.54
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLF 262
+KI + D V T+ V S T ++ + ++ + + + L
Sbjct: 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH---DEYSLV 130
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 30.6 bits (69), Expect = 0.58
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 63 IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQ 122
+ RIL +++V G + E+I + + ++I++ +E + + S Q
Sbjct: 122 ALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEGLSATQT 181
Query: 123 I 123
+
Sbjct: 182 V 182
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 30.6 bits (68), Expect = 0.90
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSF 269
+ + ++ LLP+ ++T+ + AT + +L+ ++ + L + Y F
Sbjct: 39 MPPRILVECLLPNGMIVTLECLREATLITIKH----ELFKEARKYPLHQLLQDESSYIF 93
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 30.2 bits (67), Expect = 1.5
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 206 ENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV 265
++ + + LLP I + V + AT + L+ Q + + L +I
Sbjct: 43 DSQIASDGAISVDFLLPTGIYIQLEVPREATISYIKQ----MLWKQVHNYPMFNLLMDID 98
Query: 266 EYSF 269
Y F
Sbjct: 99 SYMF 102
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 29.4 bits (65), Expect = 1.7
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFE-IVEYSFERKLEA 275
+K+ D V + TA ++ V K + +S L E ER LE
Sbjct: 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWT---LVEHHPHLGLERCLED 67
Query: 276 KEF 278
E
Sbjct: 68 HEL 70
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.4 bits (65), Expect = 2.5
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 49 VSAVLAGGAAEKAGIR-KGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVISVSP 105
S + GI G I ++ V + + ++ K+G
Sbjct: 760 YSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGKGGD 817
Query: 106 EEAERLEPPDD 116
+ ++ DD
Sbjct: 818 KRDLMIDILDD 828
>3ddc_B RAS association domain-containing family protein; oncogene,
tumorsuppressor, ubiquitin fold, RAS effector, RAP
rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A
{Mus musculus}
Length = 163
Score = 28.2 bits (62), Expect = 2.8
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 200 LTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYF 259
+ DA+ E ++ LP + + + + T EV + K + F
Sbjct: 62 IYDAIKEVNPAATTDKRTSFYLPLDAIKQMHISSTTTVSEVIQGLLDKF--MVVDNPQKF 119
Query: 260 YLFEIVEYS---FERKLEAKEFPHHLYIQ 285
LF+ + +KL ++P LY++
Sbjct: 120 ALFKRIHKDGQVLFQKLSIADYP--LYLR 146
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 28.8 bits (65), Expect = 3.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 29 VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRIL 70
V+ G+ N + L S A + G+++GDR+
Sbjct: 65 VNGKGKELMWN---FRELSENSQQAANVLSGACGLQRGDRVA 103
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP;
3.35A {Deinococcus radiodurans} PDB: 2aar_7
Length = 112
Score = 27.2 bits (61), Expect = 3.5
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 186 AVRVIAESELMQEFLTDALDENGTNISSP-VDIKILLPDREVI---TVSVR 232
V L++ + L E G N+ VD + + +
Sbjct: 61 YVESQVRDRLLETHYSQGLRELGLNLVDATVDPQDVQSGQAFEFTVKGETY 111
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 28.4 bits (63), Expect = 4.2
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 214 PVDIKILLPDREVITVSV--RKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFER 271
++I D +V + + T ++ + L S + YF ++ E +
Sbjct: 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRL-SQETQQYFTIWICSE-NLSL 58
Query: 272 KLEAKEFPHHLYIQ 285
+L+ P
Sbjct: 59 QLKPYHKPLQHVRD 72
>3m7a_A Uncharacterized protein; structural genomics, unknown function,
joint center for structural genomics, JCSG; HET: MSE;
1.22A {Novosphingobium aromaticivorans}
Length = 140
Score = 27.2 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 49 VSAVL--AGGAAEKAGIRKGDRI 69
AVL GG A + GI+ GD++
Sbjct: 116 TLAVLEINGGLAARLGIKPGDKV 138
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Length = 136
Score = 26.7 bits (59), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 49 VSAVL--AGGAAEKAGIRKGDRI 69
V+ VL G ++ G+ GDR+
Sbjct: 102 VAYVLELNAGTVKRLGVSPGDRL 124
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 27.7 bits (62), Expect = 7.7
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 88 LIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
K G+ +++ + E + + D IDY+E
Sbjct: 372 YSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE 411
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 27.5 bits (60), Expect = 9.4
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 134 SIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLD 171
PDY Y+ T D + V N+ L +
Sbjct: 43 IDPDYYYMWTRDSALVFKNLIDRFTETYDAGLQRRIEQ 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.373
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,658,075
Number of extensions: 349793
Number of successful extensions: 1203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 253
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)