BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2829
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AT7|B Chain B, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
           Complex
 pdb|4AT8|B Chain B, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
           Complex With Atp
 pdb|4AT8|D Chain D, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
           Complex With Atp
 pdb|4AT9|B Chain B, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
           Complex With Utp
 pdb|4ATB|B Chain B, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
           Complex With Ctp
 pdb|4ATB|D Chain D, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain
           Complex With Ctp
          Length = 383

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 66/125 (52%), Gaps = 17/125 (13%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   +SCV++IR+LR L      W  +  W LELL EK I +A  P+  G+ALRRV E
Sbjct: 220 ARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLE 279

Query: 78  AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            +A            DPCEKE  DA+ ++  Q RED+T              +HK+LGM+
Sbjct: 280 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD 339

Query: 124 QLKLK 128
            L  K
Sbjct: 340 PLPSK 344


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,110,738
Number of Sequences: 62578
Number of extensions: 136076
Number of successful extensions: 191
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 1
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)