BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2829
(176 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q562A2|ZFR_RAT Zinc finger RNA-binding protein OS=Rattus norvegicus GN=Zfr PE=1 SV=2
Length = 1073
Score = 137 bits (345), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV+IIR+LR L Q W+ WA+ELLVEK I+SA P SPGDALRRVFE
Sbjct: 913 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 972
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG++L+ PGLLDPCEK+P D LA M Q RED+T IHK+LGM+
Sbjct: 973 CISSGIILKGNPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1032
Query: 124 QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
L ++ + F + NRKRRRD+ + + KKDKK+
Sbjct: 1033 PLPQMNQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1069
>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1
Length = 1074
Score = 136 bits (342), Expect = 9e-32, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV+IIR+LR L Q W+ WA+ELLVEK I+SA P SPGDALRRVFE
Sbjct: 914 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG++L+ PGLLDPCEK+P D LA M Q RED+T IHK+LGM+
Sbjct: 974 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033
Query: 124 QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
L ++ + F + NRKRRRD+ + + KKDKK+
Sbjct: 1034 PLPQMSQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1070
>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2
Length = 1074
Score = 135 bits (341), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV+IIR+LR L Q W+ WA+ELLVEK I+SA P SPGDALRRVFE
Sbjct: 914 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG++L+ PGLLDPCEK+P D LA M Q RED+T IHK+LGM+
Sbjct: 974 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033
Query: 124 QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
L ++ + F + NRKRRRD+ + + KKDKK+
Sbjct: 1034 PLPQMSQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1070
>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2
Length = 1074
Score = 135 bits (340), Expect = 1e-31, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV+IIR+LR L Q W+ WA+ELLVEK I+SA P SPGDALRRVFE
Sbjct: 914 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG++L+ PGLLDPCEK+P D LA M Q RED+T IHK+LGM+
Sbjct: 974 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033
Query: 124 QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
L ++ + F + NRKRRRD+ + + KKDKK+
Sbjct: 1034 PLPQMNQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1070
>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2
Length = 1074
Score = 134 bits (338), Expect = 2e-31, Method: Composition-based stats.
Identities = 80/161 (49%), Positives = 99/161 (61%), Gaps = 19/161 (11%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV++IR+LR L Q W+ WA+ELLVEK I+SA P+SPGDALRRVFE
Sbjct: 913 ARANGLQSCVIVIRILRDLCQRVPTWSAFPSWAMELLVEKAISSASGPMSPGDALRRVFE 972
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG+LL PGL+DPCEK P D LA M Q RED+T IHK+LGM+
Sbjct: 973 CISSGILLSGAPGLIDPCEKNPTDTLAFMEEQQREDITSSAQFALRLLAFRQIHKVLGMD 1032
Query: 124 QLKLKRGFGGSRSANRKRRRDTSSG-EKEDGGVKKDKKEEE 163
L R+ RKRRRD S G + + KKDKK+ E
Sbjct: 1033 PLPQMNSRFNVRNT-RKRRRDNSDGADGFEAEGKKDKKDYE 1072
>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1
Length = 1054
Score = 123 bits (308), Expect = 6e-28, Method: Composition-based stats.
Identities = 80/160 (50%), Positives = 101/160 (63%), Gaps = 18/160 (11%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV++IR+LR L Q W+ WALELLVEK I+S+ P SPGDALRRVFE
Sbjct: 894 ARANGLQSCVIVIRILRDLCQRVPTWSDFPNWALELLVEKAISSSSGPQSPGDALRRVFE 953
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG++L+ GPGLLDPCEK+P D LA M Q RED+T I+K+LGM+
Sbjct: 954 CISSGIILKGGPGLLDPCEKDPYDTLATMNDQQREDITSSAQFALRLLAFRQIYKVLGMD 1013
Query: 124 QLKLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEE 163
L S NRKRRRD+ S + + KKDKK+ E
Sbjct: 1014 PLSQTNQRFNVHS-NRKRRRDSDSVDSFEAEGKKDKKDYE 1052
>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2
SV=1
Length = 1065
Score = 122 bits (305), Expect = 2e-27, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 103/159 (64%), Gaps = 20/159 (12%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A QSCV+IIR+LR L Q W+ WALELLVEK I+S+ P SPGDALRRVFE
Sbjct: 905 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWALELLVEKAISSSSGPQSPGDALRRVFE 964
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG++L+ GPGLLDPCEK+P D LA M Q RED+T I+K+LGM+
Sbjct: 965 CISSGIILKGGPGLLDPCEKDPYDTLATMNDQQREDITSSAQFALRLLAFRQIYKVLGMD 1024
Query: 124 QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
L ++ + F + NRKRRRD+ + + KKDKK+
Sbjct: 1025 PLSQMNQRF--NVHNNRKRRRDSDGVDSFEAEGKKDKKD 1061
>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3
Length = 939
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 20/140 (14%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A Q CV++IR+LR L + W + WA+ELLVEK ++SA PL PGDA+RRV E
Sbjct: 780 ARASGLQPCVIVIRVLRDLCRRVPTWGALPAWAMELLVEKAVSSAAGPLGPGDAVRRVLE 839
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
VA+G LL GPGL DPCE++ DAL M Q+REDVT HK+LGM+
Sbjct: 840 CVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFRQTHKVLGMD 899
Query: 124 QLKLKRGFGGSRSANRKRRR 143
L + G RKR+R
Sbjct: 900 LLPPRHRLGAR---FRKRQR 916
>sp|Q6GL57|ILF3_XENTR Interleukin enhancer-binding factor 3 OS=Xenopus tropicalis GN=ilf3
PE=2 SV=1
Length = 698
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 75/125 (60%), Gaps = 17/125 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWEPLRGWPLELLCEKAIGTANRPMGAGEALRRVLE 277
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG+L+ GPGL DPCEKE DAL ++ Q RED+T +HK+LGM+
Sbjct: 278 CLSSGILMPDGPGLYDPCEKEASDALEHLERQQREDITQSAQHALRLAAFGQLHKVLGMD 337
Query: 124 QLKLK 128
L K
Sbjct: 338 PLPTK 342
>sp|Q6DD04|ILF3B_XENLA Interleukin enhancer-binding factor 3-B OS=Xenopus laevis GN=ilf3-b
PE=1 SV=2
Length = 898
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 17/125 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWEPLRGWPLELLCEKAIGTANRPMGAGEALRRVLE 277
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG+L+ GPGL DPCEK+ DAL ++ Q RED+T +HK+LGM+
Sbjct: 278 CLSSGILMPDGPGLYDPCEKDASDALEHLERQQREDITQSAQHALRLAAFGQLHKVLGMD 337
Query: 124 QLKLK 128
L K
Sbjct: 338 PLPTK 342
>sp|Q5ZIL4|STRBP_CHICK Spermatid perinuclear RNA-binding protein OS=Gallus gallus GN=STRBP
PE=2 SV=1
Length = 672
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 17/128 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 209 ARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVME 268
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+LL GPGL DPCE+EP DAL++M Q +E +T I+K+L M+
Sbjct: 269 CLASGILLPGGPGLHDPCEREPTDALSDMTVQQKEAITHSAQHALRLSAFGQIYKVLEMD 328
Query: 124 QLKLKRGF 131
L + F
Sbjct: 329 PLPSNKSF 336
>sp|Q9JKU6|STRBP_RAT Spermatid perinuclear RNA-binding protein OS=Rattus norvegicus
GN=Strbp PE=1 SV=1
Length = 671
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 17/128 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 210 ARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGXGEALRRVME 269
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+LL GPGL DPCE++P DAL+ M Q +ED+T I+K+L M+
Sbjct: 270 CLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFGQIYKVLEMD 329
Query: 124 QLKLKRGF 131
L + F
Sbjct: 330 PLPSSKPF 337
>sp|Q91WM1|STRBP_MOUSE Spermatid perinuclear RNA-binding protein OS=Mus musculus GN=Strbp
PE=1 SV=1
Length = 672
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 17/128 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 210 ARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVME 269
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+LL GPGL DPCE++P DAL+ M Q +ED+T I+K+L M+
Sbjct: 270 CLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFGQIYKVLEMD 329
Query: 124 QLKLKRGF 131
L + F
Sbjct: 330 PLPSSKPF 337
>sp|Q96SI9|STRBP_HUMAN Spermatid perinuclear RNA-binding protein OS=Homo sapiens GN=STRBP
PE=1 SV=1
Length = 672
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 17/128 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 210 ARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVME 269
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+LL GPGL DPCE++P DAL+ M Q +ED+T I+K+L M+
Sbjct: 270 CLASGILLPGGPGLHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMD 329
Query: 124 QLKLKRGF 131
L + F
Sbjct: 330 PLPSSKPF 337
>sp|Q08E27|STRBP_BOVIN Spermatid perinuclear RNA-binding protein OS=Bos taurus GN=STRBP
PE=2 SV=1
Length = 672
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 17/128 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 210 ARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVME 269
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+LL GPGL DPCE++P DAL+ M Q +ED+T I+K+L M+
Sbjct: 270 CLASGILLPGGPGLHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMD 329
Query: 124 QLKLKRGF 131
L + F
Sbjct: 330 PLPSSKPF 337
>sp|Q5R6Y5|STRBP_PONAB Spermatid perinuclear RNA-binding protein OS=Pongo abelii GN=STRBP
PE=2 SV=1
Length = 672
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 17/128 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 210 ARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNRPLGAGEALRRVME 269
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+LL GPGL DPCE++P DAL+ M Q +ED+T I+K+L M+
Sbjct: 270 CLASGILLPGGPGLHDPCERDPTDALSYMTIQQKEDITHSAQHALRLSAFGQIYKVLEMD 329
Query: 124 QLKLKRGF 131
L + F
Sbjct: 330 PLPSSKPF 337
>sp|Q9JIL3|ILF3_RAT Interleukin enhancer-binding factor 3 OS=Rattus norvegicus GN=Ilf3
PE=1 SV=2
Length = 897
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 17/125 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLE 277
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+++ G G+ DPCEKE DA+ ++ Q RED+T +HK+LGM+
Sbjct: 278 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD 337
Query: 124 QLKLK 128
L K
Sbjct: 338 PLPSK 342
>sp|Q12906|ILF3_HUMAN Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3 PE=1
SV=3
Length = 894
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 17/125 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLE 277
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+++ G G+ DPCEKE DA+ ++ Q RED+T +HK+LGM+
Sbjct: 278 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD 337
Query: 124 QLKLK 128
L K
Sbjct: 338 PLPSK 342
>sp|Q9Z1X4|ILF3_MOUSE Interleukin enhancer-binding factor 3 OS=Mus musculus GN=Ilf3 PE=1
SV=2
Length = 898
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 74/125 (59%), Gaps = 17/125 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLE 277
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+++ G G+ DPCEKE DA+ ++ Q RED+T +HK+LGM+
Sbjct: 278 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD 337
Query: 124 QLKLK 128
L K
Sbjct: 338 PLPSK 342
>sp|Q6NXA4|ILF3_DANRE Interleukin enhancer-binding factor 3 homolog OS=Danio rerio
GN=ilf3 PE=1 SV=2
Length = 833
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 25/142 (17%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W+ + W LELL EK I + P+ G+ALRRV E
Sbjct: 220 ARANGLRSCVIVIRILRDLCARVPTWSPLRGWPLELLCEKAIGTGNRPMGAGEALRRVLE 279
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+L+ G G+ DPCEKE DA++++ Q RED+T +HK+LGM+
Sbjct: 280 CLASGILMADGSGICDPCEKELTDAISHVDRQQREDITQSAQHALRLSAFGQLHKVLGMD 339
Query: 124 QLKLKRGFGGSRSANRKRRRDT 145
L K RK R DT
Sbjct: 340 PLPSK--------MPRKPRSDT 353
>sp|Q91550|ILF3A_XENLA Interleukin enhancer-binding factor 3-A OS=Xenopus laevis GN=ilf3-a
PE=1 SV=2
Length = 897
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 17/125 (13%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWEPLRGWPLELLCEKAIGTANRPMGAGEALRRVLE 277
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
++SG+L+ G GL DPCEK+ DAL ++ Q RED+T +HK+LGM+
Sbjct: 278 CLSSGILMPDGSGLYDPCEKDASDALEHLERQQREDITQSAQHALRLAAFGQLHKVLGMD 337
Query: 124 QLKLK 128
L K
Sbjct: 338 PLPSK 342
>sp|Q6DCD0|STRBP_XENLA Spermatid perinuclear RNA-binding protein OS=Xenopus laevis
GN=strbp PE=2 SV=1
Length = 686
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 25/156 (16%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV+++R+LR L W + W LEL+ EK I + PL G+ALRRV E
Sbjct: 210 ARANGLKSCVIVLRILRDLCNRVPTWAQLKGWPLELICEKAIGTCNRPLGAGEALRRVME 269
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+A G LL G GL DPCEKEP DALA M ++RE++T I+K+L M+
Sbjct: 270 CLAFGTLLPGGSGLHDPCEKEPTDALAYMTVKEREEITHSAQHALRLLAFGQIYKVLQMD 329
Query: 124 QLKLKRGFGGSRSANRKRR--------RDTSSGEKE 151
L + F +N R D SS EK+
Sbjct: 330 PLPSNKPFQKYSWSNSDREGSCLKRPFDDGSSDEKD 365
>sp|Q5RFJ1|ILF2_PONAB Interleukin enhancer-binding factor 2 OS=Pongo abelii GN=ILF2 PE=2
SV=1
Length = 390
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 26 QQSCVMIIRLLRHL---GQAWNLINPWALELLVEKVIASAGL--PLSPGDALRRVFEAVA 80
Q + ++IRLL+ L + + PW L+LL + + PL+ A RR + +A
Sbjct: 217 QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILA 276
Query: 81 SGLLLESGPGLLDPCEK 97
+GL L G+ DPCE
Sbjct: 277 AGLFLPGSVGITDPCES 293
>sp|Q9CXY6|ILF2_MOUSE Interleukin enhancer-binding factor 2 OS=Mus musculus GN=Ilf2 PE=1
SV=1
Length = 390
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 26 QQSCVMIIRLLRHL---GQAWNLINPWALELLVEKVIASAGL--PLSPGDALRRVFEAVA 80
Q + ++IRLL+ L + + PW L+LL + + PL+ A RR + +A
Sbjct: 217 QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILA 276
Query: 81 SGLLLESGPGLLDPCEK 97
+GL L G+ DPCE
Sbjct: 277 AGLFLPGSVGITDPCES 293
>sp|Q12905|ILF2_HUMAN Interleukin enhancer-binding factor 2 OS=Homo sapiens GN=ILF2 PE=1
SV=2
Length = 390
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 26 QQSCVMIIRLLRHL---GQAWNLINPWALELLVEKVIASAGL--PLSPGDALRRVFEAVA 80
Q + ++IRLL+ L + + PW L+LL + + PL+ A RR + +A
Sbjct: 217 QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILA 276
Query: 81 SGLLLESGPGLLDPCEK 97
+GL L G+ DPCE
Sbjct: 277 AGLFLPGSVGITDPCES 293
>sp|Q7TP98|ILF2_RAT Interleukin enhancer-binding factor 2 OS=Rattus norvegicus GN=Ilf2
PE=2 SV=1
Length = 463
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 26 QQSCVMIIRLLRHL---GQAWNLINPWALELLVEKVIASAGL--PLSPGDALRRVFEAVA 80
Q + ++IRLL+ L + + PW L+LL + + PL+ A RR + +A
Sbjct: 290 QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILA 349
Query: 81 SGLLLESGPGLLDPCEK 97
+GL L G+ DPCE
Sbjct: 350 AGLFLPGSVGITDPCES 366
>sp|Q9VG73|ILF2_DROME Interleukin enhancer-binding factor 2 homolog OS=Drosophila
melanogaster GN=CG5641 PE=2 SV=1
Length = 396
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 26 QQSCVMIIRLLRHLGQAWNLINP---WALELLVEKVIAS----AGLPLSPGDALRRVFEA 78
S ++IR+L+ L + ++ +P W L+L+ I + LP++ A RRVF+
Sbjct: 224 HSSIKVLIRILKDLTRRFDAFSPLSAWMLDLIAHLAIMNNPSRQALPINL--AFRRVFQL 281
Query: 79 VASGLLLESGPGLLDPCE 96
+++GL L G+ DP E
Sbjct: 282 LSAGLFLPGSAGITDPTE 299
>sp|Q6NZ06|ILF2_DANRE Interleukin enhancer-binding factor 2 homolog OS=Danio rerio
GN=ilf2 PE=2 SV=1
Length = 387
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 26 QQSCVMIIRLLRHL---GQAWNLINPWALELLVEKVIAS--AGLPLSPGDALRRVFEAVA 80
Q + ++IRLL+ + + + PW L+LL + + + PL A RR + +A
Sbjct: 217 QSTVKVLIRLLKDIRVRFPGFEPLTPWILDLLGHSAVMNHPSRQPLPLNVAYRRCLQMLA 276
Query: 81 SGLLLESGPGLLDPCEK 97
+GL L G+ DPCE
Sbjct: 277 AGLFLPGSVGITDPCES 293
>sp|Q6P8G1|ILF2_XENTR Interleukin enhancer-binding factor 2 homolog OS=Xenopus tropicalis
GN=ilf2 PE=2 SV=1
Length = 388
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 31 MIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGL--PLSPGDALRRVFEAVASGLLL 85
++IRLL+ L + + PW L+LL + + PL+ + +R + +A+GL L
Sbjct: 221 VLIRLLKDLRSRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVSYKRCLQMLAAGLFL 280
Query: 86 ESGPGLLDPCE 96
G+ DPCE
Sbjct: 281 PGSVGITDPCE 291
>sp|Q7NRL4|THIG_CHRVO Thiazole synthase OS=Chromobacterium violaceum (strain ATCC 12472 /
DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC
9757) GN=thiG PE=3 SV=1
Length = 264
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 26 QQSCVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
Q C I+ L +G ++NPW L+L++E+ VI AG+
Sbjct: 148 QIGCCAIMPLASLIGSGMGILNPWNLQLIIEQSKVPVIVDAGV 190
>sp|Q2YCZ2|THIG_NITMU Thiazole synthase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=thiG PE=3 SV=1
Length = 264
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 29 CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
CV I+ L +G ++NPW L++++E VI AG+
Sbjct: 150 CVAIMPLASLIGSGMGILNPWNLQIIIENAKVPVIVDAGV 189
>sp|Q3SH10|THIG_THIDA Thiazole synthase OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=thiG PE=3 SV=1
Length = 262
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 29 CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
CV ++ L +G ++NPW L++++++ VI AG+
Sbjct: 150 CVAVMPLASLIGSGMGILNPWNLQIIIDRLTVPVIVDAGV 189
>sp|Q82XI7|THIG_NITEU Thiazole synthase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=thiG PE=3 SV=1
Length = 268
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 29 CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
C I+ L +G ++NPW L+++++K VI AG+
Sbjct: 150 CAAIMPLASLIGSGMGILNPWNLQIIIDKATVPVIVDAGV 189
>sp|Q478Z2|THIG_DECAR Thiazole synthase OS=Dechloromonas aromatica (strain RCB) GN=thiG
PE=3 SV=1
Length = 260
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 19 TYAKAEPQQS-------CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
Y +P Q CV ++ L +G ++NPW L L+++ +I AG+
Sbjct: 133 VYCADDPIQCKMLEEIGCVAVMPLASLIGSGMGIVNPWNLRLIIDNAKVPIIVDAGV 189
>sp|Q89FU2|MURE_BRAJA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Bradyrhizobium japonicum (strain USDA 110)
GN=murE PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 20/151 (13%)
Query: 36 LRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAV-----ASGLLLESG-- 88
+ H G+ + ++ P A E VE + SAGL + G VF ++ A G L G
Sbjct: 282 VEHRGKRYVVLLPLAGEFQVENALVSAGLAIGTGSDAANVFASLEHLEGAKGRLERVGER 341
Query: 89 ---PGLLDPCEKEPRDALANMPAQDREDVTIHKLLGMEQLKLKRGFGGSRSANRKRRRDT 145
P +D K DALA R +L + G GG R A ++
Sbjct: 342 NGAPIFVDYAHKP--DALAKALQALRP-------YAKRRLVVVFGAGGDRDAGKRPIMGE 392
Query: 146 SSGEKEDGG-VKKDKKEEEESAAIKTETMET 175
+ E DG + D E+ AI+ + T
Sbjct: 393 IAAENADGVIITDDNPRSEQPEAIRAAILAT 423
>sp|Q0AJ67|THIG_NITEC Thiazole synthase OS=Nitrosomonas eutropha (strain C91) GN=thiG
PE=3 SV=1
Length = 268
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 29 CVMIIRLLRHLGQAWNLINPWALELLVEKV 58
C I+ L +G ++NPW L+++++KV
Sbjct: 150 CAAIMPLASLIGSGMGILNPWNLQIIIDKV 179
>sp|Q5P5J1|THIG_AROAE Thiazole synthase OS=Aromatoleum aromaticum (strain EbN1) GN=thiG
PE=3 SV=1
Length = 261
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 19 TYAKAEPQQS-------CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
Y +P Q+ CV ++ L +G ++NPW L L++++ V+ AG+
Sbjct: 134 VYCADDPIQAKMLEDIGCVAVMPLASLIGSGMGILNPWNLRLIIDQANVPVLVDAGV 190
>sp|Q2KUI1|THIG_BORA1 Thiazole synthase OS=Bordetella avium (strain 197N) GN=thiG PE=3
SV=1
Length = 265
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 19 TYAKAEPQQS-------CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGLPLS 67
Y +P Q V I+ L +G ++NPW L L++++ VI AGL +
Sbjct: 136 VYCTDDPIQCRMLEDIGVVAIMPLASLIGSGMGILNPWNLRLILDQSKLPVIVDAGLG-T 194
Query: 68 PGDALRRVFEAVASGLLLESGPGLLDP 94
P DA + A+ L+ + G DP
Sbjct: 195 PSDAAVAMEMGCAAVLMNTAISGAKDP 221
>sp|A1KCM9|THIG_AZOSB Thiazole synthase OS=Azoarcus sp. (strain BH72) GN=thiG PE=3 SV=1
Length = 261
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 19 TYAKAEPQQS-------CVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
Y +P Q+ CV ++ L +G ++NPW L L+++ V+ AG+
Sbjct: 134 VYCADDPIQAKMLEEIGCVAVMPLASLIGSGMGILNPWNLRLIIDNAKVPVLVDAGV 190
>sp|Q4X0Z7|LONM_ASPFU Lon protease homolog, mitochondrial OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pim1
PE=3 SV=1
Length = 1108
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 133 GSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESAAIKTETME 174
G+ ++ RRRD +GEKE GV++D K+E S K++ E
Sbjct: 107 GAPTSASGRRRDKVAGEKEQRGVEEDAKKENVSIEGKSDPTE 148
>sp|Q1GXY7|THIG_METFK Thiazole synthase OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=thiG PE=3 SV=1
Length = 259
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEK----VIASAGL 64
AK C ++ L +G ++NPW L++++E V+ AG+
Sbjct: 142 AKQLEDMGCAAVMPLASLIGSGMGILNPWNLQIIIENAKIPVLVDAGV 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,281,155
Number of Sequences: 539616
Number of extensions: 2969270
Number of successful extensions: 9337
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 9223
Number of HSP's gapped (non-prelim): 105
length of query: 176
length of database: 191,569,459
effective HSP length: 110
effective length of query: 66
effective length of database: 132,211,699
effective search space: 8725972134
effective search space used: 8725972134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)