Query psy2829
Match_columns 176
No_of_seqs 111 out of 137
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 17:58:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07528 DZF: DZF domain; Int 100.0 4.8E-54 1E-58 366.7 8.0 119 8-128 111-248 (248)
2 smart00572 DZF domain in DSRM 100.0 7.4E-49 1.6E-53 336.2 8.5 120 7-128 110-246 (246)
3 KOG3793|consensus 100.0 4.4E-37 9.5E-42 270.0 7.7 119 7-128 188-325 (362)
4 KOG3792|consensus 100.0 9.3E-35 2E-39 276.5 7.0 135 7-148 647-798 (816)
5 KOG3792|consensus 100.0 3.9E-31 8.5E-36 251.8 9.7 146 10-157 192-355 (816)
6 PF10421 OAS1_C: 2'-5'-oligoad 92.6 0.33 7.2E-06 41.2 5.9 54 28-81 43-106 (190)
7 PF03813 Nrap: Nrap protein; 82.9 2.4 5.2E-05 43.1 5.6 99 6-115 664-768 (972)
8 PRK13300 tRNA CCA-pyrophosphor 78.1 4 8.6E-05 38.6 5.0 88 12-115 138-248 (447)
9 TIGR03671 cca_archaeal CCA-add 76.5 5.2 0.00011 37.5 5.2 88 12-115 136-245 (408)
10 KOG2054|consensus 62.0 13 0.00027 39.1 4.8 100 5-115 799-904 (1121)
11 cd08767 Cdt1_c The C-terminal 54.2 27 0.00059 27.3 4.5 52 27-80 41-92 (126)
12 PF03281 Mab-21: Mab-21 protei 39.5 2.3E+02 0.005 24.0 8.3 80 28-115 192-284 (292)
13 TIGR03125 citrate_citG triphos 36.4 31 0.00066 30.5 2.6 29 83-115 16-44 (275)
14 PF12330 DUF3635: Domain of un 32.5 1.4E+02 0.003 22.6 5.3 49 31-79 13-67 (98)
15 PRK01237 triphosphoribosyl-dep 32.2 39 0.00085 30.1 2.6 29 83-115 30-58 (289)
16 TIGR03132 malonate_mdcB tripho 25.1 62 0.0013 28.5 2.6 29 83-115 17-45 (272)
17 PF00317 Ribonuc_red_lgN: Ribo 25.1 31 0.00067 24.6 0.6 25 67-91 51-75 (83)
18 PF09193 CholecysA-Rec_N: Chol 24.9 38 0.00082 23.2 0.9 15 84-98 7-21 (47)
19 PLN02749 Uncharacterized prote 24.5 2.2E+02 0.0048 24.2 5.5 96 17-114 3-106 (173)
20 PRK09897 hypothetical protein; 23.2 1.6E+02 0.0034 28.4 5.0 56 29-85 349-408 (534)
21 PF14837 INTS5_N: Integrator c 22.3 1.4E+02 0.0031 25.8 4.2 37 42-78 101-143 (213)
22 PF09249 tRNA_NucTransf2: tRNA 21.7 1.1E+02 0.0023 24.4 3.0 70 33-114 3-96 (114)
23 COG1595 RpoE DNA-directed RNA 21.5 1.9E+02 0.0041 22.6 4.4 31 31-61 49-81 (182)
No 1
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=100.00 E-value=4.8e-54 Score=366.69 Aligned_cols=119 Identities=55% Similarity=0.884 Sum_probs=115.8
Q ss_pred ccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhhc
Q psy2829 8 HFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIA--SAGLPLSPGDALRRVFEAVASG 82 (176)
Q Consensus 8 ~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~--sa~~pLs~g~AfRRvlE~lAsG 82 (176)
..++||+ +|||+||+++|||++|||||||||+ +|+||++|+|||||||||+ ++++||+||+||||||||||||
T Consensus 111 LaalRha--kWFq~~a~~l~s~~~viRIlrDl~~R~p~w~~L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~lasG 188 (248)
T PF07528_consen 111 LAALRHA--KWFQARANGLQSCVIVIRILRDLRQRVPTWQPLSSWALELLVEKAISNNSSRQPLSPGDAFRRVLECLASG 188 (248)
T ss_pred HHHHHHh--HHHHHHhccCCCcceehhhHHHHHHhCCCCCCCChhHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHhCc
Confidence 5789999 9999999999999999999999999 9999999999999999999 6899999999999999999999
Q ss_pred cccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829 83 LLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK 128 (176)
Q Consensus 83 ilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~ 128 (176)
||||||+||.||||++++|+++.||.||||||| ||||||||++|++
T Consensus 189 illp~~~gl~DPcE~~~~~~~~~lt~qq~e~it~sAQ~~LRllafgq~~kvLg~d~~~s~ 248 (248)
T PF07528_consen 189 ILLPGSPGLRDPCEKDPVDVLDTLTLQQREDITSSAQTALRLLAFGQIHKVLGMDPLPSK 248 (248)
T ss_pred eecCCCCCCcCCCCCCCceeeccCCHHHHHHHHHHHHHHHHHHHhcCcceeccCCCCCCC
Confidence 999999999999999999999999999999999 9999999999864
No 2
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=100.00 E-value=7.4e-49 Score=336.23 Aligned_cols=120 Identities=53% Similarity=0.810 Sum_probs=116.9
Q ss_pred cccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcc
Q psy2829 7 FHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGL 83 (176)
Q Consensus 7 ~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGi 83 (176)
...++||+ +|||+||+++|+|++|||||||+|+ +|+||++|+||||+||+++++++|+++|+|||||||+||+|+
T Consensus 110 aLAalRha--kWFq~~a~~l~s~~iviRilKd~~~R~~~~~pL~~w~iELl~~~~i~~~~~~l~~~~a~RR~fe~lAsG~ 187 (246)
T smart00572 110 ALASLRHA--KWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLSGWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGI 187 (246)
T ss_pred HHHHHHHh--HHHHHhccCCcchhhHHHHHHHHHHhcccccccccccHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcc
Confidence 35789999 9999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829 84 LLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK 128 (176)
Q Consensus 84 lLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~ 128 (176)
|||||+||.||||+++.||++.||+||||+|| ||||||||++|++
T Consensus 188 l~p~~~gI~DPce~~~~nv~~~lT~qqrd~It~sAQ~alRl~Afgq~~kvLGm~~l~~~ 246 (246)
T smart00572 188 LLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFGQIHKILGMDPLPSM 246 (246)
T ss_pred CcCCCCCCcCCCCCCcccHHHhcCHHHHHHHHHHHHHHHHHHHhcchheeeccCCCCCC
Confidence 99999999999999999999999999999999 9999999999864
No 3
>KOG3793|consensus
Probab=100.00 E-value=4.4e-37 Score=269.98 Aligned_cols=119 Identities=27% Similarity=0.399 Sum_probs=114.4
Q ss_pred cccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhh
Q psy2829 7 FHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIAS--AGLPLSPGDALRRVFEAVAS 81 (176)
Q Consensus 7 ~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~s--a~~pLs~g~AfRRvlE~lAs 81 (176)
-+|++||+ +||+++|. +|+.+++||||||++. +|+||+.|+++||+|+|++| ++|||.+|.|||||||+||+
T Consensus 188 ~l~a~RH~--~WFee~A~-~s~~~~lir~LKDlr~r~~~F~PLs~W~ldll~h~avmNnp~RQ~l~ln~Afrr~~qilaA 264 (362)
T KOG3793|consen 188 ALAAIRHA--RWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA 264 (362)
T ss_pred HHHHHhhh--hhhhhhhh-HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHHh
Confidence 36899999 99999997 7889999999999998 99999999999999999999 59999999999999999999
Q ss_pred ccccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829 82 GLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK 128 (176)
Q Consensus 82 GilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~ 128 (176)
|+|||||+||.||||+++.++|+.||+.|+|.+| |+.|||+++..+.
T Consensus 265 G~FlPgS~gitDP~es~~~rvh~~~tLpq~D~~c~~aqtL~RilA~ggyraILGl~g~~~~ 325 (362)
T KOG3793|consen 265 GLFLPGSVGITDPCESGNFRVHTVMTLPQQDMVCYTAQTLVRILAHGGYRAILGLEGDASY 325 (362)
T ss_pred cccCCCCCCcCCCCCCCceeecccccccccccchhHHHHHHHHHHcCCcHHHhCCCCchHH
Confidence 9999999999999999999999999999999998 9999999998766
No 4
>KOG3792|consensus
Probab=100.00 E-value=9.3e-35 Score=276.46 Aligned_cols=135 Identities=49% Similarity=0.757 Sum_probs=123.6
Q ss_pred cccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcc
Q psy2829 7 FHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGL 83 (176)
Q Consensus 7 ~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGi 83 (176)
---++||+ +|||++|.+|+||++|||+|||||+ +|+.|.+|.||||++++|+|+..||++++||||++|++|+|
T Consensus 647 alA~lr~~--~wf~a~at~l~sc~~vir~lrdl~~~~~~~g~l~~~~~el~ve~~i~sap~pl~~~d~~rri~e~~asg- 723 (816)
T KOG3792|consen 647 ALASLRHA--KWFQARATGLQSCVSVIRLLRDLCNRVPEWGCLPDWKMELLVEKIISSAPMPLGPGDAFRRIVEALASG- 723 (816)
T ss_pred hhhhhccc--cccccccccccceeeehHhHHhHhhcCCCcCccchhhhhhhhhcccccCCCCCCchhhhhhhHHhhccc-
Confidence 34578999 9999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCccccccCCCCCcccccccCCCCCC
Q psy2829 84 LLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLKRGFGGSRSANRKRRRDTSSG 148 (176)
Q Consensus 84 lLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~~~~~~~~~~~~kr~r~~~~~ 148 (176)
|-.+|||.||||.+++|++..||+|||||+| +|+|||||.+|...+|. +..|||+|.++..
T Consensus 724 -~~y~~~l~dpce~~qt~~l~~~t~q~re~~t~~aQ~~~ry~af~q~~~vlG~d~l~~~~r~~---~~~r~~r~~~~~~ 798 (816)
T KOG3792|consen 724 -LLYGPGLSDPCETDQTDALDALTDQEREDLTASAQNFLRYIAFRQIHKVLGMDRLPDTPRDA---PMLRKRRRSNGNA 798 (816)
T ss_pred -cccCcccCCccccCCcchhcccChhhhhhhhHHHHHHHHHHHhhccccccCcccCCcccccc---hhhcccccCCCcc
Confidence 5578999999999999999999999999999 99999999999886653 4567777665543
No 5
>KOG3792|consensus
Probab=99.97 E-value=3.9e-31 Score=251.83 Aligned_cols=146 Identities=30% Similarity=0.356 Sum_probs=128.6
Q ss_pred ccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhccccC
Q psy2829 10 GRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLE 86 (176)
Q Consensus 10 ~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGilLp 86 (176)
+++|. .|||++|+++|+|+++||++||||+ +|+++.+|++||+|++||.++..|...|+|+|||+||+++||.++
T Consensus 192 qL~~~--kw~k~~a~G~qs~re~lr~~r~l~krvpt~~~~kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~~k 269 (816)
T KOG3792|consen 192 QLHYC--KWCKISAAGPQTYREHLRGQKHLKKEVPTNGPLKGWPLELHCEKSIVTCSGPDAYGAALRRVKECKVSKLHKK 269 (816)
T ss_pred Hhhhh--HHHHHhccccHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHhhccccCccchHHHHHHHHHhhhhccccc
Confidence 57888 9999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc-ccCCCCCcccccccCCCCCCCCC
Q psy2829 87 SGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK-RGFGGSRSANRKRRRDTSSGEKE 151 (176)
Q Consensus 87 gs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~-~~~~~~~~~~~kr~r~~~~~~~~ 151 (176)
+|+||.||||++.+|++..|+.||+|+|| +|+|||||++|+. +.+..--....+.+|.+++..++
T Consensus 270 ~G~gi~d~cek~~tds~~~le~qqrEdit~Saq~A~Rl~aagq~~kvl~mdplp~~~p~~~~a~~~~~~~kpvgeE~v~E 349 (816)
T KOG3792|consen 270 LGKGIPDPCEKDATDSLGQLEAQQREDITASAQHALRLAAAGQLTKVLGMDPLPSGKPAQPNAMAAASEVKPVGEEYVEE 349 (816)
T ss_pred CCCCCCCccccccccCccchhhcccCccchhhhhhhcchhcccchhhhccCcCccccccccccccccccccCCccccccc
Confidence 99999999999999999999999999998 9999999999966 44431013456666677665554
Q ss_pred Cccccc
Q psy2829 152 DGGVKK 157 (176)
Q Consensus 152 ~~~~kk 157 (176)
+.+.++
T Consensus 350 ekd~~g 355 (816)
T KOG3792|consen 350 EKDPEG 355 (816)
T ss_pred ccCccc
Confidence 443333
No 6
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=92.61 E-value=0.33 Score=41.19 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=40.6
Q ss_pred CchhhHHHHHHHHh--hcc-----CC-ChhHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhh
Q psy2829 28 SCVMIIRLLRHLGQ--AWN-----LI-NPWALELLVEKVIASA--GLPLSPGDALRRVFEAVAS 81 (176)
Q Consensus 28 sc~ivIRILRDlr~--~w~-----~L-s~W~lELLv~kai~sa--~~pLs~g~AfRRvlE~lAs 81 (176)
..+-+||+.|.-.+ .|. ++ +.++||||+.||-... ....+..++||=|||+|..
T Consensus 43 klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g~~~~~F~~a~gfrtVLeLi~~ 106 (190)
T PF10421_consen 43 KLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQGCGAEDFSTAEGFRTVLELIQK 106 (190)
T ss_dssp HHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHHT-SSS--HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhcCCCcCcchhhhHhHHHHHHhC
Confidence 35679999999888 333 44 4699999999999884 3447889999999999764
No 7
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=82.87 E-value=2.4 Score=43.10 Aligned_cols=99 Identities=23% Similarity=0.213 Sum_probs=75.8
Q ss_pred ccccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q psy2829 6 RFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASA---GLPLSPGDALRRVFEAV 79 (176)
Q Consensus 6 ~~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa---~~pLs~g~AfRRvlE~l 79 (176)
+|...-.|. .+.+.-++..++.-..||+.|---. -=..+++=++||||-++..+. ..|-|+-.+|=|+|++|
T Consensus 664 ~~~~~p~h~--~~i~~l~~~~p~fs~tvRL~KrW~~shlLs~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lL 741 (972)
T PF03813_consen 664 RFIHLPKHT--SAIHGLHTRFPSFSPTVRLAKRWLSSHLLSGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLL 741 (972)
T ss_pred HHHhhHHHH--HHHHHHHhhCCchhHHHHHHHHHHHhccCcccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHH
Confidence 455666688 8999999999999999999997655 225678889999999999874 45799999999999999
Q ss_pred hhccccCCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 80 ASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 80 AsGilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
|+==.- ..|=|.|+ ...|+.+++.+|.
T Consensus 742 s~~dW~-~~PLiVd~--------~~~l~~~~~~~i~ 768 (972)
T PF03813_consen 742 STWDWR-EEPLIVDF--------NNELTEEDRAEIE 768 (972)
T ss_pred HhCCCC-cCCEEEEC--------CCCCCHHHHHHHH
Confidence 984222 22334443 3578888887775
No 8
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=78.15 E-value=4 Score=38.60 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=62.5
Q ss_pred CCccchHHHhhcCCCCCchhhHHHHHHHHhhc---------cCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-
Q psy2829 12 PHLLPLATYAKAEPQQSCVMIIRLLRHLGQAW---------NLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAS- 81 (176)
Q Consensus 12 ~h~~~~WFqara~~l~sc~ivIRILRDlr~~w---------~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAs- 81 (176)
-|+ +|..+|-++. -.-.||+||-+..+. +++|++++|||+-+ .-.|.-+++..+.
T Consensus 138 ~H~--~fv~~rl~~~--~~d~VRLlK~f~k~~gvYGsE~k~~GFSGYl~ELLv~~-----------yG~F~~~l~~a~~w 202 (447)
T PRK13300 138 FHT--KYVKERLKGK--LEDEVRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIH-----------YGSFENVLKAASKW 202 (447)
T ss_pred HHH--HHHHHhhhhh--HHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHH-----------hCCHHHHHHHHHhC
Confidence 377 9999888753 356899999998832 46999999999987 1345556655554
Q ss_pred ----ccccC--------CCCC-CCCCCcCCCcccccCCChhhhhhhh
Q psy2829 82 ----GLLLE--------SGPG-LLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 82 ----GilLp--------gs~G-L~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
-|-++ ++|= +.||..+ ..+|.+.+|.+.+..+-
T Consensus 203 ~~~~~I~~~~~~~~~~f~~PlvViDPvDp-~RNVAaa~S~~~~~~fv 248 (447)
T PRK13300 203 KPPVKIDLEKHGKEYKFDDPLVVIDPVDP-NRNVAAALSLENLATFI 248 (447)
T ss_pred CCCceEeccccCccccCCCCEEEeCCCCC-cchHHHHcCHHHHHHHH
Confidence 11122 2222 4899887 68999999999987764
No 9
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=76.55 E-value=5.2 Score=37.51 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=60.4
Q ss_pred CCccchHHHhhcCCCCCchhhHHHHHHHHhh---------ccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-
Q psy2829 12 PHLLPLATYAKAEPQQSCVMIIRLLRHLGQA---------WNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAS- 81 (176)
Q Consensus 12 ~h~~~~WFqara~~l~sc~ivIRILRDlr~~---------w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAs- 81 (176)
-|+ +|..+|-++. -.-.||+||-+..+ =+++|++++|||+-+= -.|.-+++.++.
T Consensus 136 ~H~--~fv~~rl~~~--~~d~VRLlK~f~k~igvYGsE~~~~GFSGYl~ELLv~~y-----------G~F~~~l~~a~~w 200 (408)
T TIGR03671 136 FHT--RYVLERLDGK--LRDDVRLLKQFLKGIGVYGSELKTRGFSGYLCELLVIHY-----------GSFENVLKAASKW 200 (408)
T ss_pred HHH--HHHHHhhhhh--HHHHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh-----------CCHHHHHHHHHhc
Confidence 377 8998888763 34699999999882 2579999999999871 234444444332
Q ss_pred --cccc-C--------CCC-CCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 82 --GLLL-E--------SGP-GLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 82 --GilL-p--------gs~-GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
|+.+ + ++| -+.||..+ ..+|.+.+|.+.+..+-
T Consensus 201 k~~~~id~~~~~~~~f~~PlvViDPvDp-~RNVAaalS~~~~~~fv 245 (408)
T TIGR03671 201 KPGVVIDIEEHGTKKFDDPLVVIDPVDP-KRNVAAALSLENLARFI 245 (408)
T ss_pred CCCeEEecCccccccCCCCEEEeCCCCC-cchHHHHcCHHHHHHHH
Confidence 1111 0 222 25889887 68999999999887764
No 10
>KOG2054|consensus
Probab=62.01 E-value=13 Score=39.12 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=73.6
Q ss_pred cccccccCCccchHHHhhcCCCCCchhhHHHHHHHHh--hc-cCCChhHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q psy2829 5 KRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ--AW-NLINPWALELLVEKVIASA---GLPLSPGDALRRVFEA 78 (176)
Q Consensus 5 ~~~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~--~w-~~Ls~W~lELLv~kai~sa---~~pLs~g~AfRRvlE~ 78 (176)
+.|++.-+|+ .=.|.-+...+....++|+.|---. -+ +...+=++||||-+.+.+. ..|-|+...|=|+|.+
T Consensus 799 ~~~~~~p~ht--~aL~~l~qsh~~ys~vvrLaKrWl~shLL~~h~~De~iELLva~lf~~p~p~~~psS~~~gFlRfL~l 876 (1121)
T KOG2054|consen 799 KKFIILPLHT--LALQSLSQSHPFYSSVVRLAKRWLGSHLLSGHHLDEAIELLVAALFLKPGPLVPPSSPENGFLRFLSL 876 (1121)
T ss_pred HHHhhhHHHH--HHHHHHhhcccchhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhcCccCCCCCCCcchhHHHHHHH
Confidence 4577778888 6678888888999999999996544 11 3444889999999999984 4567888999999999
Q ss_pred HhhccccCCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 79 VASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 79 lAsGilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
||.==.- +-|=| +|....++.+|+.+++
T Consensus 877 lS~~dW~-~~PLI--------vd~nn~~~ed~~~e~~ 904 (1121)
T KOG2054|consen 877 LSTWDWK-FDPLI--------VDFNNGFPEDERSELE 904 (1121)
T ss_pred HhcCccc-CCceE--------EEcCCCCcHHHHHHHH
Confidence 9963211 22222 3445567777777776
No 11
>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase. Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replicat
Probab=54.24 E-value=27 Score=27.25 Aligned_cols=52 Identities=27% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCchhhHHHHHHHHhhccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q psy2829 27 QSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVA 80 (176)
Q Consensus 27 ~sc~ivIRILRDlr~~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lA 80 (176)
..-.-+.|+++.+... ..=+.-.+|.++++.+.|++.+++++++=. .+.+|+
T Consensus 41 ~rLP~la~~v~~if~s-~~k~~l~~e~l~~kl~~S~~~~~s~~E~E~-~l~LL~ 92 (126)
T cd08767 41 ARLPELARILRNIFVS-EKKTVLPLEELVYKLQASYPSILSRGEVEE-HLRLLA 92 (126)
T ss_pred HhHHHHHHHHHHHHHh-cccccccHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Confidence 3344678888888773 334456789999999999999999988633 334444
No 12
>PF03281 Mab-21: Mab-21 protein
Probab=39.45 E-value=2.3e+02 Score=23.99 Aligned_cols=80 Identities=13% Similarity=0.244 Sum_probs=55.4
Q ss_pred CchhhHHHHHHHHh----hccCCChhHHHHHHHHHHHhCCC-----CCCHHHHHHHHH----HHHhhccccCCCCCCCCC
Q psy2829 28 SCVMIIRLLRHLGQ----AWNLINPWALELLVEKVIASAGL-----PLSPGDALRRVF----EAVASGLLLESGPGLLDP 94 (176)
Q Consensus 28 sc~ivIRILRDlr~----~w~~Ls~W~lELLv~kai~sa~~-----pLs~g~AfRRvl----E~lAsGilLpgs~GL~DP 94 (176)
.-.-.+||||.|+. ....|+...+.-++-+.+...+. +-.+++.|.++| .||..|- ||. .-.|
T Consensus 192 ~~~~~l~llk~l~~~~~~~~~~l~syhLkt~ll~~~~~~p~~~~W~~~~l~~~l~~~l~~L~~~L~~~~-Lph---ff~~ 267 (292)
T PF03281_consen 192 CRKKCLRLLKALRDRHLTNLSGLSSYHLKTVLLWLCEKHPSSSDWSEENLGERLLDLLDFLIKCLQEGR-LPH---FFIP 267 (292)
T ss_pred cHHHHHHHHHHHHHhccccCCCccHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHhcCC-CCc---cCCC
Confidence 33567899999988 36899999888887777776433 355677776665 6777774 222 2222
Q ss_pred CcCCCcccccCCChhhhhhhh
Q psy2829 95 CEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 95 CEk~~~dv~~~Lt~QQredIT 115 (176)
+.+.+..++..+.+++-
T Consensus 268 ----~~NLf~~~~~~~~~~~~ 284 (292)
T PF03281_consen 268 ----NLNLFQHLSPEELDELA 284 (292)
T ss_pred ----CcccCCCCCHHHHHHHH
Confidence 57888899888877763
No 13
>TIGR03125 citrate_citG triphosphoribosyl-dephospho-CoA synthase CitG. Triphosphoribosyl-dephospho-CoA is transferred to, and becomes the prosthetic group of, the respective acyl carrier protein subunits of both citrate lyase and malonate decarboxylase. Members of this protein family are triphosphoribosyl-dephospho-CoA synthases specifically from citrate lyase systems. This protein sometimes occurs as a fusion protein with CitX, the phosphoribosyl-dephospho-CoA transferase.
Probab=36.42 E-value=31 Score=30.47 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=22.0
Q ss_pred cccCCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 83 LLLESGPGLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 83 ilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
-+.|. |||+||+..| +|.+|+..-..+-.
T Consensus 16 ~l~PK-PGLVd~~~~G---aH~DMd~~tf~~S~ 44 (275)
T TIGR03125 16 SLTPK-PGLVDPINNG---AHKDMDLYTFIDSA 44 (275)
T ss_pred ccCCC-CCcCCCCCCC---CCCCCCHHHHHHHH
Confidence 45566 9999999875 67888888776654
No 14
>PF12330 DUF3635: Domain of unknown function (DUF3635); InterPro: IPR024604 This domain may be a potential Haspin-related leucine-zipper. A leucine zipper was proposed to be present towards the C terminus of human Haspin, (up-stream of the current family) []; however, as this domain would appear to span several helices and be largely within a loop structure [], the actual zipper might be further downstream, and be represented by this entry, which is the very C-terminal part of the Schizosaccharomyces pombe sequence.; PDB: 2WB8_A 3F2N_A 3FMD_A 3DLZ_A 2VUW_A 3IQ7_A 3E7V_A.
Probab=32.48 E-value=1.4e+02 Score=22.62 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=33.2
Q ss_pred hhHHHHHHHHh-hccCCCh----hHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q psy2829 31 MIIRLLRHLGQ-AWNLINP----WALELLVEKVIASAGLP-LSPGDALRRVFEAV 79 (176)
Q Consensus 31 ivIRILRDlr~-~w~~Ls~----W~lELLv~kai~sa~~p-Ls~g~AfRRvlE~l 79 (176)
-|-|.||.++. .|+.+.| ..|.+|+++.|.....+ .+..++.|..++.|
T Consensus 13 diYr~Mr~~~~~~W~~f~P~TNvlWL~YL~~kLl~~~~~~~~~~~~~~r~~~~~l 67 (98)
T PF12330_consen 13 DIYRLMRSLTKNDWSEFEPKTNVLWLHYLADKLLDKKKYKKKPSTKLQRKKLKKL 67 (98)
T ss_dssp HHHHHHHHHHTT-TTS--THHHHHHHHHHHHHHHHS--BSSTS-SHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcchhcCCHHHHHHHHHHHHHHHHHccCCCCCCcHHHHHHHHHH
Confidence 36799999998 8888765 45779999999774333 33777888888877
No 15
>PRK01237 triphosphoribosyl-dephospho-CoA synthase; Validated
Probab=32.21 E-value=39 Score=30.07 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=21.6
Q ss_pred cccCCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 83 LLLESGPGLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 83 ilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
-+.|. |||+||...+ +|.+|+..-..+-.
T Consensus 30 ~l~PK-PGLVd~~~~G---sH~DMd~~tf~~S~ 58 (289)
T PRK01237 30 TLSPK-PGLVDRRGSG---AHPDLDLFLMIRSA 58 (289)
T ss_pred ccCCC-CCcCCCCCCC---CCCCCCHHHHHHHH
Confidence 44555 9999999875 67888887766554
No 16
>TIGR03132 malonate_mdcB triphosphoribosyl-dephospho-CoA synthase MdcB. This protein acts in cofactor biosynthesis, preparing the coenzyme A derivative that becomes attached to the malonate decarboxylase acyl carrier protein (or delta subunit). The closely related protein CitG of citrate lyase produces the same molecule, but the two families are nonetheless readily separated.
Probab=25.12 E-value=62 Score=28.52 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=21.8
Q ss_pred cccCCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 83 LLLESGPGLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 83 ilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
-+.|. |||+||...+ +|.+|+..-..+-.
T Consensus 17 ~l~PK-PGLVd~~~~G---sH~DMd~~tf~~S~ 45 (272)
T TIGR03132 17 ALTPK-PGLVDPRDSG---AHTDMDAALFLRSA 45 (272)
T ss_pred ccCCC-CCcCCCCCCC---CCCCCCHHHHHHHH
Confidence 45565 9999998864 67899888776554
No 17
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=25.11 E-value=31 Score=24.61 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCC
Q psy2829 67 SPGDALRRVFEAVASGLLLESGPGL 91 (176)
Q Consensus 67 s~g~AfRRvlE~lAsGilLpgs~GL 91 (176)
.--+.+.+++++|+.+.|+|.+|-+
T Consensus 51 ~~~~~~~~fy~~l~~~~f~patP~l 75 (83)
T PF00317_consen 51 DRMEWAEEFYDLLSNQKFIPATPTL 75 (83)
T ss_dssp THHHHHHHHHHHHHTTSEEE-HHHH
T ss_pred CHHHHHHHHHHHHHcCCeecCCHHH
Confidence 5678889999999999999997644
No 18
>PF09193 CholecysA-Rec_N: Cholecystokinin A receptor, N-terminal; InterPro: IPR015276 This entry represents the extracellular N-terminal domain of the cholecystokinin A receptor. This domain adopts a tertiary structure consisting of a few helical turns and a disulphide-cross linked loop. It is required for interaction of the cholecystokinin A receptor with its corresponding hormonal ligand []. ; PDB: 1D6G_A.
Probab=24.89 E-value=38 Score=23.19 Aligned_cols=15 Identities=40% Similarity=0.778 Sum_probs=7.4
Q ss_pred ccCCCCCCCCCCcCC
Q psy2829 84 LLESGPGLLDPCEKE 98 (176)
Q Consensus 84 lLpgs~GL~DPCEk~ 98 (176)
||-.|..|..|||-+
T Consensus 7 ll~NgsnIt~~Celg 21 (47)
T PF09193_consen 7 LLVNGSNITPPCELG 21 (47)
T ss_dssp TTTTT-SSS--B--S
T ss_pred HhcCCCCCCChhhcc
Confidence 555678999999964
No 19
>PLN02749 Uncharacterized protein At1g47420
Probab=24.46 E-value=2.2e+02 Score=24.16 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred hHHHhhcCCCCCch--hhHHHHHHHHh-hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----hccccCCC
Q psy2829 17 LATYAKAEPQQSCV--MIIRLLRHLGQ-AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVA-----SGLLLESG 88 (176)
Q Consensus 17 ~WFqara~~l~sc~--ivIRILRDlr~-~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lA-----sGilLpgs 88 (176)
|.|.+.++.++.|. -+...|+||-. .|..|++=.+ -.+++|++.+..--.=.+|+.-||.+-- +|+|..=-
T Consensus 3 R~fs~d~~~lP~i~Dp~i~~afkdLma~sW~elp~sv~-~~~kkalsk~tddkagqeaL~nvfrAAeAveeFgG~L~sLr 81 (173)
T PLN02749 3 RRFSEDVSHLPEISDPEILKAFKDLMAASWDELPDSVV-NDAKKALSKNTDDKAGQEALKNVFRAAEAVEEFGGTLVSLR 81 (173)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHhcchhhCChHHH-HHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666676676653 67788999988 9999987655 6799999998665555678877775443 25553322
Q ss_pred CCCCCCCcCCCcccccCCChhhhhhh
Q psy2829 89 PGLLDPCEKEPRDALANMPAQDREDV 114 (176)
Q Consensus 89 ~GL~DPCEk~~~dv~~~Lt~QQredI 114 (176)
--|-|-|--...+ ...|..+-.+.|
T Consensus 82 meidDl~GlsGEn-v~PLPd~~~~Al 106 (173)
T PLN02749 82 MEIDDLIGLSGEN-VKPLPDYIENAL 106 (173)
T ss_pred HHHHHhcCCCCCC-CCCCcHHHHHHH
Confidence 2234444332222 245666655555
No 20
>PRK09897 hypothetical protein; Provisional
Probab=23.16 E-value=1.6e+02 Score=28.37 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=38.6
Q ss_pred chhhHHHHHHHHh-hccCCChhHHHHH-H--HHHHHhCCCCCCHHHHHHHHHHHHhhcccc
Q psy2829 29 CVMIIRLLRHLGQ-AWNLINPWALELL-V--EKVIASAGLPLSPGDALRRVFEAVASGLLL 85 (176)
Q Consensus 29 c~ivIRILRDlr~-~w~~Ls~W~lELL-v--~kai~sa~~pLs~g~AfRRvlE~lAsGilL 85 (176)
...+|--|+.--+ -|..|+.==.+-+ - .+.++.+..++++..| +|+++++++|.|-
T Consensus 349 w~~~i~~l~~~~~~iw~~l~~~d~~rf~~~l~~~~~~~~~~mP~~sa-~~l~~l~~aG~L~ 408 (534)
T PRK09897 349 WRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESI-RRLLALREAGIIH 408 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhhHHHHHhccCCChHHH-HHHHHHHHcCCEE
Confidence 4556666665555 8888876533332 2 2567778889977555 9999999999874
No 21
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=22.29 E-value=1.4e+02 Score=25.79 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=25.4
Q ss_pred hccCC-ChhHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH
Q psy2829 42 AWNLI-NPWALELLVEKVIASAGLPL-----SPGDALRRVFEA 78 (176)
Q Consensus 42 ~w~~L-s~W~lELLv~kai~sa~~pL-----s~g~AfRRvlE~ 78 (176)
.|.|+ +.|.++|+.+-+-..++++. ++++.+.=-+.|
T Consensus 101 AWap~i~~Wsl~Llgelssk~~~R~~~~~~~~~~e~l~~Wmsc 143 (213)
T PF14837_consen 101 AWAPLISAWSLELLGELSSKYAGRRGVPHSSSLNELLQLWMSC 143 (213)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCcccccccHHHHHHHHHhc
Confidence 68764 78999999998777765443 666655544433
No 22
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=21.74 E-value=1.1e+02 Score=24.39 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=42.5
Q ss_pred HHHHHHHHh---------hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh---cc------------ccCCC
Q psy2829 33 IRLLRHLGQ---------AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAS---GL------------LLESG 88 (176)
Q Consensus 33 IRILRDlr~---------~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAs---Gi------------lLpgs 88 (176)
||+||-+.. --+.+|++..|||+.+- -.|+-+++..|. |. -...-
T Consensus 3 VrLLK~FlK~igvYGse~~~~GFSGYL~ELLii~y-----------GsF~~~l~~a~~W~~~~~Id~~~~~~~~~~f~~P 71 (114)
T PF09249_consen 3 VRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHY-----------GSFENVLEAAAKWKPPVVIDLEDHGEPSKKFDDP 71 (114)
T ss_dssp HHHHHHHHHHTT-B-SSTTT-SB-HHHHHHHHHHH-----------SSHHHHHHHHTT--TTEEEETT-TTE--EEE-SS
T ss_pred hHHHHHHHhcCCCcchhhhcCcchHHHHHHHHHHH-----------CCHHHHHHHHHhcCCCeEEccCccchhhhhcCCC
Confidence 688888876 23788999999998752 234455554442 11 01122
Q ss_pred CCCCCCCcCCCcccccCCChhhhhhh
Q psy2829 89 PGLLDPCEKEPRDALANMPAQDREDV 114 (176)
Q Consensus 89 ~GL~DPCEk~~~dv~~~Lt~QQredI 114 (176)
--+.||..+ +.+|.+.+|.+..-..
T Consensus 72 lvviDPvDp-~RNVAAalS~~~~~~f 96 (114)
T PF09249_consen 72 LVVIDPVDP-NRNVAAALSLENLAEF 96 (114)
T ss_dssp -EEEETTEE-EEETTTTS-HHHHHHH
T ss_pred eEEcCCCCC-CchHhHhcCHHHHHHH
Confidence 236788887 6889999998876544
No 23
>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]
Probab=21.52 E-value=1.9e+02 Score=22.61 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=23.8
Q ss_pred hhHHHHHHHHh--hccCCChhHHHHHHHHHHHh
Q psy2829 31 MIIRLLRHLGQ--AWNLINPWALELLVEKVIAS 61 (176)
Q Consensus 31 ivIRILRDlr~--~w~~Ls~W~lELLv~kai~s 61 (176)
+++|+++.+.+ +=+.+..|..-...+.+|+-
T Consensus 49 ~~lr~~~~~~~~~~~~~~~~wl~~Ia~n~~iD~ 81 (182)
T COG1595 49 TFLRAWRAIDSFRGRSSFKAWLYRIARNLAIDR 81 (182)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH
Confidence 56777777765 55788899998888888866
Done!