Query psy2829
Match_columns 176
No_of_seqs 111 out of 137
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 17:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4at7_B NF90, interleukin enhan 100.0 5.8E-47 2E-51 339.4 9.4 119 8-128 209-344 (383)
2 4at7_A Interleukin enhancer-bi 100.0 1.9E-46 6.6E-51 334.2 10.4 117 8-128 176-312 (364)
3 1px5_A 2'-5'-oligoadenylate sy 99.1 6.7E-11 2.3E-15 101.8 6.1 94 17-115 195-320 (349)
4 1r89_A TRNA nucleotidyltransfe 77.7 2.1 7.1E-05 39.0 4.3 87 12-115 132-239 (437)
5 4fh3_A Poly(A) RNA polymerase 66.4 55 0.0019 27.1 10.8 63 19-81 147-253 (349)
6 3g1g_A GAG polyprotein, capsid 57.1 14 0.00048 27.1 4.3 54 29-82 15-79 (87)
7 1q79_A Poly(A) polymerase alph 55.8 63 0.0022 29.6 9.4 55 26-81 217-278 (514)
8 3g21_A GAG polyprotein, capsid 52.3 9.5 0.00032 27.4 2.6 49 29-77 16-75 (77)
9 2hhp_A Poly(A) polymerase; tem 45.2 38 0.0013 31.2 6.2 61 20-81 198-265 (530)
10 3nyb_A Poly(A) RNA polymerase 41.1 48 0.0016 28.0 5.8 64 17-80 148-226 (323)
11 4dh4_A MIF; trimer, isomerase; 39.1 12 0.0004 26.6 1.4 41 84-126 48-94 (114)
12 3a4c_A DNA replication factor 35.0 37 0.0013 25.6 3.6 45 28-73 14-58 (106)
13 4e8f_A Poly(A) RNA polymerase 31.4 1.6E+02 0.0055 25.7 7.7 105 18-123 174-364 (405)
14 3b64_A Macrophage migration in 25.7 30 0.001 24.2 1.7 43 82-126 46-94 (112)
15 3djh_A Macrophage migration in 24.2 32 0.0011 24.4 1.6 38 90-127 51-94 (114)
16 2ikf_A RNA uridylyl transferas 23.6 1.1E+02 0.0039 25.8 5.2 66 17-82 169-271 (353)
17 1hfo_A Migration inhibitory fa 21.5 36 0.0012 23.7 1.4 43 82-126 45-93 (113)
18 2os5_A Acemif; macrophage migr 20.4 48 0.0017 23.4 1.9 42 83-126 47-94 (119)
No 1
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=100.00 E-value=5.8e-47 Score=339.38 Aligned_cols=119 Identities=45% Similarity=0.795 Sum_probs=114.8
Q ss_pred ccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhccc
Q psy2829 8 HFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLL 84 (176)
Q Consensus 8 ~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGil 84 (176)
..++||+ +|||+||++++||+||||||||||+ +|++|++|+||||+||||+++++||++|+||||||||||+|+|
T Consensus 209 LAalRhA--kWFqara~~l~s~~ilIRilkdlc~R~~~~~pL~~waLELL~~~ai~s~~~~l~~~~afRRVLEllasG~l 286 (383)
T 4at7_B 209 LASLRHA--KWFQARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLECLASGIV 286 (383)
T ss_dssp HHHHHHH--HHCCCCCTTSTTHHHHHHHHHHHHHHCGGGGGGTTHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTTT
T ss_pred HHHhhhh--HHHHHhcccCCCceEEeehhhHHHHhcCCcCCCcHhHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCcc
Confidence 4678999 9999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829 85 LESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK 128 (176)
Q Consensus 85 Lpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~ 128 (176)
|||+|||.||||++++|+++.||.||||+|| ||||||||++|++
T Consensus 287 Lp~~pgI~DPcEk~pt~~~~~lt~qq~e~it~sAQ~~LR~~afgq~~kVLGme~l~~~ 344 (383)
T 4at7_B 287 MPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMDPLPSK 344 (383)
T ss_dssp STTSCCCBCTTCSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHTTCCCCC--
T ss_pred cCCCCCccCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhhCCcceeccCCCChhh
Confidence 9999999999999999999999999999999 9999999999976
No 2
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=100.00 E-value=1.9e-46 Score=334.23 Aligned_cols=117 Identities=30% Similarity=0.436 Sum_probs=111.1
Q ss_pred ccccCCccchHHHhhcCCCCCch-hhHHHHHHHHh---hccCCChhHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhh
Q psy2829 8 HFGRPHLLPLATYAKAEPQQSCV-MIIRLLRHLGQ---AWNLINPWALELLVEKVIAS--AGLPLSPGDALRRVFEAVAS 81 (176)
Q Consensus 8 ~f~~~h~~~~WFqara~~l~sc~-ivIRILRDlr~---~w~~Ls~W~lELLv~kai~s--a~~pLs~g~AfRRvlE~lAs 81 (176)
..++||+ +|||+||+ +||+ ++||||||||+ +|++|++|+||||+|||+++ +++||++|+|||||||||||
T Consensus 176 LaalRhA--kWfq~na~--~s~v~~lIRIlkDlc~R~~~w~pL~~waLELL~~~Ai~s~~~~~~l~~~~afRRVLElLAs 251 (364)
T 4at7_A 176 LAAIRHA--RWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA 251 (364)
T ss_dssp HHHHHHH--HHHHHHCC--CHHHHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHHHHSSTTSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhhhh--HHHHhhcc--ccccceeehhhHHHHHhcCCcCCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHh
Confidence 5689999 99999997 4555 79999999999 99999999999999999999 68899999999999999999
Q ss_pred ccccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829 82 GLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK 128 (176)
Q Consensus 82 GilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~ 128 (176)
|||||||+||.||||++++|||+.||+||||+|| ||||||||+++++
T Consensus 252 Gillp~~~Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~LRllafgq~~kVLG~e~~~s~ 312 (364)
T 4at7_A 252 GLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASY 312 (364)
T ss_dssp TTTSTTBCCCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHHHTTCHHHHHTSSSCCGG
T ss_pred CcccCCCCCCcCCCCCCCcchhccCCHHHHHHHHHHHHHHHHHHHhcCcceecccCCCcch
Confidence 9999999999999999999999999999999999 9999999999873
No 3
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.11 E-value=6.7e-11 Score=101.78 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=77.7
Q ss_pred hHHHhhcCCCCCchhhHHHHHHHHh--h----ccCCChhHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhcc-----
Q psy2829 17 LATYAKAEPQQSCVMIIRLLRHLGQ--A----WNLINPWALELLVEKVIASA--GLPLSPGDALRRVFEAVASGL----- 83 (176)
Q Consensus 17 ~WFqara~~l~sc~ivIRILRDlr~--~----w~~Ls~W~lELLv~kai~sa--~~pLs~g~AfRRvlE~lAsGi----- 83 (176)
.|+.++ ....+-+||+||+.++ . -..+++|++|||+.++..+. .+..+..++||+|||+|+.+.
T Consensus 195 ~~v~~~---~~~~k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~~~i~ 271 (349)
T 1px5_A 195 DFLRNR---PTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQKLCIF 271 (349)
T ss_dssp HHHHSS---CHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGGCEEC
T ss_pred HHHHhC---cHHHHHHHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCcccee
Confidence 666544 2456789999999998 2 46899999999999999884 456788999999999999983
Q ss_pred --------------cc-----CCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829 84 --------------LL-----ESGPGLLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 84 --------------lL-----pgs~GL~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
|| .++|+|.|||++.+ +|++. |.++++.++
T Consensus 272 w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~-NVa~~-~~~~~~~~~ 320 (349)
T 1px5_A 272 WEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTG-NVGGG-DTHSWQRLA 320 (349)
T ss_dssp CCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTC-BTTCS-CHHHHHHHH
T ss_pred eeccccccchhHHhhhhhhhcCCCCeeeCCCCCCC-cccCC-chhhHHHHH
Confidence 33 36789999999855 79888 999999998
No 4
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=77.73 E-value=2.1 Score=38.96 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=65.1
Q ss_pred CCccchHHHhhcCCCCCchhhHHHHHHHHhhcc---------CCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-
Q psy2829 12 PHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWN---------LINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAS- 81 (176)
Q Consensus 12 ~h~~~~WFqara~~l~sc~ivIRILRDlr~~w~---------~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAs- 81 (176)
.|. .|...|.++ -.-.||+||-+.++|. .+++.++|||+-+- -.|+-+|+.++.
T Consensus 132 ~H~--~fv~~r~~~---~~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y-----------G~f~~vl~~~~~w 195 (437)
T 1r89_A 132 FHH--KWLEGRIKG---KENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY-----------GSFLETVKNARRW 195 (437)
T ss_dssp HHH--HHHTTTSTT---CHHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH-----------SSHHHHHHHHTTC
T ss_pred HHH--HHHHhhhhh---hhhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH-----------cCHHHHHHHHHHh
Confidence 588 888888775 4578999999988544 37999999999981 167788887753
Q ss_pred --cccc--------CCCCC-CCCCCcCCCcccccCCChhhhhhhh
Q psy2829 82 --GLLL--------ESGPG-LLDPCEKEPRDALANMPAQDREDVT 115 (176)
Q Consensus 82 --GilL--------pgs~G-L~DPCEk~~~dv~~~Lt~QQredIT 115 (176)
++.. =.+|- |.||..+ ..+|.+.+|.+....+-
T Consensus 196 ~~~~~Id~~~~~~~~~~PlvViDPvDp-~rNVAa~~s~~~~~~~~ 239 (437)
T 1r89_A 196 TRRTVIDVAKGEVRKGEEFFVVDPVDE-KRNVAANLSLDNLARFV 239 (437)
T ss_dssp CTTEEEEGGGTEEEECSSCEEEETTEE-EEETTTTCCHHHHHHHH
T ss_pred CCCeEEecCCCcccCCCCEEEECCCCC-CCchhhcCCHHHHHHHH
Confidence 1110 04566 8999876 67899999999998886
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=66.45 E-value=55 Score=27.15 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred HHhhcCCCCCchhhHHHHHHHHh-------hccCCChhHHHHHHHHHHHhCCC---------------------------
Q psy2829 19 TYAKAEPQQSCVMIIRLLRHLGQ-------AWNLINPWALELLVEKVIASAGL--------------------------- 64 (176)
Q Consensus 19 Fqara~~l~sc~ivIRILRDlr~-------~w~~Ls~W~lELLv~kai~sa~~--------------------------- 64 (176)
.++-+......+.+++++|-..+ .-+.|+++++.+||-+-+.....
T Consensus 147 l~~~~~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~ 226 (349)
T 4fh3_A 147 LSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDD 226 (349)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCC
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCccccccc
Confidence 33334445678899999998876 24679999999999877753211
Q ss_pred ----------CCCHHHHHHHHHHHHhh
Q psy2829 65 ----------PLSPGDALRRVFEAVAS 81 (176)
Q Consensus 65 ----------pLs~g~AfRRvlE~lAs 81 (176)
..++|+.|..+|+.-|.
T Consensus 227 ~~~~~~~~~n~~slg~LL~~FF~~Y~~ 253 (349)
T 4fh3_A 227 KLEDIPPSQNYSSLGSLLHGFFRFYAY 253 (349)
T ss_dssp CGGGSCCCSCCCCHHHHHHHHHHHHHH
T ss_pred chhhcccccCcccHHHHHHHHHHHhhh
Confidence 14689999999999885
No 6
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=57.10 E-value=14 Score=27.10 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=36.9
Q ss_pred chhhHHHHHHHHh--hccCCChhHHH-HHHHHH-------HHhCCCCCCH-HHHHHHHHHHHhhc
Q psy2829 29 CVMIIRLLRHLGQ--AWNLINPWALE-LLVEKV-------IASAGLPLSP-GDALRRVFEAVASG 82 (176)
Q Consensus 29 c~ivIRILRDlr~--~w~~Ls~W~lE-LLv~ka-------i~sa~~pLs~-g~AfRRvlE~lAsG 82 (176)
.-.|-|+++.++. +=+.-..|+++ |++++| +...+.-++. ++..|+||.-.-+.
T Consensus 15 ~dfVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~~~~ 79 (87)
T 3g1g_A 15 VDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTA 79 (87)
T ss_dssp HHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHHhhcC
Confidence 4568899999988 33355789887 555543 4445666665 99999999765443
No 7
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=55.79 E-value=63 Score=29.61 Aligned_cols=55 Identities=7% Similarity=0.141 Sum_probs=43.7
Q ss_pred CCCchhhHHHHHHHHh-------hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q psy2829 26 QQSCVMIIRLLRHLGQ-------AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAS 81 (176)
Q Consensus 26 l~sc~ivIRILRDlr~-------~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAs 81 (176)
....+.++|++|-..+ -.+.|++..+.+||-+...-.+ ..++++-++++|+..+.
T Consensus 217 ~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P-~~s~~~LL~~FF~~y~~ 278 (514)
T 1q79_A 217 IDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYP-NAIASTLVHKFFLVFSK 278 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhc
Confidence 3456678899988866 3678999999999888876543 46899999999999994
No 8
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=52.26 E-value=9.5 Score=27.39 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=33.2
Q ss_pred chhhHHHHHHHHh--hccCCChhHHH-HHHHHH-------HHhCCCCCCH-HHHHHHHHH
Q psy2829 29 CVMIIRLLRHLGQ--AWNLINPWALE-LLVEKV-------IASAGLPLSP-GDALRRVFE 77 (176)
Q Consensus 29 c~ivIRILRDlr~--~w~~Ls~W~lE-LLv~ka-------i~sa~~pLs~-g~AfRRvlE 77 (176)
.-.|-|+++.++. +=+.-..|+++ |++++| +...+.-++. ++..|+||.
T Consensus 16 ~dfVdRl~kal~~e~~~~~vk~~m~~tLl~QNANpdCk~ilk~l~~~~~~~~e~ik~~~~ 75 (77)
T 3g21_A 16 VDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLD 75 (77)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSCHHHHHHHTTSCTTCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCCHHHHHHHHHc
Confidence 3467899999986 22244689877 666654 3334555555 999999973
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=45.20 E-value=38 Score=31.15 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=46.7
Q ss_pred HhhcCCCCCchhhHHHHHHHHh-------hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q psy2829 20 YAKAEPQQSCVMIIRLLRHLGQ-------AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAS 81 (176)
Q Consensus 20 qara~~l~sc~ivIRILRDlr~-------~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAs 81 (176)
.+........+.++|++|-..+ -.+-|++..+.+||-+.+.-.+ .+++++-++++|+..|.
T Consensus 198 ~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P-~~s~~~LL~~FF~~y~~ 265 (530)
T 2hhp_A 198 LELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYP-NACSAVILNRFFIILSE 265 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc
Confidence 3334444566788889888765 3678889999999988877643 47899999999999994
No 10
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=41.11 E-value=48 Score=27.99 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=49.7
Q ss_pred hHHHhhcCCCCCchhhHHHHHHHHh-------hccCCChhHHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHh
Q psy2829 17 LATYAKAEPQQSCVMIIRLLRHLGQ-------AWNLINPWALELLVEKVIASAGL--------PLSPGDALRRVFEAVA 80 (176)
Q Consensus 17 ~WFqara~~l~sc~ivIRILRDlr~-------~w~~Ls~W~lELLv~kai~sa~~--------pLs~g~AfRRvlE~lA 80 (176)
.++.+-+...+..+.+++++|-... .-+.|+++.+.+||-+.+...+. ..++|+.|..+|+.-+
T Consensus 148 ~li~~~~~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~ 226 (323)
T 3nyb_A 148 KLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYG 226 (323)
T ss_dssp HHHHHHHHSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhc
Confidence 4445555556788999999999866 34789999999999887776321 2568999999999999
No 11
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=39.08 E-value=12 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=33.5
Q ss_pred ccCCCCCCCCCCcCCCcccccCCChhhhhhhh------hHhhhCCCCcc
Q psy2829 84 LLESGPGLLDPCEKEPRDALANMPAQDREDVT------IHKLLGMEQLK 126 (176)
Q Consensus 84 lLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT------ihkVLGme~lp 126 (176)
+.-| |=.|||---.+.+.+.++.+|...++ +.++||+.+.-
T Consensus 48 m~fg--Gs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~r 94 (114)
T 4dh4_A 48 MRFG--GSSDPCAFIRVASIGGITSSTNCKIAAALSAACERHLGVPKNR 94 (114)
T ss_dssp CCBT--TBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred EEEC--CcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3445 44599998888999999999998886 99999998754
No 12
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=34.99 E-value=37 Score=25.59 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=33.4
Q ss_pred CchhhHHHHHHHHhhccCCChhHHHHHHHHHHHhCCCCCCHHHHHH
Q psy2829 28 SCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALR 73 (176)
Q Consensus 28 sc~ivIRILRDlr~~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfR 73 (176)
.-.=+.||||-+-.+ +.=+.-.+|.+|++.+.|.+..|++++.=.
T Consensus 14 rLPelArilR~vFva-EkK~vl~~e~~~~ki~~Syr~~ls~~EmE~ 58 (106)
T 3a4c_A 14 RLPELARVLRNVFVS-ERKPALTMEVVCARMVDSCQTALSPGEMEK 58 (106)
T ss_dssp HHHHHHHHHHHHHHT-CSSSEEEHHHHHHHHHHTSCCSCCHHHHHH
T ss_pred hhHHHHHHHHHHHHh-cccCCccHHHHHHHHHhhhhccCCHHHHHH
Confidence 334577888877661 123345799999999999999999998743
No 13
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=31.40 E-value=1.6e+02 Score=25.71 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHhhcCCCCCchhhHHHHHHHHh-------hccCCChhHHHHHHHHHH-HhCC--------------------------
Q psy2829 18 ATYAKAEPQQSCVMIIRLLRHLGQ-------AWNLINPWALELLVEKVI-ASAG-------------------------- 63 (176)
Q Consensus 18 WFqara~~l~sc~ivIRILRDlr~-------~w~~Ls~W~lELLv~kai-~sa~-------------------------- 63 (176)
++.+-+......+.+++++|-... --+.|+++++.|||-+-+ ....
T Consensus 174 ll~~y~~~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~ 253 (405)
T 4e8f_A 174 LLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFD 253 (405)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCC
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccc
Confidence 333333334678899999998876 246799999999998888 3211
Q ss_pred ----------CCCCHHHHHHHHHHHHh--------------hccccCC-----------------------CCCCCCCCc
Q psy2829 64 ----------LPLSPGDALRRVFEAVA--------------SGLLLES-----------------------GPGLLDPCE 96 (176)
Q Consensus 64 ----------~pLs~g~AfRRvlE~lA--------------sGilLpg-----------------------s~GL~DPCE 96 (176)
...++|+-|..+|+.-+ .|-+++. ---|.||-+
T Consensus 254 ~~l~~~~~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIsir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~ 333 (405)
T 4e8f_A 254 DKLEDIPPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE 333 (405)
T ss_dssp CCGGGSCCCSCCCCHHHHHHHHHHHHHHTCCTTTBEECSSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSS
T ss_pred cchhhhccccccccHHHHHHHHHHHHhcccCCCCcEEEEecCCcccccccccccccccccccccccccCCceEEEECCCC
Confidence 13579999999999998 2322210 112668888
Q ss_pred CCCcccccCCChhhhhhhh-----hHhhhCCC
Q psy2829 97 KEPRDALANMPAQDREDVT-----IHKLLGME 123 (176)
Q Consensus 97 k~~~dv~~~Lt~QQredIT-----ihkVLGme 123 (176)
. ..++...+|......|- -+.+|.-.
T Consensus 334 ~-~~Nv~r~vs~~~~~~I~~eF~rA~~iL~~~ 364 (405)
T 4e8f_A 334 I-SHNVGRTVSSSGLYRIRGEFMAASRLLNSR 364 (405)
T ss_dssp T-TCBTTTTCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred c-ccccccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 6 56788888877666664 55555544
No 14
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=25.65 E-value=30 Score=24.19 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=33.5
Q ss_pred ccccCCCCCCCCCCcCCCcccccCCChhhhhhhh------hHhhhCCCCcc
Q psy2829 82 GLLLESGPGLLDPCEKEPRDALANMPAQDREDVT------IHKLLGMEQLK 126 (176)
Q Consensus 82 GilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT------ihkVLGme~lp 126 (176)
+-+..| |-.|||---.+......|.+|...+. +.+.||+.+.-
T Consensus 46 ~~~~~~--G~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (112)
T 3b64_A 46 TPMHFF--GSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADR 94 (112)
T ss_dssp CCCCBT--TBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ceEEEC--CCCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 445555 45599987777777789999998886 99999998754
No 15
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=24.17 E-value=32 Score=24.37 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=31.5
Q ss_pred CCCCCCcCCCcccccCCChhhhhhhh------hHhhhCCCCccc
Q psy2829 90 GLLDPCEKEPRDALANMPAQDREDVT------IHKLLGMEQLKL 127 (176)
Q Consensus 90 GL~DPCEk~~~dv~~~Lt~QQredIT------ihkVLGme~lp~ 127 (176)
|=.|||---.+.+.+.++.+|...++ +.+.||+.+.--
T Consensus 51 Gs~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~ri 94 (114)
T 3djh_A 51 GSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRV 94 (114)
T ss_dssp TBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred CcCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceE
Confidence 33499998888899999999988886 999999987543
No 16
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=23.61 E-value=1.1e+02 Score=25.77 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=48.0
Q ss_pred hHHHhhcCCCCCchhhHHHHHHHHh-------hc-cCCChhHHHHHHHHHHHhCC-------------------------
Q psy2829 17 LATYAKAEPQQSCVMIIRLLRHLGQ-------AW-NLINPWALELLVEKVIASAG------------------------- 63 (176)
Q Consensus 17 ~WFqara~~l~sc~ivIRILRDlr~-------~w-~~Ls~W~lELLv~kai~sa~------------------------- 63 (176)
.++++-+...+..+.+++++|-..+ .- +.|+++++.+||-+.+...+
T Consensus 169 ~ll~~~~~~~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~ 248 (353)
T 2ikf_A 169 ALLRAYFEQNPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLE 248 (353)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccc
Confidence 3344444445678899999998876 23 67999999999988885421
Q ss_pred ----CCCCHHHHHHHHHHHHhhc
Q psy2829 64 ----LPLSPGDALRRVFEAVASG 82 (176)
Q Consensus 64 ----~pLs~g~AfRRvlE~lAsG 82 (176)
...++|+.|..+|+.-+.-
T Consensus 249 ~~~~~~~slg~LL~~Ff~~Y~~~ 271 (353)
T 2ikf_A 249 EPADEGLELGTQVLDFLHFFLHE 271 (353)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred cCCCCcccHHHHHHHHHHHhccc
Confidence 1235689999999999953
No 17
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.49 E-value=36 Score=23.69 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=32.8
Q ss_pred ccccCCCCCCCCCCcCCCcccccCCChhhhhhhh------hHhhhCCCCcc
Q psy2829 82 GLLLESGPGLLDPCEKEPRDALANMPAQDREDVT------IHKLLGMEQLK 126 (176)
Q Consensus 82 GilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT------ihkVLGme~lp 126 (176)
+-+..|+. .|||---.+.+...+|.+|+..+. +.+.||+.+.-
T Consensus 45 ~~~~~~g~--~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 93 (113)
T 1hfo_A 45 QQLSFGGS--TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNR 93 (113)
T ss_dssp CEEEETTB--CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ccEEecCC--CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCe
Confidence 34444533 499987777778889999998886 99999998753
No 18
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=20.45 E-value=48 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=32.2
Q ss_pred cccCCCCCCCCCCcCCCcccccCCChhhhhhhh------hHhhhCCCCcc
Q psy2829 83 LLLESGPGLLDPCEKEPRDALANMPAQDREDVT------IHKLLGMEQLK 126 (176)
Q Consensus 83 ilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT------ihkVLGme~lp 126 (176)
-+..| |=.|||---.+.+....|.+|+..+. +.+.||+.+.-
T Consensus 47 ~~~~~--g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~ 94 (119)
T 2os5_A 47 RITHG--ASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDK 94 (119)
T ss_dssp CCCBT--TBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred cEEEc--CCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCccc
Confidence 34445 33499987777778889999998886 99999998754
Done!