RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2829
         (176 letters)



>gnl|CDD|128842 smart00572, DZF, domain in DSRM or ZnF_C2H2 domain containing
           proteins. 
          Length = 246

 Score =  124 bits (313), Expect = 1e-35
 Identities = 62/122 (50%), Positives = 74/122 (60%), Gaps = 17/122 (13%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCV++IR+LR L      W  ++ W LELLVEK I SA  PL  GDA RRVFE
Sbjct: 122 ARASGLQSCVIVIRVLRDLCNRVPTWQPLSGWPLELLVEKAIGSARQPLGLGDAFRRVFE 181

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            +ASG+LL   PGL DPCEK+  DAL  +  Q REDVT              IHK+LGM+
Sbjct: 182 CLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFGQIHKILGMD 241

Query: 124 QL 125
            L
Sbjct: 242 PL 243


>gnl|CDD|219454 pfam07528, DZF, DZF domain.  The function of this domain is
           unknown. It is often found associated with pfam00098 or
           pfam00035. This domain has been predicted to belong to
           the nucleotidyltransferase superfamily.
          Length = 248

 Score = 78.0 bits (192), Expect = 5e-18
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIAS--AGLPLSPGDALRRV 75
             A   +S  ++IR+L+ L +    +  ++ W L+LL  K I +  +   L  G+A RRV
Sbjct: 122 ENAHHLKSIKVLIRVLKDLCRRFDTFGPLSGWPLDLLAHKAIMNNPSRQALPAGEAFRRV 181

Query: 76  FEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLG 121
           FE +ASG+ L    G+ DPCEK       ++  Q ++D                   +LG
Sbjct: 182 FELLASGIFLPGSAGITDPCEKGHTRVHTHLTLQQQDDCCMTAQTLLRVLAHGGYKHILG 241

Query: 122 MEQL 125
           M+  
Sbjct: 242 MDGN 245


>gnl|CDD|179895 PRK04930, PRK04930, glutathione-regulated potassium-efflux system
           ancillary protein KefG; Provisional.
          Length = 184

 Score = 27.7 bits (62), Expect = 2.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)

Query: 98  EPRDALANM----PAQDREDVTIHKL 119
           E +D++AN     PAQ  E VT+H L
Sbjct: 16  ESQDSVANRVLLKPAQQLEHVTVHDL 41


>gnl|CDD|239582 cd03505, Delta9-FADS-like, The Delta9 Fatty Acid Desaturase
           (Delta9-FADS)-like CD includes the delta-9 and delta-11
           acyl CoA desaturases found in various eukaryotes
           including vertebrates, insects, higher plants, and
           fungi. The delta-9 acyl-lipid desaturases are found in a
           wide range of bacteria. These enzymes play essential
           roles in fatty acid metabolism and the regulation of
           cell membrane fluidity. Acyl-CoA desaturases are the
           enzymes involved in the CoA-bound desaturation of fatty
           acids. Mammalian stearoyl-CoA delta-9 desaturase is a
           key enzyme in the biosynthesis of monounsaturated fatty
           acids, and in yeast, the delta-9 acyl-CoA desaturase
           (OLE1) reaction accounts for all de nova unsaturated
           fatty acid production in Saccharomyces cerevisiae. These
           non-heme, iron-containing, ER membrane-bound enzymes are
           part of a three-component enzyme system involving
           cytochrome b5, cytochrome b5 reductase, and the delta-9
           fatty acid desaturase. This complex catalyzes the NADH-
           and oxygen-dependent insertion of a cis double bond
           between carbons 9 and 10 of the saturated fatty acyl
           substrates, palmitoyl (16:0)-CoA or stearoyl (18:0)-CoA,
           yielding the monoenoic products palmitoleic (16:l) or
           oleic (18:l) acids, respectively. In cyanobacteria, the
           biosynthesis of unsaturated fatty acids is initiated by
           delta 9 acyl-lipid desaturase (DesC) which introduces
           the first double bond at the delta-9 position of a
           saturated fatty acid that has been esterified to a
           glycerolipid. This domain family has extensive
           hydrophobic regions that would be capable of spanning
           the membrane bilayer at least twice. Comparison of
           sequences also reveals the existence of three regions of
           conserved histidine cluster motifs that contain the
           residues: HXXXXH, HXXHH, and H/QXXHH. These histidine
           residues are reported to be catalytically essential and
           proposed to be the ligands for the iron atoms contained
           within the rat stearoyl CoA delta-9 desaturase. Some
           eukaryotic (Fungi, Euglenozoa, Mycetozoa, Rhodophyta)
           desaturase domains have an adjacent C-terminal
           cytochrome b5-like domain.
          Length = 178

 Score = 27.5 bits (62), Expect = 3.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 31  MIIRLLRHLGQAWNL 45
            +IRLL  LG AW+L
Sbjct: 163 WVIRLLEKLGLAWDL 177


>gnl|CDD|237338 PRK13298, PRK13298, tRNA CCA-pyrophosphorylase; Provisional.
          Length = 417

 Score = 27.4 bits (61), Expect = 4.4
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 100 RDALANMPAQDREDVTIHKLLGMEQLKLKRGF 131
           RD+L N+P +D++ V +    G  ++ L   F
Sbjct: 11  RDSLLNLPVKDKDWVVVG---GTPKILLSINF 39


>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
          catalytic domain.  The protein architecture and deduced
          catalytic mechanism of PP2C phosphatases are similar to
          the PP1, PP2A, PP2B family of protein Ser/Thr
          phosphatases, with which PP2C shares no sequence
          similarity.
          Length = 252

 Score = 26.2 bits (58), Expect = 9.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 51 LELLVEKVIASAGLPLSPGDALRRVFEAVASGLL 84
           E+L E++I          +ALR+ F +    +L
Sbjct: 60 PEILAEELIKEKDELEDVEEALRKAFLSTDEEIL 93


>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain.  This domain is
          found at the N-terminus of a variety of plant
          O-methyltransferases. It has been shown to mediate
          dimerisation of these proteins.
          Length = 50

 Score = 24.5 bits (54), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 49 WALELLVEKVIASAGLPLSPGD 70
           A+EL +  +IA  G PLSP +
Sbjct: 5  CAIELGIPDIIAKHGKPLSPSE 26


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,151,748
Number of extensions: 874397
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 24
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.4 bits)