RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2829
(176 letters)
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76,
NFAR, ILF3, ILF2, template-free nucleotidyltransferase
fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B*
4at9_B* 4atb_B*
Length = 383
Score = 125 bits (315), Expect = 3e-35
Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
A+A +SCV++IR+LR L W + W LELL EK I +A P+ G+ALRRV E
Sbjct: 220 ARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLE 279
Query: 78 AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
+ASG+++ G G+ DPCEKE DA+ ++ Q RED+T +HK+LGM+
Sbjct: 280 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD 339
Query: 124 QLKLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEES 165
L K K EE+
Sbjct: 340 PLPSKMPKKPKNENPVDYTVQIPPSTTYAITPMKRPMEEDGE 381
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR,
ILF3, ILF2, template-free nucleotidyltransferase fold;
HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A*
4atb_A*
Length = 364
Score = 115 bits (288), Expect = 2e-31
Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 26/181 (14%)
Query: 20 YAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVI--ASAGLPLSPGDALRR 74
+ + Q + ++IRLL+ L + + PW L+LL + PL+ A RR
Sbjct: 185 FEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRR 244
Query: 75 VFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLL 120
+ +A+GL L G+ DPCE M + ++ V K+L
Sbjct: 245 CLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKIL 304
Query: 121 GMEQL-----KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESAAIKTETMET 175
G E + G ++ + +KE G ++++ EE + E+MET
Sbjct: 305 GQEGDASYLASEISTWDGVIVTPSEKAYEKPPEKKE--GEEEEENTEEPPQGEEEESMET 362
Query: 176 K 176
+
Sbjct: 363 Q 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.2
Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 61/147 (41%)
Query: 17 LATYAKAEPQQSCVM----IIRLLRHLGQAWNL----------------INPW------- 49
LA + A+ VM ++ ++ + G + INP
Sbjct: 1770 LA--SLAD-----VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 50 --ALELLVEKVIASAGLPL------SPGDALRRVFEAVASGLL--LESGPGLLDPCEKEP 99
AL+ +VE+V G + ++ VA+G L L++ +L+ K
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVEN---QQY---VAAGDLRALDTVTNVLNFI-KLQ 1875
Query: 100 RDALANMPAQDREDVTIHKLLGMEQLK 126
+ + + ++ +E+++
Sbjct: 1876 KIDIIELQ------KSLS----LEEVE 1892
Score = 27.7 bits (61), Expect = 2.6
Identities = 35/243 (14%), Positives = 62/243 (25%), Gaps = 103/243 (42%)
Query: 6 RFHFGRPHL-LPLATYAKAEPQ---QSCVMI-IR------LLRHLGQAWN---------- 44
R + P+ LP + + M+ I + ++ + N
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQVE 367
Query: 45 --LIN----------PWALELLV---EKVIASAG-------------------LPLS-P- 68
L+N P +L L K A +G LP++ P
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 69 -----GDALRRVFEAVASGLLLESGPGL----------LDPCEKE----PR--DALANMP 107
A + + + + + + D R D + +P
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Query: 108 ----AQDREDVTIH-------KLLGMEQL--KLKRGFG------GSRSANRKRRRDTSSG 148
+ T H G+ L + K G G G+ N D G
Sbjct: 488 VKWETTTQFKAT-HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN----PDDDYG 542
Query: 149 EKE 151
K+
Sbjct: 543 FKQ 545
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 135 RSANRKR--RRDTSSGEKEDGGVKKDKKEEEESAAIKTETME 174
R RKR D +S E +K KK+ EE ++E +E
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
>1zki_A Hypothetical protein PA5202; structural genomics, PSI, protein ST
initiative, midwest center for structural genomics,
MCSG, U function; 1.70A {Pseudomonas aeruginosa} SCOP:
d.38.1.5
Length = 133
Score = 27.3 bits (61), Expect = 1.7
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 101 DALANMPAQDREDVTIHKLLGMEQLKLKRGF 131
+ ++ MPA+++ +L+G++ + L G
Sbjct: 1 NGMSEMPAREQMISAYSELVGLDPVSLGDGV 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.3
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 18/58 (31%)
Query: 7 FHFGRPHLLPLATYAKAEPQQSCVMIIRL----------LRHLGQAWNLINPWALELL 54
H G HL E + + + +RH AWN L L
Sbjct: 475 SHIGH-HL------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS-ILNTL 524
>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus}
SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X*
1ezv_X* 3cxh_J*
Length = 127
Score = 26.8 bits (60), Expect = 2.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 84 LLESGPGLLDPCE 96
L ESG GL+ P +
Sbjct: 4 LQESGAGLVQPSQ 16
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex
(immunoglobulin/hydrolase), immunoglobulin V region,
signal, hydrolase, glycosidase, bacteriolytic enzyme,
egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB:
1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B
1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H
1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Length = 116
Score = 25.9 bits (58), Expect = 4.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 84 LLESGPGLLDPCE 96
L ESGPGL+ P +
Sbjct: 4 LQESGPGLVAPSQ 16
>4eag_A EG:132E8.2 protein; AMPK, transferase; HET: ATP TAM; 2.70A
{Drosophila melanogaster}
Length = 130
Score = 25.4 bits (55), Expect = 7.2
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 4 PKRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALE 52
++H G ++++P + + R ++ L W +INP+ +
Sbjct: 5 GAKWHLG--------IRSQSKPNDIMLEVYRAMKALSYEWKIINPYHVR 45
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized
form, structural genomics, PSI, protein structure
initiative; 2.80A {Archaeoglobus fulgidus} SCOP:
c.44.1.1
Length = 124
Score = 25.2 bits (56), Expect = 7.6
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 10/41 (24%)
Query: 35 LLRHLGQAWN----------LINPWALELLVEKVIASAGLP 65
L + ++W ++ LL E+ + + P
Sbjct: 19 LFNAMAKSWKAESAGVEKAERVDETVKRLLAERGLKAKEKP 59
>2v8q_A 5'-AMP-activated protein kinase catalytic subunit;
phosphorylation, nucleotide-binding,
serine/threonine-protei kinase, magnesium, CBS domain;
HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.129.6.2
PDB: 2v92_A* 2v9j_A* 2y94_C*
Length = 157
Score = 25.6 bits (55), Expect = 8.3
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 21 AKAEPQQSCVMIIRLLRHLGQAWNLINPWALE 52
+++ P + R ++ L W ++NP+ L
Sbjct: 11 SQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLR 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.385
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,678,028
Number of extensions: 158933
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 17
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.0 bits)