RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2829
         (176 letters)



>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable
          domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 116

 Score = 25.9 bits (56), Expect = 1.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 84 LLESGPGLLDP 94
          LLESGPGL+ P
Sbjct: 4  LLESGPGLVRP 14


>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable
          domain, VH {Mouse (Mus musculus), cluster 6 [TaxId:
          10090]}
          Length = 126

 Score = 25.9 bits (56), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 84 LLESGPGLLDPCE 96
          L ESGPG+L P +
Sbjct: 4  LKESGPGILQPSQ 16


>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
          domain, VH {Engineered (including hybrid species)}
          Length = 132

 Score = 25.9 bits (56), Expect = 1.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 84 LLESGPGLLDPCE 96
          L ESGP L+ P +
Sbjct: 4  LKESGPPLVKPTQ 16


>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable
          domain, VH {Mouse (Mus musculus), cluster 6 [TaxId:
          10090]}
          Length = 123

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 84 LLESGPGLLDP 94
          L ESGPG++ P
Sbjct: 4  LKESGPGIVQP 14


>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
          domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId:
          10090]}
          Length = 119

 Score = 25.5 bits (55), Expect = 2.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 84 LLESGPGLLDPCE 96
          L +SGPGL+ P +
Sbjct: 4  LQQSGPGLVKPSQ 16


>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable
          domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId:
          10090]}
          Length = 120

 Score = 25.5 bits (55), Expect = 2.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 84 LLESGPGLLDPCE 96
          L ESGP ++ P +
Sbjct: 4  LQESGPAVIKPSQ 16


>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain,
          VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
          Length = 116

 Score = 25.4 bits (55), Expect = 2.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 84 LLESGPGLLDPCE 96
          L ESGPGL+ P +
Sbjct: 4  LQESGPGLVAPSQ 16


>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable
          domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
          9606]}
          Length = 120

 Score = 25.5 bits (55), Expect = 2.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 84 LLESGPGLLDPCE 96
          L + G GLL P E
Sbjct: 4  LQQWGAGLLKPSE 16


>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable
          domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 117

 Score = 25.4 bits (55), Expect = 2.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 84 LLESGPGLLDP 94
          LLESGPGL+ P
Sbjct: 4  LLESGPGLVQP 14


>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain,
          VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
          Length = 124

 Score = 25.5 bits (55), Expect = 2.8
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 84 LLESGPGLLDP 94
          L+ESG G +  
Sbjct: 3  LVESGGGSVQA 13


>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable
          domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
          9606]}
          Length = 116

 Score = 25.1 bits (54), Expect = 3.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 84 LLESGPGLLDPCE 96
          L +SGPGL+ P +
Sbjct: 4  LEQSGPGLVRPSQ 16


>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
          domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
          10090]}
          Length = 118

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 84 LLESGPGLLDP 94
          LLESG GL+ P
Sbjct: 4  LLESGGGLVQP 14


>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable
          domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId:
          10090]}
          Length = 127

 Score = 25.0 bits (54), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 84 LLESGPGLLDPCE 96
          L ESG GL+ P +
Sbjct: 4  LQESGAGLVQPSQ 16


>d1zkia1 d.38.1.5 (A:4-129) Hypothetical protein PA5202 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 126

 Score = 24.6 bits (53), Expect = 4.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 106 MPAQDREDVTIHKLLGMEQLKLKRGF 131
           MPA+++      +L+G++ + L  G 
Sbjct: 1   MPAREQMISAYSELVGLDPVSLGDGV 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,444
Number of extensions: 27729
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 19
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.5 bits)