BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2830
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W1O|A Chain A, Nmr Structure Of Dimerization Domain Of Human Ribosomal
           Protein P2
 pdb|2W1O|B Chain B, Nmr Structure Of Dimerization Domain Of Human Ribosomal
           Protein P2
 pdb|2LBF|B Chain B, Solution Structure Of The Dimerization Domain Of Human
           Ribosomal Protein P1P2 HETERODIMER
          Length = 70

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 46/66 (69%)

Query: 39  MRYVXXXXXXXXGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
           MRYV        GG  +P+  D++KIL SVGIE+D ++L  V+ ELNGKN+E++IA G  
Sbjct: 2   MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 61

Query: 99  KLASMP 104
           KLAS+P
Sbjct: 62  KLASVP 67


>pdb|3IZR|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
 pdb|3IZR|WW Chain w, Localization Of The Large Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 113

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%)

Query: 39  MRYVXXXXXXXXGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
           M+++         G  +P+  D+  IL SVG E D EK++++L ++ GK++ E++AAG+E
Sbjct: 1   MKFIAAYLLAYLSGNASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGRE 60

Query: 99  KLASMP 104
           K A++P
Sbjct: 61  KFAAVP 66


>pdb|3IZS|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
 pdb|3IZS|WW Chain w, Localization Of The Large Subunit Ribosomal Proteins Into
           A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
           Translating 80s Ribosome
          Length = 106

 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 55  NPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKEKLASM 103
            P    ++ IL SVGIE + EK+  VL  L GK+++E+I  G EKLA++
Sbjct: 16  TPDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKLAAV 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.133    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,292,764
Number of Sequences: 62578
Number of extensions: 130389
Number of successful extensions: 282
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 4
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)