RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2830
(183 letters)
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 138 bits (350), Expect = 7e-43
Identities = 71/111 (63%), Positives = 85/111 (76%), Gaps = 5/111 (4%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M+YVAAYLLA LGG +P+ DV+KIL SVG+E D EKL V+ EL GK++EE+IAAGKE
Sbjct: 1 MKYVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEGKDVEELIAAGKE 60
Query: 99 KLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
KLAS+P+G G + +A AAA AAAA KKEEKK E +EE SDDDMGFG
Sbjct: 61 KLASVPAGAGGAAPAAAAAAAAAAAA--KKEEKKEESEEE---SDDDMGFG 106
>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2;
Provisional.
Length = 113
Score = 98.6 bits (245), Expect = 4e-27
Identities = 59/117 (50%), Positives = 84/117 (71%), Gaps = 7/117 (5%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M+ VAAYLLA LGG P+ D++ IL SVG ++D ++++++L E+ GK++ E+IA+G+E
Sbjct: 1 MKVVAAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKGKDITELIASGRE 60
Query: 99 KLASMPSGGG---AVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFGVWE 152
KLAS+PSGGG A +A+ A AA A E KKEEK EK+E SDDDMGF +++
Sbjct: 61 KLASVPSGGGVAVAAAAAPAAGGAAAPAAEAKKEEKVEEKEE----SDDDMGFSLFD 113
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 86.5 bits (214), Expect = 2e-22
Identities = 51/113 (45%), Positives = 72/113 (63%), Gaps = 4/113 (3%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M+YVAAYL+ LGG ENP + +V+ +LS+V + + + L K L GK E+IAAG +
Sbjct: 3 MKYVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEGKTPHELIAAGMK 62
Query: 99 KLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFGVW 151
KL ++ GGG +A+A AA A A K E KK EKKEE + +DD+GF ++
Sbjct: 63 KLQNI--GGGVAAAAAPAAGAATA--GAKAEAKKEEKKEEEEEEEDDLGFSLF 111
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 75.9 bits (187), Expect = 2e-18
Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M Y+ AYLL L GKE + +++ +L + G+E + + K ++ L G +++E+I E
Sbjct: 1 MEYIYAYLLLHLAGKE-ITEDNLKSVLEAAGVEVEEARAKALVAALEGVDIDEVIKNAAE 59
Query: 99 KLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
A+ + G A +A+AGA A AA A+E ++EEK+ E +EE SDDDM FG
Sbjct: 60 APAAAAAAGAAAAAAAGAEA-AAEADEAEEEEKEEEAEEE---SDDDMLFG 106
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 75.4 bits (185), Expect = 3e-18
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M YVAAYLL GGKE + ++++LS+ G E + E++K+ L LNGKN++E+I+ GKE
Sbjct: 1 MEYVAAYLLLHKGGKE-LTEDKIKELLSAAGAEIEPERVKLFLSALNGKNIDEVISKGKE 59
Query: 99 KLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
++S + A +A+A A A A E KEE++ E D+D GFG
Sbjct: 60 LMSSQAAAAAAPAATAAATAEPAEKAEEAKEEEEEE-------EDEDFGFG 103
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 70.3 bits (173), Expect = 2e-16
Identities = 41/95 (43%), Positives = 63/95 (66%), Gaps = 9/95 (9%)
Query: 55 NPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKEKLASMPSGGGAVSASA 114
P D++ +L + G E +AE+L++++K L GKN++E+IA G KL+ A +A+A
Sbjct: 1 EPTAADIKHVLKAAGKEVEAERLELLVKFLEGKNIKELIANGSAKLS------AAAAAAA 54
Query: 115 GAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
AAA AAAA ++E+K+ E++EE DDDMGFG
Sbjct: 55 AAAAAAAAAAAAEEEKKEEEEEEE---EDDDMGFG 86
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 57.7 bits (140), Expect = 2e-11
Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 26/102 (25%)
Query: 64 ILSSVGIESDAEKLKIVLKE----------------LNGKNLEEIIAAGKEKLASMPSGG 107
IL GIE A+ + +LK L GK+++++++ GG
Sbjct: 10 ILHDDGIEITADNINALLKAAGVNVEPYWPGLFAKALEGKDIKDLLSNVG------GGGG 63
Query: 108 GAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
GA A A AAA AAAA E KKEEKK E++EESD DDMGFG
Sbjct: 64 GAAPA-AAAAAAAAAAAEAKKEEKKEEEEEESD---DDMGFG 101
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 53.0 bits (128), Expect = 1e-09
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 39 MRYV-AAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGK 97
M Y+ AA LL + G + N + +++K+L + G+E D ++K ++ L N+EE I
Sbjct: 1 MEYIYAALLLHSAGKEIN--EDNLKKVLEAAGVEVDEARVKALVAALEDVNIEEAI---- 54
Query: 98 EKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDAS 142
+K A+ P A +A+A AAA A +E ++EE++ E+ EE A+
Sbjct: 55 KKAAAAPVAAAAAAAAAAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 47.7 bits (114), Expect = 1e-07
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 10/111 (9%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M Y+ A LL GKE + +++ +L + G+E D ++K ++ L G N+EE I +
Sbjct: 1 MEYIYAALLLHSAGKE-INEENLKAVLEAAGVEVDEARVKALVAALEGVNIEEAI----K 55
Query: 99 KLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
K A+ P V+A+A AAA AAAAEE ++EE++ E++EE + G G
Sbjct: 56 KAAAAP-----VAAAAAAAAAAAAAEEEEEEEEEEEEEEEESEEEAMAGLG 101
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 44.4 bits (105), Expect = 2e-06
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 11/100 (11%)
Query: 39 MRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKE 98
M Y+ A LL GKE + +++K+L + GIE D ++K ++ L N++E I
Sbjct: 1 MEYIYAALLLHYAGKEINEE-NLKKVLEAAGIEVDEARVKALVAALEEVNIDEAIK---- 55
Query: 99 KLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEE 138
A +A+A AAA AAAAEE +E+++ +KKEE
Sbjct: 56 ------KAAVAAAAAAPAAAAAAAAEEKAEEKEEEKKKEE 89
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 42.3 bits (100), Expect = 4e-05
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 112 ASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
SA AAA AAAA A EE + +DDMGFG
Sbjct: 272 PSAAAAAAAAAAAA--AAAAAAAPAEEEEEEEDDMGFG 307
>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional.
Length = 323
Score = 40.3 bits (94), Expect = 2e-04
Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 80 VLKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEES 139
+E NGK L E AA + L GGG+ +A A AAAPAAA+ K+EE EES
Sbjct: 265 EFEEHNGKELRE--AALEGLLG----GGGSAAAEAAAAAPAAASAAAKEEE------EES 312
Query: 140 DASDDDMGFG 149
D +DD G G
Sbjct: 313 D--EDDFGMG 320
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 32.5 bits (75), Expect = 0.083
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 112 ASAGAAAPAAAAEEGKKEEKKAEKKEESDASD 143
SA A A AA EE ++EE++ E+ E +A+
Sbjct: 292 LSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 29.4 bits (67), Expect = 0.99
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 110 VSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
V ++ AA A EE ++EE++ E EE A+ FG
Sbjct: 291 VLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAGLGALFG 330
>gnl|CDD|100102 cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12. Ribosomal
protein L7/L12 refers to the large ribosomal subunit
proteins L7 and L12, which are identical except that L7
is acetylated at the N terminus. It is a component of
the L7/L12 stalk, which is located at the surface of the
ribosome. The stalk base consists of a portion of the
23S rRNA and ribosomal proteins L11 and L10. An extended
C-terminal helix of L10 provides the binding site for
L7/L12. L7/L12 consists of two domains joined by a
flexible hinge, with the helical N-terminal domain (NTD)
forming pairs of homodimers that bind to the extended
helix of L10. It is the only multimeric ribosomal
component, with either four or six copies per ribosome
that occur as two or three dimers bound to the L10
helix. L7/L12 is the only ribosomal protein that does
not interact directly with rRNA, but instead has
indirect interactions through L10. The globular
C-terminal domains of L7/L12 are highly mobile. They are
exposed to the cytoplasm and contain binding sites for
other molecules. Initiation factors, elongation factors,
and release factors are known to interact with the
L7/L12 stalk during their GTP-dependent cycles. The
binding site for the factors EF-Tu and EF-G comprises
L7/L12, L10, L11, the L11-binding region of 23S rRNA,
and the sarcin-ricin loop of 23S rRNA. Removal of L7/L12
has minimal effect on factor binding and it has been
proposed that L7/L12 induces the catalytically active
conformation of EF-Tu and EF-G, thereby stimulating the
GTPase activity of both factors. In eukaryotes, the
proteins that perform the equivalent function to L7/L12
are called P1 and P2, which do not share sequence
similarity with L7/L12. However, a bacterial L7/L12
homolog is found in some eukaryotes, in mitochondria and
chloroplasts. In archaea, the protein equivalent to
L7/L12 is called aL12 or L12p, but it is closer in
sequence to P1 and P2 than to L7/L12.
Length = 127
Score = 31.4 bits (72), Expect = 0.11
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 81 LKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAE 134
LKEL E++ A +EK S A A AAAPAAAA + E+K E
Sbjct: 10 LKELTLLEAAELVKALEEKFGVSASAAAAA---AAAAAPAAAAAAAAEAEEKTE 60
>gnl|CDD|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 31.1 bits (70), Expect = 0.31
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 86 GKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDAS--- 142
L+EI+ ++ LA+ + G A AAA E K K EK+ S S
Sbjct: 843 EAKLDEILGKQQQALAAAQESLAIQQRTNGLAERQAAAIE--KLAKAVEKQLSSIKSAYT 900
Query: 143 -----DDDMGFGVWEARTNGKKELTEDTN 166
+ E R +ELT N
Sbjct: 901 YGAFISLTQYLAIQE-RARRTRELTAKAN 928
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 30.4 bits (69), Expect = 0.55
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 96 GKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKK--------EESDASDDDMG 147
+EK A+ GGG + ++ E KK+ KK +K ++ D +DD G
Sbjct: 153 QQEKEAAGSGGGGGGTWGLVGVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDG 212
Query: 148 FGVWEARTNGKKE----LTEDTNPIRMGKKN 174
G E ++E +TE R GKKN
Sbjct: 213 EGGGEGGEERQREHPFIVTEPGEVAR-GKKN 242
>gnl|CDD|107307 cd06312, PBP1_ABC_sugar_binding_like_4, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Periplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 271
Score = 29.9 bits (68), Expect = 0.61
Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 40 RYVAAYLLAALGGKE----NPAQGDVEKILSSVGIESDAEKLKIVLKEL-NGKNLEEIIA 94
L GGK G+V G I + + G + E+ +
Sbjct: 113 EAAGERLAELKGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEEVIETGADPTEVAS 172
Query: 95 AGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFGVWEAR 154
L + P ++ A +AAPAA A K+A K + D+ +A
Sbjct: 173 RIAAYLRANPDVDAVLTLGAPSAAPAAKA------LKQAGLKGKVKLGGFDLSPATLQAI 226
Query: 155 TNGKKELTEDTNPIRMG 171
G + D P G
Sbjct: 227 KAGYIQFAIDQQPYLQG 243
>gnl|CDD|226714 COG4263, NosZ, Nitrous oxide reductase [Energy production and
conversion].
Length = 637
Score = 30.3 bits (68), Expect = 0.67
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 100 LASMPSGGGAVSASAGAAAPAAAAEEGKKEE 130
A GGA++ S PAAAAEE
Sbjct: 24 AAGAVGAGGALTGSGATTTPAAAAEESGSAY 54
>gnl|CDD|226317 COG3794, PetE, Plastocyanin [Energy production and conversion].
Length = 128
Score = 28.5 bits (64), Expect = 0.98
Identities = 13/49 (26%), Positives = 15/49 (30%), Gaps = 7/49 (14%)
Query: 101 ASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDDMGFG 149
+ G AGAA P AAA+E K M F
Sbjct: 11 MFLTGGATLAGVVAGAAGPEAAADEEVASVNK-------GVDIGAMVFE 52
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 28.4 bits (64), Expect = 1.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 106 GGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESD 140
GG A+ A AA E+ +KE+KK +KKE D
Sbjct: 59 GGRKGPAAGEEAGKAAEEEKKEKEKKKKKKKELED 93
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 29.5 bits (66), Expect = 1.1
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 56 PAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAG 115
A G +++I VG D + V+ L + A K++ A P+ G A+
Sbjct: 48 SAAGIIKEIKVKVG---DTLPVGGVIATLEVGAGAQAQAEAKKEAAPAPTAGAPAPAAQA 104
Query: 116 AAAPAAAAEEGKKE 129
AAPAA G +E
Sbjct: 105 QAAPAAGQSSGVQE 118
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 29.1 bits (65), Expect = 1.6
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 69 GIESDAEKLKIVLKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKK 128
ES+AEK + +EL K +E A KE L + + A A + KK
Sbjct: 3 RTESEAEKKILTEEELERKKKKEEKAKEKE-LKKLKAAQKEAKAKLQAQQASDGTNVPKK 61
Query: 129 EEKKAEKKEESDASDDD 145
EKK+ K++ D + +D
Sbjct: 62 SEKKSRKRDVEDENPED 78
>gnl|CDD|217958 pfam04197, Birna_RdRp, Birnavirus RNA dependent RNA polymerase
(VP1). Birnaviruses are dsRNA viruses. This family
corresponds to the RNA dependent RNA polymerase. This
protein is also known as VP1. All of the birnavirus VP1
proteins contain conserved RdRp motifs that reside in
the catalytic "palm" domain of all classes of
polymerases. However, the birnavirus RdRps lack the
highly conserved Gly-Asp-Asp (GDD) sequence, a component
of the proposed catalytic site of this enzyme family
that exists in the conserved motif VI of the palm domain
of other RdRps.
Length = 855
Score = 29.1 bits (65), Expect = 1.6
Identities = 34/135 (25%), Positives = 44/135 (32%), Gaps = 22/135 (16%)
Query: 22 PTSNPGLQSQAGGYLRIMRYVAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVL 81
P S G + A RI A LA L K PA V+ S S +L +
Sbjct: 726 PKSAVGRKLTARAKSRINDDPQAEALADLATKLKPASSTVDNWASRTEELSVQLQLLLKA 785
Query: 82 KELNGKNLEEI-----------IAAGKE------KLASMPSGGGAVSASAGAAAPAAAAE 124
L LEE I GK A+ P G + A P A
Sbjct: 786 NTLAKSQLEETREALEVVQSDKIITGKSPPEKNPGKAANPVVGYHLPAERAPLTPKA--- 842
Query: 125 EGKKEEKKAEKKEES 139
+K K+ EK+ +
Sbjct: 843 --RKMAKRREKQRRN 855
>gnl|CDD|201183 pfam00367, PTS_EIIB, phosphotransferase system, EIIB.
Length = 35
Score = 25.8 bits (58), Expect = 1.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 43 AAYLLAALGGKEN 55
A +L ALGGK+N
Sbjct: 1 AKEILEALGGKDN 13
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family.
Length = 399
Score = 28.4 bits (64), Expect = 2.1
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 106 GGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEES 139
G V G A AAA G + + +K E
Sbjct: 152 GSTVVHIFGGYAGLAAALVLGPRIGRFTDKNEAI 185
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase;
Validated.
Length = 407
Score = 28.3 bits (64), Expect = 2.2
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 68 VGIESDAEKLKIVLK---ELNGKNLEEIIA------AGKEKLASMPSGGGAVSASAGAAA 118
V IE+D K+VL+ G L EI+A + L + G A +A+A AAA
Sbjct: 37 VEIETD----KVVLEVPAPAAGV-LSEILAEEGDTVTVGQVLGRIDEGAAAGAAAAAAAA 91
Query: 119 PAAAAEEGKKEEKKAEKKEESDA 141
AAAA + + A ++ +DA
Sbjct: 92 AAAAAAAPAQAQAAAAAEQSNDA 114
>gnl|CDD|222629 pfam14257, DUF4349, Domain of unknown function (DUF4349). This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 282 and
353 amino acids in length. There is a single completely
conserved residue D that may be functionally important.
Length = 262
Score = 28.0 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 105 SGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEESDASDDD 145
SGG +AS AAAPAAAA AE + D
Sbjct: 5 SGGSDSAASEAAAAPAAAAAAAADAGAGAEAPAAAAPPAAD 45
>gnl|CDD|234671 PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.
Length = 123
Score = 27.1 bits (61), Expect = 2.8
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 81 LKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEK 131
LKE+ L E++ A +EK VSA+A AA AAAA EEK
Sbjct: 12 LKEMTVLELSELVKALEEKFG--------VSAAAPVAAAAAAAAAAAAEEK 54
>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 401
Score = 28.0 bits (63), Expect = 2.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 138 ESDASDDDMGFGVWEARTNGKKELTE 163
E D D M F +W + TNGK T+
Sbjct: 80 EYDYFYDVMPFSIWISGTNGKTTTTQ 105
>gnl|CDD|193561 cd08013, M20_ArgE_DapE_like3, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. This group includes the
hypothetical protein ygeY from Escherichia coli, a
putative deacetylase, but many in this subfamily are
classified as unassigned peptidases. ArgE/DapE enzymes
catalyze analogous reactions and share a common
activator, the metal ion (usually Co2+ or Zn2+). ArgE
catalyzes a broad range of substrates, including
N-acetylornithine, alpha-N-acetylmethionine and
alpha-N-formylmethionine, while DapE catalyzes the
hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP)
to L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly fungal and bacterial, and have
been inferred by homology as being related to both ArgE
and DapE.
Length = 377
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 18 LILIPTSNPGLQSQAGGYLRIMRYVAAYL 46
L+ I +SNP L G I Y+A +L
Sbjct: 10 LVRIDSSNPTLGPGGAGEAEIAAYIADWL 38
>gnl|CDD|223300 COG0222, RplL, Ribosomal protein L7/L12 [Translation, ribosomal
structure and biogenesis].
Length = 124
Score = 26.9 bits (60), Expect = 3.3
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 81 LKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEE 125
LKEL L E++ A +EK + V+A+A AA A AAEE
Sbjct: 12 LKELTVLELSELVKALEEKFGV--TAAAPVAAAAAGAAAAEAAEE 54
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 27.9 bits (63), Expect = 3.4
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 91 EIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKKEE 138
E+IAA KE GGGA +A+A AAPAAAA + A + E+
Sbjct: 50 ELIAAIKEAR-----GGGAAAAAATPAAPAAAARRAARAAAAARQAEQ 92
>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 27.4 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 94 AAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKKAEKK 136
AA + AS + A + GAA A AA ++ E E+K
Sbjct: 27 AAAEAHHASAAAAAAAPAGEHGAAVHAEAAAHAEQAEGGHEEK 69
>gnl|CDD|181206 PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.
Length = 593
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 103 MPSGGGAVSASAGAAAPAAA 122
+P G A A A+APAAA
Sbjct: 197 IPLHGWVPQAHANASAPAAA 216
>gnl|CDD|146463 pfam03842, Silic_transp, Silicon transporter.
Length = 513
Score = 27.5 bits (61), Expect = 5.2
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 25/105 (23%)
Query: 64 ILSSVGIESDAEKLKIVLKELNGKNLEEI-IAAGKEKLA------SMPSGGG-------- 108
IL + GI S A L + K++ +E+ + +E+ A MPSG
Sbjct: 403 ILEATGICSGAWVLARIHKKVAKFQYDEVYVGTPEERAAQDKADAQMPSGAEHLMGTNFE 462
Query: 109 --------AVSASAGAAAPAAAAEEGKKEEKKA--EKKEESDASD 143
+ AG+ A EE E KA E+ + +A D
Sbjct: 463 SLVGQSQDVLDEKAGSDEEGAKFEEAPVPETKALLEQNQSQEALD 507
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 27.2 bits (61), Expect = 5.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 90 EEIIAAGKEKLASMPSGGGAVSASAG 115
+++A KE L ++ G GA + SAG
Sbjct: 91 ADVVARAKEYLNAIGGGTGAYTDSAG 116
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 26.8 bits (60), Expect = 5.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 128 KEEKKAEKKEESDASDDDMGFGVWEARTNGKKE 160
KEEKKA KEE D ++ G+ + +G+KE
Sbjct: 107 KEEKKAI-KEEKDKLEEPYGYCLV----DGRKE 134
>gnl|CDD|182245 PRK10110, PRK10110, bifunctional PTS system maltose and
glucose-specific transporter subunits IICB; Provisional.
Length = 530
Score = 27.0 bits (60), Expect = 6.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 41 YVAAYLLAALGGKENPAQGD--VEKILSSVGIES--DAEKLK----IVLKELNGKNLEEI 92
Y +L ALGG +N D + ++ SV S D + LK I + +LN NL+ +
Sbjct: 450 YNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVDVQALKDNRAIGVVQLNQHNLQVV 509
Query: 93 IAAG----KEKLASM 103
I K+++A +
Sbjct: 510 IGPQVQSVKDEMAGL 524
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 26.2 bits (58), Expect = 6.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 113 SAGAAAPAAAAEEGKKEEKKAEKKEESDASDDD 145
S G A EE KE++ + E + D+D
Sbjct: 73 SGGIKQAAKEPEEDDKEDESEDDDESDEDDDED 105
>gnl|CDD|238130 cd00212, PTS_IIB_glc, PTS_IIB, PTS system, glucose/sucrose
specific IIB subunit. The bacterial
phosphoenolpyruvate: sugar phosphotransferase system
(PTS) is a multi-protein system involved in the
regulation of a variety of metabolic and
transcriptional processes. This family is one of four
structurally and functionally distinct group IIB PTS
system cytoplasmic enzymes, necessary for the uptake of
carbohydrates across the cytoplasmic membrane and their
phosphorylation.
Length = 78
Score = 25.6 bits (57), Expect = 6.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 43 AAYLLAALGGKEN 55
A +L ALGGKEN
Sbjct: 4 AKDILEALGGKEN 16
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 27.1 bits (60), Expect = 6.6
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 104 PSGGGAVSASAGAAAPAAAAEEGKKE-----EKKAEKKEESDASDD 144
PS A +A +P EE ++ E KA K +S D
Sbjct: 202 PSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGD 247
>gnl|CDD|235082 PRK02888, PRK02888, nitrous-oxide reductase; Validated.
Length = 635
Score = 27.2 bits (61), Expect = 6.6
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 101 ASMPSGGGAVSASAGAAAPAAAAEEGKKEE 130
S GGA++A A AAA AAAA G K E
Sbjct: 28 GSTGLLGGALAAGAAAAAAAAAAAAGGKYE 57
>gnl|CDD|165587 PHA03343, PHA03343, US22 family homolog; Provisional.
Length = 578
Score = 26.9 bits (59), Expect = 6.7
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 108 GAVSASAGAAAPAAAAEEGKKEEKKAEKKE 137
G +A AAA AAAAE+G++EE+ +K E
Sbjct: 102 GPGGETAAAAAAAAAAEKGEEEEEAGDKIE 131
>gnl|CDD|214358 CHL00083, rpl12, ribosomal protein L12.
Length = 131
Score = 26.1 bits (58), Expect = 6.9
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 101 ASMPSGGGAVSASAGAAAPAAAAEEGKKE 129
AS P GGG +SA A AAA AA E K E
Sbjct: 35 ASAPVGGGMMSAPAAAAAQAAEEVEEKTE 63
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 25.7 bits (57), Expect = 8.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 117 AAPAAAAEEGKKEEKKAEKKEESDASDDDM 146
APAA AE+ K+++ E +++ DDD
Sbjct: 44 RAPAADAEDAAKKDEDEEDEDDVVLDDDDD 73
>gnl|CDD|221084 pfam11336, DUF3138, Protein of unknown function (DUF3138). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 514
Score = 26.8 bits (59), Expect = 8.1
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 72 SDAEKLKIVLKELNGKNLEEIIAAGKEKLASMP--SGGGAV---SASAGAAAPAAAAEEG 126
SDA ++K + +L L++ + + LA+ P +GGGA +A+A AAAP++ A
Sbjct: 22 SDASQIKALQAQLTA--LQQQVNELRAALAAKPAAAGGGAKIQSAAAAAAAAPSSDAAAA 79
Query: 127 KKEEKKAEKKEE 138
+ + +E+
Sbjct: 80 LTNDDVTQMREQ 91
>gnl|CDD|233030 TIGR00575, dnlj, DNA ligase, NAD-dependent. All proteins in this
family with known functions are NAD-dependent DNA
ligases. Functions of these proteins include DNA repair,
DNA replication, and DNA recombination. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). The member of this
family from Treponema pallidum differs in having three
rather than just one copy of the BRCT (BRCA1 C Terminus)
domain (pfam00533) at the C-terminus. It is included in
the seed [DNA metabolism, DNA replication,
recombination, and repair].
Length = 652
Score = 26.9 bits (60), Expect = 8.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 46 LLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKEKLASMPS 105
LL A+ + + ++L ++GI E L + + L+++ AA E+L S+
Sbjct: 482 LLNAIEKSKEKP---LARLLFALGIRHVGEVTAKNLAK-HFGTLDKLKAASLEELLSVEG 537
Query: 106 GGGAVSAS 113
G V+ S
Sbjct: 538 VGPKVAES 545
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.
Length = 547
Score = 26.7 bits (60), Expect = 9.0
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 80 VLKELNGKNLEEIIAAGKEKLASMPSGGGAVSAS--AGAAAPAAAAEEGKKEEKKAEKKE 137
V+KE+ K + + ++ G LA + + G A +A+ A AAAPAAAA A
Sbjct: 54 VVKEIKVK-VGDTVSVGGL-LAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAA 111
Query: 138 ESDAS 142
+ A
Sbjct: 112 AAAAG 116
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 26.1 bits (58), Expect = 9.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 128 KEEKKAEKKEESDASDDDMGFGVWEARTNGKKE 160
KEEKKA KEE + ++ G+ + +G KE
Sbjct: 106 KEEKKAI-KEEKEKLEEPYGYCLV----DGHKE 133
>gnl|CDD|183208 PRK11572, PRK11572, copper homeostasis protein CutC; Provisional.
Length = 248
Score = 26.1 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 61 VEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAG 96
V +IL+S G + DAE+ ++ EL + II AG
Sbjct: 142 VARILTS-GQQQDAEQGLSLIMELIAASDGPIIMAG 176
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.127 0.346
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,476,969
Number of extensions: 905353
Number of successful extensions: 2016
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1679
Number of HSP's successfully gapped: 188
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (25.3 bits)