RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2830
(183 letters)
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 27.4 bits (59), Expect = 1.1
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 90 EEIIAA-----GKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKK 132
+E +AA EK+ P+ G A++A E +
Sbjct: 246 QEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLP 293
>d1rh7a_ g.77.1.1 (A:) Resistin-like beta (FIZZ2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 81
Score = 25.2 bits (55), Expect = 1.7
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 75 EKLKIVLKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAA 117
+++K L K + +LAS P+G + G
Sbjct: 9 QRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYG 51
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 25.8 bits (57), Expect = 2.5
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 128 KEEKKAEKKEESDASDDDMGFGVWEARTNGKKE 160
+EKK + E + ++D F +G++E
Sbjct: 113 SQEKKQI-RLEREKFEEDYKFCEL----DGRRE 140
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 24.6 bits (54), Expect = 2.9
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 42 VAAYLLAALGGKENPAQGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAG 96
+A L+AA GGKEN I + +++ +L++ + +++ + + G
Sbjct: 1 MAPALVAAFGGKEN--------ITN---LDACITRLRVSVADVSKVDQAGLKKLG 44
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 26.1 bits (56), Expect = 3.1
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 90 EEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEKK 132
E ++ A + V GA AA E G + +
Sbjct: 258 EALLEAERLLFTRT----KQVVEPTGALPLAAVLEHGARLPQT 296
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation
(N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Length = 57
Score = 23.7 bits (51), Expect = 4.7
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 75 EKLKIVLKELNGKNLEEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGK 127
+++ +++L L E++ ++K + AV+A+ A A A AA+E K
Sbjct: 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEK 56
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 24.8 bits (53), Expect = 6.7
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 58 QGDVEKILSSVGIESDAEKLKIVLKELNGKNLEEIIAAGKEKL 100
+ +G + L L L + + +L
Sbjct: 257 HPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 24.8 bits (53), Expect = 6.9
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 90 EEIIAAGKEKLASMPSGGGAVSASAGAAAPAAAAEEGKKEEK 131
EE + A E L+ G + A A A A A + K+ +
Sbjct: 325 EEALKAFHE-LSRTE---GIIPALESAHAVAYAMKLAKEMSR 362
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId:
354]}
Length = 106
Score = 23.9 bits (51), Expect = 7.4
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 144 DDMGFGVWEARTNGKKELTEDTNPIRMGKKNIPRSQKWD 182
+D + EL E I K +P ++ WD
Sbjct: 57 EDEVPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWD 95
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 23.5 bits (50), Expect = 8.0
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 82 KELNGKNLEEIIAAGKEKLASMPSGG 107
GK+L + L S PS G
Sbjct: 63 YSFRGKDLIVQLQPTDALLCSGPSSG 88
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp.
pcc 6803 [TaxId: 1148]}
Length = 279
Score = 24.5 bits (52), Expect = 8.7
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 10 ANAEVYFGLILIPTSNPGLQSQAGGYLRIMRYVAAYLLAALGGKEN 55
A L + S +L ++ Y A + L N
Sbjct: 236 TGARFGGNLYVDSLSTEE--GPVPTFLDLLEYDARVITNGLLAGTN 279
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 24.7 bits (53), Expect = 9.5
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 3 KLPRPNSANAEVY--FGLILIPTSNPGLQSQAGGYLRIM--------RYVAAYLLAALGG 52
K+ N+ NA ++ LI+ S P L +A L RY+A + L
Sbjct: 291 KVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLAS 350
Query: 53 KENPAQG-------DVEKILSSVGIESDAEKLKIVLKELNGKNLEEII 93
E + + + + + + ++ + N ++I+
Sbjct: 351 SEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIV 398
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.127 0.346
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,187
Number of extensions: 29194
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 24
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 50 (23.5 bits)