BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2832
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/360 (63%), Positives = 266/360 (73%), Gaps = 53/360 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+DPMGGIVMTNDGNAILREI VQHPA KSMIEI+RTQDEEVGDGTTSVI+LAGEML+V
Sbjct: 37 MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSV 96
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE FL QMHPTV+I AYR AL+DM++ L+ K+S P+D S+R ++ +I + + TK I +
Sbjct: 97 AEHFLEQQMHPTVVISAYRKALDDMISTLK-KISIPVDTSNRDTMLNIINSSITTKVISR 155
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
WS LACNIALDAV+TV EE+GRKEIDIK+YA+VEKIPGG IEDSCVLRGVM+NKDVTHP
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+MRR I+NPRIVLLD +LEYKKGESQT++EI E D
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREED------------------------ 251
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
FT+ILQ +C DII LKPD++ TEKG
Sbjct: 252 --------------------FTRILQ--------MEEEYIQQLCEDIIQLKPDVVITEKG 283
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
ISDLAQH+L++ANITAIRRVRK+DNNRIARACGA IV+R EELREEDVGTGAGL EIKK+
Sbjct: 284 ISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKI 343
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 351 bits (900), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 244/367 (66%), Gaps = 60/367 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+DPMGG+V+TNDG+AILREI V HPA KSM+E++RTQDEEVGDGTT+VI+LAGE+L
Sbjct: 47 MLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQ 106
Query: 61 AEKFLSDQ-MHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
+L ++ +HP +II+A + AL D + +++ +VS P+D + + + ++I+A +GTK++
Sbjct: 107 CAPYLIEKNIHPVIIIQALKKALTDALEVIK-QVSKPVDVENDAAMKKLIQASIGTKYVI 165
Query: 120 KWSDLACNIALDAVQTV------TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVML 173
WS+ C +ALDAV+TV TVE EIDIKRY +VEKIPGG + DS VL+GV+L
Sbjct: 166 HWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLL 225
Query: 174 NKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENP 233
NKDV HPKM R IENPR+VLLDC LEYKKGESQTN+EI E DW R + +IE
Sbjct: 226 NKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRIL-------QIEEE 278
Query: 234 RIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPD 293
++ L+ C I+A++P
Sbjct: 279 QVQLM---------------------------------------------CEQILAVRPT 293
Query: 294 LIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAG 353
L+ TEKG+SDLAQH+LLK + +RRV+KSDNNRIAR GATIVNR E+L+E DVGT G
Sbjct: 294 LVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCG 353
Query: 354 LFEIKKV 360
LF+++ +
Sbjct: 354 LFKVEMI 360
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/199 (54%), Positives = 128/199 (64%), Gaps = 52/199 (26%)
Query: 162 IEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSV 221
+EDSCVLRGVM+NKDVT
Sbjct: 1 MEDSCVLRGVMINKDVT------------------------------------------- 17
Query: 222 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXX 281
HP+MRR I+NPRIVLLD +LEYKKGESQT++EI E +FT+ILQ
Sbjct: 18 -HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQ------- 69
Query: 282 XVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTE 341
+C DII LKPD++ TEKGISDLAQH+L++AN+TAIRRVRK+DNNRIARACGA IV+R E
Sbjct: 70 -LCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPE 128
Query: 342 ELREEDVGTGAGLFEIKKV 360
ELRE+DVGTGAGL EIKK+
Sbjct: 129 ELREDDVGTGAGLLEIKKI 147
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 192/349 (55%), Gaps = 54/349 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TNDG IL +I +QHPA K M+E+A+TQD+E GDGTT+ +V+AGE+L
Sbjct: 51 MLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 110
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HP++I K Y A E IL+ +++ +D D L+++ + K
Sbjct: 111 AEELLDQNIHPSIITKGYALAAEKAQEILD-EIAIRVDPDDEETLLKIAATSITGKNAES 169
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+L +A++AV+ V ++ G+ +D+ K EK G +E+S ++RGV+++K+V HP
Sbjct: 170 HKELLAKLAVEAVKQVAEKKDGKYVVDLDNI-KFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+M +R+EN +I L++ LE KK E+D + ++T P D
Sbjct: 229 RMPKRVENAKIALINEALEVKK----------TETDAKINITSP--------------DQ 264
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+ + + E + ++V+ I +++F +KG
Sbjct: 265 LMSFLEQEEKMLKDMVDH----------------------------IAQTGANVVFVQKG 296
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
I DLAQH+L K I A+RRV+KSD ++A+A GA IV ++L ED+G
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLG 345
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 118/349 (33%), Positives = 192/349 (55%), Gaps = 54/349 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TND IL +I +QHPA K M+E+A+TQD+E GDGTT+ +V+AGE+L
Sbjct: 51 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 110
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HP++IIK Y A E IL+ +++ +D D L+++ + K
Sbjct: 111 AEELLDQNIHPSIIIKGYALAAEKAQEILD-EIAIRVDPDDEETLLKIAATSITGKNAES 169
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+L +A++AV+ V ++ G+ +D+ K EK G +E+S ++RGV+++K+V HP
Sbjct: 170 HKELLAKLAVEAVKQVAEKKDGKYVVDLDNI-KFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+M +R+EN +I L++ LE KK E+D + ++T P D
Sbjct: 229 RMPKRVENAKIALINEALEVKK----------TETDAKINITSP--------------DQ 264
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+ + + E + ++V+ I +++F +KG
Sbjct: 265 LMSFLEQEEKMLKDMVDH----------------------------IAQTGANVVFVQKG 296
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
I DLAQH+L K I A+RRV+KSD ++A+A GA IV ++L ED+G
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLG 345
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 191/349 (54%), Gaps = 54/349 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TND IL +I +QHPA K M+E+A+TQD+E GDGTT+ +V+AGE+L
Sbjct: 51 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 110
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HP++I K Y A E IL+ +++ +D D L+++ + K
Sbjct: 111 AEELLDQNIHPSIITKGYALAAEKAQEILD-EIAIRVDPDDEETLLKIAATSITGKNAES 169
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+L +A++AV+ V ++ G+ +D+ K EK G +E+S ++RGV+++K+V HP
Sbjct: 170 HKELLAKLAVEAVKQVAEKKDGKYVVDLDNI-KFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+M +R+EN +I L++ LE KK E+D + ++T P D
Sbjct: 229 RMPKRVENAKIALINEALEVKK----------TETDAKINITSP--------------DQ 264
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+ + + E + ++V+ I +++F +KG
Sbjct: 265 LMSFLEQEEKMLKDMVDH----------------------------IAQTGANVVFVQKG 296
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
I DLAQH+L K I A+RRV+KSD ++A+A GA IV ++L ED+G
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLG 345
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 195/361 (54%), Gaps = 54/361 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D MG IV+TNDG IL+E+ +QHPA K ++E+++TQD EVGDGTT+ VL+GE+L+
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ + +H T+I + YR A E ILET ++ + D + LI++ + K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILET-ITIAISPDDEAALIKIAGTAITGKGAEA 119
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ + + + AV+++ EE ++++ K+EK GG+I+DS ++ G+++
Sbjct: 120 YKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVI------- 172
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
D RS HP M ++EN +I+LL C
Sbjct: 173 -----------------------------------DKERS--HPNMPEKVENAKILLLSC 195
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+E++K E + ++I + + L + +IA +++F +KG
Sbjct: 196 PVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMRE--------MAEKVIASGANVVFCQKG 247
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I D+AQ+++ KA I A+RRV+KSD R+++ GATI+ +++ EDVGT AGL E K+V
Sbjct: 248 IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT-AGLVEEKEV 306
Query: 361 K 361
+
Sbjct: 307 R 307
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 201/361 (55%), Gaps = 60/361 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 41 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 100
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 101 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 159
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 160 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKERVSA 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHP-KMRRRIENPRIVLLD 239
+M +++ + +I LL+C +E K E++T+ EI +T P K+ IE +L D
Sbjct: 216 QMPKKVTDAKIALLNCAIEIK--ETETDAEI--------RITDPAKLMEFIEQEEKMLKD 265
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEK 299
E K A +++F +K
Sbjct: 266 MVAEIK-------------------------------------------ASGANVLFCQK 282
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
GI DLAQH+L K I A RRV+KSD ++A+A GA ++ ++L +D+G AGL E +K
Sbjct: 283 GIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERK 341
Query: 360 V 360
+
Sbjct: 342 I 342
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 201/361 (55%), Gaps = 60/361 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 47 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 106
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 107 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 165
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 166 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKERVSA 221
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHP-KMRRRIENPRIVLLD 239
+M +++ + +I LL+C +E K E++T+ EI +T P K+ IE +L D
Sbjct: 222 QMPKKVTDAKIALLNCAIEIK--ETETDAEI--------RITDPAKLMEFIEQEEKMLKD 271
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEK 299
E K A +++F +K
Sbjct: 272 MVAEIK-------------------------------------------ASGANVLFCQK 288
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
GI DLAQH+L K I A RRV+KSD ++A+A GA ++ ++L +D+G AGL E +K
Sbjct: 289 GIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERK 347
Query: 360 V 360
+
Sbjct: 348 I 348
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/358 (31%), Positives = 200/358 (55%), Gaps = 54/358 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TNDG IL+E+ V+HPA K M+E+++TQD VGDGTT+ +++AG +L
Sbjct: 49 MLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQ 108
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A+ ++ +HPTVI + YR A E+ +++ ++ST + +++ L+++ + + +K
Sbjct: 109 AQGLINQNVHPTVISEGYRMASEEAKRVID-EISTKIGADEKALLLKMAQTSLNSKSASV 167
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
D I+ +AV++V G+ +D V+K GG I+D+ ++ G++++K+ HP
Sbjct: 168 AKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKK-QGGAIDDTQLINGIIVDKEKVHP 226
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +++ +I LLD LE KK E TN+ RIE+P ++
Sbjct: 227 GMPDVVKDAKIALLDAPLEIKKPEFDTNL-------------------RIEDPSMI---- 263
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
++ E E+V++ I ++ +++ T+KG
Sbjct: 264 -QKFLAQEENMLREMVDK----------------------------IKSVGANVVITQKG 294
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIK 358
I D+AQH+L +A I A+RRV+KSD +++A+A GA+IV+ +E+ D+GT + ++K
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVK 352
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 199/361 (55%), Gaps = 60/361 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 41 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 100
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 101 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 159
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 160 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKERVSA 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHP-KMRRRIENPRIVLLD 239
+M +++ + +I LL+C +E K E++T+ EI +T P K+ IE +L D
Sbjct: 216 QMPKKVTDAKIALLNCAIEIK--ETETDAEI--------RITDPAKLMEFIEQEEKMLKD 265
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEK 299
E K A +++F +K
Sbjct: 266 MVAEIK-------------------------------------------ASGANVLFCQK 282
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
GI DLAQH+L K I A RRV+KSD ++A+A GA ++ L +D+G AGL E +K
Sbjct: 283 GIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERK 341
Query: 360 V 360
+
Sbjct: 342 I 342
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/361 (32%), Positives = 199/361 (55%), Gaps = 60/361 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 47 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 106
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 107 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 165
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 166 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKERVSA 221
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHP-KMRRRIENPRIVLLD 239
+M +++ + +I LL+C +E K E++T+ EI +T P K+ IE +L D
Sbjct: 222 QMPKKVTDAKIALLNCAIEIK--ETETDAEI--------RITDPAKLMEFIEQEEKMLKD 271
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEK 299
E K A +++F +K
Sbjct: 272 MVAEIK-------------------------------------------ASGANVLFCQK 288
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
GI DLAQH+L K I A RRV+KSD ++A+A GA ++ L +D+G AGL E +K
Sbjct: 289 GIDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERK 347
Query: 360 V 360
+
Sbjct: 348 I 348
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 191/360 (53%), Gaps = 80/360 (22%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 41 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 100
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 101 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 159
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 160 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKE---- 211
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
R S PK ++ + +I LL+C
Sbjct: 212 -------------------------------------RVSAQMPK---KVTDAKIALLNC 231
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+E +T E++ + + +I A +++F +KG
Sbjct: 232 AIE------ETASEMLKD------------------------MVAEIKASGANVLFCQKG 261
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L K I A RRV+KSD ++A+A GA ++ ++L +D+G AGL E +K+
Sbjct: 262 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKI 320
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 191/360 (53%), Gaps = 80/360 (22%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 47 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 106
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 107 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 165
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 166 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKE---- 217
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
R S PK ++ + +I LL+C
Sbjct: 218 -------------------------------------RVSAQMPK---KVTDAKIALLNC 237
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+E +T E++ + + +I A +++F +KG
Sbjct: 238 AIE------ETASEMLKD------------------------MVAEIKASGANVLFCQKG 267
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L K I A RRV+KSD ++A+A GA ++ ++L +D+G AGL E +K+
Sbjct: 268 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKI 326
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 191/360 (53%), Gaps = 80/360 (22%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 41 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 100
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 101 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 159
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 160 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKE---- 211
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
R S PK ++ + +I LL+C
Sbjct: 212 -------------------------------------RVSAQMPK---KVTDAKIALLNC 231
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+E +T E++ + + +I A +++F +KG
Sbjct: 232 AIE------ETASEMLKD------------------------MVAEIKASGANVLFCQKG 261
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L K I A RRV+KSD ++A+A GA ++ ++L +D+G AGL E +K+
Sbjct: 262 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGD-AGLVEERKI 320
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 189/360 (52%), Gaps = 80/360 (22%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 41 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 100
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+T ++ + D+ L ++ + K K
Sbjct: 101 AEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGKGAEK 159
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V V++ G+ + D+ K+EK G +I+D+ +++GV+++K+
Sbjct: 160 AKEKLAEIIVEAVSAV-VDDEGKVDKDL---IKIEKKSGASIDDTELIKGVLVDKE---- 211
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
R S PK ++ + +I LL+C
Sbjct: 212 -------------------------------------RVSAQMPK---KVTDAKIALLNC 231
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+E +T E++ + + +I A +++F +KG
Sbjct: 232 AIE------ETASEMLKD------------------------MVAEIKASGANVLFCQKG 261
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L K I A RRV+KSD ++A+A GA ++ L +D+G AGL E +K+
Sbjct: 262 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERKI 320
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 178/360 (49%), Gaps = 55/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G I +TNDG IL ++ +QHPA K +++IA+ QDEE DGT + ++ +GE++
Sbjct: 58 MLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKK 117
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE L +HPT+II Y+ A E + ++ +++ + +D L ++ + +K +
Sbjct: 118 AEDLLYKDVHPTIIISGYKKAEEVALQTIQ-ELAQTVSINDTDLLRKIAMTSLSSKAVAG 176
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ +I + AV V + +D+ V+K GG+I D+ ++ G++++K+V
Sbjct: 177 AREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKK-AGGSINDTQLVYGIVVDKEVV-- 233
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
HP M +R+EN +I L+D
Sbjct: 234 ------------------------------------------HPGMPKRLENAKIALIDA 251
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+LE +K E + I + + K L + I+A ++I +KG
Sbjct: 252 SLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEK--------VDKILATGANVIICQKG 303
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I ++AQ +L K + A+RR +KSD ++ARA G +V+ +E+ E+D+G A L E +KV
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGY-ASLIEERKV 362
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 163/343 (47%), Gaps = 56/343 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G I+++NDG IL+E+ V+HP K ++E+++ QD VGDGTT+ +VL+GE+L
Sbjct: 50 MLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQ 109
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE L +HPTVI YR A+ + I++ +D + L ++ + K G
Sbjct: 110 AETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKS---TDDATLRKIALTALSGKNTGL 166
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+D ++ + AV V G+ +D KV+K GG++ D+ + G++++K+
Sbjct: 167 SNDFLADLVVKAVNAVAEVRDGKTIVDTANI-KVDKKNGGSVNDTQFISGIVIDKEKV-- 223
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
H KM ++N +I L+D
Sbjct: 224 ------------------------------------------HSKMPDVVKNAKIALIDS 241
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
LE KK E + V+I + ++ L N ++ +KG
Sbjct: 242 ALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGAN--------VVLCQKG 293
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEEL 343
I D+AQH+L K I A+RRV+KSD ++A+A GA IV ++L
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDL 336
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 168/350 (48%), Gaps = 56/350 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +TNDG IL + VQHPAGK ++E+A+ QD E+GDGTTSV+++A E+L
Sbjct: 52 MLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKR 111
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A + + +++HPT II +R AL + + + +ST +D + LI + K + +K IG
Sbjct: 112 ANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGA 171
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIK-RYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
SD N+ +DA+ V + S + EI + V K G + +S ++ G LN V
Sbjct: 172 DSDFFSNMVVDALLAVKTQNS-KGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVAS 230
Query: 180 PKMRRRIE--NPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVL 237
M +RI N +I LD L +K V+I ++ P+ +I
Sbjct: 231 QAMPKRIAGGNVKIACLD--LNLQKARMAMGVQI--------NIDDPEQLEQI------- 273
Query: 238 LDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFT 297
+K E+ +E V + II ++ T
Sbjct: 274 -------RKREAGIVLERVKK----------------------------IIDAGAQVVLT 298
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREED 347
KGI DL ++A I +RR +K D RIARA GAT+V+ L E+
Sbjct: 299 TKGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEE 348
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 175/367 (47%), Gaps = 66/367 (17%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G + +TNDG IL+ + V+HPA K + E+A QD+EVGDGTTSV+++A E+L
Sbjct: 38 MLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKN 97
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A++ + ++HPT +I YR A ++ V + + D+ R LI K + +K IG
Sbjct: 98 ADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGI 157
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIK---RYA----KVEKIPGGTIEDSCVLRGVML 173
D N+ +DAV + K DI+ RY V K G + +S ++ G L
Sbjct: 158 NGDFFANLVVDAVLAI-------KYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYAL 210
Query: 174 NKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENP 233
N V M +RI N +I LD +L+ K + + V++V +T P+ +I
Sbjct: 211 NCVVGSQGMPKRIVNAKIACLDFSLQ--KTKMKLGVQVV--------ITDPEKLDQI--- 257
Query: 234 RIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPD 293
++ ES E + + I+A +
Sbjct: 258 -----------RQRESDITKERIQK----------------------------ILATGAN 278
Query: 294 LIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAG 353
+I T GI D+ + ++A A+RRV K D RIA+A GAT+++ L E+ +
Sbjct: 279 VILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASM 338
Query: 354 LFEIKKV 360
L + ++V
Sbjct: 339 LGQAEEV 345
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 133/222 (59%), Gaps = 10/222 (4%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M++D G + +TNDG IL + V H K M+E++++QD+E+GDGTT V+VLAG +L
Sbjct: 38 MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEE 97
Query: 61 AEKFLSDQMHPTVIIKAY----RSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTK 116
AE+ L +HP I Y R A+E + I + S +D + LI+ K +G+K
Sbjct: 98 AEQLLDRGIHPIRIADGYEQAARIAIEHLDKISD---SVLVDMKNTEPLIQTAKTTLGSK 154
Query: 117 FIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
+ IA++AV +TV + R+++D + KVE GG +ED+ +++GV+++KD
Sbjct: 155 VVNSCHRQMAEIAVNAV--LTVADMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKD 211
Query: 177 VTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWR 218
+HP+M +++E+ +I +L C E K +++ +++ + D++
Sbjct: 212 FSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFK 253
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 172/351 (49%), Gaps = 51/351 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+ D G + +TNDG IL+++ V HPA + ++E+++ QD E GDGTTSV+++AG +L+
Sbjct: 39 MIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDS 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
K L +HPT+I ++++ ALE + IL T +S P++ SDR L+ + +K + +
Sbjct: 99 CTKLLQKGIHPTIISESFQKALEKGIEIL-TDMSRPVELSDRETLLNSAATSLNSKVVSQ 157
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+S L +++DAV V ++ + +D++ V+K+ GGTI+D ++ G++L + V +
Sbjct: 158 YSSLLSPMSVDAVMKV-IDPATATSVDLRDIKIVKKL-GGTIDDCELVEGLVLTQKVANS 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+ R+E +I L+ L K + + + SD+ +M R + R +L+
Sbjct: 216 GI-TRVEKAKIGLIQFCLSAPKTDMDNQIVV---SDY------VQMDRVLREERAYILNL 265
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
+ KK CN ++ K L
Sbjct: 266 VKQIKKTG-----------------------------------CNVLLIQKSIL---RDA 287
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTG 351
+SDLA HFL K I ++ + + D I + G V ++ + +G+
Sbjct: 288 LSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSA 338
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 159/348 (45%), Gaps = 58/348 (16%)
Query: 11 MTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMH 70
++NDG IL+ + V HPA K++++I+R QD EVGDGTTSV +LAGE++ A+ FL + +
Sbjct: 62 ISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGIS 121
Query: 71 PTVIIKAYRSALEDMV-NILETKVSTPLDKSDRSKLIE-VIKACVGTKFIGKWSDLACNI 128
+I+K YR A+ V I E V +KS +L+E + + +K I +D +
Sbjct: 122 SHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKM 181
Query: 129 ALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIEN 188
+DAV ++ R ++D K ++KIPGG +E+S + GV K
Sbjct: 182 CVDAVLSLD-----RNDLDDKLIG-IKKIPGGAMEESLFINGVAFKK------------- 222
Query: 189 PRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGE 248
T Y E Q PK + NP+I+ L+ LE K +
Sbjct: 223 --------TFSYAGFEQQ-----------------PK---KFNNPKILSLNVELELKAEK 254
Query: 249 SQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKGISDLAQHF 308
V + + ++ I+ N +++ P I DLA F
Sbjct: 255 DNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLP--------IGDLATQF 306
Query: 309 LLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFE 356
NI RV D NR+ +A G +I + T +++ E +GT A LFE
Sbjct: 307 FADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCA-LFE 353
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 175/359 (48%), Gaps = 52/359 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+L+ P G I +TNDG IL ++ + + K +++++++QD+E+GDGTT V+VLA +L+
Sbjct: 73 ILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQ 132
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILE---TKVSTPLDKSDRSKLIEVIKACVGTKF 117
A + + +HP I + A + ++ LE +S D+ R L+ K +G+K
Sbjct: 133 ALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKI 192
Query: 118 IGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV 177
+ K D +A++AV + V + RK++D K++ GG+I DS ++ GV+L+KD
Sbjct: 193 VSKDHDRFAEMAVEAV--INVMDKDRKDVDFD-LIKMQGRVGGSISDSKLINGVILDKDF 249
Query: 178 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVL 237
+HP+M P+ VL K+G + ++ +
Sbjct: 250 SHPQM------PKCVL------PKEGS--------------------------DGVKLAI 271
Query: 238 LDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFT 297
L C E K +++ ++I + E+ K+ + +D+ D++
Sbjct: 272 LTCPFEPPKPKTKHKLDISSVEEYQKL--------QTYEQDKFKEMIDDVKKAGADVVIC 323
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFE 356
+ G D A H LL+ ++ A+R V + IA + IV R ++L ++ +GT + ++E
Sbjct: 324 QWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYE 382
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 173/357 (48%), Gaps = 51/357 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+ G I +T DGN +L E+ +QHP + ++A QD+ GDGTTS +++ GE+L
Sbjct: 38 MLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQ 97
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILE-TKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
A+ ++S+ +HP +I + + +A E + LE KVS + DR LI+V + + TK
Sbjct: 98 ADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM---DRETLIDVARTSLRTKVHA 154
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
+ +D+ +D++ + ++ + ID+ ++ ++ + D+ ++RG++L+ H
Sbjct: 155 ELADVLTEAVVDSILAIKKQD---EPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARH 210
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
P M++R+E+ I+ + +LEY+K E VN + +S + + E I
Sbjct: 211 PDMKKRVEDAYILTCNVSLEYEKTE-------VNSGFFYKSAEEREKLVKAERKFI---- 259
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEK 299
E KI++ VC D + K ++ +K
Sbjct: 260 ------------------EDRVKKIIE------------LKKKVCGD--SDKGFVVINQK 287
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFE 356
GI + L K I A+RR ++ + R+ ACG +N ++L + + AG++E
Sbjct: 288 GIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYE 344
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 131/220 (59%), Gaps = 8/220 (3%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+ G I+++NDG+ IL+++ + HP + ++E++ QD E GDGTTSV++L G +L
Sbjct: 47 MIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGA 106
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L+ +HPT+I +++SA + V+IL ++ + SDR +L+ + +K + +
Sbjct: 107 AERLLNKGIHPTIIADSFQSAAKRSVDIL-LEMCHKVSLSDREQLVRAASTSLSSKIVSQ 165
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD-VTH 179
+S +A+D+V ++ E S K +D+ V+K+ GGTI+D+ ++ GV+L + +
Sbjct: 166 YSSFLAPLAVDSVLKISDENS--KNVDLNDIRLVKKV-GGTIDDTEMIDGVVLTQTAIKS 222
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRR 219
R E +I L+ + K +++ N+ IVN D+R+
Sbjct: 223 AGGPTRKEKAKIGLIQFQISPPKPDTENNI-IVN--DYRQ 259
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 169/360 (46%), Gaps = 52/360 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D G I +T DG +L E+ +Q P + A QDE GDGTT+V+ L GE+L
Sbjct: 45 MLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQ 104
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
A +F+ + +HP +I + A ++ + L E K+S +DR L++V ++ + TK
Sbjct: 105 AHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDA 164
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
+++ I DAV +V ++ ++ + +++ + + +D+ ++G++L+ H
Sbjct: 165 DLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHL---SPKDTTFIKGLVLDHGGRH 221
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
P M R++N +++L+ +LEY+K E + + +D R + + R+ +
Sbjct: 222 PDMPTRVKNAYVLILNVSLEYEKTEVNSGF-FYSSADQRDKLAASE-RKFV--------- 270
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPD---LIF 296
+A+ KI+ + N++ + PD +I
Sbjct: 271 ------------------DAKLKKIID----------------LKNEVCGMDPDKGFVII 296
Query: 297 TEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFE 356
+KGI ++ K NI A+RR ++ + R+ G N E+L + +G +++
Sbjct: 297 NQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQ 356
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 125/225 (55%), Gaps = 15/225 (6%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+++D G ++NDG IL+ + V HPA K++++IA++QD EVGDGTTSV +LA E L
Sbjct: 39 LIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQ 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKAC----VGTK 116
+ ++ + +HP +II+A+R+A + VN ++ +++ + K D+ + ++++ C + +K
Sbjct: 99 VKPYVEEGLHPQIIIRAFRTATQLAVNKIK-EIAVTVKKEDKVEQRKLLEKCAMTALSSK 157
Query: 117 FIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
I + + +DAV + + K I IK K+ GG +E+S ++ GV K
Sbjct: 158 LISQQKAFFAKMVVDAVMMLD-DLLQLKMIGIK------KVQGGALEESQLVAGVAFKKT 210
Query: 177 VTHPKMR---RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWR 218
++ ++ NP I LL+ LE K + + + D++
Sbjct: 211 FSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQ 255
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 164/353 (46%), Gaps = 57/353 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
++++ +G I++TND +LRE+ + HPA K ++ Q ++GDGT V++LAGE+LNV
Sbjct: 54 IIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNV 113
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
+EK +S + II+ Y A + + L E V DK+D+++L+++IK + +K G
Sbjct: 114 SEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYG 173
Query: 120 KWSDLACNIALDAVQTV--TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV 177
D+ + +AV V +++G +V KI GG++ +S V++G++ N++
Sbjct: 174 S-EDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREP 232
Query: 178 -THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236
H K + ++ + C L+ E++ V + N +
Sbjct: 233 EGHVKSLSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEM------------------- 273
Query: 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIF 296
L++ KGE E + +++ +I + + I
Sbjct: 274 -----LDFSKGE---------EKQIDAMMK-------------------EIADMGVECIV 300
Query: 297 TEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
G+ +LA H+L + I ++ K + R+ R CGAT + R E++G
Sbjct: 301 AGAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELG 353
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 110/198 (55%), Gaps = 14/198 (7%)
Query: 9 IVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQ 68
+++TNDG IL+ I V +PA K +++++R QD+EVGDGTTSV VLA E+L AE ++ +
Sbjct: 48 LMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKK 107
Query: 69 MHPTVIIKAYRSALEDMVN-ILETKVSTPLDKSD-RSKLIEVIKACVGTKFIGKWSDLAC 126
+HP II +R A + +L + V D+ R L+ + + +K + D
Sbjct: 108 IHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFT 167
Query: 127 NIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNK--DVTHPKMRR 184
+A++AV + ++ SG E V K GG++ DS + G +L+K V PK
Sbjct: 168 KLAVEAV--LRLKGSGNLE-----AIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPK--- 217
Query: 185 RIENPRIVLLDCTLEYKK 202
RIEN +I++ + ++ K
Sbjct: 218 RIENAKILIANTGMDTDK 235
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
Query: 10 VMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFL-SDQ 68
++TNDG IL+ I + +PA K ++ I++ QD+EVGDGTTSV VL+ E+L AEK + +
Sbjct: 55 MVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSK 114
Query: 69 MHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKS-DRSKLIEVIKACVGTKFIGKWSDLAC 126
+HP II+ YR A ++ L + V DK+ R LI + K + +K + + D
Sbjct: 115 IHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFA 174
Query: 127 NIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV--THPKMRR 184
+A +A+ + G ++ + ++ KI GG + DS + G +L K PK
Sbjct: 175 ELATNAI----LRLKGSTNLE---HIQIIKILGGKLSDSFLDEGFILAKKFGNNQPK--- 224
Query: 185 RIENPRIVLLDCTLEYKK 202
RIEN +I++ + TL+ K
Sbjct: 225 RIENAKILIANTTLDTDK 242
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 223 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXX 282
HP M +++ +I LLD LE KK E TN+ I + + K L
Sbjct: 12 HPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFL--------AQEENMLRE 63
Query: 283 VCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342
+ + I ++ +++ T+KGI D+AQH+L +A I A+RRV+KSD +++A+A GA+IV+ +E
Sbjct: 64 MVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDE 123
Query: 343 LREEDVGTGAGLFEIK 358
+ D+GT + ++K
Sbjct: 124 ISSSDLGTAERVEQVK 139
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 223 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXX 282
H KM ++N +I L+D LE KK E + V+I + ++ L
Sbjct: 12 HSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKS 71
Query: 283 VCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342
N ++ +KGI D+AQH+L K I A+RRV+KSD ++A+A GA IV ++
Sbjct: 72 GAN--------VVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDD 123
Query: 343 L 343
L
Sbjct: 124 L 124
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 168 LRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNES 215
+ G++++K+ H KM ++N +I L+D LE KK E + V+I + S
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPS 48
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 149/354 (42%), Gaps = 68/354 (19%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+++ + + +TND ILRE+ VQHPA K ++ + Q++EVGDGT V+V AG +L +
Sbjct: 39 MVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLEL 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKV-STPLDKSDRSKLIEVIKACVGTKFIG 119
AE+ L + + +I+ Y A + IL V + + D ++ ++ V +K G
Sbjct: 99 AEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG 158
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNK---- 175
LA IA V +SG +D R V KI G + S VL G++ K
Sbjct: 159 NEVFLAKLIAQACVSIFP--DSGHFNVDNIR---VCKILGSGVHSSSVLHGMVFKKETEG 213
Query: 176 DVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235
DVT +++ +I + C + E++ V I + +
Sbjct: 214 DVT------SVKDAKIAVYSCPFDGMITETKGTVLIKSAEEL------------------ 249
Query: 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLI 295
+ + KGE E + +A+ I +++
Sbjct: 250 ------MNFSKGE-----ENLMDAQVKAIADT-----------------------GANVV 275
Query: 296 FTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
T ++D+A H+ K NI +R K D R+ + GAT + R E++G
Sbjct: 276 VTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMG 329
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 7 GGIVMTNDGNAILREITVQHPA---GKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +TNDG +I +EI ++ P G ++ E+A+ D+ GDGTT+ VLA ++
Sbjct: 44 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 103
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWS 122
+ ++ +P + + A+E + ET + + + ++ G + IG
Sbjct: 104 RNVAAGANPLGLKRGIEKAVE---KVTETLLKGAKEVETKEQIAATAAISAGDQSIG--- 157
Query: 123 DLACNIALDAVQT---VTVEES 141
DL A+D V +TVEES
Sbjct: 158 DLIAE-AMDKVGNEGVITVEES 178
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 7 GGIVMTNDGNAILREITVQHPA---GKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +TNDG +I +EI ++ P G ++ E+A+ D+ GDGTT+ VLA ++
Sbjct: 2 GAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGL 61
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWS 122
+ ++ +P + + A+E + ET + + + ++ G + IG
Sbjct: 62 RNVAAGANPLGLKRGIEKAVE---KVTETLLKGAKEVETKEQIAATAAISAGDQSIG--- 115
Query: 123 DLACNIALDAV---QTVTVEES 141
DL A+D V +TVEES
Sbjct: 116 DLIAE-AMDKVGNEGVITVEES 136
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 11 MTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLS 66
+T DG ++ +EI + G M+ E+A ++E GDGTT+ VLA ++ K ++
Sbjct: 49 ITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVA 108
Query: 67 DQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKW 121
M+P + + A +V +++ + P++ S + I A G FIG+
Sbjct: 109 AGMNPMDLKRGIDVATAKVVEAIKS-AARPVNDSSEVAQVGTISAN-GESFIGQQ 161
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 103 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 130
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 103 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 130
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 103 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 130
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 103 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 130
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 44 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 103
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 104 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 131
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 103 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 130
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 44 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 103
Query: 62 EKFLSDQMHPT----VIIKAYRSALEDM 85
K ++ M+P I KA +A+E++
Sbjct: 104 LKAVAAGMNPMDLKRGIDKAVTAAVEEL 131
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 103 LKAVAAGMNP 112
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 103 LKAVAAGMNP 112
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 103 LKAVAAGMNP 112
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 103 LKAVAAGMNP 112
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 103 LKAVAAGMNP 112
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 44 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 103
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 104 LKAVAAGMNP 113
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 MGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVA 61
G +T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 43 FGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEG 102
Query: 62 EKFLSDQMHP 71
K ++ M+P
Sbjct: 103 LKAVAAGMNP 112
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQ----HPAGKSMIEIARTQDEEVGDGTTSVIVLAGE 56
+L G +T DG + +E+ ++ + + + E+A ++ GDGTT+ VLA
Sbjct: 38 VLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQA 97
Query: 57 MLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTK 116
++ K ++ +P + + A+E V ++ ++ P++ DR + EV
Sbjct: 98 IVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKA-LAIPVE--DRKAIEEVATISANDP 154
Query: 117 FIGKW-SDLACNIALDAVQTVTVEESGRKEIDIK 149
+GK +D + + + +TVEES E ++K
Sbjct: 155 EVGKLIADAMEKVGKEGI--ITVEESKSLETELK 186
>pdb|3B64|A Chain A, Macrophage Migration Inhibitory Factor (Mif) From
LEISHMANIA MAJOR
Length = 112
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 88 ILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDL 124
+++T VSTPLD R L +V +A V +GK DL
Sbjct: 2 VIQTFVSTPLDHHKRENLAQVYRA-VTRDVLGKPEDL 37
>pdb|2WAQ|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|I Chain I, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|K Chain K, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
Length = 95
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 205 SQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
S T+V + E ++RR V +RRR+ N +I+LL
Sbjct: 57 SSTDVISIAEEEFRRGVLPITIRRRLPNGKIILL 90
>pdb|2PMZ|K Chain K, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|W Chain W, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|K Chain K, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|U Chain U, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 95
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 205 SQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
S T+V + E ++RR V +RRR+ N +I+LL
Sbjct: 57 SSTDVISIAEEEFRRGVLPITIRRRLPNGKIILL 90
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 27 PAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMV 86
PA + +++ + QD VG+ T V + E+L E+F + + P ++KA++S + +
Sbjct: 133 PAFEKVLK-SHGQDYLVGNRLTRVDIHLLEVLLYVEEFDASLLTPFPLLKAFKSRISSLP 191
Query: 87 NI 88
N+
Sbjct: 192 NV 193
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 27 PAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMV 86
PA + +++ + QD VG+ T V + E+L E+F + + P ++KA++S + +
Sbjct: 133 PAFEKVLK-SHGQDYLVGNRLTRVDIHLLEVLLYVEEFDASLLTPFPLLKAFKSRISSLP 191
Query: 87 NI 88
N+
Sbjct: 192 NV 193
>pdb|3FWU|A Chain A, Crystal Structure Of Leishmania Major Mif1
Length = 133
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 88 ILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDL 124
+++T VSTPLD R L +V +A V +GK DL
Sbjct: 23 VIQTFVSTPLDHHKRENLAQVYRA-VTRDVLGKPEDL 58
>pdb|2BX6|A Chain A, Crystal Structure Of The Human Retinitis Pigmentosa
Protein 2 (Rp2)
Length = 350
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 19 LREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQM 69
L+ + V A +S++ I+R Q ++ D + V++ AG+ + L D+M
Sbjct: 207 LKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEM 257
>pdb|3BH6|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
pdb|3BH7|B Chain B, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 352
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 19 LREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQM 69
L+ + V A +S++ I+R Q ++ D + V++ AG+ + L D+M
Sbjct: 209 LKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIANARKLIDEM 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,574,924
Number of Sequences: 62578
Number of extensions: 354617
Number of successful extensions: 890
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 106
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)