Query psy2832
Match_columns 362
No_of_seqs 163 out of 1778
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:02:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02344 chap_CCT_gamma T-com 100.0 1.3E-56 2.7E-61 450.8 33.7 309 1-362 44-353 (525)
2 TIGR02339 thermosome_arch ther 100.0 1.3E-55 2.7E-60 443.0 34.3 307 1-362 44-352 (519)
3 TIGR02343 chap_CCT_epsi T-comp 100.0 5.4E-55 1.2E-59 438.4 33.3 305 1-362 55-361 (532)
4 cd03343 cpn60 cpn60 chaperonin 100.0 1.1E-54 2.3E-59 436.6 34.4 307 1-362 43-349 (517)
5 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.4E-54 2.9E-59 435.9 33.9 304 1-361 51-356 (526)
6 TIGR02342 chap_CCT_delta T-com 100.0 3.7E-54 7.9E-59 431.7 34.4 306 1-362 37-348 (517)
7 cd03335 TCP1_alpha TCP-1 (CTT 100.0 4.1E-54 9E-59 432.5 34.6 307 1-362 36-350 (527)
8 TIGR02347 chap_CCT_zeta T-comp 100.0 1.1E-53 2.3E-58 428.2 35.2 304 1-362 44-358 (531)
9 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.3E-53 7.2E-58 425.8 34.5 301 1-362 44-351 (522)
10 TIGR02340 chap_CCT_alpha T-com 100.0 6.9E-53 1.5E-57 424.2 35.1 307 1-362 40-354 (536)
11 cd03338 TCP1_delta TCP-1 (CTT 100.0 6.9E-53 1.5E-57 423.1 34.6 306 1-362 36-347 (515)
12 PTZ00212 T-complex protein 1 s 100.0 1.3E-52 2.8E-57 421.7 34.9 300 1-362 50-358 (533)
13 cd03336 TCP1_beta TCP-1 (CTT o 100.0 2.3E-52 5E-57 418.7 34.8 300 1-362 41-346 (517)
14 KOG0361|consensus 100.0 1.5E-53 3.2E-58 388.2 20.6 304 1-362 48-355 (543)
15 KOG0364|consensus 100.0 9E-54 2E-58 395.1 18.4 307 1-362 47-353 (527)
16 TIGR02346 chap_CCT_theta T-com 100.0 1.2E-51 2.5E-56 414.2 34.6 302 1-362 46-349 (531)
17 KOG0358|consensus 100.0 1.5E-53 3.2E-58 387.6 18.8 302 1-358 54-360 (534)
18 TIGR02345 chap_CCT_eta T-compl 100.0 7E-52 1.5E-56 415.6 33.0 301 1-362 46-352 (522)
19 TIGR02341 chap_CCT_beta T-comp 100.0 2.9E-51 6.2E-56 410.3 34.8 300 1-362 42-347 (519)
20 cd03337 TCP1_gamma TCP-1 (CTT 100.0 3.3E-51 7.1E-56 406.9 27.5 268 1-362 44-312 (480)
21 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.4E-49 3.1E-54 395.3 30.5 275 1-362 40-315 (484)
22 KOG0360|consensus 100.0 2.2E-50 4.9E-55 375.8 18.7 308 1-362 47-361 (545)
23 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.6E-47 3.4E-52 383.1 30.1 299 1-362 17-315 (485)
24 cd00309 chaperonin_type_I_II c 100.0 7.7E-47 1.7E-51 375.3 29.1 263 1-362 36-298 (464)
25 COG0459 GroL Chaperonin GroEL 100.0 1.1E-46 2.3E-51 373.3 28.9 300 1-362 39-344 (524)
26 KOG0363|consensus 100.0 1.9E-47 4.2E-52 346.2 21.4 295 6-362 53-351 (527)
27 cd03341 TCP1_theta TCP-1 (CTT 100.0 3.6E-46 7.7E-51 370.1 28.9 264 1-362 36-301 (472)
28 KOG0362|consensus 100.0 9.5E-44 2.1E-48 333.5 25.7 297 1-362 54-352 (537)
29 PRK12849 groEL chaperonin GroE 100.0 5.3E-42 1.1E-46 343.7 28.6 268 1-359 38-326 (542)
30 PRK00013 groEL chaperonin GroE 100.0 6.8E-42 1.5E-46 342.9 28.8 269 1-359 38-326 (542)
31 PRK12851 groEL chaperonin GroE 100.0 1.8E-41 3.8E-46 340.2 29.4 269 1-359 39-327 (541)
32 PTZ00114 Heat shock protein 60 100.0 1.7E-41 3.6E-46 341.6 29.2 268 1-359 50-339 (555)
33 TIGR02348 GroEL chaperonin Gro 100.0 2.2E-41 4.7E-46 338.9 28.8 268 1-359 37-325 (524)
34 cd03344 GroEL GroEL_like type 100.0 2.8E-41 6.1E-46 337.5 29.3 268 1-359 36-324 (520)
35 KOG0359|consensus 100.0 9.2E-43 2E-47 321.7 14.4 301 1-362 45-349 (520)
36 PRK12850 groEL chaperonin GroE 100.0 9.1E-41 2E-45 335.2 29.7 269 1-359 39-327 (544)
37 PRK12852 groEL chaperonin GroE 100.0 5.2E-40 1.1E-44 330.4 28.7 268 1-359 39-327 (545)
38 PLN03167 Chaperonin-60 beta su 100.0 1E-39 2.2E-44 329.4 28.4 267 1-359 94-381 (600)
39 CHL00093 groEL chaperonin GroE 100.0 1.3E-39 2.8E-44 326.5 27.6 269 1-358 38-326 (529)
40 PRK14104 chaperonin GroEL; Pro 100.0 1.2E-38 2.6E-43 319.8 27.9 266 1-357 39-325 (546)
41 cd03334 Fab1_TCP TCP-1 like do 100.0 1.8E-27 3.9E-32 218.4 21.1 186 117-362 15-201 (261)
42 cd03333 chaperonin_like chaper 99.9 7.1E-22 1.5E-26 176.2 16.2 161 103-362 2-162 (209)
43 KOG0357|consensus 99.9 7.1E-23 1.5E-27 184.9 5.6 170 1-362 56-225 (400)
44 KOG0356|consensus 99.7 2.9E-16 6.3E-21 150.9 20.5 264 5-359 56-341 (550)
45 KOG0230|consensus 99.6 1.3E-15 2.9E-20 159.9 13.6 181 119-359 331-511 (1598)
46 KOG0364|consensus 99.3 1.3E-13 2.8E-18 129.1 -4.6 212 104-354 102-325 (527)
47 KOG0360|consensus 99.2 6.8E-14 1.5E-18 132.1 -7.7 205 108-344 110-318 (545)
48 KOG0358|consensus 99.2 1.7E-13 3.6E-18 126.4 -9.6 207 104-346 109-329 (534)
49 TIGR02343 chap_CCT_epsi T-comp 99.1 8.9E-13 1.9E-17 133.2 -10.5 198 112-346 122-326 (532)
50 cd03334 Fab1_TCP TCP-1 like do 99.1 1.6E-11 3.5E-16 112.9 -1.5 122 190-346 43-165 (261)
51 TIGR02339 thermosome_arch ther 99.0 3.9E-12 8.5E-17 128.4 -8.3 197 112-346 111-317 (519)
52 cd03339 TCP1_epsilon TCP-1 (CT 99.0 1.2E-12 2.6E-17 132.2 -12.2 199 111-346 117-322 (526)
53 TIGR02344 chap_CCT_gamma T-com 99.0 2E-12 4.4E-17 130.6 -12.3 201 111-347 110-318 (525)
54 cd03335 TCP1_alpha TCP-1 (CTT 98.9 1.9E-12 4.1E-17 130.9 -13.4 200 111-346 102-309 (527)
55 TIGR02342 chap_CCT_delta T-com 98.9 6.8E-12 1.5E-16 126.5 -9.7 203 111-346 103-313 (517)
56 cd03343 cpn60 cpn60 chaperonin 98.9 7.8E-12 1.7E-16 126.2 -9.8 198 112-345 110-313 (517)
57 PTZ00212 T-complex protein 1 s 98.9 2.4E-11 5.2E-16 122.9 -8.2 195 111-346 121-323 (533)
58 KOG0361|consensus 98.9 1.2E-11 2.6E-16 114.4 -10.0 212 102-345 101-319 (543)
59 TIGR02340 chap_CCT_alpha T-com 98.8 1.1E-11 2.5E-16 125.4 -11.8 199 111-345 106-312 (536)
60 cd03336 TCP1_beta TCP-1 (CTT o 98.8 5.3E-11 1.2E-15 120.0 -7.2 195 111-346 109-311 (517)
61 COG0459 GroL Chaperonin GroEL 98.8 2.2E-10 4.8E-15 114.6 -2.9 207 112-356 106-319 (524)
62 KOG0363|consensus 98.8 4.2E-11 9.1E-16 110.2 -7.7 202 104-342 103-312 (527)
63 TIGR02347 chap_CCT_zeta T-comp 98.8 1.2E-11 2.6E-16 124.8 -12.5 197 112-345 111-322 (531)
64 cd03340 TCP1_eta TCP-1 (CTT or 98.8 7E-11 1.5E-15 119.4 -9.5 196 111-345 110-315 (522)
65 cd03338 TCP1_delta TCP-1 (CTT 98.8 1E-10 2.3E-15 118.0 -8.3 198 112-346 103-312 (515)
66 TIGR02345 chap_CCT_eta T-compl 98.7 7.6E-11 1.7E-15 119.0 -9.4 196 110-344 110-315 (522)
67 TIGR02341 chap_CCT_beta T-comp 98.7 8.3E-11 1.8E-15 118.6 -12.0 196 111-347 110-313 (519)
68 TIGR02346 chap_CCT_theta T-com 98.6 3.3E-10 7.2E-15 114.5 -10.3 193 109-344 110-312 (531)
69 cd03337 TCP1_gamma TCP-1 (CTT 98.0 3.1E-07 6.6E-12 92.0 -3.8 159 111-346 110-276 (480)
70 cd03342 TCP1_zeta TCP-1 (CTT o 98.0 2.5E-07 5.4E-12 92.7 -4.7 166 112-346 107-280 (484)
71 PF00118 Cpn60_TCP1: TCP-1/cpn 97.9 5.2E-09 1.1E-13 105.0 -18.5 191 109-343 81-277 (485)
72 cd00309 chaperonin_type_I_II c 97.7 4.3E-06 9.4E-11 83.5 -1.2 116 111-240 102-226 (464)
73 KOG0359|consensus 97.6 4E-07 8.6E-12 86.0 -10.0 211 103-353 99-321 (520)
74 cd03333 chaperonin_like chaper 97.5 4.3E-05 9.3E-10 68.0 1.6 48 193-240 43-90 (209)
75 PRK00013 groEL chaperonin GroE 96.8 0.00027 5.9E-09 71.8 -0.5 103 104-227 97-204 (542)
76 cd03341 TCP1_theta TCP-1 (CTT 96.7 0.00023 4.9E-09 71.3 -1.8 156 111-346 102-266 (472)
77 PRK12849 groEL chaperonin GroE 96.5 0.00081 1.7E-08 68.4 0.3 102 104-227 97-204 (542)
78 cd03344 GroEL GroEL_like type 96.4 0.0009 2E-08 67.8 0.0 102 104-227 95-202 (520)
79 TIGR02348 GroEL chaperonin Gro 96.3 0.00082 1.8E-08 68.1 -0.8 102 104-227 96-203 (524)
80 PLN03167 Chaperonin-60 beta su 96.2 0.00078 1.7E-08 69.2 -1.6 92 113-227 166-259 (600)
81 PTZ00114 Heat shock protein 60 96.2 0.00082 1.8E-08 68.6 -1.5 94 113-227 122-216 (555)
82 PRK12851 groEL chaperonin GroE 95.8 0.0019 4E-08 65.8 -0.8 93 113-226 111-204 (541)
83 PRK12850 groEL chaperonin GroE 95.5 0.0042 9E-08 63.3 0.3 104 104-228 98-206 (544)
84 CHL00093 groEL chaperonin GroE 95.3 0.0036 7.7E-08 63.6 -0.7 93 113-226 110-203 (529)
85 PRK12852 groEL chaperonin GroE 94.9 0.0089 1.9E-07 61.0 0.7 101 104-226 98-204 (545)
86 KOG0362|consensus 94.7 0.001 2.2E-08 64.5 -6.3 202 102-344 107-315 (537)
87 PRK14104 chaperonin GroEL; Pro 91.2 0.084 1.8E-06 53.9 1.0 101 104-226 98-204 (546)
88 KOG0230|consensus 85.1 0.28 6E-06 54.2 0.1 112 197-344 365-477 (1598)
89 PF02579 Nitro_FeMo-Co: Dinitr 74.7 16 0.00034 27.3 6.9 44 285-329 47-90 (94)
90 COG1433 Uncharacterized conser 70.5 25 0.00054 28.3 7.2 48 283-331 57-104 (121)
91 cd00851 MTH1175 This uncharact 61.6 32 0.00069 26.1 6.2 36 285-321 57-92 (103)
92 cd00562 NifX_NifB This CD repr 58.6 38 0.00083 25.5 6.2 37 284-321 54-90 (102)
93 cd00852 NifB NifB belongs to a 41.7 88 0.0019 24.0 5.8 31 290-321 64-94 (106)
94 cd00853 NifX NifX belongs to a 41.6 94 0.002 23.7 5.9 31 290-321 60-90 (102)
95 TIGR02663 nifX nitrogen fixati 40.6 47 0.001 26.4 4.1 48 290-338 62-113 (119)
96 PF08708 PriCT_1: Primase C te 40.2 1.3E+02 0.0028 21.2 7.4 53 56-114 15-67 (71)
97 PF12554 MOZART1: Mitotic-spin 35.1 60 0.0013 21.5 3.2 22 56-77 22-43 (48)
98 COG1504 Uncharacterized conser 30.2 2.8E+02 0.006 22.0 7.3 50 285-334 55-110 (121)
99 cd01143 YvrC Periplasmic bindi 24.0 2.9E+02 0.0062 23.2 6.7 51 284-334 53-110 (195)
100 PF02796 HTH_7: Helix-turn-hel 23.8 95 0.0021 19.8 2.7 33 58-90 11-43 (45)
101 TIGR03859 PQQ_PqqD coenzyme PQ 23.3 1.8E+02 0.0039 21.3 4.5 40 2-41 20-59 (81)
102 PRK09534 btuF corrinoid ABC tr 22.2 2.8E+02 0.0062 26.6 6.8 51 284-334 112-169 (359)
103 cd01144 BtuF Cobalamin binding 21.9 3.1E+02 0.0068 24.1 6.7 52 284-335 50-108 (245)
104 TIGR03659 IsdE heme ABC transp 21.7 2.8E+02 0.0062 25.4 6.6 52 284-335 84-141 (289)
105 COG4359 Uncharacterized conser 20.9 2.4E+02 0.0052 24.7 5.2 44 279-322 77-124 (220)
106 PF04719 TAFII28: hTAFII28-lik 20.3 1.7E+02 0.0037 22.2 3.8 29 52-80 56-89 (90)
107 KOG0991|consensus 20.0 4.3E+02 0.0094 24.2 6.8 55 16-84 228-284 (333)
No 1
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-56 Score=450.82 Aligned_cols=309 Identities=74% Similarity=1.192 Sum_probs=284.8
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus 44 ~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~ 123 (525)
T TIGR02344 44 MLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKK 123 (525)
T ss_pred eEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhcccc-CCccccccccceeEEEcCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEE-SGRKEIDIKRYAKVEKIPG 159 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~-~~~~~~d~~~~i~i~ki~g 159 (362)
|.+.++++|+ +++++++..+.+.|+++|+|++++|...+|.+.+++++++|+..+.++. .+...+|+.+++.+.++.|
T Consensus 124 a~~~~~~~L~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~G 202 (525)
T TIGR02344 124 ALDDALSVLE-EISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPG 202 (525)
T ss_pred HHHHHHHHHH-HhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecC
Confidence 9999999999 9999998878899999999999999999999999999999999997543 1223566666688999999
Q ss_pred CCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 160 ~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
++++||++++|+++++++.++.|++.++||+|++++++++
T Consensus 203 g~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le---------------------------------------- 242 (525)
T TIGR02344 203 GDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLE---------------------------------------- 242 (525)
T ss_pred CChHhcCcccceEEecccCCCCCccccCCCCEEEEecccc----------------------------------------
Confidence 9999999999999999877777777777777777777777
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR 319 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~ 319 (362)
+.+++.++.+.+.+++++.++...|++ +++++++++.+.++++|+++++++++++++|.++||+++++
T Consensus 243 ----~~~~~~~~~i~i~~~~~~~~~l~~E~~--------~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~ 310 (525)
T TIGR02344 243 ----YKKGESQTNVEIMKEEDWNRILQMEEE--------YVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRR 310 (525)
T ss_pred ----cccccccceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEec
Confidence 667777789999999999999988887 99999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 320 VRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 320 v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++.+++|||++|||.++++++.++++.+|++|+.|+++++|+
T Consensus 311 v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~ 353 (525)
T TIGR02344 311 VRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD 353 (525)
T ss_pred CCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC
Confidence 9999999999999999999999999999999789999988774
No 2
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.3e-55 Score=442.99 Aligned_cols=307 Identities=41% Similarity=0.692 Sum_probs=282.9
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++|+++||+++.+|+++|+||..|++||+.
T Consensus 44 ~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~ 123 (519)
T TIGR02339 44 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRK 123 (519)
T ss_pred eeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccc-cchHHHHHHHHHHHHhhhcccc-CCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFI-GKWSDLACNIALDAVQTVTVEE-SGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i-~~~~~~~~~l~~~ai~~i~~~~-~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ +++++++..+++.|+++|++++++|++ ..+.+.+++++++|+..+.... ++...+|++ .+++.++.
T Consensus 124 a~~~~~~~L~-~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~ 201 (519)
T TIGR02339 124 AAEKALEIID-EIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLD-NIKIEKKT 201 (519)
T ss_pred HHHHHHHHHH-HhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHH-HeEEEEcc
Confidence 9999999999 999999877789999999999999999 6889999999999999986421 232235554 48899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|+++++|++++|+++++++.+++|++.++||+|++++++++
T Consensus 202 Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le--------------------------------------- 242 (519)
T TIGR02339 202 GGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLE--------------------------------------- 242 (519)
T ss_pred CcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEecccc---------------------------------------
Confidence 99999999999999999888877777777777777777777
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+++++..+.+.+++.+++.++...|++ +++++++++.+.++++|+++++|++.++++|.++||.+++
T Consensus 243 -----~~~~~~~~~~~i~~~~~~~~~l~~E~~--------~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~ 309 (519)
T TIGR02339 243 -----VEKTEIDAKIRITDPDQIKKFLDQEEA--------MLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVR 309 (519)
T ss_pred -----ccccccceEEEECCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEe
Confidence 777888889999999999999988888 9999999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++++.+++|||++||+.++++++.++++.+|+ |+.+++.++|+
T Consensus 310 ~v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~ 352 (519)
T TIGR02339 310 RVKKSDIEKLARATGAKIVSSIKEITESDLGY-AGLVEERKVGD 352 (519)
T ss_pred cCCHHHHHHHHHHhCCEEeCchhhCChhhccC-CceEEEEEECC
Confidence 99999999999999999999999999999999 79999998874
No 3
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.4e-55 Score=438.41 Aligned_cols=305 Identities=34% Similarity=0.595 Sum_probs=279.6
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus 55 mI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~ 134 (532)
T TIGR02343 55 MLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEV 134 (532)
T ss_pred EEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCC--cCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETKVSTPLD--KSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~--~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ +++++++ ..+++.|.++|++++++|+...+.+.+++++++++..+..... ..+|++ .+++.++.
T Consensus 135 a~~~~~~~L~-~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~--~~~d~~-~I~i~ki~ 210 (532)
T TIGR02343 135 AARVAVEHLE-EISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMER--RDVDFD-LIKVEGKV 210 (532)
T ss_pred HHHHHHHHHH-HhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCC--CcCCHH-HeeEEEec
Confidence 9999999999 8998874 3468899999999999998888899999999999998753211 235554 48999999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|+++++|++++|+++++++.++.|++.+++++|++++++++
T Consensus 211 Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le--------------------------------------- 251 (532)
T TIGR02343 211 GGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFE--------------------------------------- 251 (532)
T ss_pred CCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecc---------------------------------------
Confidence 99999999999999999988888888777888888888777
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+++++....+.+++++++.++...|++ +++++++++.+.++++|+++++|++.++++|.++||.+++
T Consensus 252 -----~~~~~~~~~~~i~~~~~~~~~~~~E~~--------~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~ 318 (532)
T TIGR02343 252 -----PPKPKTKHKLDISSVEEYKKLQKYEQQ--------KFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVR 318 (532)
T ss_pred -----ccccccceeEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEE
Confidence 666777778889999999999988887 9999999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++++.+++|||++|||.++++++.++++.+|+ |+.++++.+|+
T Consensus 319 ~~~~~~l~~Ia~~tGa~~i~~l~~~~~~~LG~-a~~v~~~~ig~ 361 (532)
T TIGR02343 319 WVGGHELELIAIATGGRIVPRFEELSEDKLGK-AGLVREISFGT 361 (532)
T ss_pred cCCHHHHHHHHHHhCCEEecccccCCHhHCcc-cceEEEEEecC
Confidence 99999999999999999999999999999999 79999888774
No 4
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.1e-54 Score=436.55 Aligned_cols=307 Identities=41% Similarity=0.704 Sum_probs=283.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++|++++.+++++|+||..|++||++
T Consensus 43 ~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~ 122 (517)
T cd03343 43 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRL 122 (517)
T ss_pred eeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|++.++++|+ .++.+++..+++.+.++|++++++|.+..+.+.+++++++|+..+..+..+...+|++ ++.+.++.|+
T Consensus 123 a~~~~~~~L~-~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~-~I~i~k~~Gg 200 (517)
T cd03343 123 AAEKALELLD-EIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLD-NIKIEKKTGG 200 (517)
T ss_pred HHHHHHHHHH-HhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHH-HeeEEeecCc
Confidence 9999999999 9999998778999999999999999999999999999999999886432222345654 5889999999
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
++++|++++|+++++++.++.|++.++||+|++++++++
T Consensus 201 s~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le----------------------------------------- 239 (517)
T cd03343 201 SVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLE----------------------------------------- 239 (517)
T ss_pred CHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecccc-----------------------------------------
Confidence 999999999999999988888877677777777777777
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRV 320 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v 320 (362)
+++++.++.+.+++.+++.++...|++ +++++++++.+.++++|+++++|++.|+++|.++||++++++
T Consensus 240 ---~~k~~~~~~~~i~s~~~~~~~~~~E~~--------~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v 308 (517)
T cd03343 240 ---VKKTEIDAKIRITSPDQLQAFLEQEEA--------MLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRV 308 (517)
T ss_pred ---CCccccceeEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeC
Confidence 777888889999999999999988888 999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 321 RKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 321 ~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++++++|||++||+.++++++.++++.+|+ |+.+++.++|+
T Consensus 309 ~~~~l~~Ia~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~ig~ 349 (517)
T cd03343 309 KKSDMEKLARATGAKIVTNIDDLTPEDLGE-AELVEERKVGD 349 (517)
T ss_pred CHHHHHHHHHHhCCEEecchhhCChhhCCc-cceEEEEEECC
Confidence 999999999999999999999999999999 79999998874
No 5
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-54 Score=435.93 Aligned_cols=304 Identities=32% Similarity=0.583 Sum_probs=278.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus 51 mi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~ 130 (526)
T cd03339 51 ILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQ 130 (526)
T ss_pred EEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCc--CCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETKVSTPLDK--SDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~--~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ +++.+++. .+++.|+++|++++++|....+.+.+++++++++..+..... ..+|++ .+++.++.
T Consensus 131 a~~~~~~~L~-~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~--~~~d~~-~I~i~ki~ 206 (526)
T cd03339 131 ACKIAVEHLE-EIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLER--KDVNFE-LIKVEGKV 206 (526)
T ss_pred HHHHHHHHHH-HhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCC--CccchH-HeEEEEec
Confidence 9999999999 88888753 468899999999999998888899999999999988753221 233433 48899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|++++||++++|+++++++.+++|++.++|++|++++++++
T Consensus 207 Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le--------------------------------------- 247 (526)
T cd03339 207 GGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFE--------------------------------------- 247 (526)
T ss_pred CcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEeccc---------------------------------------
Confidence 99999999999999999998888888777888888888877
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
++++++..++.+++++++.++...|++ ++++.++++.+.++++|+++++|++.|+++|.++||.+++
T Consensus 248 -----~~~~~~~~~~~i~s~~~~~~~~~~E~~--------~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~ 314 (526)
T cd03339 248 -----PPKPKTKHKLDITSVEDYKKLQEYEQK--------YFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVR 314 (526)
T ss_pred -----CCccccceEEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEE
Confidence 566666778889999999999988888 9999999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVK 361 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~ 361 (362)
+++..+++|||++||+.+++++++++++.+|+ |+.|+++.+|
T Consensus 315 ~v~~~~LerIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig 356 (526)
T cd03339 315 WVGGVEIELIAIATGGRIVPRFEDLSPEKLGK-AGLVREISFG 356 (526)
T ss_pred eCCHHHHHHHHHHhCCEEecchhhCChhhccc-CceEEEEEec
Confidence 99999999999999999999999999999999 7999988877
No 6
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.7e-54 Score=431.67 Aligned_cols=306 Identities=30% Similarity=0.539 Sum_probs=277.2
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||||+++||++||++|.+|+++|+||+.|++||++
T Consensus 37 mi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~ 116 (517)
T TIGR02342 37 MIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQI 116 (517)
T ss_pred EEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|++.++++|+ ++++|++..+++.|.++|+|++++|.+..+.+.+++++++|+..+..+.. ...+|.+ .+++.++.|+
T Consensus 117 a~~~~~~~L~-~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~-~~~~~~~-~i~i~k~~Gg 193 (517)
T TIGR02342 117 AADEAIKILD-EMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPEN-DKNVDLN-DIKVVKKLGG 193 (517)
T ss_pred HHHHHHHHHH-HhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhcccc-CCccCHH-HeeEEeccCC
Confidence 9999999999 99999987789999999999999999999999999999999998864211 1245554 4889999999
Q ss_pred CcccceeEeceeeccccCC-ccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 161 TIEDSCVLRGVMLNKDVTH-PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~-~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
++++|++++|+++++++.+ ++||+.+.|++|++++++++
T Consensus 194 s~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le---------------------------------------- 233 (517)
T TIGR02342 194 TIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQIS---------------------------------------- 233 (517)
T ss_pred ChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCC----------------------------------------
Confidence 9999999999999998876 36666666666666666666
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCC-----CHHHHHHHHhCCC
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGI-----SDLAQHFLLKANI 314 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi-----~~~~~~~l~~~~I 314 (362)
+++++...++.+.+++++.++...|++ +++++++.+.+.++++|+++++| +++++++|.++||
T Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~E~~--------~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I 301 (517)
T TIGR02342 234 ----PPKTDMENQVIVNDYAQMDRVLKEERK--------YILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKI 301 (517)
T ss_pred ----CCcccccceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCc
Confidence 666677778888899999999888777 99999999999999999999998 9999999999999
Q ss_pred eEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 315 TAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 315 ~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
.+++++++.+++|||++|||.++++++.++++++|+ |+.++++++|+
T Consensus 302 ~av~~v~~~~LerIa~~tGa~ii~~~~~l~~~~LG~-~~~v~~~~~~~ 348 (517)
T TIGR02342 302 MVVKDIEREEVEFICKTIGCKPIASIDHFTADKLGS-AELVEEVTTDG 348 (517)
T ss_pred eEEecCCHHHHHHHHHHHCCEEEcchhhcCcccCcC-CceEEEEEECC
Confidence 999999999999999999999999999999999999 79999777764
No 7
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.1e-54 Score=432.51 Aligned_cols=307 Identities=34% Similarity=0.549 Sum_probs=277.6
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+||+++|+++||+|+|++++|++|++++||||||++|||++||++|.+|+++|+||+.|++||+.
T Consensus 36 mi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~ 115 (527)
T cd03335 36 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRL 115 (527)
T ss_pred EEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhcc-ccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETK-VSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTV-EESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~-~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~-~~~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ + ++++++..+++.|+++|+|++++|.+..+.+.+++++++|+..+.. +..+...+|.+ .+++.++.
T Consensus 116 a~~~~~~~L~-~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~-~I~i~~~~ 193 (527)
T cd03335 116 ACKEAVKYIK-EHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIK-AVNILKAH 193 (527)
T ss_pred HHHHHHHHHH-HhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHH-HeEEEEec
Confidence 9999999999 6 8999987789999999999999999988889999999999998843 22222234554 48899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|+++.+|++++|+++++++.+++|++.++||+|++++++++
T Consensus 194 Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le--------------------------------------- 234 (527)
T cd03335 194 GKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQ--------------------------------------- 234 (527)
T ss_pred CcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCC---------------------------------------
Confidence 99999999999999999888888887777888888888877
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+.+++..+.+.++++.++..+...|++ +++++++++.+.++++|+++++|++.|+++|.++||++++
T Consensus 235 -----~~~~~~~~~~~~~~~~~le~~~~~E~~--------~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~ 301 (527)
T cd03335 235 -----KTKMKLGVQVVVTDPEKLEKIRQRESD--------ITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVR 301 (527)
T ss_pred -----CCccccceeEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEE
Confidence 556666778899999999999888877 9999999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCC------CCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELR------EEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~------~~~lG~~~~~~~~~~~~~ 362 (362)
++++.+++|||++|||.+++++..++ ++.+|+ |+.++++++|+
T Consensus 302 ~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~ 350 (527)
T cd03335 302 RVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGE-AEEVVQERIGD 350 (527)
T ss_pred eCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCcc-CceEEEEEECC
Confidence 99999999999999999999987653 347999 79999888874
No 8
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-53 Score=428.22 Aligned_cols=304 Identities=31% Similarity=0.566 Sum_probs=277.5
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus 44 mi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~ 123 (531)
T TIGR02347 44 MLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEI 123 (531)
T ss_pred EEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCC-CcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCC
Q psy2832 81 ALEDMVNILETKVSTPL-DKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPG 159 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v-~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g 159 (362)
|++.++++|+ +++.++ +..+++.|.++|++++++|.+..+.+.+++++++|+..+..+ +. .+|.+ .+.+.++.|
T Consensus 124 a~~~~~~~L~-~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~--~~-~i~~~-~I~i~k~~g 198 (531)
T TIGR02347 124 ARGELLEFLD-KFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKD--GE-QIDLF-MVEIMEMKH 198 (531)
T ss_pred HHHHHHHHHH-HhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhc--CC-CCChh-HeEEEEecC
Confidence 9999999999 888776 356889999999999999999999999999999999998642 11 34544 377889999
Q ss_pred CCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 160 ~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
+++.+|++++|+++++++.++.|++.+.|++|++++++++
T Consensus 199 ~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le---------------------------------------- 238 (531)
T TIGR02347 199 KSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLE---------------------------------------- 238 (531)
T ss_pred CCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCC----------------------------------------
Confidence 9999999999999999998888887777788888888777
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-------Cc---EEEeCCCCCHHHHHHH
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALK-------PD---LIFTEKGISDLAQHFL 309 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~-------v~---~I~~~~gi~~~~~~~l 309 (362)
+.+++....+.+.+++++..+...|++ ++++++++|+..+ ++ +|++++||++.+++||
T Consensus 239 ----~~~~~~~~~~~~~~~~~~~~~~~~E~~--------~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L 306 (531)
T TIGR02347 239 ----YEKTEVNSGFFYSNAEQREKLVEAERK--------FVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLL 306 (531)
T ss_pred ----CCccccCceEEEcCHHHHHHHHHHHHH--------HHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHH
Confidence 666777789999999999999998888 9999999999865 26 9999999999999999
Q ss_pred HhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 310 LKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 310 ~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
.++||++++++++.+++|||++||+.++.+++.++++.+|+ |+.+++..+|+
T Consensus 307 ~~~~I~~i~rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~-~~~v~~~~ig~ 358 (531)
T TIGR02347 307 AKEGIMALRRAKRRNMERLTLACGGEALNSVEDLTPECLGW-AGLVYETSIGE 358 (531)
T ss_pred HHCCceEEccCCHHHHHHHHHHhCCEEecccccCCcccccc-ceEEEEEEECC
Confidence 99999999999999999999999999999999999999999 79998888874
No 9
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-53 Score=425.77 Aligned_cols=301 Identities=31% Similarity=0.592 Sum_probs=271.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus 44 mi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~ 123 (522)
T cd03340 44 LIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRK 123 (522)
T ss_pred EEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcC----CHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 81 ALEDMVNILETKVSTPLDKS----DRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~----~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
|++.++++|+ +++++++.. +++.|.++|++++++|.+..+.+.+++++++|+..+..+ .|. +++++.+
T Consensus 124 a~~~~~~~L~-~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~------~~~-~~I~i~~ 195 (522)
T cd03340 124 ALQLAIEKIK-EIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDD------LDL-DMIGIKK 195 (522)
T ss_pred HHHHHHHHHH-HhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhccc------CCh-hHheEee
Confidence 9999999999 899888653 377899999999999999999999999999999988532 232 2478999
Q ss_pred cCCCCcccceeEeceeeccccCCccC---cccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCc
Q psy2832 157 IPGGTIEDSCVLRGVMLNKDVTHPKM---RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENP 233 (362)
Q Consensus 157 i~g~s~~dS~lv~Giv~~~~~~~~~m---~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ 233 (362)
+.|+++.+|++++|+++++++.++.| ++.++||+|++++++++
T Consensus 196 i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le---------------------------------- 241 (522)
T cd03340 196 VPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELE---------------------------------- 241 (522)
T ss_pred ecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCC----------------------------------
Confidence 99999999999999999998876543 45555555555555555
Q ss_pred ceeeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCC
Q psy2832 234 RIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKAN 313 (362)
Q Consensus 234 ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~ 313 (362)
+.+++.+..+.++++.++.++...|++ ++.++++.+.+.++++|+++++|++.+++||.++|
T Consensus 242 ----------~~~~~~~~~i~i~~~~~~~~~~~~E~~--------~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~ 303 (522)
T cd03340 242 ----------LKAEKDNAEVRVEDPEEYQAIVDAEWK--------IIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD 303 (522)
T ss_pred ----------CCccccceEEEECCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC
Confidence 666677778888999999998888877 99999999999999999999999999999999999
Q ss_pred CeEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 314 ITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 314 I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
|+++++++..+++|||++|||.+++++++++++.+|+ |+.|++.++|+
T Consensus 304 I~~~~~v~~~~l~rIa~~tGa~ii~~l~~l~~~~LG~-~~~v~~~~ig~ 351 (522)
T cd03340 304 IFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGT-CGLFEERQVGG 351 (522)
T ss_pred cEEEEeCCHHHHHHHHHHHCCEEeeccccCCcccccc-ceEEEEEEECC
Confidence 9999999999999999999999999999999999999 79999888763
No 10
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.9e-53 Score=424.19 Aligned_cols=307 Identities=33% Similarity=0.549 Sum_probs=276.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+||+++|+++||+|+|+++++++|++++||||||++|||++||++|.+|+++|+||+.|++||+.
T Consensus 40 ~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~ 119 (536)
T TIGR02340 40 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRL 119 (536)
T ss_pred EEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhcc-ccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETK-VSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTV-EESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~-~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~-~~~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ + ++++++..+++.++++|++++++|.+..+.+.+++++++|+..+.. +..+...+|++ .+++.++.
T Consensus 120 a~~~~~~~L~-~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~-~I~i~k~~ 197 (536)
T TIGR02340 120 ACKEAVKYIK-ENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIK-AVNILKAH 197 (536)
T ss_pred HHHHHHHHHH-HhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchH-HeEEEEec
Confidence 9999999999 6 5889987788999999999999999999999999999999998853 22232234554 48899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|+++.+|++++|+++++++.+++|++.++||+|++++++++
T Consensus 198 G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~--------------------------------------- 238 (536)
T TIGR02340 198 GGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQ--------------------------------------- 238 (536)
T ss_pred CCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCC---------------------------------------
Confidence 99999999999999999888888887778888888888877
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+.+++..+.+.++++.++..+...|++ .+.+.+++|.+.++++|++++|+++.+++||.++||.+++
T Consensus 239 -----~~~~~~~~~~~~~~~~~le~~~~~E~~--------~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~ 305 (536)
T TIGR02340 239 -----KQKMALGVQIVVDDPAKLEGIRQREAD--------ITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVR 305 (536)
T ss_pred -----CCcccCceeEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEe
Confidence 556666678889999999999877766 8899999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCC------CCCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEEL------REEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~------~~~~lG~~~~~~~~~~~~~ 362 (362)
++++++++|||++|||.+++++..+ ++..+|+ |+.++++++|+
T Consensus 306 rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~-~~~v~~~~ig~ 354 (536)
T TIGR02340 306 RCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGF-ADEVVEERIAD 354 (536)
T ss_pred cCCHHHHHHHHHHhCCEEecchhhcCcccccccccccc-CceEEEEEECC
Confidence 9999999999999999999998655 3445999 89999988874
No 11
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.9e-53 Score=423.09 Aligned_cols=306 Identities=33% Similarity=0.561 Sum_probs=277.8
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++||++|++++.+++++|+||..|++||+.
T Consensus 36 ~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~ 115 (515)
T cd03338 36 MIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQI 115 (515)
T ss_pred eeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|++.++++|+ +++.+++..+++.|.++|++++++|.+..|.+.+++++++|+..+..+.. ...+|++ .+.+.++.|+
T Consensus 116 a~~~~~~~L~-~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~-~~~~d~~-~i~i~~~~Gg 192 (515)
T cd03338 116 AAKKAVEILD-SMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPAT-ATNVDLK-DIRIVKKLGG 192 (515)
T ss_pred HHHHHHHHHH-HhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccc-cCcCCHH-HeEEEEecCC
Confidence 9999999999 99999987788999999999999999999999999999999999865321 1245654 4788899999
Q ss_pred CcccceeEeceeeccccCCcc-CcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPK-MRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~-m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
++++|++++|+++++++.++. ||+.+.|+++++++++++
T Consensus 193 s~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le---------------------------------------- 232 (515)
T cd03338 193 TIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLS---------------------------------------- 232 (515)
T ss_pred ChhhceeeeeEEEeccccCcCCCCccccCCcEEEEecccc----------------------------------------
Confidence 999999999999999888765 366666777777777776
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCC-----CHHHHHHHHhCCC
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGI-----SDLAQHFLLKANI 314 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi-----~~~~~~~l~~~~I 314 (362)
+++++...++.+++.+++.++...|++ +++..++.+.+.++++|+++++| +++++++|.++||
T Consensus 233 ----~~~~~~~~~~~i~~~~~~~~~~~~E~~--------~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I 300 (515)
T cd03338 233 ----PPKTDMDNNIVVNDYAQMDRILREERK--------YILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKI 300 (515)
T ss_pred ----ccccccCceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCc
Confidence 666666678888888899999888877 99999999999999999999987 8999999999999
Q ss_pred eEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 315 TAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 315 ~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
.+++++++.+++|||++||+++++++++++++.+|+ |+.|++.++|+
T Consensus 301 ~av~~~~~~~LerIa~~tGa~ii~sl~~l~~~~LG~-~~~v~~~~~g~ 347 (515)
T cd03338 301 MVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGS-ADLVEEVSLGD 347 (515)
T ss_pred eEEecCCHHHHHHHHHHHCCEEecccccCCHhhCCC-CceEEEEEECC
Confidence 999999999999999999999999999999999999 79999998863
No 12
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.3e-52 Score=421.68 Aligned_cols=300 Identities=29% Similarity=0.472 Sum_probs=271.1
Q ss_pred CccCC-----CCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHH
Q psy2832 1 MLMDP-----MGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVII 75 (362)
Q Consensus 1 m~~~~-----~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii 75 (362)
||+++ .|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|+
T Consensus 50 mi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii 129 (533)
T PTZ00212 50 ILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTII 129 (533)
T ss_pred EeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 67787 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCC---HHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccce
Q psy2832 76 KAYRSALEDMVNILETKVSTPLDKSD---RSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYA 152 (362)
Q Consensus 76 ~g~~~a~~~~~~~l~~~~~~~v~~~~---~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i 152 (362)
+||++|++.++++|+ +++.+++..+ ++.|+++|+|++++|....+.+.+++++++++..+... +|++ .+
T Consensus 130 ~g~~~a~~~~~~~L~-~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~------~~~~-~I 201 (533)
T PTZ00212 130 EGWRMALDVARKALE-EIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGS------GNLD-YI 201 (533)
T ss_pred HHHHHHHHHHHHHHH-HhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhcc------CCcc-ce
Confidence 999999999999999 8999886543 67899999999999998889999999999999887432 2332 37
Q ss_pred eEEEcCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccC
Q psy2832 153 KVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIEN 232 (362)
Q Consensus 153 ~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~ 232 (362)
.+.++.|+++.+|++++|+++++++.+ .|++.++||+|++++++++
T Consensus 202 ~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le--------------------------------- 247 (533)
T PTZ00212 202 QIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMD--------------------------------- 247 (533)
T ss_pred EEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCC---------------------------------
Confidence 899999999999999999999987654 4677777777777777777
Q ss_pred cceeeeccccccccccc-ceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHh
Q psy2832 233 PRIVLLDCTLEYKKGES-QTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLK 311 (362)
Q Consensus 233 ~ki~~~~~~~~~~k~~~-~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~ 311 (362)
+++++. ++.+.+++.+++..+...|++ +++++++.|++.++++++++++|++.++++|.+
T Consensus 248 -----------~~k~~~~~~~~~i~~~~~~~~l~~~E~~--------~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~ 308 (533)
T PTZ00212 248 -----------TDKIKIYGAKVKVDSMEKVAEIEAAEKE--------KMKNKVDKILAHGCNVFINRQLIYNYPEQLFAE 308 (533)
T ss_pred -----------CCcccccCceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHH
Confidence 556665 667888899988888877777 999999999999999999999999999999999
Q ss_pred CCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 312 ANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 312 ~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+||+++++++..+++|||++||+.++++++.++++.+|+ |+.|++..+|+
T Consensus 309 ~~I~avr~v~~~~l~rIa~~tGa~iis~l~~~~~~~LG~-~~~v~~~~ig~ 358 (533)
T PTZ00212 309 AGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGH-CDLIEEIMIGE 358 (533)
T ss_pred CCCEEEecCCHHHHHHHHHHhCCEEeecCCCCCHHHccC-CceEEEEEECC
Confidence 999999999999999999999999999999999999999 79999888774
No 13
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.3e-52 Score=418.66 Aligned_cols=300 Identities=27% Similarity=0.426 Sum_probs=270.7
Q ss_pred CccCC--CCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy2832 1 MLMDP--MGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAY 78 (362)
Q Consensus 1 m~~~~--~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~ 78 (362)
||+++ .|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||
T Consensus 41 mi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~ 120 (517)
T cd03336 41 ILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGY 120 (517)
T ss_pred EeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 78888 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcC---CHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEE
Q psy2832 79 RSALEDMVNILETKVSTPLDKS---DRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVE 155 (362)
Q Consensus 79 ~~a~~~~~~~l~~~~~~~v~~~---~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ 155 (362)
+.|.+.++++|+ +++++++.. +++.|+++|+|++++|.+..+.+.+++++++|+..+.. .+|.+ .+.+.
T Consensus 121 ~~a~~~~~~~L~-~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~------~~~~~-~i~i~ 192 (517)
T cd03336 121 RMATAAAREALL-SSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKG------SGNLD-AIQII 192 (517)
T ss_pred HHHHHHHHHHHH-HhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhc------cCCcc-ceeEE
Confidence 999999999999 899888532 36789999999999999999999999999999998842 12332 47899
Q ss_pred EcCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 156 KIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 156 ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
++.|+++++|++++|+++++++.+ .|++.++||+|++++++++
T Consensus 193 ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le------------------------------------ 235 (517)
T cd03336 193 KKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMD------------------------------------ 235 (517)
T ss_pred EccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCC------------------------------------
Confidence 999999999999999999987644 3566677777777777777
Q ss_pred eeeccccccccccc-ceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC
Q psy2832 236 VLLDCTLEYKKGES-QTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI 314 (362)
Q Consensus 236 ~~~~~~~~~~k~~~-~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I 314 (362)
+++++. ++++.+++.+++..+...|++ +++++++.|++.++++++++++|++.+++||.++||
T Consensus 236 --------~~~~~~~~~~~~~~~~~~~~~l~~~E~~--------~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I 299 (517)
T cd03336 236 --------TDKIKIFGAKVRVDSTAKVAEIEEAEKE--------KMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGI 299 (517)
T ss_pred --------cccccccCceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCc
Confidence 666665 668888999999888877777 999999999999999999999999999999999999
Q ss_pred eEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 315 TAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 315 ~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++++++..+++|||++||+.++++++.++++.+|+ |+.+++..+|+
T Consensus 300 ~av~~v~~~~L~rIa~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~ 346 (517)
T cd03336 300 MAIEHADFDGVERLALVTGGEIASTFDHPELVKLGT-CKLIEEIMIGE 346 (517)
T ss_pred EEEecCCHHHHHHHHHHhCCEEecccCCCCcccccc-cceEEEEEECC
Confidence 999999999999999999999999999999999999 79999888874
No 14
>KOG0361|consensus
Probab=100.00 E-value=1.5e-53 Score=388.22 Aligned_cols=304 Identities=32% Similarity=0.567 Sum_probs=271.3
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||++..|+++|||||+||||-|++-||+||.|++++++||.++|||||+||+||+|+|+++..+++.|+||+.|+.+|++
T Consensus 48 Livd~~g~~tIsNDGATIlKlldivhPaaktlVdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rk 127 (543)
T KOG0361|consen 48 LIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRK 127 (543)
T ss_pred eeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCC----HHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 81 ALEDMVNILETKVSTPLDKSD----RSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~----~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
|...|++.++ ++++.++.++ ++-|.++|.|++++|.|.+..+++++++++|+..+.. ..| .+.+-++|
T Consensus 128 a~~l~v~ki~-elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~------~l~-~~mIGIKK 199 (543)
T KOG0361|consen 128 ARQLAVEKIK-ELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDN------DLD-LNMIGIKK 199 (543)
T ss_pred HHHHHHHHHH-HheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhcc------ccc-hhhcceee
Confidence 9999999999 9999887655 6678899999999999999999999999999987631 111 12355666
Q ss_pred cCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCccee
Q psy2832 157 IPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236 (362)
Q Consensus 157 i~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~ 236 (362)
++|+++.||.+++|+.|.+.|...+ +.+.|+++.||||+
T Consensus 200 V~GG~~~dS~lv~GVAFkKtFsYAG-----------------------------------------fEqqPKk~~NpkIl 238 (543)
T KOG0361|consen 200 VPGGAMEDSLLVNGVAFKKTFSYAG-----------------------------------------FEQQPKKFLNPKIL 238 (543)
T ss_pred cCCCccchhhhccceeeeehccccc-----------------------------------------hhhCccccCCceEE
Confidence 6666666666666666655443211 12348888888999
Q ss_pred eecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeE
Q psy2832 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITA 316 (362)
Q Consensus 237 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~ 316 (362)
|+|.++|.+.++.++++.+.+.+++..+...||. .+.+..+++...++|+|++.-.|.|+|.+||..++|.+
T Consensus 239 ~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~--------Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFC 310 (543)
T KOG0361|consen 239 LLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWN--------IIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFC 310 (543)
T ss_pred EEeeeeeecccccCceeecCCHHHHHHHHhHHHH--------HHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCcee
Confidence 9998888999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 317 IRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 317 i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
..||+.+++.|+..+||+.+..++.++.++.+|+ |..||++++|+
T Consensus 311 AGRV~~eDl~Rv~~acGGsi~tt~~~i~~~~LG~-C~~FeE~QvG~ 355 (543)
T KOG0361|consen 311 AGRVPEEDLNRVMQACGGSIQTTVSDIKEEVLGT-CALFEERQVGG 355 (543)
T ss_pred cCcCCHHHHHHHHHhcCcchhhhhhhcchhhcch-hhhHHHHhhcc
Confidence 9999999999999999999999999999999999 89999999985
No 15
>KOG0364|consensus
Probab=100.00 E-value=9e-54 Score=395.05 Aligned_cols=307 Identities=76% Similarity=1.168 Sum_probs=285.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
|+.++.|.++.||||-.||+++++.||+|+-+.+++.+||+++|||||++++|++|+|.++..++++|+||..|++.|.+
T Consensus 47 mlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~ 126 (527)
T KOG0364|consen 47 MLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIK 126 (527)
T ss_pred HhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|+..+++.++ .+++++|.+|...++.+.++++.+|+++.|.+.++.++.+|++.+..+ .++ .+|+.++.++.|++|+
T Consensus 127 aled~~~~~~-~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~-~g~-e~dik~y~kveKvpgg 203 (527)
T KOG0364|consen 127 ALEDNIRALD-KISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVE-NGR-EIDIKRYAKVEKVPGG 203 (527)
T ss_pred HHHHHHHHHH-hhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhc-cCc-eechhhhccccccCcc
Confidence 9999999999 999999999999999999999999999999999999999999999876 344 6888888999999999
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
.+.+|.+++|+.+++++.||.|.+.++||++.++++|++
T Consensus 204 ~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Le----------------------------------------- 242 (527)
T KOG0364|consen 204 LLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLE----------------------------------------- 242 (527)
T ss_pred cccccceecceeeccccCcHHHHHHhhcCcEEEecCCcc-----------------------------------------
Confidence 999999999998888776665655555555555555555
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRV 320 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v 320 (362)
|+|+++++.+++...+++.++++.|++ +++.+++.++..+||+|++.+|++++|++||.+.||+.++++
T Consensus 243 ---ykkGeSqtnve~~~eed~~r~Lqieee--------~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~ 311 (527)
T KOG0364|consen 243 ---YKKGESQTNVEIVKEEDFTRILQIEEE--------QVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRL 311 (527)
T ss_pred ---CCCCccccceeeeechhHHHHHHhhHH--------HHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhh
Confidence 777777889999999999999988887 999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 321 RKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 321 ~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++.+..|++++||+.++++.+++.+.++|++|+.|+++++|+
T Consensus 312 rKtDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gd 353 (527)
T KOG0364|consen 312 RKTDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGD 353 (527)
T ss_pred hccccchhhhhcCceeccChhhCchhccCcccceeeeeccCc
Confidence 999999999999999999999999999999999999999996
No 16
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-51 Score=414.22 Aligned_cols=302 Identities=30% Similarity=0.517 Sum_probs=272.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+||+++|+++||+|+|+++++++|++++||||||+||||++||++|++++++|+||+.|++||+.
T Consensus 46 mi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~ 125 (531)
T TIGR02346 46 MVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQ 125 (531)
T ss_pred EEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCC-CC-CcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETKVST-PL-DKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~~~~-~v-~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ ++++ ++ +..+++.+.++++|++++|.+.. .+.+++++++|+..+..+.. ..+|++ .+.+.++.
T Consensus 126 a~~~~~~~L~-~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~-~~~ls~l~~~Ai~~v~~~~~--~~~~~~-~I~i~ki~ 200 (531)
T TIGR02346 126 ALKKAMEVLE-ELVVWEVEDVRNKKELIKALKASISSKQYGN-EDFLAQLVAKACSTVMPKNP--ENFNVD-NIRVSKIM 200 (531)
T ss_pred HHHHHHHHHH-HhccccCCCCCCHHHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHhhcCC--CcCChh-HeeEEEec
Confidence 9999999999 8886 77 44578899999999999999877 89999999999999864321 245554 48899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|+++++|++++|+++++++. .|++.++|++|++++++++
T Consensus 201 G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~--------------------------------------- 239 (531)
T TIGR02346 201 GGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLD--------------------------------------- 239 (531)
T ss_pred CCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcC---------------------------------------
Confidence 99999999999999998743 3566666777777777766
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+++++....+.++++.++.++...|++ +++++++.+.+.++++|++++++++.++++|.+.||.+++
T Consensus 240 -----~~~~~~~~~~~~~~~~~l~~~~~~e~~--------~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~ 306 (531)
T TIGR02346 240 -----TATTETKGTVLIHNAEELLNYSKGEEN--------QIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLK 306 (531)
T ss_pred -----CCcccCceEEEECCHHHHHHHHHHHHH--------HHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEe
Confidence 666776778999999999988877766 9999999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++..++++||++||+.+++++++++++++|+ |+.+++.++|+
T Consensus 307 ~~~~~~l~~Ia~~tGa~ii~~l~~~~~~~LG~-a~~v~~~~ig~ 349 (531)
T TIGR02346 307 IPSKFELRRLCKTVGATPLARLGAPQPEEIGY-VDSVYVSEIGG 349 (531)
T ss_pred cCCHHHHHHHHHHHCCEEecccccCCHhHccc-cceEEEEEECC
Confidence 99999999999999999999999999999999 79999998874
No 17
>KOG0358|consensus
Probab=100.00 E-value=1.5e-53 Score=387.57 Aligned_cols=302 Identities=33% Similarity=0.585 Sum_probs=275.3
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+...|+++|||||+|||++|++-||+|+||++++..||.++|||||++|+||++||+.|.+|+++|+||..|.+.|+.
T Consensus 54 MIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~ 133 (534)
T KOG0358|consen 54 MIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQS 133 (534)
T ss_pred HhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|.+.++++|+ +++.|++.+|++.|.+-|.|++++|+.+++...++.++++|+.++..+. ...+.|+.+ +++.|-.|+
T Consensus 134 a~~~~v~il~-~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~-~~~nvdlkd-IkivkklGg 210 (534)
T KOG0358|consen 134 AAKKAVDILD-EMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPE-NATNVDLKD-IKIVKKLGG 210 (534)
T ss_pred HHHHHHHHHH-hcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcc-cccccchhh-hhhHHhhCC
Confidence 9999999999 9999999999999999999999999999999999999999999885322 123456554 777777899
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
+++|+++++|+++.+..... .-|+++|++||.+++|
T Consensus 211 tvdDte~i~glvl~~~~~~~--------------------------------------------~gptriekAkIglIQF 246 (534)
T KOG0358|consen 211 TVDDTELIKGLVLTQKASKS--------------------------------------------AGPTRIEKAKIGLIQF 246 (534)
T ss_pred ccchhhhhcceEEeeecccC--------------------------------------------CCcchhhhceeeEEEE
Confidence 99999999999998643211 1356777888888888
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCC-----CHHHHHHHHhCCCe
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGI-----SDLAQHFLLKANIT 315 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi-----~~~~~~~l~~~~I~ 315 (362)
-++++|+.+...+-++++.++.+++..|+. |+.+++++|.+.++|+++.|++| +|+|+|||.+.+|+
T Consensus 247 ~iS~PKtdmen~iiv~DyaqMdrilkeER~--------YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkim 318 (534)
T KOG0358|consen 247 QISPPKTDMENQIIVNDYAQMDRILKEERQ--------YILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIM 318 (534)
T ss_pred EecCCCCCcccceEecCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEE
Confidence 888999999999999999999999998887 99999999999999999999874 89999999999999
Q ss_pred EEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEE
Q psy2832 316 AIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIK 358 (362)
Q Consensus 316 ~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~ 358 (362)
+++.+.+++++++++.+|+.++.+++.++++.+|+ +..+|+.
T Consensus 319 vikdieRediefick~l~c~Pia~id~f~~d~Lg~-adlveE~ 360 (534)
T KOG0358|consen 319 VIKDIEREDIEFICKTLGCKPIADIDHFTADKLGS-ADLVEET 360 (534)
T ss_pred EEccccHhhHHHHHhhcCCeecchhhhcChhhcCc-chhhhhc
Confidence 99999999999999999999999999999999999 6777765
No 18
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7e-52 Score=415.64 Aligned_cols=301 Identities=30% Similarity=0.591 Sum_probs=270.0
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.| ++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus 46 ~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~ 124 (522)
T TIGR02345 46 LIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYRE 124 (522)
T ss_pred EEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHH
Confidence 7888889 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCc---CCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEc
Q psy2832 81 ALEDMVNILETKVSTPLDK---SDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKI 157 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~---~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki 157 (362)
|++.++++|+ ++++|++. .+++.+.++|++++++|.+..+.+.+++++++|+..+..+ .+|.+ ++.+.++
T Consensus 125 a~~~~~~~L~-~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~-----~~~~~-~I~i~ki 197 (522)
T TIGR02345 125 ALMLAIEKLK-EIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDID-----DLDLK-LIGVKKV 197 (522)
T ss_pred HHHHHHHHHH-HhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhc-----cCChh-HheEEee
Confidence 9999999999 89988863 2567899999999999999999999999999999988532 23433 4788999
Q ss_pred CCCCcccceeEeceeeccccCCccC---cccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcc
Q psy2832 158 PGGTIEDSCVLRGVMLNKDVTHPKM---RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPR 234 (362)
Q Consensus 158 ~g~s~~dS~lv~Giv~~~~~~~~~m---~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~k 234 (362)
.|+++.+|.+++|+++++++.++.| ++.++||+|++.+++++
T Consensus 198 ~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le----------------------------------- 242 (522)
T TIGR02345 198 QGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELE----------------------------------- 242 (522)
T ss_pred cCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcc-----------------------------------
Confidence 9999999999999999998876644 45555566666555555
Q ss_pred eeeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC
Q psy2832 235 IVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI 314 (362)
Q Consensus 235 i~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I 314 (362)
+.+++.+..+.+.+.+++.++...|++ .++++++++.+.++++|++++++++.+++||.+.||
T Consensus 243 ---------~~~~~~~~~i~~~~~~~~~~~~~~e~~--------~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I 305 (522)
T TIGR02345 243 ---------LKAEKDNAEIRVEDVEDYQAIVDAEWA--------IIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNI 305 (522)
T ss_pred ---------cCccccceEEEECCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCc
Confidence 556666667888899999999888877 999999999999999999999999999999999999
Q ss_pred eEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 315 TAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 315 ~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++++++..+++|++++||+.++++++.++++.+|+ |+.|+++++|+
T Consensus 306 ~~~~~v~~~dl~ria~~tga~ii~~~~~l~~~~LG~-~~~ie~~~~~~ 352 (522)
T TIGR02345 306 FCAGRVSDEDLKRVVKACGGSIQSTTSDLEADVLGT-CALFEERQIGS 352 (522)
T ss_pred EEEecCCHHHHHHHHHHhCCeEEcchhhCChhhccC-CceEEEEEECC
Confidence 999999999999999999999999999999999999 79999888764
No 19
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-51 Score=410.34 Aligned_cols=300 Identities=27% Similarity=0.440 Sum_probs=269.6
Q ss_pred CccCCC--CCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Q psy2832 1 MLMDPM--GGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAY 78 (362)
Q Consensus 1 m~~~~~--g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~ 78 (362)
||+++. |+++|||||+|||++|+++||+|+|++++|++|++++||||||++|||++||++|.+|+++|+||+.|++||
T Consensus 42 mI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~ 121 (519)
T TIGR02341 42 ILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGY 121 (519)
T ss_pred EEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 788885 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcC---CHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEE
Q psy2832 79 RSALEDMVNILETKVSTPLDKS---DRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVE 155 (362)
Q Consensus 79 ~~a~~~~~~~l~~~~~~~v~~~---~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ 155 (362)
+.|.+.++++|+ +++++++.. +++.|.++|+|++++|....+.+.+++++++++..+... .|.+ .+++.
T Consensus 122 ~~a~~~~~~~L~-~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~------~~~~-~i~i~ 193 (519)
T TIGR02341 122 RRATKAAQEALK-KSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGS------GNLD-AIQII 193 (519)
T ss_pred HHHHHHHHHHHH-HhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccC------CChh-heEEE
Confidence 999999999999 899988532 468899999999999998889999999999999887421 1232 37889
Q ss_pred EcCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 156 KIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 156 ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
++.|+++++|++++|+++++.+.+ .|++.++||+|++++++++
T Consensus 194 k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le------------------------------------ 236 (519)
T TIGR02341 194 KKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMD------------------------------------ 236 (519)
T ss_pred EccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCC------------------------------------
Confidence 999999999999999999987654 4666677777777777777
Q ss_pred eeeccccccccccc-ceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC
Q psy2832 236 VLLDCTLEYKKGES-QTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI 314 (362)
Q Consensus 236 ~~~~~~~~~~k~~~-~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I 314 (362)
+++++. ++.+.+++.+++..+...|++ +++++++.|++.++++++++++|++.++++|.++||
T Consensus 237 --------~~~~~~~~~~~~~~~~~~~~~l~~~e~~--------~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I 300 (519)
T TIGR02341 237 --------TDKVKVFGSRVRVDSTAKVAELEAAEKE--------KMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGV 300 (519)
T ss_pred --------CCccccCCceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCc
Confidence 556665 667888888888888877777 999999999999999999999999999999999999
Q ss_pred eEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 315 TAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 315 ~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++++++..+++|||++||+.++++++.++++.+|+ |+.+++..+|+
T Consensus 301 ~~v~~~~~~~l~~ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~ig~ 347 (519)
T TIGR02341 301 MAIEHADFEGIERLALVTGGEIVSTFDHPELVKLGS-CDLIEEIMIGE 347 (519)
T ss_pred EEEecCCHHHHHHHHHHhCCEEecccccCCcccccc-CceEEEEEECC
Confidence 999999999999999999999999999999999999 79999888874
No 20
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-51 Score=406.88 Aligned_cols=268 Identities=78% Similarity=1.211 Sum_probs=245.5
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++|+++||++|.+|+++|+||+.|++||++
T Consensus 44 mi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~ 123 (480)
T cd03337 44 MLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRK 123 (480)
T ss_pred EeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCc-cccccccceeEEEcCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGR-KEIDIKRYAKVEKIPG 159 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~-~~~d~~~~i~i~ki~g 159 (362)
|++.++++|+ +++++++..|++.|.++++|++++|.+..|.+.+++++++|+..+.++..+. +.+|+.+++++.+++|
T Consensus 124 a~~~~~~~L~-~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~G 202 (480)
T cd03337 124 ALEDALKILE-EISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPG 202 (480)
T ss_pred HHHHHHHHHH-HhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecC
Confidence 9999999999 8999998888999999999999999999999999999999999997643222 2466666688999999
Q ss_pred CCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 160 ~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
+++++|++++|+++++++.++.|++.++||+|++++++++
T Consensus 203 gs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le---------------------------------------- 242 (480)
T cd03337 203 GEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLE---------------------------------------- 242 (480)
T ss_pred CCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcc----------------------------------------
Confidence 9999999999999999887777777666777766666555
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR 319 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~ 319 (362)
+ +|+++++|++.++++|.++||+++++
T Consensus 243 ---------------------------------------~--------------lvi~~k~I~d~al~~L~~~~I~~v~~ 269 (480)
T cd03337 243 ---------------------------------------Y--------------LVITEKGVSDLAQHYLVKAGITALRR 269 (480)
T ss_pred ---------------------------------------e--------------EEEeCCCccHHHHHHHHHCCcEEEEe
Confidence 2 99999999999999999999999999
Q ss_pred CChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 320 VRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 320 v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++.+++|||++|||.++++++.++++.+|+||+.++++++|+
T Consensus 270 v~~~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~ 312 (480)
T cd03337 270 VRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGD 312 (480)
T ss_pred CCHHHHHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCC
Confidence 9999999999999999999999999999999889999887763
No 21
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-49 Score=395.26 Aligned_cols=275 Identities=31% Similarity=0.554 Sum_probs=247.7
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||||+++||++||++|.+++++|+||..|++||++
T Consensus 40 mi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~ 119 (484)
T cd03342 40 MLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFEL 119 (484)
T ss_pred EEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCc-CCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCC
Q psy2832 81 ALEDMVNILETKVSTPLDK-SDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPG 159 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~-~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g 159 (362)
|++.++++|+ +++.+++. .+++.+.++|++++++|.+..|.+.+++++++|+..+..+. ..+|.+ .+++.++.|
T Consensus 120 a~~~~~~~L~-~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~---~~~~~~-~I~i~ki~g 194 (484)
T cd03342 120 AKNKALKFLE-SFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPD---EPIDLH-MVEIMQMQH 194 (484)
T ss_pred HHHHHHHHHH-HhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcC---CccChh-HeEEEEecC
Confidence 9999999999 89988865 47889999999999999999999999999999999986432 145554 488999999
Q ss_pred CCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 160 ~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
+++++|++++|+++++++.++.|++.++||+|++++++++
T Consensus 195 gs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le---------------------------------------- 234 (484)
T cd03342 195 KSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLE---------------------------------------- 234 (484)
T ss_pred CChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCC----------------------------------------
Confidence 9999999999999999998888888888888888888888
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR 319 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~ 319 (362)
+.+++....+. .++|+++++|++.++++|.++||+++++
T Consensus 235 ----~~~~~~~~~~~-------------------------------------~~lvi~~~~I~~~al~~l~~~~I~av~~ 273 (484)
T cd03342 235 ----YEKTEVNSGFF-------------------------------------YSVVINQKGIDPPSLDMLAKEGILALRR 273 (484)
T ss_pred ----CCccccCcEEE-------------------------------------EEEEEeCCCccHHHHHHHHHCCCeEEEe
Confidence 33333222221 1299999999999999999999999999
Q ss_pred CChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 320 VRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 320 v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+++++++|||++|||.+++++++++++.+|+ |+.++++.+|+
T Consensus 274 ~~~~~l~~ia~~tGa~ii~~l~~~~~~~LG~-~~~v~~~~ig~ 315 (484)
T cd03342 274 AKRRNMERLTLACGGVAMNSVDDLSPECLGY-AGLVYERTLGE 315 (484)
T ss_pred CCHHHHHHHHHHhCCEEecccccCChhhCcc-cceEEEEEECC
Confidence 9999999999999999999999999999999 79998888874
No 22
>KOG0360|consensus
Probab=100.00 E-value=2.2e-50 Score=375.78 Aligned_cols=308 Identities=33% Similarity=0.518 Sum_probs=267.9
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
|++++.|.+++||||+|||+.|.++||++|+|++.++.|++++|||||+++++|++||+++.+|+..++||..+++||+.
T Consensus 47 mlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ 126 (545)
T KOG0360|consen 47 MLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRL 126 (545)
T ss_pred hccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccc-cCCccccccccceeEEEcCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVE-ESGRKEIDIKRYAKVEKIPG 159 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~-~~~~~~~d~~~~i~i~ki~g 159 (362)
|+..+++++...++.|++...+..|.++++|++++|+|....+++++++++++..+... .++.-...+ +.+.+.|..|
T Consensus 127 ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi-~~vnILkahG 205 (545)
T KOG0360|consen 127 ACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPI-NSVNILKAHG 205 (545)
T ss_pred HHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccc-cceeEEecCC
Confidence 99999999986689999998999999999999999999999999999999999877432 222212222 2356777777
Q ss_pred CCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 160 ~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
.+..+|.+++|+.++....+ ..||++++++||||+|
T Consensus 206 ~s~~eS~l~~GyaLnc~~as--------------------------------------------q~m~~~i~~~Kiacld 241 (545)
T KOG0360|consen 206 KSQIESMLLPGYALNCSVAS--------------------------------------------QMMPLRIKNAKIACLD 241 (545)
T ss_pred ccchhheeecceeeeccHhh--------------------------------------------hccccccccceeeeEe
Confidence 77767777777777654433 3456667777777777
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR 319 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~ 319 (362)
|+++..|.+++..+.+.+|+.+.+++..|.. ..++.+++|+..++|+|++++||||.++.||.+.|+++++|
T Consensus 242 ~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~--------itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR 313 (545)
T KOG0360|consen 242 FTLQKTKMKLGVQVVVDDPEKLEQIRQREQD--------ITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRR 313 (545)
T ss_pred cccccccccccceEEEcChHHHHHHHHHHhH--------hHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHH
Confidence 7776777777788899999999999877766 88899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhCCeEccCCCCC------CCCCCCCCcceEEEEecCC
Q psy2832 320 VRKSDNNRIARACGATIVNRTEEL------REEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 320 v~~~~l~~la~~tG~~iv~~~~~~------~~~~lG~~~~~~~~~~~~~ 362 (362)
+.++++++|+++||+++++++.++ ++..+|+ |..+.+.+|||
T Consensus 314 ~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~-a~evvqeri~d 361 (545)
T KOG0360|consen 314 CKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGS-ADEVVQERIGD 361 (545)
T ss_pred HHHHHHHHHHHhhCCeeeehhhccccccccChhhccc-hhHHHHHhccc
Confidence 999999999999999999999854 4567999 68777777765
No 23
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.6e-47 Score=383.07 Aligned_cols=299 Identities=37% Similarity=0.695 Sum_probs=271.1
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|++++||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.+++++|+||..|++||+.
T Consensus 17 li~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~ 96 (485)
T PF00118_consen 17 LIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQE 96 (485)
T ss_dssp EEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred EEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhh
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|++.++++|+ +++++++..+ +.+.++|++++++|....|.+.+++++++|+..+... +|+.+ +.+.++.|+
T Consensus 97 ~~~~~~~~l~-~~s~~~~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~------~~~~~-i~i~~i~g~ 167 (485)
T PF00118_consen 97 ALKIILEYLE-KISIPINNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSN------FDLDN-IKIIKIPGG 167 (485)
T ss_dssp HHHHHHHHHH-HHSEESTSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTT------HHGGG-EEEEEEESS
T ss_pred hhhhhhhhhh-hhhccccccc-hhhhhhhcccccccccccchhhhhhhHHHHHHhhccc------ccccc-hhhhhhccc
Confidence 9999999999 9988887543 8999999999999999999999999999999444321 23332 778899999
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
++++|++++|+++++++.+++|++.+++|+|++.+++++
T Consensus 168 ~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~----------------------------------------- 206 (485)
T PF00118_consen 168 SISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLE----------------------------------------- 206 (485)
T ss_dssp SSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBS-----------------------------------------
T ss_pred cccccccccceeeeccccccccccccccceEEeeecccc-----------------------------------------
Confidence 999999999999999888877877777788888877777
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRV 320 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v 320 (362)
++++ .+.++.+++++++..+...|++ ++++.++++.+.++++|+++++|++.++++|.++||.+++++
T Consensus 207 ---~~~~-~~~~~~~~~~~~~~~~~~~e~~--------~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v 274 (485)
T PF00118_consen 207 ---YSKS-FKSEIRITSPEQLDELSKQEKK--------YLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRV 274 (485)
T ss_dssp ---SCCH-STEEEEESSTHHHHHHHHHHHH--------HHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSE
T ss_pred ---cccc-cccccchhhHHHHHHHHhhhhh--------hhccccceEeeeccceeeeecccccccchhhhhhhhhccccc
Confidence 4455 5679999999999999888877 999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 321 RKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 321 ~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
+.+++++|+++||+.+++++++++.+.+|+ |..+++..+|+
T Consensus 275 ~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~-~~~v~~~~i~~ 315 (485)
T PF00118_consen 275 SKEDLERIARATGASIISSLDDLSDEDLGF-CKSVEEREIGN 315 (485)
T ss_dssp HHHHHHHHHHHHTSBEBSSCGGSTGGGSEE-EEEEEEEEETS
T ss_pred hHHHHHhhhcccCCcEecccccccchhhhh-hhhhhhccccc
Confidence 999999999999999999999999888999 78888887764
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.7e-47 Score=375.31 Aligned_cols=263 Identities=47% Similarity=0.785 Sum_probs=241.9
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||||+++|+++|++++.+++++|+||..|++||+.
T Consensus 36 ~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~ 115 (464)
T cd00309 36 MLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEK 115 (464)
T ss_pred EEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|++.++++|+ +++++++..+++.+.++|++++++|.+..|.+.+++++++|+..+..+.. .+|. +.+.+.++.|+
T Consensus 116 a~~~~~~~L~-~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg 190 (464)
T cd00309 116 AVEKALEILK-EIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENG---DVDL-GVIRVEKKKGG 190 (464)
T ss_pred HHHHHHHHHH-HhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccC---cccc-ceEEEEecCCC
Confidence 9999999999 99999777789999999999999999999999999999999999865322 2333 35889999999
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
++.+|++++|+++++++.++.|++.+++|+|++++++++
T Consensus 191 ~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le----------------------------------------- 229 (464)
T cd00309 191 SLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLE----------------------------------------- 229 (464)
T ss_pred CcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcc-----------------------------------------
Confidence 999999999999999988888877777777777777666
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRV 320 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v 320 (362)
+ +|+++++|++.++++|.++||.+++++
T Consensus 230 --------------------------------------~--------------lIi~~~~I~~~al~~L~~~~I~~v~~~ 257 (464)
T cd00309 230 --------------------------------------Y--------------VVIAEKGIDDEALHYLAKLGIMAVRRV 257 (464)
T ss_pred --------------------------------------e--------------EEecCCCcCHHHHHHHHHCCeEEEEeC
Confidence 2 899999999999999999999999999
Q ss_pred ChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 321 RKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 321 ~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++++++|||++||+.++++++.++++.+|+ |+.+++.++|+
T Consensus 258 ~~~~L~~Ia~~tGa~ii~~~~~~~~~~lG~-~~~v~~~~~g~ 298 (464)
T cd00309 258 RKEDLERIAKATGATIVSRLEDLTPEDLGT-AGLVEETKIGD 298 (464)
T ss_pred CHHHHHHHHHHhCCEEecccccCCcccCcc-ccEEEEEEEcC
Confidence 999999999999999999999999999999 79999888764
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-46 Score=373.29 Aligned_cols=300 Identities=35% Similarity=0.532 Sum_probs=265.3
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||.|||++++|++|++++||||||++|||++||+++.+++++|+||+.|++||++
T Consensus 39 ~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~ 118 (524)
T COG0459 39 MLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRL 118 (524)
T ss_pred EEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67888779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|.+.++++|+ +.+.+++..+.+. +++.+++.++...++ +.+++++++|+..+..... |++ .+.+.+..|+
T Consensus 119 A~~~~~e~l~-~~a~~v~~~~~~~--~~~~t~v~sk~~~~~-~~i~~lv~~Av~~v~~~~~-----d~~-~i~~vk~~gg 188 (524)
T COG0459 119 AVEKAVEELK-EIAKPVSDSEEEL--KIAITSVASKSANSD-EEIGELVVEAVEKVGKEQS-----DLD-GIIIVKESGG 188 (524)
T ss_pred HHHHHHHHHH-HhhccCCcchhhh--hhhhheeeeeeccCh-HHHHHHHHHHHHHhccccc-----ccC-CeEEEEecCC
Confidence 9999999999 9999998655555 889999999988777 9999999999999865321 222 3778888999
Q ss_pred CcccceeEeceeecc-ccCCccCc-ccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 161 TIEDSCVLRGVMLNK-DVTHPKMR-RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 161 s~~dS~lv~Giv~~~-~~~~~~m~-~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
+.+++++++|+++++ ...++.|+ +.++||+|++++++++
T Consensus 189 ~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~--------------------------------------- 229 (524)
T COG0459 189 SETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLE--------------------------------------- 229 (524)
T ss_pred CccceEEEeeEEecCCccCCCCCCccccccceEEEEccccc---------------------------------------
Confidence 999999999999999 44455566 5555666666666665
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHhCCCc-EEEeCCCCCHHHHHHHHhCCCeE
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEE-EYVEKLEEEYVEKVCNDIIALKPD-LIFTEKGISDLAQHFLLKANITA 316 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~i~~~~v~-~I~~~~gi~~~~~~~l~~~~I~~ 316 (362)
..+++.+.++.++++..+..+...|+ + .+..++.++.+.+++ ++++++|++|+++++|.+.+|+.
T Consensus 230 -----~~k~~l~~e~~i~~~~~l~~i~e~ee~e--------~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt 296 (524)
T COG0459 230 -----IKKPELPLEIVISSGKPLLIIAEDEEGE--------ALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILT 296 (524)
T ss_pred -----cccccCcceeEecCccHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhccee
Confidence 67777777889999999999987776 5 999999999999999 99999999999999999999999
Q ss_pred EeeCChhhH-HHHHHHhCCeEccCCCCCCCCCCCC-CcceEEEEecCC
Q psy2832 317 IRRVRKSDN-NRIARACGATIVNRTEELREEDVGT-GAGLFEIKKVKT 362 (362)
Q Consensus 317 i~~v~~~~l-~~la~~tG~~iv~~~~~~~~~~lG~-~~~~~~~~~~~~ 362 (362)
.+++..+++ ++|++++||.++..+++.++..+|. .|..+++.++|+
T Consensus 297 ~~~v~~~dl~~~l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~ 344 (524)
T COG0459 297 GRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGD 344 (524)
T ss_pred cceecchhhHHHHHHccCceEEeecccCceeecCccccceEEEeeccc
Confidence 999999999 7999999999999999999999997 148888887764
No 26
>KOG0363|consensus
Probab=100.00 E-value=1.9e-47 Score=346.20 Aligned_cols=295 Identities=28% Similarity=0.448 Sum_probs=259.3
Q ss_pred CCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Q psy2832 6 MGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDM 85 (362)
Q Consensus 6 ~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~~ 85 (362)
.|.+.+||||+|||+++.+++|+||+|++.++.||.++|||||+|++|+++||++|.+|+.+.+||+.|+.|||.|...|
T Consensus 53 ~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a 132 (527)
T KOG0363|consen 53 AGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAA 132 (527)
T ss_pred CCceEEecchHHHHHhcCCCCchhhheeccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcC---CHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCc
Q psy2832 86 VNILETKVSTPLDKS---DRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTI 162 (362)
Q Consensus 86 ~~~l~~~~~~~v~~~---~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~ 162 (362)
.+.|. ..++.-..+ =++.|+++|+|.+++|+.++..+++++++++|+.++.- +.+++ .++++|+.|+++
T Consensus 133 ~eaL~-~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkG----s~nL~---~IqIIK~~Gg~l 204 (527)
T KOG0363|consen 133 LEALT-KSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKG----STNLE---AIQIIKKLGGKL 204 (527)
T ss_pred HHHHH-HhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC----CCCcc---ceeeehhcCCcc
Confidence 99998 665432211 17899999999999999999999999999999998853 22333 488999999999
Q ss_pred ccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccc
Q psy2832 163 EDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTL 242 (362)
Q Consensus 163 ~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~ 242 (362)
+||++-+|+++++.+-. +.|+.++|++|++-|.+++
T Consensus 205 ~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mD------------------------------------------- 240 (527)
T KOG0363|consen 205 EDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMD------------------------------------------- 240 (527)
T ss_pred ccccccccceeccccCC-CCcccccccceEEecCCCc-------------------------------------------
Confidence 99999999999986543 2355566666666666666
Q ss_pred ccccccc-ceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCC
Q psy2832 243 EYKKGES-QTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVR 321 (362)
Q Consensus 243 ~~~k~~~-~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~ 321 (362)
.+|-+- .+.+.+.+...+.++...|++ .+++.+++|.++++|+.+...-|.++..++|...||+.+++.+
T Consensus 241 -tDKvKvfGarvrVds~~klaelE~AEke--------KmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHAD 311 (527)
T KOG0363|consen 241 -TDKVKVFGARVRVDSTAKLAELEKAEKE--------KMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHAD 311 (527)
T ss_pred -ccceeeecceEeecchhHHHHHHHHHHH--------HHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeeccc
Confidence 334333 357888888888888777776 9999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 322 KSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 322 ~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
.+-++||+..||+.+++.+++++..++|+ |..+|+..||.
T Consensus 312 FdGiERLalvtGGeI~STFd~p~~~klG~-C~~IeeimiGe 351 (527)
T KOG0363|consen 312 FDGIERLALVTGGEIVSTFDNPELVKLGE-CDLIEEIMIGE 351 (527)
T ss_pred chhHHHHhhcccceeeeccCCcchhcccc-chhhHHHhcCc
Confidence 99999999999999999999999999999 89999988874
No 27
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.6e-46 Score=370.10 Aligned_cols=264 Identities=30% Similarity=0.534 Sum_probs=233.9
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||+++|+++||+++.+++++|+||+.|++||+.
T Consensus 36 mi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~ 115 (472)
T cd03341 36 MVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEK 115 (472)
T ss_pred EEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCC-C-CcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETKVSTP-L-DKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~-v-~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~ 158 (362)
|++.++++|+ +++.+ + +..+.+.+.++++|++++|... +.+.+++++++|+..+.++..+ .+|++ .+++.++.
T Consensus 116 a~~~~~~~L~-~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~-~~~~l~~l~~~a~~~~~~~~~~--~~~~~-~i~i~ki~ 190 (472)
T cd03341 116 ALKKALEILE-ELVVYKIEDLRNKEEVSKALKTAIASKQYG-NEDFLSPLVAEACISVLPENIG--NFNVD-NIRVVKIL 190 (472)
T ss_pred HHHHHHHHHH-HhhccccCCccCHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHhhccCC--cCChh-HeEEEEec
Confidence 9999999999 88765 4 4567889999999999999875 7899999999999998654322 35554 48899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|++++||++++|+++++++. .+.+.++||+|++++++++
T Consensus 191 Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le--------------------------------------- 229 (472)
T cd03341 191 GGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFD--------------------------------------- 229 (472)
T ss_pred CCCcccceEEeeEEEccccC--CCceeccCCcEEEEecccc---------------------------------------
Confidence 99999999999999986442 2234455555555555544
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+ ++++|+++++|++.++++|.+.||++++
T Consensus 230 ----------------------------------------~-----------g~~lvi~~~~I~d~al~~l~~~~I~av~ 258 (472)
T cd03341 230 ----------------------------------------I-----------GVNVIVAGGSVGDLALHYCNKYGIMVIK 258 (472)
T ss_pred ----------------------------------------C-----------CCeEEEECCCCCHHHHHHHHHCCeEEEE
Confidence 2 7899999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++++.++++||++||+.++++++.++++.+|+ |+.|++.++|+
T Consensus 259 ~~~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~ 301 (472)
T cd03341 259 INSKFELRRLCRTVGATPLPRLGAPTPEEIGY-CDSVYVEEIGD 301 (472)
T ss_pred eCCHHHHHHHHHHhCCEEecccccCCHhHCCC-ceEEEEEEECC
Confidence 99999999999999999999999999999999 89999999874
No 28
>KOG0362|consensus
Probab=100.00 E-value=9.5e-44 Score=333.54 Aligned_cols=297 Identities=27% Similarity=0.451 Sum_probs=262.0
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
|++|+.|++++|||.+||+++|+++||+||||+++++.|+++.||||+++|+|+++||++|++||..|++|.+|++||+.
T Consensus 54 ~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~ 133 (537)
T KOG0362|consen 54 MVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYET 133 (537)
T ss_pred eeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCC--CCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcC
Q psy2832 81 ALEDMVNILETKVST--PLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIP 158 (362)
Q Consensus 81 a~~~~~~~l~~~~~~--~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~ 158 (362)
|.+.+++.|+ ++-+ -.+..|.+ ..+++++.+|...+ -+++++++.++...+.+. +.++.| .+.+.|+.
T Consensus 134 A~~~~~e~l~-~lv~~~~~d~~d~~---~~~rs~i~skq~~~-ed~l~~lVa~ac~si~p~--~~Fnvd---nIrVcKi~ 203 (537)
T KOG0362|consen 134 ATKEALEILP-ELVVQSIGDLEDKE---WALRSVIMSKQYGN-EDFLTKLVAKACVSILPL--MSFNVD---NIRVCKIL 203 (537)
T ss_pred HHHHHHHHhH-HHHHHhcccccChH---HHHHHHHHHhhcch-HHHHHHHHHHHHHhhccc--cccccc---ceEEEEEe
Confidence 9999999999 5432 22444665 67778887776543 477888899998887655 222333 38899999
Q ss_pred CCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeee
Q psy2832 159 GGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238 (362)
Q Consensus 159 g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~ 238 (362)
|+++.+|.++.|+++++... +-+++.++++|.+++||++
T Consensus 204 Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d--------------------------------------- 242 (537)
T KOG0362|consen 204 GGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFD--------------------------------------- 242 (537)
T ss_pred cCCcccceeeEEEEeccccC--CcccccccceeEEEecCCC---------------------------------------
Confidence 99999999999999998654 2235556788999999888
Q ss_pred cccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEe
Q psy2832 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIR 318 (362)
Q Consensus 239 ~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~ 318 (362)
+..+++.+.+-+++++++..|...|+. .+..+++.|...++++|++.+.+++.+++|+.+++|++++
T Consensus 243 -----~~~TEtkgTvLi~~A~el~~FSKgEe~--------lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 243 -----IAQTETKGTVLLKNAKELLNFSKGEEA--------LLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred -----cccccCcceeeecCcHhhhhhccccHH--------HHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 667788889999999999999888877 9999999999999999999999999999999999999999
Q ss_pred eCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 319 RVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 319 ~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
--++.+++||++..||.+..++..+....+|+ |..+....+||
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~-~d~V~~~EiG~ 352 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFPPAPEELGY-CDSVSTQEIGD 352 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccCCCCccccc-cceeeeeecCC
Confidence 99999999999999999999999999999999 79888888875
No 29
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.3e-42 Score=343.72 Aligned_cols=268 Identities=22% Similarity=0.334 Sum_probs=228.0
Q ss_pred CccCCCCCeEEeccHHHHHhhccccCh----hhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP----~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+|||++|+++|| +|+|++++|++|++++||||||+++||++||++|.+|+++|+||..|++
T Consensus 38 mi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~ 117 (542)
T PRK12849 38 VIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKR 117 (542)
T ss_pred EEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|++.++++|+ +++.|++ +.+.++++|+++.+ +.+.+++++++|+..+..+ + .+| +.
T Consensus 118 G~~~A~~~~~~~L~-~~s~~~~--~~~~l~~va~ts~~------~~~~l~~lv~~Av~~v~~~--g--~i~------i~- 177 (542)
T PRK12849 118 GIDKAVEAVVEELK-ALARPVS--GSEEIAQVATISAN------GDEEIGELIAEAMEKVGKD--G--VIT------VE- 177 (542)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHHhcC------ChHHHHHHHHHHHHHhccC--C--cEe------EE-
Confidence 99999999999999 8998886 78889999998863 6688999999999988532 1 222 22
Q ss_pred cCCCCccc-ceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTIED-SCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~~d-S~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
.|+++.| +++++|+++++++.++.|... ...||+.++||+|
T Consensus 178 -~g~~~~d~~~~v~G~~~~~g~~~~~~~~~-------------------------------------~~~~~~~~~n~~I 219 (542)
T PRK12849 178 -ESKTLETELEVTEGMQFDRGYLSPYFVTD-------------------------------------PERMEAVLEDPLI 219 (542)
T ss_pred -eCCCcceeEEEEEeEEEecCcccCccccc-------------------------------------ccCceEEeeCcEE
Confidence 4777775 799999999998877654310 1135667788888
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhC---
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKA--- 312 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~--- 312 (362)
+++|+. + ++++ ++...++++.+.++++|+++++|++.|+++|.++
T Consensus 220 li~d~~-----------i--~~~~-------------------~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~ 267 (542)
T PRK12849 220 LLTDKK-----------I--SSLQ-------------------DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLR 267 (542)
T ss_pred EeecCC-----------c--CCHH-------------------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhh
Confidence 888771 1 1211 4455678888899999999999999999999998
Q ss_pred ---CCeEEeeCCh-----hhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 313 ---NITAIRRVRK-----SDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 313 ---~I~~i~~v~~-----~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
+|+++++++. .++++||++||+.+++ +++.++++++|+ |+.+++..
T Consensus 268 ~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~-~~~v~~~~ 326 (542)
T PRK12849 268 GGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGR-AKRVTITK 326 (542)
T ss_pred ccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCce-eeEEEEee
Confidence 9999999884 4499999999999999 688888899999 78888754
No 30
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.8e-42 Score=342.94 Aligned_cols=269 Identities=23% Similarity=0.356 Sum_probs=230.5
Q ss_pred CccCCCCCeEEeccHHHHHhhccccCh----hhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP----~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+|||++|+++|| .|+|+++++++|++++||||||+++||++||+++.+++++|+||..|++
T Consensus 38 mi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~ 117 (542)
T PRK00013 38 VLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKR 117 (542)
T ss_pred EEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 688999999999999999999999999 6999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|.+.++++|+ +++.|++ +.+.++++|.++++ +.+.+++++++|+..+..+ + .+.+.+
T Consensus 118 G~~~A~~~~~~~L~-~~a~~~~--~~~~l~~va~ts~~------~~~~ls~lv~~Av~~v~~~--g--------~i~i~~ 178 (542)
T PRK00013 118 GIDKAVEAAVEELK-KISKPVE--DKEEIAQVATISAN------GDEEIGKLIAEAMEKVGKE--G--------VITVEE 178 (542)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHhccc------chHHHHHHHHHHHHHhCcC--C--------cEEEEE
Confidence 99999999999999 9999986 78889999988763 5788999999999988532 1 145666
Q ss_pred cCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCccee
Q psy2832 157 IPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236 (362)
Q Consensus 157 i~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~ 236 (362)
..| +..++++++|+++++++.++.|... ...||+.++||+|+
T Consensus 179 ~~~-~~~~~~~v~G~~~~~g~~~~~~~~~-------------------------------------~~~~~~~~~n~~Il 220 (542)
T PRK00013 179 SKG-FETELEVVEGMQFDRGYLSPYFVTD-------------------------------------PEKMEAELENPYIL 220 (542)
T ss_pred cCC-CCceEEEEEeEEecCCccccccccc-------------------------------------ccCCeEEEecCEEE
Confidence 656 6668999999999998877655310 01346677788888
Q ss_pred eecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCC---
Q psy2832 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKAN--- 313 (362)
Q Consensus 237 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~--- 313 (362)
++|+ .+ ++.+ ++...++.+.+.++++|+++++|++.|+++|..++
T Consensus 221 v~d~-----------~i--~~~~-------------------~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g 268 (542)
T PRK00013 221 ITDK-----------KI--SNIQ-------------------DLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRG 268 (542)
T ss_pred EEcC-----------cc--CCHH-------------------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcc
Confidence 8877 21 1211 45566788899999999999999999999999986
Q ss_pred ---CeEEeeCC-----hhhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 314 ---ITAIRRVR-----KSDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 314 ---I~~i~~v~-----~~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
|+++++++ ++++++||++||+.+++ +++.++++++|+ |+.+++.+
T Consensus 269 ~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~ 326 (542)
T PRK00013 269 TLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQ-AKKVVVTK 326 (542)
T ss_pred cceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCe-eeEEEEec
Confidence 89999886 88999999999999999 799999999999 78888753
No 31
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-41 Score=340.18 Aligned_cols=269 Identities=21% Similarity=0.332 Sum_probs=229.0
Q ss_pred CccCCCCCeEEeccHHHHHhhccccCh----hhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP----~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+|||++|+++|| +|+|++++|++|++++||||||+++||++||++|.+|+++|+||..|++
T Consensus 39 mi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~ 118 (541)
T PRK12851 39 VIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKR 118 (541)
T ss_pred EEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|++.++++|+ +++.+++ +.+.++++|+++. .+.+.+++++++|+..+..+ + . +.+.+
T Consensus 119 G~~~a~~~~~~~L~-~~s~~~~--~~~~l~~va~~s~------~~~~~l~~lv~~Av~~vg~~--g--~------i~i~~ 179 (541)
T PRK12851 119 GIDRAVAAVVEELK-ANARPVT--TNAEIAQVATISA------NGDAEIGRLVAEAMEKVGNE--G--V------ITVEE 179 (541)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHHhc------cChHHHHHHHHHHHHHhccc--C--c------eEEEE
Confidence 99999999999999 8999886 6788999998775 46789999999999988532 1 1 23444
Q ss_pred cCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCccee
Q psy2832 157 IPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236 (362)
Q Consensus 157 i~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~ 236 (362)
.. ++..++++++|+++++++.++.+.. . +..||+++++|+|+
T Consensus 180 ~~-~~~~~~~~~~G~~~~~g~~~~~~~~--------------~-----------------------~~~~~~~~~~~~Il 221 (541)
T PRK12851 180 SK-TAETELEVVEGMQFDRGYLSPYFVT--------------D-----------------------ADKMEAELEDPYIL 221 (541)
T ss_pred cc-CCCcceEEEEEEEecCCcccccccc--------------C-----------------------CCCCeEEecccEEE
Confidence 33 3455689999999999887654321 0 12467778888888
Q ss_pred eecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC--
Q psy2832 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI-- 314 (362)
Q Consensus 237 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I-- 314 (362)
++|++ + ++ + + .+...++.+.+.++++|+++++|++.|+++|..++|
T Consensus 222 v~d~~-----------i--~~------~-----~--------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g 269 (541)
T PRK12851 222 IHEKK-----------I--SN------L-----Q--------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRG 269 (541)
T ss_pred EEcCC-----------c--Cc------H-----H--------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcC
Confidence 88882 1 11 1 1 566778889999999999999999999999999997
Q ss_pred ----eEEee-----CChhhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 315 ----TAIRR-----VRKSDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 315 ----~~i~~-----v~~~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
+++++ +++.++++||++||+.+++ ++++++++.+|+ |+.+++.+
T Consensus 270 ~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~ 327 (541)
T PRK12851 270 GLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGR-AKKVVVEK 327 (541)
T ss_pred ceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCC-ccEEEEEc
Confidence 88886 8999999999999999999 688888889999 78888765
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=1.7e-41 Score=341.63 Aligned_cols=268 Identities=19% Similarity=0.328 Sum_probs=230.2
Q ss_pred CccCCCCCeEEeccHHHHHhhccccCh----hhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP----~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+||+++|+++|| +|+|+++++++|++++||||||+++||++||++|.+|+++|+||..|++
T Consensus 50 mi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~ 129 (555)
T PTZ00114 50 IIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKR 129 (555)
T ss_pred EEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence 688999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|++.++++|+ +++.+++ +.+.+.++|++++++ .+.+++++++|+..+..+ + .+.+
T Consensus 130 G~~~A~~~~~~~L~-~~s~~v~--~~~~l~~va~ts~~~------~~~l~~li~eAv~~vg~~--g----------~I~~ 188 (555)
T PTZ00114 130 GIDLAVKVVLESLK-EQSRPVK--TKEDILNVATISANG------DVEIGSLIADAMDKVGKD--G----------TITV 188 (555)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHHHcCC------hHHHHHHHHHHHHHhCcC--C----------cEEE
Confidence 99999999999999 9999986 788899999988643 568999999999987532 1 1566
Q ss_pred cCCCCcccc-eeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTIEDS-CVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~~dS-~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
..|+++.++ ++++|+++++++.++.|... +.+||+.+++|+|
T Consensus 189 ~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~-------------------------------------~~~~~~~l~~~~I 231 (555)
T PTZ00114 189 EDGKTLEDELEVVEGMSFDRGYISPYFVTN-------------------------------------EKTQKVELENPLI 231 (555)
T ss_pred cCCCCccceEEEEEEEEEeccccccccccc-------------------------------------cccCeEEecCCEE
Confidence 779998887 89999999998887765310 1135566778888
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCC--
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKAN-- 313 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~-- 313 (362)
+++|+.++ +.+ .+...++.+.+.++++++++++|++.|+++|..++
T Consensus 232 li~d~~L~-------------~~~-------------------~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~ 279 (555)
T PTZ00114 232 LVTDKKIS-------------SIQ-------------------SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLR 279 (555)
T ss_pred EEEcCCCC-------------CHH-------------------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCC
Confidence 88777321 111 45556778889999999999999999999999886
Q ss_pred ----CeEEee-----CChhhHHHHHHHhCCeEccCC------CCCCCCCCCCCcceEEEEe
Q psy2832 314 ----ITAIRR-----VRKSDNNRIARACGATIVNRT------EELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 314 ----I~~i~~-----v~~~~l~~la~~tG~~iv~~~------~~~~~~~lG~~~~~~~~~~ 359 (362)
|.++++ ++++++++||++||+.++++. +.++++.+|+ |+.+++.+
T Consensus 280 g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~-a~~v~~~~ 339 (555)
T PTZ00114 280 GGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGS-AKKVTVTK 339 (555)
T ss_pred CceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCC-CceEEEEe
Confidence 899977 677999999999999999998 7778888999 78888775
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=2.2e-41 Score=338.93 Aligned_cols=268 Identities=22% Similarity=0.346 Sum_probs=228.0
Q ss_pred CccCCCCCeEEeccHHHHHhhccccCh----hhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP----~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+||+++|+++|| +|+|+++++++|++++||||||+++||++||++|.+++++|+||..|++
T Consensus 37 mi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~ 116 (524)
T TIGR02348 37 VLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKR 116 (524)
T ss_pred EEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 788999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|++.++++|+ +++.|++ +.+.++++|+++.+ +.+.+++++++|+..+..+ + .+ .+..
T Consensus 117 G~~~A~~~~l~~L~-~~s~~~~--~~~~l~~va~ts~~------~~~~l~~lv~~A~~~v~~~--~--~i------~v~~ 177 (524)
T TIGR02348 117 GIEKAVEAAVEELK-KLSKPVK--GKKEIAQVATISAN------NDEEIGSLIAEAMEKVGKD--G--VI------TVEE 177 (524)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHhCcC--C--cE------eeec
Confidence 99999999999999 9999986 78899999998753 4688999999999987532 1 12 2332
Q ss_pred cCCCCc-ccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTI-EDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~-~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
|+.. .++++++|+++++++.++.|... +..||+.+++|+|
T Consensus 178 --g~~~~~~s~~v~G~~~~~g~~~~~~~~~-------------------------------------~~~~~~~~~n~~I 218 (524)
T TIGR02348 178 --SKSLETELEVVEGMQFDRGYISPYFVTD-------------------------------------AEKMEVELENPYI 218 (524)
T ss_pred --CCCccccEEEEEeEEEcCCCCCcccccC-------------------------------------ccCCeEEeeCcee
Confidence 5555 46899999999998877665311 0134667778888
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhC---
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKA--- 312 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~--- 312 (362)
+++|+ . +++++ .+..+++.+.+.++++|+++++|++.|+++|..+
T Consensus 219 li~d~-----------~--i~~~~-------------------~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~ 266 (524)
T TIGR02348 219 LITDK-----------K--ISNIK-------------------DLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLR 266 (524)
T ss_pred eeccC-----------C--cCCHH-------------------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcc
Confidence 88877 1 11111 5566678899999999999999999999999986
Q ss_pred ---CCeEEeeCCh-----hhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 313 ---NITAIRRVRK-----SDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 313 ---~I~~i~~v~~-----~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
+|+++++++. +++++||++||+.+++ +++.++++.+|+ |+.+++.+
T Consensus 267 ~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~ 325 (524)
T TIGR02348 267 GTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGK-AKKVTVDK 325 (524)
T ss_pred cccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCC-ceEEEEee
Confidence 8899988865 7999999999999999 899999999999 78888764
No 34
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.8e-41 Score=337.52 Aligned_cols=268 Identities=23% Similarity=0.367 Sum_probs=229.8
Q ss_pred CccCCCCCeEEeccHHHHHhhccccCh----hhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP----~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+||+++|+++|| +|+|+++++++|++++||||||+++||++||+++.+++++|+||..|++
T Consensus 36 mi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~ 115 (520)
T cd03344 36 VIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKR 115 (520)
T ss_pred EEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 788999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|.+.++++|+ +++.|++ |.+.++++|.+++++ .+.+++++++|+..+..+ + . +.+
T Consensus 116 G~~~a~~~~~~~L~-~~~~~i~--~~~~l~~va~ts~~~------~~~l~~lv~~A~~~v~~~--~--~------i~v-- 174 (520)
T cd03344 116 GIEKAVEAVVEELK-KLSKPVK--TKEEIAQVATISANG------DEEIGELIAEAMEKVGKD--G--V------ITV-- 174 (520)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHHhcCC------hHHHHHHHHHHHHHhccC--C--c------EEE--
Confidence 99999999999999 8999986 788999999999864 588999999999987532 1 1 223
Q ss_pred cCCCCccc-ceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTIED-SCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~~d-S~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
..|+++.| +++++|+++++++.++.|... + .+|++++++|+|
T Consensus 175 ~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~---~----------------------------------~~~~~~~~n~~I 217 (520)
T cd03344 175 EEGKTLETELEVVEGMQFDRGYLSPYFVTD---P----------------------------------EKMEVELENPYI 217 (520)
T ss_pred EeCCCcceeEEEEeeEEecCCCCCCccccC---c----------------------------------ccCeEEeeCCEE
Confidence 36888887 799999999998887665310 0 024456677888
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC-
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI- 314 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I- 314 (362)
+++|+++ ++++ .+...++.+.+.++++|+++++|++.|+++|.+++|
T Consensus 218 li~d~~l-------------~~~~-------------------~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~ 265 (520)
T cd03344 218 LLTDKKI-------------SSIQ-------------------ELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLR 265 (520)
T ss_pred EEECCCC-------------CCHH-------------------HHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCc
Confidence 8887721 1211 455567889999999999999999999999999999
Q ss_pred -----eEEeeC-----ChhhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 315 -----TAIRRV-----RKSDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 315 -----~~i~~v-----~~~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
+++++. +++++++||++||+.+++ +++.++++++|+ |+.+++.+
T Consensus 266 ~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~-~~~v~~~~ 324 (520)
T cd03344 266 GGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGR-AKKVVVTK 324 (520)
T ss_pred cCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCc-ceEEEEee
Confidence 887766 889999999999999999 788888889999 78888764
No 35
>KOG0359|consensus
Probab=100.00 E-value=9.2e-43 Score=321.73 Aligned_cols=301 Identities=30% Similarity=0.547 Sum_probs=272.1
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
|++++.|++.+|.||.+++.+|+++||.+-++..++.+|+...|||||++|+|+++|+++|..++..|+||..|.+||+.
T Consensus 45 mlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~ 124 (520)
T KOG0359|consen 45 MLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEA 124 (520)
T ss_pred hccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
|.+.++++|+ ..+.++ +++.|..++++++.+|+-..--+.++.++++++..+.. ....+|+. .+.+.++-..
T Consensus 125 a~~~~l~~L~-k~~~~~---~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~---~~~~idl~-mveim~mq~~ 196 (520)
T KOG0359|consen 125 AKNKALEFLE-KVSREV---DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRR---QEEPIDLF-MVEIMEMQHK 196 (520)
T ss_pred HHHHHHhhhh-ccccch---hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeecc---CCCCcchh-HHHhhhhccC
Confidence 9999999999 877777 48999999999999999888888999999999988762 22346765 3677888888
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
+..|+.+++|++++++..||.|++.++|+.|++.|.+++
T Consensus 197 s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLE----------------------------------------- 235 (520)
T KOG0359|consen 197 SLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLE----------------------------------------- 235 (520)
T ss_pred chhhhHHhhhhhccCCCCCcccccchhceEEEEeecccc-----------------------------------------
Confidence 888899999999999999999999999999999999999
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC----cEEEeCCCCCHHHHHHHHhCCCeE
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKP----DLIFTEKGISDLAQHFLLKANITA 316 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v----~~I~~~~gi~~~~~~~l~~~~I~~ 316 (362)
|.|++-++.+-+++..+-+.+...|++ .+.+.+++|+..+- =+|++++||||..++.|.+.||.+
T Consensus 236 ---YEK~EinsgffYsta~ere~L~~~eR~--------Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIla 304 (520)
T KOG0359|consen 236 ---YEKPEINSGFFYSTAEEREVLVLAERK--------FIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILA 304 (520)
T ss_pred ---ccccccccchhccchhHHHHHHHHHHH--------HHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHH
Confidence 778888889999999999998888877 55555666554432 267789999999999999999999
Q ss_pred EeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 317 IRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 317 i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
++|.+++.|+||..+||+.+++++++++++.+|+ |+.+.+.++|+
T Consensus 305 LRRAKRRNmERL~lacGG~a~nsvddLtp~~LG~-aglVye~tlGE 349 (520)
T KOG0359|consen 305 LRRAKRRNMERLVLACGGEAVNSVDDLTPDYLGY-AGLVYEYTLGE 349 (520)
T ss_pred HHHHhhhhHHHHHHhhccceecccccCChhhccc-cceeEEeeccc
Confidence 9999999999999999999999999999999999 79998899885
No 36
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=9.1e-41 Score=335.24 Aligned_cols=269 Identities=21% Similarity=0.341 Sum_probs=228.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChh----hHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPA----GKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~----akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+|||++|+++||+ |+|++++|++|++++||||||+++||++||++|.+|+++|+||..|++
T Consensus 39 mi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~ 118 (544)
T PRK12850 39 VLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKR 118 (544)
T ss_pred EEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHH
Confidence 7889999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|++.++++|+ +++.+++ +.+.|+++|++++++ .+.+++++++|+..+..+ + .+|++ ..+
T Consensus 119 G~~~a~~~~~~~L~-~~s~~v~--~~~~l~~va~~s~~~------~~~l~~lv~eAv~~vg~~--g--~i~v~----~~~ 181 (544)
T PRK12850 119 GIDLAVAAVVDELK-KIAKKVT--SSKEIAQVATISANG------DESIGEMIAEAMDKVGKE--G--VITVE----EAK 181 (544)
T ss_pred HHHHHHHHHHHHHH-HhccCCC--CHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccc--C--ceeeE----Ecc
Confidence 99999999999999 8998886 788899999888654 588999999999988532 2 23322 122
Q ss_pred cCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCccee
Q psy2832 157 IPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236 (362)
Q Consensus 157 i~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~ 236 (362)
..| .++++++|+++++++.++.|... +..||+.+++|+|+
T Consensus 182 ~~g---~~~~~v~G~~~~~g~~~p~~~~~-------------------------------------~~~~~~~~~n~~Il 221 (544)
T PRK12850 182 TLG---TELDVVEGMQFDRGYLSPYFVTN-------------------------------------PEKMRAELEDPYIL 221 (544)
T ss_pred ccC---cceEEEEeEEecCccCcCccccc-------------------------------------cccCeEEEeCCEEE
Confidence 233 46899999999998887665321 11346677888888
Q ss_pred eecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC--
Q psy2832 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI-- 314 (362)
Q Consensus 237 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I-- 314 (362)
++|+ .+ ++ .+ .+...++.+.+.++++|+++++|++.++++|..++|
T Consensus 222 l~d~-----------~i--~~-----------~~--------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~ 269 (544)
T PRK12850 222 LHEK-----------KI--SN-----------LQ--------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRG 269 (544)
T ss_pred EEec-----------cc--CC-----------HH--------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcc
Confidence 8888 11 11 11 566778889999999999999999999999999999
Q ss_pred ----eEEee-----CChhhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 315 ----TAIRR-----VRKSDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 315 ----~~i~~-----v~~~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
+++++ +++.++++||++||+.+++ ++++++++.+|+ |+.+++.+
T Consensus 270 ~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~-~~~v~~~~ 327 (544)
T PRK12850 270 GLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGR-AKRVLITK 327 (544)
T ss_pred cceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCC-CcEEEEEe
Confidence 99887 8899999999999999999 788888899999 68887654
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.2e-40 Score=330.45 Aligned_cols=268 Identities=20% Similarity=0.311 Sum_probs=225.3
Q ss_pred CccCCCCCeEEeccHHHHHhhccc----cChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITV----QHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~----~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+|||++|++ +||.|+|+++++++|++++||||||+++||++||++|.+|+++|+||..|++
T Consensus 39 mi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~ 118 (545)
T PRK12852 39 VIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKR 118 (545)
T ss_pred EEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 788999999999999999999999 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||++|++.++++|+ ++++|++ +.+.+.++|+++.++ .+.+++++++|+..+..+ + .++ +.
T Consensus 119 G~~~A~~~~l~~L~-~~s~~v~--~~~~l~~va~~s~~~------~~~l~~li~eA~~~vg~~--g--~i~------v~- 178 (545)
T PRK12852 119 GIDIAVAAVVKDIE-KRAKPVA--SSAEIAQVGTISANG------DAAIGKMIAQAMQKVGNE--G--VIT------VE- 178 (545)
T ss_pred HHHHHHHHHHHHHH-HhcccCC--CHHHHHHHHhhhcCC------hHHHHHHHHHHHHHhccC--C--cee------ee-
Confidence 99999999999999 8999987 456699999887644 478999999999988542 2 222 22
Q ss_pred cCCCCc-ccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTI-EDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~-~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
.|+++ .++++++|+++++++.+|.+.. ++ ..|+..+++|+|
T Consensus 179 -~g~~~~~~~~~v~G~~~~~g~~~p~~v~---~~----------------------------------~~~~~~l~n~~I 220 (545)
T PRK12852 179 -ENKSLETEVDIVEGMKFDRGYLSPYFVT---NA----------------------------------EKMTVELDDAYI 220 (545)
T ss_pred -cCCCcceEEEEEEeEEecCCccCCcccc---cc----------------------------------ccceEEecCceE
Confidence 16665 5799999999999887765431 00 124556778888
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhC---
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKA--- 312 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~--- 312 (362)
+++|+ .+ ++. + .+...++.+.+.++++|+++++|++.|+++|..+
T Consensus 221 li~d~-----------~i--~~~-----------~--------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~ 268 (545)
T PRK12852 221 LLHEK-----------KL--SGL-----------Q--------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLR 268 (545)
T ss_pred EEecC-----------cc--CCH-----------H--------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhccc
Confidence 88766 11 111 1 5666788899999999999999999999999875
Q ss_pred ---CCeEEeeCC-----hhhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 313 ---NITAIRRVR-----KSDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 313 ---~I~~i~~v~-----~~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
+|+++++.+ +.++++||++||+.+++ ++++++++.+|+ |+.+++.+
T Consensus 269 ~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~-~~~v~~~~ 327 (545)
T PRK12852 269 GGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGR-AKKVVIDK 327 (545)
T ss_pred ccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCC-CcEEEEEc
Confidence 799999766 89999999999999999 788899999999 78888765
No 38
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1e-39 Score=329.38 Aligned_cols=267 Identities=24% Similarity=0.362 Sum_probs=226.4
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChh----hHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPA----GKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~----akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+||+++|++.||+ |+|++++|++|++++||||||++|||++||+++.++++.|+||..|++
T Consensus 94 mi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~ 173 (600)
T PLN03167 94 VLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173 (600)
T ss_pred EEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6889999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||++|.+.++++|+ +++.+++ + +.|.++|.++++. .+.+++++++|+..+..+ + .++ +.
T Consensus 174 G~~~A~~~~~~~L~-~~s~~v~--d-~~L~~vA~tS~~~------~~~i~~liaeAv~~Vg~~--g--~i~------v~- 232 (600)
T PLN03167 174 GIEKTAKALVKELK-KMSKEVE--D-SELADVAAVSAGN------NYEVGNMIAEAMSKVGRK--G--VVT------LE- 232 (600)
T ss_pred HHHHHHHHHHHHHH-HhcccCC--H-HHHHHHHHHhccC------cHHHHHHHHHHHHHhccC--C--cEE------ec-
Confidence 99999999999999 8998886 3 5699999998763 468999999999988532 1 122 22
Q ss_pred cCCCCcccc-eeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTIEDS-CVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~~dS-~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
.|+++.++ ++++|+++++++.+|.|... ..+|++.++||+|
T Consensus 233 -~g~s~~dsl~~v~G~~~d~g~~spyfvt~-------------------------------------~~~m~~~l~np~I 274 (600)
T PLN03167 233 -EGKSAENNLYVVEGMQFDRGYISPYFVTD-------------------------------------SEKMSVEYDNCKL 274 (600)
T ss_pred -cCCCccceeEEEEEEEecCCccCcccccC-------------------------------------cCCCeEEEeCCEE
Confidence 48888876 89999999999988765321 1145667788888
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-----
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLL----- 310 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~----- 310 (362)
+++|+ . +++.+ .+....+.+.+.++++|+++++|++.++++|.
T Consensus 275 ll~d~-----------~--i~~~~-------------------~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~ 322 (600)
T PLN03167 275 LLVDK-----------K--ITNAR-------------------DLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLR 322 (600)
T ss_pred EEEcc-----------c--cCCHH-------------------HHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcc
Confidence 88877 1 22322 33334456777899999999999999999999
Q ss_pred -hCCCeEEeeCC-----hhhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEEe
Q psy2832 311 -KANITAIRRVR-----KSDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 311 -~~~I~~i~~v~-----~~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~~ 359 (362)
..+|.++++.+ ++.+++||.+||+.+++ ++++++.+.+|+ |+.+++.+
T Consensus 323 g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~-a~~v~~~~ 381 (600)
T PLN03167 323 GSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGT-AAKVVLTK 381 (600)
T ss_pred ccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCce-eeEEEEec
Confidence 78899999996 88999999999999999 688888899999 79999887
No 39
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.3e-39 Score=326.46 Aligned_cols=269 Identities=21% Similarity=0.302 Sum_probs=219.6
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhH----HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGK----SMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~ak----ll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+|||++|+++||+++ |+++++.+|++++||||||++|||++||++|.+|+++|+||..|++
T Consensus 38 mi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~ 117 (529)
T CHL00093 38 VLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKR 117 (529)
T ss_pred EEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 788999999999999999999999999995 8888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||+.|.+.++++|+ .++.|++ |++.|+++|+++++ +.+.+++++++|+..+..+ + .+| +.
T Consensus 118 G~~~A~~~~l~~L~-~~s~~v~--d~~~L~~VA~ts~~------~~~~l~~lv~eAv~~vg~~--g--~i~------~~- 177 (529)
T CHL00093 118 GIEKATQYVVSQIA-EYARPVE--DIQAITQVASISAG------NDEEVGSMIADAIEKVGRE--G--VIS------LE- 177 (529)
T ss_pred HHHHHHHHHHHHHH-HhCCCCC--CHHHHHHHHHHhcc------ChHHHHHHHHHHHHHhccC--C--cee------ec-
Confidence 99999999999999 9999997 78889999998865 5788999999999988532 2 222 21
Q ss_pred cCCCCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCccee
Q psy2832 157 IPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236 (362)
Q Consensus 157 i~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~ 236 (362)
-.+++.+++++++|+++++++.+|.|... ++ .|+..++||+|+
T Consensus 178 ~g~~~~~~~~~v~G~~~~~g~~~p~fv~~---~k----------------------------------~~~~~l~n~~Il 220 (529)
T CHL00093 178 EGKSTVTELEITEGMRFEKGFISPYFVTD---TE----------------------------------RMEVVQENPYIL 220 (529)
T ss_pred CCCccceeeEEEeeEEecCccCcCccccC---Cc----------------------------------cceEEecCceeh
Confidence 12233446799999999999887765310 00 233456677777
Q ss_pred eecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHH--HHHHHHh---
Q psy2832 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDL--AQHFLLK--- 311 (362)
Q Consensus 237 ~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~--~~~~l~~--- 311 (362)
++|+.+++.+ . .+..+++.+.+.++++++++++|++. +..++++
T Consensus 221 i~d~~le~~~-----------------------~--------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g 269 (529)
T CHL00093 221 LTDKKITLVQ-----------------------Q--------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRG 269 (529)
T ss_pred hhcCCCCchH-----------------------H--------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcc
Confidence 7777332210 1 55666788889999999999999984 4455577
Q ss_pred -CCCeEEeeCCh-----hhHHHHHHHhCCeEcc-----CCCCCCCCCCCCCcceEEEE
Q psy2832 312 -ANITAIRRVRK-----SDNNRIARACGATIVN-----RTEELREEDVGTGAGLFEIK 358 (362)
Q Consensus 312 -~~I~~i~~v~~-----~~l~~la~~tG~~iv~-----~~~~~~~~~lG~~~~~~~~~ 358 (362)
.+|+++++++. .++++||++||+.+++ +++.++++.+|+ |+.+++.
T Consensus 270 ~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~-~~~v~~~ 326 (529)
T CHL00093 270 IVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQ-ARRIIVT 326 (529)
T ss_pred cceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCc-ceEEEEe
Confidence 59999999854 7899999999999999 799999999999 6777764
No 40
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.2e-38 Score=319.81 Aligned_cols=266 Identities=20% Similarity=0.288 Sum_probs=220.6
Q ss_pred CccCCCCCeEEeccHHHHHhhcccc----ChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQ----HPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIK 76 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~----hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~ 76 (362)
||+++.|+++|||||+||+++|++. ||.|+|+++++++|++++||||||+++||++||+++.+++++|+||..|++
T Consensus 39 ~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~ 118 (546)
T PRK14104 39 VLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKR 118 (546)
T ss_pred EEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHH
Confidence 6778889999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEE
Q psy2832 77 AYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEK 156 (362)
Q Consensus 77 g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~k 156 (362)
||++|++.++++|+ +++.|++ +.+.+.++|+++.+++ +.+++++++|+..+..+ + .+ .+..
T Consensus 119 G~~~A~~~~~~~L~-~~a~~v~--~~~~l~~va~~s~~~d------~~i~~lv~~Av~~vg~~--g--~i------~v~~ 179 (546)
T PRK14104 119 GIDLAVEAVVADLV-KNSKKVT--SNDEIAQVGTISANGD------AEIGKFLADAMKKVGNE--G--VI------TVEE 179 (546)
T ss_pred HHHHHHHHHHHHHH-HhcccCC--CHHHHHHHHHHHhcCc------hHHHHHHHHHHHHhccC--C--ce------eeEe
Confidence 99999999999999 9999997 4567999999887654 67999999999988532 2 22 2332
Q ss_pred cCCCCc-ccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcce
Q psy2832 157 IPGGTI-EDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235 (362)
Q Consensus 157 i~g~s~-~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki 235 (362)
. .++ .++++++|+++++++.+|.|... ++ .++..+++|+|
T Consensus 180 ~--~~~~~~~~~~~G~~~~~g~~~p~~~~~---~~----------------------------------~~~~~~~~~~I 220 (546)
T PRK14104 180 A--KSLETELDVVEGMQFDRGYISPYFVTN---AD----------------------------------KMRVEMDDAYI 220 (546)
T ss_pred c--ccccceEEEEEEEEEeCCCCCcchhcC---cc----------------------------------cCceeeeCcEE
Confidence 2 334 36899999999999988765321 11 12334556666
Q ss_pred eeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHh----
Q psy2832 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLK---- 311 (362)
Q Consensus 236 ~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~---- 311 (362)
++.|. . +++. + ++..+++.+.+.++++|+++++|++.|+++|..
T Consensus 221 lv~d~-----------~--i~~~-----------------~--~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~ 268 (546)
T PRK14104 221 LINEK-----------K--LSSL-----------------N--ELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLR 268 (546)
T ss_pred EEehh-----------h--hcCH-----------------H--HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCccc
Confidence 66543 1 1111 1 566778899999999999999999999999985
Q ss_pred --CCCeEEeeCC-----hhhHHHHHHHhCCeEccC-----CCCCCCCCCCCCcceEEE
Q psy2832 312 --ANITAIRRVR-----KSDNNRIARACGATIVNR-----TEELREEDVGTGAGLFEI 357 (362)
Q Consensus 312 --~~I~~i~~v~-----~~~l~~la~~tG~~iv~~-----~~~~~~~~lG~~~~~~~~ 357 (362)
.+|+++++++ +.++++||.+||+.++++ +++++++.+|+ |+.+++
T Consensus 269 ~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~-a~~v~~ 325 (546)
T PRK14104 269 GGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGR-AKKVMI 325 (546)
T ss_pred ceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCc-eeEEEE
Confidence 6789998887 799999999999999999 88899899999 788775
No 41
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.96 E-value=1.8e-27 Score=218.39 Aligned_cols=186 Identities=34% Similarity=0.596 Sum_probs=159.3
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCcccccCceEEEeec
Q psy2832 117 FIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDC 196 (362)
Q Consensus 117 ~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~ 196 (362)
....|.+.+++++++|+..+.+.......+|+.+++++.+++|+++.+|++++|+++++.+.++.|++.++||+|+++++
T Consensus 15 ~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~ 94 (261)
T cd03334 15 NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG 94 (261)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee
Confidence 34578999999999999988643221224666556999999999999999999999999888877887777778877777
Q ss_pred ccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhH
Q psy2832 197 TLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLE 276 (362)
Q Consensus 197 ~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~ 276 (362)
+++ +++++ .++.++.++...|++
T Consensus 95 ~Le--------------------------------------------~~~~~-------~~~~~~~~~~~~E~~------ 117 (261)
T cd03334 95 PLE--------------------------------------------YQRVE-------NKLLSLDPVILQEKE------ 117 (261)
T ss_pred eec--------------------------------------------ccccc-------CCHHHHHHHHHHHHH------
Confidence 777 44443 245678888878877
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCC-CCCCCCCCCCCcceE
Q psy2832 277 EEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRT-EELREEDVGTGAGLF 355 (362)
Q Consensus 277 ~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~-~~~~~~~lG~~~~~~ 355 (362)
++.+++++|...++|+|++++||+++|+++|.++||++++++++.+++|||++|||.+++++ +.++++.+|+ |+.|
T Consensus 118 --~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~-~~~v 194 (261)
T cd03334 118 --YLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADIISSMDDLLTSPKLGT-CESF 194 (261)
T ss_pred --HHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHhCCEEecChhhhcCcccCcC-cceE
Confidence 99999999999999999999999999999999999999999999999999999999999995 4788899999 8999
Q ss_pred EEEecCC
Q psy2832 356 EIKKVKT 362 (362)
Q Consensus 356 ~~~~~~~ 362 (362)
+++++|+
T Consensus 195 ~~~~ig~ 201 (261)
T cd03334 195 RVRTYVE 201 (261)
T ss_pred EEEEecC
Confidence 9999873
No 42
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.88 E-value=7.1e-22 Score=176.22 Aligned_cols=161 Identities=47% Similarity=0.746 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccC
Q psy2832 103 SKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKM 182 (362)
Q Consensus 103 ~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m 182 (362)
+.|.++|++++++|. ..|.+.+++++++|+..+..+.. .+..+++.+.+++|+++++|++++|+++++++.++.|
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 468899999999999 99999999999999999965321 2223468999999999999999999999999888888
Q ss_pred cccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 183 RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 183 ~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
++.++||+|++++++++
T Consensus 77 ~~~~~n~~Ill~~~~le--------------------------------------------------------------- 93 (209)
T cd03333 77 PKRLENAKILLLDCPLE--------------------------------------------------------------- 93 (209)
T ss_pred CeEcCCCcEEEEeCCee---------------------------------------------------------------
Confidence 77777777777777666
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
+ +|+++++|++.|+++|.++||+++++++..++++||++||+.++++++.
T Consensus 94 ----------------~--------------vii~~~~I~~~al~~l~~~~I~~v~~~~~~~l~~ia~~tga~ii~~~~~ 143 (209)
T cd03333 94 ----------------Y--------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLED 143 (209)
T ss_pred ----------------E--------------EEEecCcccHHHHHHHHHCCCEEEEeCCHHHHHHHHHHHCCEEeccccc
Confidence 2 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceEEEEecCC
Q psy2832 343 LREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 343 ~~~~~lG~~~~~~~~~~~~~ 362 (362)
++++.+|+ |+.|++.++|+
T Consensus 144 ~~~~~lG~-~~~v~~~~~~~ 162 (209)
T cd03333 144 LTPEDLGT-AELVEETKIGE 162 (209)
T ss_pred CChhhcee-eeEEEEEEECC
Confidence 99999999 79999988764
No 43
>KOG0357|consensus
Probab=99.87 E-value=7.1e-23 Score=184.87 Aligned_cols=170 Identities=37% Similarity=0.582 Sum_probs=155.6
Q ss_pred CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
|++.+.|++++|||| .|++++++...+.+|+.+.|||||.+++|++.+++++.+++.+|+||..|.+||..
T Consensus 56 ~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~ 126 (400)
T KOG0357|consen 56 MLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEK 126 (400)
T ss_pred ccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhh
Confidence 567788999999999 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
+.+.+++.|+ .++.+++
T Consensus 127 ~~~~av~~l~-~i~~~~e-------------------------------------------------------------- 143 (400)
T KOG0357|consen 127 AKVVAVEHLD-EISDPFE-------------------------------------------------------------- 143 (400)
T ss_pred HHHhhhhhhh-hhccccc--------------------------------------------------------------
Confidence 9999999998 6654443
Q ss_pred CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
++
T Consensus 144 -------------------------------------f~----------------------------------------- 145 (400)
T KOG0357|consen 144 -------------------------------------FE----------------------------------------- 145 (400)
T ss_pred -------------------------------------HH-----------------------------------------
Confidence 11
Q ss_pred cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC
Q psy2832 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRV 320 (362)
Q Consensus 241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v 320 (362)
++++++++.++++++|+||.+|.|+|+|-+++.-+++||
T Consensus 146 -----------------------------------------emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwV 184 (400)
T KOG0357|consen 146 -----------------------------------------EMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWV 184 (400)
T ss_pred -----------------------------------------HHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeec
Confidence 013566778999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832 321 RKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT 362 (362)
Q Consensus 321 ~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~ 362 (362)
.-.+++.||-+||+++++|+.+++++++|+ |+.+++..+|+
T Consensus 185 GGpEiEliAiaT~grIVprF~eL~~~kLG~-aglVrE~sfgt 225 (400)
T KOG0357|consen 185 GGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVREISFGT 225 (400)
T ss_pred CCcceEEEEeecCCeeeccHhhhCHhhccc-cceEEEEeccc
Confidence 999999999999999999999999999999 79999888885
No 44
>KOG0356|consensus
Probab=99.73 E-value=2.9e-16 Score=150.86 Aligned_cols=264 Identities=24% Similarity=0.338 Sum_probs=190.0
Q ss_pred CCCCeEEeccHHHHHhhccccChh----hHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832 5 PMGGIVMTNDGNAILREITVQHPA----GKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS 80 (362)
Q Consensus 5 ~~g~~~iTnDg~tIl~~l~~~hP~----akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~ 80 (362)
..|.|.|||||.|+.+++++.+++ |+++.+.+.+.++.+||||||+++|++++..++.+-+.+|.+|..+.+|...
T Consensus 56 ~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~ 135 (550)
T KOG0356|consen 56 SWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIML 135 (550)
T ss_pred ccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHH
Confidence 469999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832 81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160 (362)
Q Consensus 81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~ 160 (362)
+.+...+.|. +++++|. .++++.++|..+. ++.....++..++++++..+ .+ +.+. -|.
T Consensus 136 av~~vv~~L~-k~sk~Vt--t~eeIaqVAtiSA------ngD~~ig~li~~a~~kvG~~-----GV-----Itv~--~gk 194 (550)
T KOG0356|consen 136 AVDAVVDELK-KMSKPVT--TPEEIAQVATISA------NGDKEIGNLISDAMKKVGRK-----GV-----ITVK--DGK 194 (550)
T ss_pred HHHHHHHHHH-HhCCCCC--CHHHHHHHHhhhc------CCcHHHHHHHHHHHHHhCcC-----Ce-----EEee--cCC
Confidence 9999999999 9999998 5788999988654 44566777888999888532 21 2232 366
Q ss_pred Cccc-ceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832 161 TIED-SCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239 (362)
Q Consensus 161 s~~d-S~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~ 239 (362)
++.| -++++|+-|++++.+|.+...-+..++.+ ++|.+++-
T Consensus 195 t~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~-------------------------------------e~~~~ll~- 236 (550)
T KOG0356|consen 195 TLEDELEVIEGMKFDRGYISPYFITSSKKQKVEF-------------------------------------ENALLLLS- 236 (550)
T ss_pred ccccchhhhhcccccccccCccccccchhhhhhh-------------------------------------hhhhhhhh-
Confidence 6654 58999999999998877653322222221 12222211
Q ss_pred ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCC-----
Q psy2832 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANI----- 314 (362)
Q Consensus 240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I----- 314 (362)
+-.++..++ .+.-.+.......|=+|+ ...++..++..|.-++.
T Consensus 237 ------------~kki~~v~~------------------ivp~LE~A~~~~~PLliI-AeDi~~eaL~tLIlNkLk~glq 285 (550)
T KOG0356|consen 237 ------------EKKISSVQS------------------IVPALELALAKRRPLLII-AEDIDGEALATLVLNKLKGGLQ 285 (550)
T ss_pred ------------hhhhhHHHH------------------HhHHHHHhhhccCceEEE-ehhcchhHHHHHHhhhhcccee
Confidence 001111111 222223344455665555 57898887776664332
Q ss_pred -eEEe-----eCChhhHHHHHHHhCCeEccC------CCCCCCCCCCCCcceEEEEe
Q psy2832 315 -TAIR-----RVRKSDNNRIARACGATIVNR------TEELREEDVGTGAGLFEIKK 359 (362)
Q Consensus 315 -~~i~-----~v~~~~l~~la~~tG~~iv~~------~~~~~~~~lG~~~~~~~~~~ 359 (362)
.+++ .-.+..+..++-+||+.++.. ++...++++|. +..+.+.+
T Consensus 286 V~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~-~~evvvtk 341 (550)
T KOG0356|consen 286 VVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGE-VGEVVVTK 341 (550)
T ss_pred EEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCc-ceeEEEec
Confidence 2232 334566999999999988754 34455678998 56665543
No 45
>KOG0230|consensus
Probab=99.64 E-value=1.3e-15 Score=159.95 Aligned_cols=181 Identities=33% Similarity=0.581 Sum_probs=156.9
Q ss_pred cchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCcccccCceEEEeeccc
Q psy2832 119 GKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTL 198 (362)
Q Consensus 119 ~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l 198 (362)
..|.+.+..++++|+..+.++......+|+.+++++++|+||+..+|+++.|+++.+...+..|...+++|+|+++.+++
T Consensus 331 ~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~l 410 (1598)
T KOG0230|consen 331 QEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPL 410 (1598)
T ss_pred hhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecch
Confidence 36889999999999999877655344567778999999999998899999999999999999999999999999999999
Q ss_pred ccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHH
Q psy2832 199 EYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEE 278 (362)
Q Consensus 199 ~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~ 278 (362)
+|..-.. . ...+..+..+|.+
T Consensus 411 eyqrisn----------------------------------------------~-----lsS~etvlqqE~e-------- 431 (1598)
T KOG0230|consen 411 EYQRISN----------------------------------------------Q-----LSSIETVLQQEKE-------- 431 (1598)
T ss_pred hhhhhhc----------------------------------------------c-----ccchHHHHhhHHH--------
Confidence 9652000 0 1123344445655
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEE
Q psy2832 279 YVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIK 358 (362)
Q Consensus 279 ~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~ 358 (362)
+++.++.+|...++|+++..++|...|+++|..+||.++-+++...++|++++|||.|+.+++.+....+|+ |+.|++.
T Consensus 432 ~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~-C~~F~v~ 510 (1598)
T KOG0230|consen 432 YLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGY-CELFRVE 510 (1598)
T ss_pred HHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCC-CccHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 7999876
Q ss_pred e
Q psy2832 359 K 359 (362)
Q Consensus 359 ~ 359 (362)
.
T Consensus 511 ~ 511 (1598)
T KOG0230|consen 511 N 511 (1598)
T ss_pred h
Confidence 5
No 46
>KOG0364|consensus
Probab=99.27 E-value=1.3e-13 Score=129.07 Aligned_cols=212 Identities=20% Similarity=0.275 Sum_probs=155.2
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcc------cceeEeceee
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIE------DSCVLRGVML 173 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~------dS~lv~Giv~ 173 (362)
++++.+.-. +||.++++.|..+.+.++.++..++.+.+..+. -++.++...++. +|.+..++.+
T Consensus 102 E~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~------~km~~vi~~~v~tk~~~~~~~~~~~lal 175 (527)
T KOG0364|consen 102 EMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQ------AKMLRVINSSVGTKFNSRWSDLICNLAL 175 (527)
T ss_pred HHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccH------HHHHhhhhhhhhhhhhhhhcchhhhHHH
Confidence 455555544 588889999999999999999977655443211 122222222222 3445555555
Q ss_pred ccccCCccCcccccCc-eEEEe-ecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccce
Q psy2832 174 NKDVTHPKMRRRIENP-RIVLL-DCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQT 251 (362)
Q Consensus 174 ~~~~~~~~m~~~~~~~-~i~l~-~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~ 251 (362)
++-- .+ ..++. .+++. .+.+++.||+.+.+|++++|+.++++..||+|++.++||||+++||
T Consensus 176 ~avk----~V-~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~----------- 239 (527)
T KOG0364|consen 176 DAVK----TV-GVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDC----------- 239 (527)
T ss_pred HHHH----Hh-hhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecC-----------
Confidence 5310 11 11233 36665 3489999999999999999999999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHH
Q psy2832 252 NVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARA 331 (362)
Q Consensus 252 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~ 331 (362)
++++++.+....+... ..++|+ .+.++++..++.++..|+.-+ .|. +++++|+.++ ..+++.+.
T Consensus 240 ~LeykkGeSqtnve~~---~eed~~--r~Lqieee~v~~mc~~Ii~v~-pDl----VitekG~sdl------a~hyl~k~ 303 (527)
T KOG0364|consen 240 PLEYKKGESQTNVEIV---KEEDFT--RILQIEEEQVQAMCEVIIAVK-PDL----VITEKGVSDL------AQHYLLKA 303 (527)
T ss_pred CccCCCCccccceeee---echhHH--HHHHhhHHHHHHHHHHHHeec-ccE----EEeccchhHH------HHHHHHhc
Confidence 9999988776665432 335677 899999999999999888543 554 4789999766 99999999
Q ss_pred hCCeEccCCCCCCCCCCCCCcce
Q psy2832 332 CGATIVNRTEELREEDVGTGAGL 354 (362)
Q Consensus 332 tG~~iv~~~~~~~~~~lG~~~~~ 354 (362)
|++.++++..-|...+-.+|+.
T Consensus 304 -~iT~~rr~rKtDn~ria~acga 325 (527)
T KOG0364|consen 304 -NITAIRRLRKTDNNRIARACGA 325 (527)
T ss_pred -CchhhhhhhccccchhhhhcCc
Confidence 9999999998887776666554
No 47
>KOG0360|consensus
Probab=99.25 E-value=6.8e-14 Score=132.11 Aligned_cols=205 Identities=17% Similarity=0.144 Sum_probs=126.7
Q ss_pred HHHHHhhcccccchHHHHHHHHHHHHhhh-ccc--cCCcccc-ccccceeEEEcCCCCcccceeEeceeeccccCCccCc
Q psy2832 108 VIKACVGTKFIGKWSDLACNIALDAVQTV-TVE--ESGRKEI-DIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMR 183 (362)
Q Consensus 108 ia~t~l~~k~i~~~~~~~~~l~~~ai~~i-~~~--~~~~~~~-d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~ 183 (362)
+.++-+||..+..+|+.++.-+++.+..- ..+ .-+++.+ +.-+...-.|+.| .+|+++.+++++.-... .+.
T Consensus 110 Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~---~ds~~f~~~Vvda~l~v-~~~ 185 (545)
T KOG0360|consen 110 LVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIG---MDSDFFTEMVVDALLAV-KIL 185 (545)
T ss_pred hhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecc---cchHHHHHHHHHHHHHH-hhc
Confidence 34455788899999999999888887642 222 1222211 1111111123333 24667777766542111 111
Q ss_pred ccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTK 263 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 263 (362)
+.-..+++.+..+++.+.+|+|..||+++.|+.+++. ....-.-...+-+-+-| + ..+++-.+......
T Consensus 186 ~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~---~asq~m~~~i~~~Kiac---l-----d~~Lqk~km~lGv~ 254 (545)
T KOG0360|consen 186 DINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCS---VASQMMPLRIKNAKIAC---L-----DFTLQKTKMKLGVQ 254 (545)
T ss_pred ccCCceeccccceeEEecCCccchhheeecceeeecc---Hhhhccccccccceeee---E-----ecccccccccccce
Confidence 1112467888889999999999999999999998764 00000001111111111 0 11222222222233
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCC
Q psy2832 264 ILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEEL 343 (362)
Q Consensus 264 ~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~ 343 (362)
+... +|++++ +++..+..|.+.+++.|+. .|++. +|++.||.+. .++++-.+ |+++++|+..-
T Consensus 255 vvv~---dp~kle--~ir~~e~~itkeRi~kIl~-~ganv----VLtt~gIddm------c~K~~vea-gamAVrR~~k~ 317 (545)
T KOG0360|consen 255 VVVD---DPEKLE--QIRQREQDITKERIKKILA-TGANV----VLTTGGIDDM------CLKYFVEA-GAMAVRRCKKE 317 (545)
T ss_pred EEEc---ChHHHH--HHHHHHhHhHHHHHHHHHh-cCCcE----EEEcCCccHH------HHHHHHHc-chhhhHHHHHH
Confidence 3322 888998 9999999999999999996 57775 4999999865 99999999 99999998765
Q ss_pred C
Q psy2832 344 R 344 (362)
Q Consensus 344 ~ 344 (362)
+
T Consensus 318 d 318 (545)
T KOG0360|consen 318 D 318 (545)
T ss_pred H
Confidence 4
No 48
>KOG0358|consensus
Probab=99.16 E-value=1.7e-13 Score=126.37 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=140.9
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
.|+..+... +||.+|+..++.++..+++.+..+..+..- .+...+.+.+.++++ |++++ ....+..
T Consensus 109 aLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~vel------sdre~Li~~atTsLn-SKvvS---q~s~lla 178 (534)
T KOG0358|consen 109 ALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVEL------SDRESLIKSATTSLN-SKVVS---QYSSLLA 178 (534)
T ss_pred hHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCccc------CcHHHHHHHHHhHhh-HHHHH---hhccccc
Confidence 455555555 699999999999999999999997654321 112234555667776 66655 1122222
Q ss_pred ccCc---ccccC----ceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeeccccccccccc---
Q psy2832 180 PKMR---RRIEN----PRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGES--- 249 (362)
Q Consensus 180 ~~m~---~~~~~----~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~--- 249 (362)
|.-+ ..+.+ ..+++.++.+.++.||.++|+++++|.++++. .+.+. -+-| .+|.+-
T Consensus 179 pmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~----~~~~~-gptr---------iekAkIglI 244 (534)
T KOG0358|consen 179 PMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQK----ASKSA-GPTR---------IEKAKIGLI 244 (534)
T ss_pred hHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeee----cccCC-Ccch---------hhhceeeEE
Confidence 2111 22333 35899999999999999999999999998764 00000 0001 122222
Q ss_pred ceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHH
Q psy2832 250 QTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIA 329 (362)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la 329 (362)
|..+..++++....+... ++.+|+ ++.+.+.+++-..+..|-. .|.+. +|.|+.|.. ..+++-.+++|+
T Consensus 245 QF~iS~PKtdmen~iiv~---DyaqMd--rilkeER~YiL~mcKkIKk-~gcnv----LliQKSILR-davsDLAlHfL~ 313 (534)
T KOG0358|consen 245 QFQISPPKTDMENQIIVN---DYAQMD--RILKEERQYILNMCKKIKK-AGCNV----LLIQKSILR-DAVSDLALHFLA 313 (534)
T ss_pred EEEecCCCCCcccceEec---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCeE----EEEeHHHHH-HHHHHHHHHHHH
Confidence 345555666666666543 788888 9999999999899998875 56554 478888864 567888999999
Q ss_pred HHhCCeEccCCCCCCCC
Q psy2832 330 RACGATIVNRTEELREE 346 (362)
Q Consensus 330 ~~tG~~iv~~~~~~~~~ 346 (362)
+. .++++.++++.+-+
T Consensus 314 kl-kimvikdieRedie 329 (534)
T KOG0358|consen 314 KL-KIMVIKDIEREDIE 329 (534)
T ss_pred hC-cEEEEccccHhhHH
Confidence 99 99999999886644
No 49
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.06 E-value=8.9e-13 Score=133.15 Aligned_cols=198 Identities=15% Similarity=0.181 Sum_probs=140.5
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCccccee-------EeceeeccccCCccCcc
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCV-------LRGVMLNKDVTHPKMRR 184 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~l-------v~Giv~~~~~~~~~m~~ 184 (362)
-+||..|.++|+.+.+.+.+.++.++.+... +.+ +...+.+++.++++ +++ +.-++++.-.. . .
T Consensus 122 gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~--~~~~l~~ia~t~l~-sK~~~~~~~~ls~i~~~av~~---i-~ 192 (532)
T TIGR02343 122 GIHPIKIAEGFEVAARVAVEHLEEISEEISD--DNN--NKEPLIQAAKTSLG-SKIVSKCHRRFAEIAVDAVLM---V-A 192 (532)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhccccCc--CCC--CHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHh---h-h
Confidence 3688889999999999999999887654321 000 01123334444444 332 22222221110 0 0
Q ss_pred cccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHHH
Q psy2832 185 RIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKI 264 (362)
Q Consensus 185 ~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~ 264 (362)
.....++++.++.+.+.+|++++||++++|++|++.+.|+.||+.+++|||++++| ++++++++....+
T Consensus 193 ~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~-----------~le~~~~~~~~~~ 261 (532)
T TIGR02343 193 DMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTC-----------PFEPPKPKTKHKL 261 (532)
T ss_pred hcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEe-----------eccccccccceeE
Confidence 00123567778899999999999999999999999999999999999999999999 8888877544442
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCC
Q psy2832 265 LQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELR 344 (362)
Q Consensus 265 ~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~ 344 (362)
.. +++++++ .+.+.|++.+...++.+.. .|++.+ +++++|. +..+++|++. |+.++++++..+
T Consensus 262 ~i---~~~~~~~--~~~~~E~~~l~~~l~~i~~-~g~~lv----i~~~~I~------~~al~~L~~~-~i~~v~~~~~~~ 324 (532)
T TIGR02343 262 DI---SSVEEYK--KLQKYEQQKFAEMIDDIKK-SGANIV----ICQWGFD------DEANHLLLQN-DLPAVRWVGGHE 324 (532)
T ss_pred Ee---CCHHHHH--HHHHHHHHHHHHHHHHHHH-cCCCEE----EeCCCcc------HHHHHHHHHC-CcEEEEcCCHHH
Confidence 21 1567777 8899999999988887764 566643 6777775 5699999999 999999887655
Q ss_pred CC
Q psy2832 345 EE 346 (362)
Q Consensus 345 ~~ 346 (362)
.+
T Consensus 325 l~ 326 (532)
T TIGR02343 325 LE 326 (532)
T ss_pred HH
Confidence 44
No 50
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.05 E-value=1.6e-11 Score=112.87 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=103.2
Q ss_pred eEEEee-cccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHHHHHHH
Q psy2832 190 RIVLLD-CTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLE 268 (362)
Q Consensus 190 ~i~l~~-~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e 268 (362)
.+++.+ +.+.+.+|++++||++++|+++++.+.|++||++++||||++++| ++++.+++.
T Consensus 43 ~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~-----------~Le~~~~~~-------- 103 (261)
T cd03334 43 DMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQG-----------PLEYQRVEN-------- 103 (261)
T ss_pred ccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEee-----------eeccccccC--------
Confidence 345543 788999999999999999999999999999999999999999999 999887652
Q ss_pred HHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCCC
Q psy2832 269 EEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREE 346 (362)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~ 346 (362)
++++++ .+.+.+++.+...++.|.. .|++.+ |+++||..+ .++++.++ |++++++++..+.+
T Consensus 104 --~~~~~~--~~~~~E~~~l~~~v~kI~~-~g~nvI----l~~k~I~~~------a~~~l~k~-gI~~v~~v~~~dl~ 165 (261)
T cd03334 104 --KLLSLD--PVILQEKEYLKNLVSRIVA-LRPDVI----LVEKSVSRI------AQDLLLEA-GITLVLNVKPSVLE 165 (261)
T ss_pred --CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCCEE----EECCccCHH------HHHHHHHC-CCEEEEecCHHHHH
Confidence 234455 8889999999999999975 688754 888888654 99999999 99999999876543
No 51
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.01 E-value=3.9e-12 Score=128.36 Aligned_cols=197 Identities=18% Similarity=0.213 Sum_probs=139.3
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccce--------eEeceeeccccCCccCc
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSC--------VLRGVMLNKDVTHPKMR 183 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~--------lv~Giv~~~~~~~~~m~ 183 (362)
-+||..+.++|+.+.+.+.+.+..++.+.+..+ ...+.+++.++++ |+ .+..++.++-. .+.
T Consensus 111 gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~------~~~L~~ia~tsl~-sk~~~~~~~~~ls~l~~~A~~---~v~ 180 (519)
T TIGR02339 111 GIHPTVIIEGYRKAAEKALEIIDEIATKISPED------RDLLKKVAETSLT-GKASAEVTKDKLANLVVEAVK---QVA 180 (519)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhccccCccc------HHHHHHHHHhhhc-cccccchhHHHHHHHHHHHHH---HHh
Confidence 468888999999999999999988865432211 1123344444443 33 33334333210 000
Q ss_pred ccccCc--eEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHH
Q psy2832 184 RRIENP--RIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEF 261 (362)
Q Consensus 184 ~~~~~~--~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~ 261 (362)
....+. .+++.++.+.+.+|+++.+|++++|++|++.+.||+||++++||||++++| ++++.+++..
T Consensus 181 ~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~-----------~Le~~~~~~~ 249 (519)
T TIGR02339 181 EKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDA-----------PLEVEKTEID 249 (519)
T ss_pred hhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEec-----------cccccccccc
Confidence 000112 355567778889999999999999999999999999999999999999999 8888887654
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCC
Q psy2832 262 TKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTE 341 (362)
Q Consensus 262 ~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~ 341 (362)
.++... +++++. .+.+.++++++..++.+.. .|++.+ +++++|. +..+++|.+. |+.++.+++
T Consensus 250 ~~~~i~---~~~~~~--~~l~~E~~~i~~~v~~i~~-~g~~lv----i~~~~I~------~~al~~L~~~-gI~~v~~v~ 312 (519)
T TIGR02339 250 AKIRIT---DPDQIK--KFLDQEEAMLKEMVDKIAD-AGANVV----FCQKGID------DLAQHYLAKA-GILAVRRVK 312 (519)
T ss_pred eEEEEC---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCcEE----EECCCcc------HHHHHHHHHC-CCEEEecCC
Confidence 443211 556666 8899999999999988874 566643 6777774 5699999988 999999887
Q ss_pred CCCCC
Q psy2832 342 ELREE 346 (362)
Q Consensus 342 ~~~~~ 346 (362)
..+.+
T Consensus 313 ~~~L~ 317 (519)
T TIGR02339 313 KSDIE 317 (519)
T ss_pred HHHHH
Confidence 64433
No 52
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.00 E-value=1.2e-12 Score=132.23 Aligned_cols=199 Identities=13% Similarity=0.174 Sum_probs=138.5
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeE-------eceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVL-------RGVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv-------~Giv~~~~~~~~~m~ 183 (362)
.-+||..|.++|+.+.+.+.+.+..++.+.+.. ..+ ...+.+++.++++ |++. ..++.+.-. .+
T Consensus 117 ~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~-~~~---~~~l~~ia~tsl~-sk~~~~~~~~~s~i~v~av~---~i- 187 (526)
T cd03339 117 RGIHPIRIADGYEQACKIAVEHLEEIADKIEFS-PDN---KEPLIQTAMTSLG-SKIVSRCHRQFAEIAVDAVL---SV- 187 (526)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhccccCCC-ccc---HHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHH---HH-
Confidence 347888899999999999999998876543210 001 1123344444544 3422 222222100 00
Q ss_pred ccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTK 263 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 263 (362)
.......+.+.++.+.+.+|+++.||++++|++|++.+.|++||++++||||++++| +++++.++...+
T Consensus 188 ~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~-----------~le~~~~~~~~~ 256 (526)
T cd03339 188 ADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTC-----------PFEPPKPKTKHK 256 (526)
T ss_pred hhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEe-----------cccCCccccceE
Confidence 000122455667889999999999999999999999999999999999999999999 888877654333
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCC
Q psy2832 264 ILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEEL 343 (362)
Q Consensus 264 ~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~ 343 (362)
+.. +++++++ .+.+.+++.+...++.+.. .|++.+ +++++| ++..+++|.+. |+.++++++..
T Consensus 257 ~~i---~s~~~~~--~~~~~E~~~i~~~v~~i~~-~g~~lv----i~~~~I------~~~al~~L~~~-~I~av~~v~~~ 319 (526)
T cd03339 257 LDI---TSVEDYK--KLQEYEQKYFREMVEQVKD-AGANLV----ICQWGF------DDEANHLLLQN-GLPAVRWVGGV 319 (526)
T ss_pred EEe---CCHHHHH--HHHHHHHHHHHHHHHHHHH-CCCCEE----EeCCCC------CHHHHHHHHHC-CCEEEEeCCHH
Confidence 211 1566777 8999999999888887764 566543 666666 45699999999 99999998765
Q ss_pred CCC
Q psy2832 344 REE 346 (362)
Q Consensus 344 ~~~ 346 (362)
+.+
T Consensus 320 ~Le 322 (526)
T cd03339 320 EIE 322 (526)
T ss_pred HHH
Confidence 543
No 53
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.96 E-value=2e-12 Score=130.64 Aligned_cols=201 Identities=20% Similarity=0.227 Sum_probs=137.7
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcc------cceeEeceeeccccCCccCcc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIE------DSCVLRGVMLNKDVTHPKMRR 184 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~------dS~lv~Giv~~~~~~~~~m~~ 184 (362)
.-+||..|.++|+.+.+.+.+.++.++.+.+.. | ...+.+++.++++ +...+..+++++-... .+.
T Consensus 110 ~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~---~---~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v--~~~ 181 (525)
T TIGR02344 110 QNIHPTIIIRAYKKALDDALSVLEEISIPVDVN---D---DAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTV--KRD 181 (525)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhccccCCC---C---HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHh--hcc
Confidence 447888999999999999999998876543211 1 1112333333333 1233444444431100 000
Q ss_pred c-ccCceEEEee-cccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 185 R-IENPRIVLLD-CTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 185 ~-~~~~~i~l~~-~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
. -....+++.+ +.+++.+|++++||++++|+++++.+.|++||++++||||+++++ ++++.+++...
T Consensus 182 ~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~-----------~Le~~~~~~~~ 250 (525)
T TIGR02344 182 LGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDC-----------PLEYKKGESQT 250 (525)
T ss_pred ccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEec-----------ccccccccccc
Confidence 0 0001223222 467788999999999999999999999999999999999999999 88887766544
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
.+... ++++++ .+.+.+++.+...++.|.. .|++. ++++++|.. ..+++|+++ |+.++.+++.
T Consensus 251 ~i~i~---~~~~~~--~~l~~E~~~l~~~v~~i~~-~~~~v----Ii~~k~I~d------la~~~l~~~-~I~av~~v~~ 313 (525)
T TIGR02344 251 NVEIM---KEEDWN--RILQMEEEYVQLMCEDIIA-VKPDL----VITEKGVSD------LAQHYLLKA-NISAIRRVRK 313 (525)
T ss_pred eEEeC---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCCE----EEeCCCccH------HHHHHHhHC-CceEEecCCH
Confidence 43221 456666 8889999999999998875 57664 477888765 499999997 9999999887
Q ss_pred CCCCC
Q psy2832 343 LREED 347 (362)
Q Consensus 343 ~~~~~ 347 (362)
.+.+.
T Consensus 314 ~~Ler 318 (525)
T TIGR02344 314 TDNNR 318 (525)
T ss_pred HHHHH
Confidence 55443
No 54
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.94 E-value=1.9e-12 Score=130.86 Aligned_cols=200 Identities=17% Similarity=0.182 Sum_probs=136.9
Q ss_pred HHhhcccccchHHHHHHHHHHHHhh-hccccCCccccccccceeEEEcCCCCccccee-------EeceeeccccCCccC
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQT-VTVEESGRKEIDIKRYAKVEKIPGGTIEDSCV-------LRGVMLNKDVTHPKM 182 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~-i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~l-------v~Giv~~~~~~~~~m 182 (362)
.-+||..+.++|+.+.+.+.+.++. +..+.+.. |. ..+.+++.++++ |++ +..++.++-... ..
T Consensus 102 ~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~---~~---~~l~~ia~tsl~-sK~~~~~~~~ls~l~~~A~~~v-~~ 173 (527)
T cd03335 102 QKIHPTTIISGYRLACKEAVKYIKEHLSISVDNL---GK---ESLINVAKTSMS-SKIIGADSDFFANMVVDAILAV-KT 173 (527)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcc---CH---HHHHHHHHHHhc-ccccchhHHHHHHHHHHHHHHh-hc
Confidence 3468888899999999999999985 55443210 11 112333344433 333 333333321000 00
Q ss_pred cccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 183 RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 183 ~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
........+.+.++.+.+.+|+++.+|++++|++|++.+.|++||++++||||++++| +++..+++...
T Consensus 174 ~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~-----------~Le~~~~~~~~ 242 (527)
T cd03335 174 TNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDF-----------NLQKTKMKLGV 242 (527)
T ss_pred ccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEec-----------cCCCCccccce
Confidence 0000011356667788899999999999999999999999999999999999999999 88776655444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
.+.. +++++++ .+.+.++++++..++.+.. .|++.+ +++++|. +..+++|.+. |+.++++++.
T Consensus 243 ~~~~---~~~~~le--~~~~~E~~~l~~~i~~i~~-~g~~lv----i~~k~I~------d~al~~L~~~-~I~~v~~v~~ 305 (527)
T cd03335 243 QVVV---TDPEKLE--KIRQRESDITKERIKKILA-AGANVV----LTTGGID------DMCLKYFVEA-GAMAVRRVKK 305 (527)
T ss_pred eEEe---CCHHHHH--HHHHHHHHHHHHHHHHHHH-cCCCEE----EeCCCCc------HHHHHHHHHC-CcEEEEeCCH
Confidence 4321 1566676 8889999999888888864 566643 6777775 5699999999 9999998876
Q ss_pred CCCC
Q psy2832 343 LREE 346 (362)
Q Consensus 343 ~~~~ 346 (362)
.+.+
T Consensus 306 ~~le 309 (527)
T cd03335 306 EDLR 309 (527)
T ss_pred HHHH
Confidence 5443
No 55
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.93 E-value=6.8e-12 Score=126.47 Aligned_cols=203 Identities=15% Similarity=0.138 Sum_probs=141.7
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEe-------ceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLR-------GVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~-------Giv~~~~~~~~~m~ 183 (362)
.-+||..|.++|+.+.+.+.+.+..+..+.+.. | ...+.+++.++++ |++.. -++.++-. ...
T Consensus 103 ~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~---~---~~~l~~va~tsl~-sK~~~~~~~~ls~l~~~a~~---~v~ 172 (517)
T TIGR02342 103 RGIHPTTISESFQIAADEAIKILDEMSIPVDLS---D---REILIKSATTSLS-SKVVSQYSSLLAPLAVDAVL---KVI 172 (517)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhccccCcc---C---HHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHH---HHh
Confidence 347888899999999999999998876543211 1 1123444455554 55442 23332200 000
Q ss_pred ccccCceEEEeecccccccCCCccceeeeccccccccccc-chhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTH-PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~-~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
..-.+..+.+.++.+.+.+|+++++|++++|++|++.+.| ++||++++||||++++| +++..+++...
T Consensus 173 ~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~-----------~Le~~~~~~~~ 241 (517)
T TIGR02342 173 DPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQF-----------QISPPKTDMEN 241 (517)
T ss_pred ccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEec-----------CCCCCcccccc
Confidence 0001235677788899999999999999999999999999 49999999999999999 77776655444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
.+... ++++++ .+.+.+++.+...++.+.. .|++.+ +++++|. -..++...+++++++ |+.++++++.
T Consensus 242 ~~~~~---~~~~~~--~~~~~E~~~l~~~v~~i~~-~g~~lv----i~~~~I~-~~~l~~l~~~~l~~~-~I~av~~v~~ 309 (517)
T TIGR02342 242 QVIVN---DYAQMD--RVLKEERKYILNIVKKIKK-TGCNVL----LIQKSIL-RDAVNDLALHFLAKM-KIMVVKDIER 309 (517)
T ss_pred eEEeC---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCCEE----EECCCcc-cccccHHHHHHHhhC-CceEEecCCH
Confidence 44321 556666 8888888888888888864 577643 7788884 234566789999997 9999998876
Q ss_pred CCCC
Q psy2832 343 LREE 346 (362)
Q Consensus 343 ~~~~ 346 (362)
.+.+
T Consensus 310 ~~Le 313 (517)
T TIGR02342 310 EEVE 313 (517)
T ss_pred HHHH
Confidence 5443
No 56
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=98.92 E-value=7.8e-12 Score=126.24 Aligned_cols=198 Identities=20% Similarity=0.243 Sum_probs=137.6
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcc------cceeEeceeeccccCCccCccc
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIE------DSCVLRGVMLNKDVTHPKMRRR 185 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~------dS~lv~Giv~~~~~~~~~m~~~ 185 (362)
-+||..+.++|+.+.+.+.+.+..++.+.+..+. ..+..++.+++. ++..+..++.++-... +...
T Consensus 110 gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~------~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v--~~~~ 181 (517)
T cd03343 110 NIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDK------DTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQV--AEKR 181 (517)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCH------HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHh--hhcc
Confidence 3678888899999999999999888654421110 112233333333 1233344444331100 0000
Q ss_pred ccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHHHH
Q psy2832 186 IENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKIL 265 (362)
Q Consensus 186 ~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~ 265 (362)
.....+++.++.+.+.+|+++++|++++|++|++.+.||.||++++||||+++++ ++++.+++...++.
T Consensus 182 ~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~-----------~Le~~k~~~~~~~~ 250 (517)
T cd03343 182 DGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDA-----------PLEVKKTEIDAKIR 250 (517)
T ss_pred CCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEec-----------cccCCccccceeEE
Confidence 0001355667788889999999999999999999999999999999999999999 88888776554432
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCC
Q psy2832 266 QLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELRE 345 (362)
Q Consensus 266 ~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~ 345 (362)
.. +++++. .+.+.+++.++..++.+.. .|++.+ +++++|. +..+++|.+. |+.++++++..+.
T Consensus 251 i~---s~~~~~--~~~~~E~~~i~~~v~~i~~-~g~~lv----i~~~~I~------~~al~~l~~~-gI~~v~~v~~~~l 313 (517)
T cd03343 251 IT---SPDQLQ--AFLEQEEAMLKEMVDKIAD-TGANVV----FCQKGID------DLAQHYLAKA-GILAVRRVKKSDM 313 (517)
T ss_pred eC---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCCEE----EeCCCcc------HHHHHHHhHC-CcEEEEeCCHHHH
Confidence 21 566777 8899999999999988874 566643 6676664 5699999998 9999998876443
No 57
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=98.88 E-value=2.4e-11 Score=122.88 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=134.6
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeE-------eceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVL-------RGVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv-------~Giv~~~~~~~~~m~ 183 (362)
.-+||..|.++|+.+.+.+.+.++.++.+.+..+. .. ...+.+++.++++ |++. .-++++. .
T Consensus 121 ~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~--~~-~~~l~~va~t~l~-sk~~~~~~~~l~~i~~~a-------v 189 (533)
T PTZ00212 121 QKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEE--KF-KEDLLNIARTTLS-SKLLTVEKDHFAKLAVDA-------V 189 (533)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccch--hh-HHHHHHHHHHHhc-ccccchhHHHHHHHHHHH-------H
Confidence 34688899999999999999999888654422110 00 0123334444444 4422 2222211 0
Q ss_pred ccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHH-HH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAE-FT 262 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~-~~ 262 (362)
..+.+ .+.+.++.+.+.+|+++.+|++++|+++++++.|+ ||++++||||++++| ++++++++. ..
T Consensus 190 ~~i~~-~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~-~~~~i~n~kIll~~~-----------~Le~~k~~~~~~ 256 (533)
T PTZ00212 190 LRLKG-SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVG-QPKRLENCKILVANT-----------PMDTDKIKIYGA 256 (533)
T ss_pred HHHhc-cCCccceEEEEecCcCccccEEEEeEEEecccCCC-CCccccCCcEEEEeC-----------CCCCCcccccCc
Confidence 11111 34556678899999999999999999999998874 799999999999999 888877653 11
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
++.. ++++++. .+.+.+++.++..+..|+. .|++.+ +++++|.. ..+++|+++ |+.++++++.
T Consensus 257 ~~~i---~~~~~~~--~l~~~E~~~i~~~v~~Ii~-~gv~vv----v~~~~I~d------~a~~~L~~~-~I~avr~v~~ 319 (533)
T PTZ00212 257 KVKV---DSMEKVA--EIEAAEKEKMKNKVDKILA-HGCNVF----INRQLIYN------YPEQLFAEA-GIMAIEHADF 319 (533)
T ss_pred eEEe---CCHHHHH--HHHHHHHHHHHHHHHHHHh-cCCeEE----EeCCCccH------HHHHHHHHC-CCEEEecCCH
Confidence 1110 1445555 8888899999889999985 577653 67887754 489999999 9999998876
Q ss_pred CCCC
Q psy2832 343 LREE 346 (362)
Q Consensus 343 ~~~~ 346 (362)
.+.+
T Consensus 320 ~~l~ 323 (533)
T PTZ00212 320 DGME 323 (533)
T ss_pred HHHH
Confidence 5433
No 58
>KOG0361|consensus
Probab=98.86 E-value=1.2e-11 Score=114.40 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=153.3
Q ss_pred HHHHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeecccc
Q psy2832 102 RSKLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV 177 (362)
Q Consensus 102 ~~~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~ 177 (362)
-.++++.++.+ +|+..|...|+.+..++++-++.+....++....... .-+.|++++.++ |+++. -++.|
T Consensus 101 a~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r--~lL~KcA~T~ls-SKlI~---~ek~f 174 (543)
T KOG0361|consen 101 AAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELR--ELLEKCAATALS-SKLIR---QEKEF 174 (543)
T ss_pred HHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHH--HHHHHHHHHHhh-hhhhh---hhHHH
Confidence 35677888877 4777889999999999999999998765432221111 235678899888 88887 56666
Q ss_pred CCccCc-cccc--CceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEE
Q psy2832 178 THPKMR-RRIE--NPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVE 254 (362)
Q Consensus 178 ~~~~m~-~~~~--~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~ 254 (362)
+. .|+ ..+. +....+..+.+.+.+||++.||.+++|+.|+|+|+|+++.- .||-. .| ++---.+.+++
T Consensus 175 F~-~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEq---qPKk~-~N----pkIl~LnvELE 245 (543)
T KOG0361|consen 175 FA-KMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQ---QPKKF-LN----PKILLLNVELE 245 (543)
T ss_pred HH-HHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhh---Ccccc-CC----ceEEEEeeeee
Confidence 65 343 2221 23345566789999999999999999999999999998631 22210 00 01111255778
Q ss_pred EcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCC
Q psy2832 255 IVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGA 334 (362)
Q Consensus 255 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~ 334 (362)
.+...+..+++.. .+++++ .+-+.+|+|+..+.+.|.. .|.+. +|.+..|-++ .-+++|.. ++
T Consensus 246 lKaEkdNAEiRv~---~v~eyQ--~iVDAEW~Ii~~KL~ki~~-sGAnV----VLSkLpIGD~------ATQyFAdr-di 308 (543)
T KOG0361|consen 246 LKAEKDNAEIRVD---NVEEYQ--AIVDAEWNIIYDKLDKIHE-SGANV----VLSKLPIGDL------ATQYFADR-DI 308 (543)
T ss_pred ecccccCceeecC---CHHHHH--HHHhHHHHHHHHHHHHHHh-cCCeE----EEecccchHH------HHHHhhcc-Cc
Confidence 8877777777654 788888 9999999999999999985 57554 4788888766 89999999 88
Q ss_pred eEccCCCCCCC
Q psy2832 335 TIVNRTEELRE 345 (362)
Q Consensus 335 ~iv~~~~~~~~ 345 (362)
..-.|+...|.
T Consensus 309 FCAGRV~~eDl 319 (543)
T KOG0361|consen 309 FCAGRVPEEDL 319 (543)
T ss_pred eecCcCCHHHH
Confidence 88877766554
No 59
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.84 E-value=1.1e-11 Score=125.37 Aligned_cols=199 Identities=18% Similarity=0.163 Sum_probs=134.4
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhh-ccccCCccccccccceeEEEcCCCCcccce-------eEeceeeccccCCccC
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTV-TVEESGRKEIDIKRYAKVEKIPGGTIEDSC-------VLRGVMLNKDVTHPKM 182 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i-~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~-------lv~Giv~~~~~~~~~m 182 (362)
.-+||..|.++|+.+.+.+.+.+... ..+.+.. +. ..+.+++.++++ |+ .+..+++++-... .+
T Consensus 106 ~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~---~~---~~l~~va~tsl~-sK~~~~~~~~ls~l~~~A~~~v-~~ 177 (536)
T TIGR02340 106 RKVHPTSIISGYRLACKEAVKYIKENLSVSVDEL---GR---EALINVAKTSMS-SKIIGLDSDFFSNIVVDAVLAV-KM 177 (536)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcc---cH---HHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHHH-hc
Confidence 34788889999999999999999863 4433210 10 112233333333 33 2333333220000 00
Q ss_pred cccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 183 RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 183 ~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
...-....+.+.++.+.+.+|+++.+|++++|++|++.+.|++||+++++|||++++| +++..+++...
T Consensus 178 ~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~-----------~L~~~~~~~~~ 246 (536)
T TIGR02340 178 TNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDF-----------NLQKQKMALGV 246 (536)
T ss_pred ccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEec-----------CCCCCcccCce
Confidence 0000001356678888999999999999999999999999999999999999999999 77766555433
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
++.. +++++++ .+.+.++.++...++.+.. .|++.+ ++++||.. ..+++|.++ |+.++++++.
T Consensus 247 ~~~~---~~~~~le--~~~~~E~~~i~~~i~~I~~-~g~~lv----i~~k~I~~------~a~~~L~k~-~I~~i~rv~~ 309 (536)
T TIGR02340 247 QIVV---DDPAKLE--GIRQREADITKERIKKILK-AGANVV----LTTGGIDD------MCLKYFVEA-GAMGVRRCKK 309 (536)
T ss_pred eEEe---CCHHHHH--HHHHHHHHHHHHHHHHHHH-cCCCEE----EeCCCCcH------HHHHHHHHC-CcEEEecCCH
Confidence 3321 1556676 8888888888888887653 566643 67778764 499999999 9999999776
Q ss_pred CCC
Q psy2832 343 LRE 345 (362)
Q Consensus 343 ~~~ 345 (362)
.+.
T Consensus 310 ~~L 312 (536)
T TIGR02340 310 EDL 312 (536)
T ss_pred HHH
Confidence 443
No 60
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.84 E-value=5.3e-11 Score=120.02 Aligned_cols=195 Identities=17% Similarity=0.146 Sum_probs=135.9
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeE-------eceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVL-------RGVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv-------~Giv~~~~~~~~~m~ 183 (362)
.-+||..|.++|+.+.+.+.+.+.....+.+.... +. ...+.+++.++++ |++. ..+++++-
T Consensus 109 ~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~-~~--~~~l~~ia~t~ls-sk~~~~~~~~l~~l~~~A~------- 177 (517)
T cd03336 109 QKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEE-AF--REDLLNIARTTLS-SKILTQDKEHFAELAVDAV------- 177 (517)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccc-hh--HHHHHHHHHhhcc-ccccchhHHHHHHHHHHHH-------
Confidence 34688889999999999999999887654321000 00 0123344444444 4432 22333220
Q ss_pred ccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHH-HH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAE-FT 262 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~-~~ 262 (362)
..+. ..+.+.++.+.+.+|+++.+|++++|+++++.+.++ ||++++||||+++++ ++++++++. ..
T Consensus 178 ~~v~-~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~-~~~~~~n~kIli~~~-----------~le~~~~~~~~~ 244 (517)
T cd03336 178 LRLK-GSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN-QPKRIENAKILIANT-----------PMDTDKIKIFGA 244 (517)
T ss_pred HHhh-ccCCccceeEEEccCCCccceEEEeeEEEecccCCC-CCCeeccccEEEEec-----------CCCcccccccCc
Confidence 1121 134556778999999999999999999999998774 799999999999999 888777653 22
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
++.. .+++++. .+.+.+++.+...++.|+. .|++.+ +++++|. +...++|+++ |+.++++++.
T Consensus 245 ~~~~---~~~~~~~--~l~~~E~~~~~~~v~~I~~-~gv~~v----~~~~~I~------~~~~~~l~~~-~I~av~~v~~ 307 (517)
T cd03336 245 KVRV---DSTAKVA--EIEEAEKEKMKNKVEKILK-HGINCF----INRQLIY------NYPEQLFADA-GIMAIEHADF 307 (517)
T ss_pred eEEe---CCHHHHH--HHHHHHHHHHHHHHHHHHh-cCCeEE----EeCCCcc------HHHHHHHHHC-CcEEEecCCH
Confidence 2211 1445555 7888899999889999985 677754 6777875 4589999999 9999999876
Q ss_pred CCCC
Q psy2832 343 LREE 346 (362)
Q Consensus 343 ~~~~ 346 (362)
.+.+
T Consensus 308 ~~L~ 311 (517)
T cd03336 308 DGVE 311 (517)
T ss_pred HHHH
Confidence 5433
No 61
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-10 Score=114.55 Aligned_cols=207 Identities=15% Similarity=0.189 Sum_probs=144.2
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCcccccCceE
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRI 191 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i 191 (362)
-+||..|.++|+.+.+.+++.++.++.+....+. +. .+.+..+.+.+.+....+..++.++ | ..+.+..-
T Consensus 106 gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~-~~--~~~~t~v~sk~~~~~~~i~~lv~~A------v-~~v~~~~~ 175 (524)
T COG0459 106 GIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEE-EL--KIAITSVASKSANSDEEIGELVVEA------V-EKVGKEQS 175 (524)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchh-hh--hhhhheeeeeeccChHHHHHHHHHH------H-HHhccccc
Confidence 3699999999999999999999999766542110 00 0112222222222113333333332 1 11211111
Q ss_pred EEeecccccccCCCccceeeeccccccc-ccccchhh-ccccCcceeeecccccccccccceeEEEcCHHHHHHHHHHHH
Q psy2832 192 VLLDCTLEYKKGESQTNVEIVNESDWRR-SVTHPKMR-RRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEE 269 (362)
Q Consensus 192 ~l~~~~l~~~~g~s~~~s~l~~G~~~~~-~~~~~~~~-~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~ 269 (362)
++.++.+.+..|++.+++.+++|++||+ .++|++|| +.++||+|+++|+ +++..++....++...
T Consensus 176 d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~-----------~l~~~k~~l~~e~~i~-- 242 (524)
T COG0459 176 DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDK-----------KLEIKKPELPLEIVIS-- 242 (524)
T ss_pred ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEcc-----------ccccccccCcceeEec--
Confidence 5667788999999999999999999999 99999999 8999999999999 8887776665555432
Q ss_pred HHhhhhHHHHHHHHHH-HHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCC---
Q psy2832 270 EYVEKLEEEYVEKVCN-DIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELRE--- 345 (362)
Q Consensus 270 ~~~~~~~~~~~~~~~~-~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~--- 345 (362)
++.++. .+.+.++ ..+...+.-++ ..|.+. ..+++.||.+ ...++|++. |+...+++...+.
T Consensus 243 -~~~~l~--~i~e~ee~e~l~~~v~ni~-~~g~~~---vvv~~~gi~D------~~~~~L~d~-~Ilt~~~v~~~dl~~~ 308 (524)
T COG0459 243 -SGKPLL--IIAEDEEGEALATLVVNIL-RGGANV---VVVKAPGIDD------LAKAYLEDI-AILTGRRVKKEDLGER 308 (524)
T ss_pred -CccHHH--HHHHHHHHHHHHHHHHHHH-hcCCCE---EEEECCCCcH------HHHHHHHhh-cceecceecchhhHHH
Confidence 667777 8888888 78888777777 467772 2478888764 489999999 9999999887665
Q ss_pred -CCCCCCcceEE
Q psy2832 346 -EDVGTGAGLFE 356 (362)
Q Consensus 346 -~~lG~~~~~~~ 356 (362)
..+|. |..+.
T Consensus 309 l~~~~g-a~~v~ 319 (524)
T COG0459 309 LAKLGG-AKIVS 319 (524)
T ss_pred HHHccC-ceEEe
Confidence 24554 45554
No 62
>KOG0363|consensus
Probab=98.82 E-value=4.2e-11 Score=110.20 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=140.2
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCC-ccccccccceeEEEcCCCCcccceeEeceeeccccC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESG-RKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVT 178 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~-~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~ 178 (362)
+|++-|... +||..|..+|+.+...+.+++...+++... ...+ + ..+.+++.++++ |++++ .+++.+
T Consensus 103 eLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kf---r-~DLl~iarTTL~-SKiLs---q~kehF 174 (527)
T KOG0363|consen 103 ELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKF---R-EDLLKIARTTLS-SKILS---QDKEHF 174 (527)
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHH---H-HHHHHHHHHHHH-HHHHH---hhHHHH
Confidence 455555544 688899999999999999999988776432 1111 0 224677888888 88776 555544
Q ss_pred CccCccccc--CceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEc
Q psy2832 179 HPKMRRRIE--NPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIV 256 (362)
Q Consensus 179 ~~~m~~~~~--~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~ 256 (362)
..--+..+. .++-.+..+.+.++.||++.||+|-+|+.++|.+.- ..|++++||||++.|. ++.-.
T Consensus 175 aelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT-----------~mDtD 242 (527)
T KOG0363|consen 175 AELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANT-----------PMDTD 242 (527)
T ss_pred HHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC-CCcccccccceEEecC-----------CCccc
Confidence 321122221 244567788999999999999999999999998764 3489999999999988 33333
Q ss_pred CHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCe
Q psy2832 257 NEAEF-TKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGAT 335 (362)
Q Consensus 257 ~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~ 335 (362)
+.+-| .++... +..++. .+...++.-++.+++.|+ +.|++.. ++++=|.. ...+.++.+ |++
T Consensus 243 KvKvfGarvrVd---s~~kla--elE~AEkeKmK~KV~kI~-~hgiN~F----iNRQLiYn------yPeqLf~da-gi~ 305 (527)
T KOG0363|consen 243 KVKVFGARVRVD---STAKLA--ELEKAEKEKMKEKVEKIL-KHGINVF----INRQLIYN------YPEQLFADA-GIM 305 (527)
T ss_pred ceeeecceEeec---chhHHH--HHHHHHHHHHHHHHHHHH-hcCCcEE----eehhHhhc------CHHHHHhhc-Ccc
Confidence 32222 222211 555666 888888888999999997 4677764 45554543 378888888 999
Q ss_pred EccCCCC
Q psy2832 336 IVNRTEE 342 (362)
Q Consensus 336 iv~~~~~ 342 (362)
.+..-+-
T Consensus 306 aIEHADF 312 (527)
T KOG0363|consen 306 AIEHADF 312 (527)
T ss_pred eeecccc
Confidence 9876553
No 63
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.82 E-value=1.2e-11 Score=124.84 Aligned_cols=197 Identities=13% Similarity=0.174 Sum_probs=135.5
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeE-------eceeeccccCCccCcc
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVL-------RGVMLNKDVTHPKMRR 184 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv-------~Giv~~~~~~~~~m~~ 184 (362)
-+||..+.++|+.+.+.+.+.+..++.+... ..|. ..+.+++.++++ |++. ..+++++- .
T Consensus 111 gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~---~~l~~ia~tsl~-sK~~~~~~~~ls~iv~~Av-------~ 177 (531)
T TIGR02347 111 GIHPRILTEGFEIARGELLEFLDKFKIKTED--EVDR---ELLLNVARTSLR-TKLPIDLADQLTEIVVDAV-------L 177 (531)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCH---HHHHHHHHHHhc-cccchhhHHHHHHHHHHHH-------H
Confidence 3688899999999999999999887643210 0011 123334444443 3333 33333320 1
Q ss_pred cc-cC-ceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 185 RI-EN-PRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 185 ~~-~~-~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
.+ .+ .++.+.++.+.+.+|++..+|++++|++|++.+.||.||++++||||++++| +++..+++...
T Consensus 178 ~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~-----------~le~~~~~~~~ 246 (531)
T TIGR02347 178 AIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNV-----------SLEYEKTEVNS 246 (531)
T ss_pred HHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeC-----------CCCCCccccCc
Confidence 11 11 2366666777789999999999999999999999999999999999999999 88777666555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCC--CC----CHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeE
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK--GI----SDLAQHFLLKANITAIRRVRKSDNNRIARACGATI 336 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~--gi----~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~i 336 (362)
.+... ++++++ .+...+++.++..++.|+..+ .+ +. ...+++++|| ++..+++|++. |+.+
T Consensus 247 ~~~~~---~~~~~~--~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~-~~lvi~~k~I------~~~a~~~L~~~-~I~~ 313 (531)
T TIGR02347 247 GFFYS---NAEQRE--KLVEAERKFVDDRVKKIIELKKKVCGKSPDK-GFVVINQKGI------DPPSLDLLAKE-GIMA 313 (531)
T ss_pred eEEEc---CHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccCCCc-cEEEEeCCCc------cHHHHHHHHHC-CceE
Confidence 54322 566777 899999999888888886422 01 11 1123455665 56699999999 9999
Q ss_pred ccCCCCCCC
Q psy2832 337 VNRTEELRE 345 (362)
Q Consensus 337 v~~~~~~~~ 345 (362)
+++++..+.
T Consensus 314 i~rv~~~~l 322 (531)
T TIGR02347 314 LRRAKRRNM 322 (531)
T ss_pred EccCCHHHH
Confidence 999765443
No 64
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.76 E-value=7e-11 Score=119.39 Aligned_cols=196 Identities=16% Similarity=0.194 Sum_probs=133.1
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeE-------eceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVL-------RGVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv-------~Giv~~~~~~~~~m~ 183 (362)
.-+||..+.++|+.+.+.+.+.++.++.+.+..+. ......+.+++.++++ |++. ..+++++-
T Consensus 110 ~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~--~~~~~~l~~ia~t~l~-sK~~~~~~~~l~~l~~~A~------- 179 (522)
T cd03340 110 DGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDK--EEQRELLEKCAATALN-SKLIASEKEFFAKMVVDAV------- 179 (522)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccc--cccHHHHHHHHHHHhc-cCcchhHHHHHHHHHHHHH-------
Confidence 34688889999999999999999887654432100 0000113344444444 3433 23333220
Q ss_pred ccccCceEEEeecccccccCCCccceeeecccccccccccch---hhccccCcceeeecccccccccccceeEEEcCHHH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPK---MRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAE 260 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~---~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~ 260 (362)
..+. ++.....+.+.+.+|+++.+|++++|++|++.+.+|. ||++++||||+++++ ++++.+++.
T Consensus 180 ~~v~-~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~-----------~Le~~~~~~ 247 (522)
T cd03340 180 LSLD-DDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNV-----------ELELKAEKD 247 (522)
T ss_pred HHhc-ccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeC-----------CCCCCcccc
Confidence 1111 2334456778888999999999999999999999876 499999999999999 777766554
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCC
Q psy2832 261 FTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRT 340 (362)
Q Consensus 261 ~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~ 340 (362)
...+... ++++++ .+.+.+++++...++.+.. .|++.+ +++++| ++..+++|.++ |+.++.++
T Consensus 248 ~~~i~i~---~~~~~~--~~~~~E~~~l~~~v~~i~~-~g~~vv----l~~~~i------~d~a~~~l~~~-~I~~~~~v 310 (522)
T cd03340 248 NAEVRVE---DPEEYQ--AIVDAEWKIIYDKLEKIVK-SGANVV----LSKLPI------GDLATQYFADR-DIFCAGRV 310 (522)
T ss_pred ceEEEEC---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCCEE----EeCCCC------cHHHHHHHHHC-CcEEEEeC
Confidence 3333211 455555 7888888888888887764 566643 667776 45699999999 99999998
Q ss_pred CCCCC
Q psy2832 341 EELRE 345 (362)
Q Consensus 341 ~~~~~ 345 (362)
+..+.
T Consensus 311 ~~~~l 315 (522)
T cd03340 311 PEEDL 315 (522)
T ss_pred CHHHH
Confidence 76443
No 65
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.75 E-value=1e-10 Score=117.99 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=137.8
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeE-------eceeeccccCCccCcc
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVL-------RGVMLNKDVTHPKMRR 184 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv-------~Giv~~~~~~~~~m~~ 184 (362)
-+||..+.++|+.+.+.+.+.++.++.+.+-. | ...+.+++.++++ |++. .-++.++- .
T Consensus 103 gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~---~---~~~l~~va~ts~~-sK~~~~~~~~ls~li~~A~-------~ 168 (515)
T cd03338 103 GIHPTVISESFQIAAKKAVEILDSMSIPVDLN---D---RESLIKSATTSLN-SKVVSQYSSLLAPIAVDAV-------L 168 (515)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhccCCCCC---C---HHHHHHHHHHHhc-cccchhhHHHHHHHHHHHH-------H
Confidence 46888889999999999999998886544210 1 0123334444444 3332 22332220 1
Q ss_pred ccc--C--ceEEEeecccccccCCCccceeeecccccccccccchh-hccccCcceeeecccccccccccceeEEEcCHH
Q psy2832 185 RIE--N--PRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKM-RRRIENPRIVLLDCTLEYKKGESQTNVEIVNEA 259 (362)
Q Consensus 185 ~~~--~--~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~-~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~ 259 (362)
.+. + ..+++.++.+.+.+|+++++|++++|++|++.+.|+.| |+++++||+++++| ++++.+++
T Consensus 169 ~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~-----------~le~~~~~ 237 (515)
T cd03338 169 KVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQF-----------CLSPPKTD 237 (515)
T ss_pred HhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEec-----------cccccccc
Confidence 111 1 24666778889999999999999999999999999874 99999999999999 88887665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccC
Q psy2832 260 EFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNR 339 (362)
Q Consensus 260 ~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~ 339 (362)
....+... ++++++ .+.+.+++.+...++.+.. .|++.+ +++++|. -+.++...++++.+. |+.++.+
T Consensus 238 ~~~~~~i~---~~~~~~--~~~~~E~~~i~~~v~~i~~-~g~~lv----i~~~~i~-~~~v~~l~~~~l~~~-~I~av~~ 305 (515)
T cd03338 238 MDNNIVVN---DYAQMD--RILREERKYILNMCKKIKK-SGCNVL----LIQKSIL-RDAVSDLALHFLAKL-KIMVVKD 305 (515)
T ss_pred cCceEEeC---CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCCEE----EECCCcc-cccccHHHHHHHHHC-CceEEec
Confidence 44444221 455666 8888888888888887764 566643 7777774 234467789999997 9999998
Q ss_pred CCCCCCC
Q psy2832 340 TEELREE 346 (362)
Q Consensus 340 ~~~~~~~ 346 (362)
++..+.+
T Consensus 306 ~~~~~Le 312 (515)
T cd03338 306 IEREEIE 312 (515)
T ss_pred CCHHHHH
Confidence 8764443
No 66
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.75 E-value=7.6e-11 Score=119.03 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=134.4
Q ss_pred HHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEe-------ceeeccccCCccC
Q psy2832 110 KACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLR-------GVMLNKDVTHPKM 182 (362)
Q Consensus 110 ~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~-------Giv~~~~~~~~~m 182 (362)
+.-+||..+.++|+.+.+.+.+.+...+.+.+. .+......+.+++.++++ |++.. .++.++
T Consensus 110 ~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~---~~~~~~~~l~~va~tsl~-sK~~~~~~~~l~~l~~~A------- 178 (522)
T TIGR02345 110 EEGVHPQLIIRCYREALMLAIEKLKEIAVTIDE---VKGEQREVLEKCAATALN-SKLIAHEKEFFSKMIVDA------- 178 (522)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCC---cccccHHHHHHHHHHHhc-cccccchHHHHHHHHHHH-------
Confidence 344788899999999999999999887654431 111000123344444444 44332 222221
Q ss_pred cccccCceEEEeecccccccCCCccceeeecccccccccccchh---hccccCcceeeecccccccccccceeEEEcCHH
Q psy2832 183 RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKM---RRRIENPRIVLLDCTLEYKKGESQTNVEIVNEA 259 (362)
Q Consensus 183 ~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~---~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~ 259 (362)
...+.+..+++.++.+.+.+|+++.||++++|++|++.+.+|.| |++++||||+++++ +++..+.+
T Consensus 179 ~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~-----------~Le~~~~~ 247 (522)
T TIGR02345 179 VLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV-----------ELELKAEK 247 (522)
T ss_pred HHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec-----------CcccCccc
Confidence 01121123555567888889999999999999999999998865 99999999999999 77766544
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccC
Q psy2832 260 EFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNR 339 (362)
Q Consensus 260 ~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~ 339 (362)
....+.. + ++++++ .+.+.++.++..++..++. .|++. ++++++|. +..+++|.++ |+.++.+
T Consensus 248 ~~~~i~~-~--~~~~~~--~~~~~e~~~i~~~i~~i~~-~g~~v----v~~~~~i~------d~~~~~L~~~-~I~~~~~ 310 (522)
T TIGR02345 248 DNAEIRV-E--DVEDYQ--AIVDAEWAIIFRKLEKIVE-SGANV----VLSKLPIG------DLATQYFADH-NIFCAGR 310 (522)
T ss_pred cceEEEE-C--CHHHHH--HHHHHHHHHHHHHHHHHHh-cCCcE----EEeCCCcc------HHHHHHHHHC-CcEEEec
Confidence 3333321 2 566666 8888888888888887774 56654 36777764 4589999999 9999999
Q ss_pred CCCCC
Q psy2832 340 TEELR 344 (362)
Q Consensus 340 ~~~~~ 344 (362)
+...+
T Consensus 311 v~~~d 315 (522)
T TIGR02345 311 VSDED 315 (522)
T ss_pred CCHHH
Confidence 87654
No 67
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.67 E-value=8.3e-11 Score=118.57 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=132.7
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCccccee-------EeceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCV-------LRGVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~l-------v~Giv~~~~~~~~~m~ 183 (362)
.-+||..|.++|+.+.+.+.+.+..++.+.+.. .+.+ ...+.+++.++++ |++ +..++++.-
T Consensus 110 ~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~--~~~~-~~~L~~ia~t~l~-ski~~~~~~~~s~l~~~av------- 178 (519)
T TIGR02341 110 QKIHPQTIISGYRRATKAAQEALKKSSIDNGSD--KTKF-RDDLLNIARTTLS-SKILSQHKDHFAQLAVDAV------- 178 (519)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhcccccCc--cccc-HHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHH-------
Confidence 347888899999999999999998876544211 0000 0113344444444 332 222222211
Q ss_pred ccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHH-HH
Q psy2832 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAE-FT 262 (362)
Q Consensus 184 ~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~-~~ 262 (362)
..+++ ...+.++.+.+.+|+++.+|++++|+++++.+.| +||++++||+|+++++ +++..+++. ..
T Consensus 179 ~~i~~-~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~-----------~Le~~~~~~~~~ 245 (519)
T TIGR02341 179 LRLKG-SGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANT-----------PMDTDKVKVFGS 245 (519)
T ss_pred HHhcc-CCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEec-----------CCCCCccccCCc
Confidence 11111 1133457788889999999999999999999877 5799999999999999 888766553 22
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
++.. ++++++. .+...+++.....++.|+. .|++.+ +++++|. +..++++.++ |+.++++++.
T Consensus 246 ~~~~---~~~~~~~--~l~~~e~~~~~~~~~~I~~-~g~~~v----~~~~~I~------~~~~~~l~~~-~I~~v~~~~~ 308 (519)
T TIGR02341 246 RVRV---DSTAKVA--ELEAAEKEKMKEKVEKILK-HNINCF----INRQLIY------NYPEQLFADA-GVMAIEHADF 308 (519)
T ss_pred eEEe---CCHHHHH--HHHHHHHHHHHHHHHHHHH-cCCcEE----EECCcCC------HHHHHHHHHC-CcEEEecCCH
Confidence 2211 1344555 7888889988888988885 678754 6777775 4488899999 9999999876
Q ss_pred CCCCC
Q psy2832 343 LREED 347 (362)
Q Consensus 343 ~~~~~ 347 (362)
.+.+.
T Consensus 309 ~~l~~ 313 (519)
T TIGR02341 309 EGIER 313 (519)
T ss_pred HHHHH
Confidence 54443
No 68
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.59 E-value=3.3e-10 Score=114.51 Aligned_cols=193 Identities=13% Similarity=0.158 Sum_probs=132.4
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHhhhcc-ccCCccccccccceeEEEcCCCCcccceeEec------eeeccccCCcc
Q psy2832 109 IKACVGTKFIGKWSDLACNIALDAVQTVTV-EESGRKEIDIKRYAKVEKIPGGTIEDSCVLRG------VMLNKDVTHPK 181 (362)
Q Consensus 109 a~t~l~~k~i~~~~~~~~~l~~~ai~~i~~-~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~G------iv~~~~~~~~~ 181 (362)
.+.-+||..+.++|+.+.+.+.+.++.+.. .... ..+...+.+++.++++ |+++.+ +++++
T Consensus 110 i~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~-----~~~~~~l~~i~~tsl~-sK~~~~~~~ls~l~~~A------ 177 (531)
T TIGR02346 110 IRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVED-----VRNKKELIKALKASIS-SKQYGNEDFLAQLVAKA------ 177 (531)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCC-----CCCHHHHHHHHHHHhc-cccCchHHHHHHHHHHH------
Confidence 334478888999999999999999988764 2211 0011123344444544 444432 22221
Q ss_pred Cccccc-C--ceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCH
Q psy2832 182 MRRRIE-N--PRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNE 258 (362)
Q Consensus 182 m~~~~~-~--~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~ 258 (362)
...+. + ..+.+.++.+.+.+|+++++|++++|++|++.+. +||++++||||++++| ++++.++
T Consensus 178 -i~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~-----------~l~~~~~ 243 (531)
T TIGR02346 178 -CSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSC-----------PLDTATT 243 (531)
T ss_pred -HHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEec-----------CcCCCcc
Confidence 01111 1 1466677888899999999999999999999854 4799999999999999 8888776
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEcc
Q psy2832 259 AEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVN 338 (362)
Q Consensus 259 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~ 338 (362)
+....+. .++++++. .+.+.+++.+...++.+.. .|++. ++++++|.. ..++++++. |+.+++
T Consensus 244 ~~~~~~~---~~~~~~l~--~~~~~e~~~i~~~l~~i~~-~g~~l----vi~~~~I~d------~~~~~l~~~-~I~av~ 306 (531)
T TIGR02346 244 ETKGTVL---IHNAEELL--NYSKGEENQIEAYIKAIAD-SGVNV----IVTGGSVGD------MALHYCEKY-NIMVLK 306 (531)
T ss_pred cCceEEE---ECCHHHHH--HHHHHHHHHHHHHHHHHHH-cCCcE----EEECCCcCH------HHHHHHHHC-CcEEEe
Confidence 6433332 12566666 7777778888888887764 56653 367777754 589999988 999999
Q ss_pred CCCCCC
Q psy2832 339 RTEELR 344 (362)
Q Consensus 339 ~~~~~~ 344 (362)
+++.-+
T Consensus 307 ~~~~~~ 312 (531)
T TIGR02346 307 IPSKFE 312 (531)
T ss_pred cCCHHH
Confidence 887544
No 69
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.03 E-value=3.1e-07 Score=92.04 Aligned_cols=159 Identities=25% Similarity=0.296 Sum_probs=105.1
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcc------cceeEeceeeccccCCccCcc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIE------DSCVLRGVMLNKDVTHPKMRR 184 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~------dS~lv~Giv~~~~~~~~~m~~ 184 (362)
.-+||..|.++|+.+.+.+.+.++.++.+.+. .+...+.+++.++++ +.+.+..+++++-... .+.
T Consensus 110 ~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~------~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v--~~~ 181 (480)
T cd03337 110 RGIHPTVIIKAYRKALEDALKILEEISIPVDV------NDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTV--AVE 181 (480)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhcccccc------CCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhh--ccc
Confidence 34688889999999999999999887654321 111123333444444 1223334444331100 000
Q ss_pred cc-cCceEEEee-cccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 185 RI-ENPRIVLLD-CTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 185 ~~-~~~~i~l~~-~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
.- .+..+++.+ +.+++.+|++++||++++|++|++.+.|++||+++++|||++++|
T Consensus 182 ~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~---------------------- 239 (480)
T cd03337 182 ENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDC---------------------- 239 (480)
T ss_pred cCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEec----------------------
Confidence 00 001233333 567888999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
. +. . .++++++| ++..+++|.+. |+.++.+++.
T Consensus 240 ----------------~----------------Le-~-------lvi~~k~I------~d~al~~L~~~-~I~~v~~v~~ 272 (480)
T cd03337 240 ----------------P----------------LE-Y-------LVITEKGV------SDLAQHYLVKA-GITALRRVRK 272 (480)
T ss_pred ----------------C----------------cc-e-------EEEeCCCc------cHHHHHHHHHC-CcEEEEeCCH
Confidence 7 21 1 23556666 45699999998 9999998776
Q ss_pred CCCC
Q psy2832 343 LREE 346 (362)
Q Consensus 343 ~~~~ 346 (362)
.+.+
T Consensus 273 ~~L~ 276 (480)
T cd03337 273 TDNN 276 (480)
T ss_pred HHHH
Confidence 5443
No 70
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.02 E-value=2.5e-07 Score=92.74 Aligned_cols=166 Identities=16% Similarity=0.215 Sum_probs=113.2
Q ss_pred HhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcc------cceeEeceeeccccCCccCccc
Q psy2832 112 CVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIE------DSCVLRGVMLNKDVTHPKMRRR 185 (362)
Q Consensus 112 ~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~------dS~lv~Giv~~~~~~~~~m~~~ 185 (362)
-+||..+.++|+.+.+.+.+.++.++.+.+. +.|. ..+.+++.++++ ++..+..++.++- ..
T Consensus 107 gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~--~~~~---~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~-------~~ 174 (484)
T cd03342 107 GVHPRIITEGFELAKNKALKFLESFKVPVEI--DTDR---ELLLSVARTSLRTKLHADLADQLTEIVVDAV-------LA 174 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCH---HHHHHHHHHHhCcccchhHHHHHHHHHHHHH-------HH
Confidence 3688889999999999999999887654321 0011 123333343333 1234444444431 11
Q ss_pred c-cC-ceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHH
Q psy2832 186 I-EN-PRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTK 263 (362)
Q Consensus 186 ~-~~-~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~ 263 (362)
+ .+ ..+.+.++.+.+.+|+++++|++++|++|++.+.||.||++++||||++++| +++..++
T Consensus 175 v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~-----------~le~~~~----- 238 (484)
T cd03342 175 IYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNV-----------SLEYEKT----- 238 (484)
T ss_pred HhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeC-----------CCCCCcc-----
Confidence 1 11 2567778889999999999999999999999999999999999999999999 5543220
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCC
Q psy2832 264 ILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEEL 343 (362)
Q Consensus 264 ~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~ 343 (362)
. ....+.+. .++++++|. +..+++|.+. |+.++++++..
T Consensus 239 ---------------~----------~~~~~~~~---------lvi~~~~I~------~~al~~l~~~-~I~av~~~~~~ 277 (484)
T cd03342 239 ---------------E----------VNSGFFYS---------VVINQKGID------PPSLDMLAKE-GILALRRAKRR 277 (484)
T ss_pred ---------------c----------cCcEEEEE---------EEEeCCCcc------HHHHHHHHHC-CCeEEEeCCHH
Confidence 0 12344331 245677764 5699999999 99999987765
Q ss_pred CCC
Q psy2832 344 REE 346 (362)
Q Consensus 344 ~~~ 346 (362)
+.+
T Consensus 278 ~l~ 280 (484)
T cd03342 278 NME 280 (484)
T ss_pred HHH
Confidence 444
No 71
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=97.94 E-value=5.2e-09 Score=105.00 Aligned_cols=191 Identities=18% Similarity=0.263 Sum_probs=123.6
Q ss_pred HHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcc------cceeEeceeeccccCCccC
Q psy2832 109 IKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIE------DSCVLRGVMLNKDVTHPKM 182 (362)
Q Consensus 109 a~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~------dS~lv~Giv~~~~~~~~~m 182 (362)
++.-+||..+.++++.+.+.+.+.+..++....... ..+.+++.+++. ++..+.-++.+.-
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-------~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~------ 147 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-------ESLLNIAKTSLNSKISSSWSDHLSKLIVDAI------ 147 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-------HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH------
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-------hhhhhhhcccccccccccchhhhhhhHHHHH------
Confidence 334567888889999999999999988865443210 012222333322 1223333333321
Q ss_pred cccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHH
Q psy2832 183 RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFT 262 (362)
Q Consensus 183 ~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~ 262 (362)
..+. ....+.++.+.+.+|++++||++++|+++++.+.+++||+++++|||+++++ +++..+. ...
T Consensus 148 -~~~~-~~~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~-----------~L~~~~~-~~~ 213 (485)
T PF00118_consen 148 -KSIK-SNFDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNC-----------PLEYSKS-FKS 213 (485)
T ss_dssp -HHHT-TTHHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESS-----------EBSSCCH-STE
T ss_pred -Hhhc-ccccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeec-----------ccccccc-ccc
Confidence 0000 0022223566777899999999999999999999999999999999999999 7777665 222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCC
Q psy2832 263 KILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342 (362)
Q Consensus 263 ~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~ 342 (362)
++... +++++. .+.+.+++.+...++.+. ..|++.+ +++ +.+++..++++.+. |+.++.+++.
T Consensus 214 ~~~~~---~~~~~~--~~~~~e~~~l~~~~~~i~-~~~~~lI----i~~------~~i~~~~l~~l~~~-~I~~i~~v~~ 276 (485)
T PF00118_consen 214 EIRIT---SPEQLD--ELSKQEKKYLKKILEKII-NLGVNLI----ISQ------KSIDDEALQYLNKN-GILVIRRVSK 276 (485)
T ss_dssp EEEES---STHHHH--HHHHHHHHHHHHHHHHHH-TTTSSEE----EES------SEBTHHHHHHHHHC-THEEESSEHH
T ss_pred ccchh---hHHHHH--HHHhhhhhhhccccceEe-eecccee----eee------cccccccchhhhhh-hhhccccchH
Confidence 22211 455555 778888887776666665 3455532 333 45577799999988 9999988764
Q ss_pred C
Q psy2832 343 L 343 (362)
Q Consensus 343 ~ 343 (362)
.
T Consensus 277 ~ 277 (485)
T PF00118_consen 277 E 277 (485)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=97.74 E-value=4.3e-06 Score=83.54 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=80.5
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCccccee-------EeceeeccccCCccCc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCV-------LRGVMLNKDVTHPKMR 183 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~l-------v~Giv~~~~~~~~~m~ 183 (362)
.-+||..+.++++.+.+.+.+.+..++.+.+.. + ...+.+++.++++ |++ +..++.++-
T Consensus 102 ~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~---~---~~~l~~ia~tsl~-sK~~~~~~~~l~~l~~~Ai------- 167 (464)
T cd00309 102 AGIHPTEIIRGYEKAVEKALEILKEIAVPIDVE---D---REELLKVATTSLN-SKLVSGGDDFLGELVVDAV------- 167 (464)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCC---C---HHHHHHHhHhccc-ccccccchHHHHHHHHHHH-------
Confidence 346888889999999999999998876542111 1 1123344455554 333 333333321
Q ss_pred cccc--CceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 184 RRIE--NPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 184 ~~~~--~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
..+. +..+...++.+++.+|+++.||++++|++|++.+.||.||+.+++|||++++|
T Consensus 168 ~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~ 226 (464)
T cd00309 168 LKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDC 226 (464)
T ss_pred HHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEec
Confidence 0110 01344556788999999999999999999999999999999999999999876
No 73
>KOG0359|consensus
Probab=97.61 E-value=4e-07 Score=86.01 Aligned_cols=211 Identities=16% Similarity=0.200 Sum_probs=141.0
Q ss_pred HHHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEe-------ce
Q psy2832 103 SKLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLR-------GV 171 (362)
Q Consensus 103 ~~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~-------Gi 171 (362)
-++++.|.-. +||.+|..+++.+-+-+.+.++.+....+. -.+..++.+++. +++-. -+
T Consensus 99 gEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~---------~~L~~va~tsl~-Tkv~~~la~~lt~~ 168 (520)
T KOG0359|consen 99 GELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDR---------ETLKDVARTSLR-TKVHAELADVLTPI 168 (520)
T ss_pred HHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhH---------HHHHHHHHHhhc-CcccHHHHhHhHHH
Confidence 3566655544 699999999999999999998865443321 112223333333 22222 22
Q ss_pred eeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccce
Q psy2832 172 MLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQT 251 (362)
Q Consensus 172 v~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~ 251 (362)
+.+.-. + .+ -....++++-..+....-++..|+.+++|.++|...-||.||+++||+=|+..|.
T Consensus 169 vv~aVl-~---i~-~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~Nv----------- 232 (520)
T KOG0359|consen 169 VVDSVL-C---IR-RQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNV----------- 232 (520)
T ss_pred HHhhhe-e---ec-cCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeec-----------
Confidence 222100 0 01 1123467777777778888999999999999999999999999999999999988
Q ss_pred eEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCC-CCCHHHHHHHHhCCCeEEeeCChhhHHHHHH
Q psy2832 252 NVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK-GISDLAQHFLLKANITAIRRVRKSDNNRIAR 330 (362)
Q Consensus 252 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~-gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~ 330 (362)
++++.+++-...|- .+..++.+ .+-..+++....++..|+--+ .|-+ ..+++|+||+-. .++-+|+
T Consensus 233 SLEYEK~Einsgff---Ysta~ere--~L~~~eR~Fi~~r~~kiielk~~vc~--fvvinqkGidp~------sld~~a~ 299 (520)
T KOG0359|consen 233 SLEYEKPEINSGFF---YSTAEERE--VLVLAERKFIDQRVRKIIELKRKVCE--FVVINQKGIDPT------SLDSLAK 299 (520)
T ss_pred cccccccccccchh---ccchhHHH--HHHHHHHHHHHHHHHHHHHHhhhcce--EEEecccCCCCC------cchhhhh
Confidence 99998877555542 11334444 888888888888877776311 1111 235678888654 8899999
Q ss_pred HhCCeEccCCCCCCCCCCCCCcc
Q psy2832 331 ACGATIVNRTEELREEDVGTGAG 353 (362)
Q Consensus 331 ~tG~~iv~~~~~~~~~~lG~~~~ 353 (362)
. |+.+++|-.+=+.+.+--+|+
T Consensus 300 ~-gIlaLRRAKRRNmERL~lacG 321 (520)
T KOG0359|consen 300 S-GILALRRAKRRNMERLVLACG 321 (520)
T ss_pred c-chHHHHHHhhhhHHHHHHhhc
Confidence 9 999999988776665443333
No 74
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=97.48 E-value=4.3e-05 Score=68.01 Aligned_cols=48 Identities=33% Similarity=0.500 Sum_probs=44.5
Q ss_pred EeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832 193 LLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240 (362)
Q Consensus 193 l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~ 240 (362)
...+.+++.+|++++||++++|++|++.+.|+.||+++++|||+++++
T Consensus 43 ~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~ 90 (209)
T cd03333 43 LGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDC 90 (209)
T ss_pred hHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeC
Confidence 345678899999999999999999999999999999999999999987
No 75
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=96.79 E-value=0.00027 Score=71.80 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=64.9
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
+|++.+... +||..|.++|+.+.+.+.+.+..++.+.+..+ .+..++.++......+..++.++-
T Consensus 97 ~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~--------~l~~va~ts~~~~~~ls~lv~~Av--- 165 (542)
T PRK00013 97 AIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKE--------EIAQVATISANGDEEIGKLIAEAM--- 165 (542)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHH--------HHHHHHHhcccchHHHHHHHHHHH---
Confidence 444444444 68888999999999999999988866543111 123333444433445555555431
Q ss_pred ccCccccc-CceEEEeecccccccCCCccceeeecccccccccccchhh
Q psy2832 180 PKMRRRIE-NPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMR 227 (362)
Q Consensus 180 ~~m~~~~~-~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~ 227 (362)
..+. +.. +.+++.+| +..++++++|++|++.+.||.+.
T Consensus 166 ----~~v~~~g~-----i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~ 204 (542)
T PRK00013 166 ----EKVGKEGV-----ITVEESKG-FETELEVVEGMQFDRGYLSPYFV 204 (542)
T ss_pred ----HHhCcCCc-----EEEEEcCC-CCceEEEEEeEEecCCccccccc
Confidence 1111 111 34555555 78899999999999999998763
No 76
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=96.70 E-value=0.00023 Score=71.33 Aligned_cols=156 Identities=12% Similarity=0.150 Sum_probs=100.4
Q ss_pred HHhhcccccchHHHHHHHHHHHHhhhccc-cCCccccccccceeEEEcCCCCcc-----cceeEeceeeccccCCccCcc
Q psy2832 111 ACVGTKFIGKWSDLACNIALDAVQTVTVE-ESGRKEIDIKRYAKVEKIPGGTIE-----DSCVLRGVMLNKDVTHPKMRR 184 (362)
Q Consensus 111 t~l~~k~i~~~~~~~~~l~~~ai~~i~~~-~~~~~~~d~~~~i~i~ki~g~s~~-----dS~lv~Giv~~~~~~~~~m~~ 184 (362)
.-+||..+.++|+.+.+.+.+.+..+... ..... |. ..+.+++.+++. +...+.-++.+.- .
T Consensus 102 ~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~--~~---~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~-------~ 169 (472)
T cd03341 102 MGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR--NK---EEVSKALKTAIASKQYGNEDFLSPLVAEAC-------I 169 (472)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc--CH---HHHHHHHHHHhcccccchHHHHHHHHHHHH-------H
Confidence 34688888899999999999999887533 21100 11 112223233332 1222222222210 1
Q ss_pred cc---cCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHH
Q psy2832 185 RI---ENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEF 261 (362)
Q Consensus 185 ~~---~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~ 261 (362)
.+ .+..+.+.++.+.+.+|+++.||++++|++|++.+. .++++++||||+++++
T Consensus 170 ~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~--------------------- 226 (472)
T cd03341 170 SVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSC--------------------- 226 (472)
T ss_pred HHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEec---------------------
Confidence 11 114566777888999999999999999999988764 3468899999999877
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCC
Q psy2832 262 TKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTE 341 (362)
Q Consensus 262 ~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~ 341 (362)
. + ..|++. ++++++| ++..++++++. |+.++++++
T Consensus 227 -----------------~----------------L-e~g~~l----vi~~~~I------~d~al~~l~~~-~I~av~~~~ 261 (472)
T cd03341 227 -----------------P----------------F-DIGVNV----IVAGGSV------GDLALHYCNKY-GIMVIKINS 261 (472)
T ss_pred -----------------c----------------c-cCCCeE----EEECCCC------CHHHHHHHHHC-CeEEEEeCC
Confidence 7 3 225443 2555555 45688888887 999998887
Q ss_pred CCCCC
Q psy2832 342 ELREE 346 (362)
Q Consensus 342 ~~~~~ 346 (362)
..+.+
T Consensus 262 ~~~Le 266 (472)
T cd03341 262 KFELR 266 (472)
T ss_pred HHHHH
Confidence 54433
No 77
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=96.45 E-value=0.00081 Score=68.40 Aligned_cols=102 Identities=10% Similarity=0.173 Sum_probs=63.5
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
+|++-+... +||..|.++|+.+.+.+.+.+..++.+.+..+ .+..++.++....+.+..++.++-
T Consensus 97 eLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~--------~l~~va~ts~~~~~~l~~lv~~Av--- 165 (542)
T PRK12849 97 ALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSE--------EIAQVATISANGDEEIGELIAEAM--- 165 (542)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHH--------HHHHHHHHhcCChHHHHHHHHHHH---
Confidence 445444444 58889999999999999999988866543111 122233333333445555555431
Q ss_pred ccCcccc-cCceEEEeecccccccCCCccc-eeeecccccccccccchhh
Q psy2832 180 PKMRRRI-ENPRIVLLDCTLEYKKGESQTN-VEIVNESDWRRSVTHPKMR 227 (362)
Q Consensus 180 ~~m~~~~-~~~~i~l~~~~l~~~~g~s~~~-s~l~~G~~~~~~~~~~~~~ 227 (362)
..+ .+..+. ++ .|+++.| +++++|+.|++.+.||.+.
T Consensus 166 ----~~v~~~g~i~-----i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~ 204 (542)
T PRK12849 166 ----EKVGKDGVIT-----VE--ESKTLETELEVTEGMQFDRGYLSPYFV 204 (542)
T ss_pred ----HHhccCCcEe-----EE--eCCCcceeEEEEEeEEEecCcccCccc
Confidence 111 112222 22 6888876 8999999999999998763
No 78
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=96.36 E-value=0.0009 Score=67.77 Aligned_cols=102 Identities=8% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
+|++-+... +||..+.++|+.+.+.+.+.+..++.+.+.. ..+.+++.+++..+..+..++.++-
T Consensus 95 ~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~--------~~l~~va~ts~~~~~~l~~lv~~A~--- 163 (520)
T cd03344 95 AIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTK--------EEIAQVATISANGDEEIGELIAEAM--- 163 (520)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCH--------HHHHHHHHHhcCChHHHHHHHHHHH---
Confidence 344444444 5788899999999999999998886544311 1123344445443444445554431
Q ss_pred ccCcccc-cCceEEEeecccccccCCCccc-eeeecccccccccccchhh
Q psy2832 180 PKMRRRI-ENPRIVLLDCTLEYKKGESQTN-VEIVNESDWRRSVTHPKMR 227 (362)
Q Consensus 180 ~~m~~~~-~~~~i~l~~~~l~~~~g~s~~~-s~l~~G~~~~~~~~~~~~~ 227 (362)
..+ .+..| ...+|+++.| +.+++|+.|++.+.||.|.
T Consensus 164 ----~~v~~~~~i-------~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~ 202 (520)
T cd03344 164 ----EKVGKDGVI-------TVEEGKTLETELEVVEGMQFDRGYLSPYFV 202 (520)
T ss_pred ----HHhccCCcE-------EEEeCCCcceeEEEEeeEEecCCCCCCccc
Confidence 111 11222 2257899988 7999999999999999873
No 79
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=96.28 E-value=0.00082 Score=68.14 Aligned_cols=102 Identities=12% Similarity=0.209 Sum_probs=61.9
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
.|++-+... +||..|.++|+.+.+.+.+.+..++.+.+..+ .+..++.++......+..++.++-
T Consensus 96 ~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~--------~l~~va~ts~~~~~~l~~lv~~A~--- 164 (524)
T TIGR02348 96 AIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKK--------EIAQVATISANNDEEIGSLIAEAM--- 164 (524)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHH--------HHHHHHHHhccChHHHHHHHHHHH---
Confidence 444444444 68888999999999999999988866543111 122233333333344455554431
Q ss_pred ccCccccc-CceEEEeecccccccCCCc-cceeeecccccccccccchhh
Q psy2832 180 PKMRRRIE-NPRIVLLDCTLEYKKGESQ-TNVEIVNESDWRRSVTHPKMR 227 (362)
Q Consensus 180 ~~m~~~~~-~~~i~l~~~~l~~~~g~s~-~~s~l~~G~~~~~~~~~~~~~ 227 (362)
..+. +..|. ++ .|+.. .++++++|+.|++.+.||.|.
T Consensus 165 ----~~v~~~~~i~-----v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~ 203 (524)
T TIGR02348 165 ----EKVGKDGVIT-----VE--ESKSLETELEVVEGMQFDRGYISPYFV 203 (524)
T ss_pred ----HHhCcCCcEe-----ee--cCCCccccEEEEEeEEEcCCCCCcccc
Confidence 1111 12222 22 25556 779999999999999998763
No 80
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=96.17 E-value=0.00078 Score=69.16 Aligned_cols=92 Identities=9% Similarity=0.168 Sum_probs=58.7
Q ss_pred hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCccccc-CceE
Q psy2832 113 VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIE-NPRI 191 (362)
Q Consensus 113 l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~-~~~i 191 (362)
+||..|.++|+.+.+.+.+.++.++.+.+. . .+.+++.++..+...+..++.++ ...+. +..
T Consensus 166 i~P~~I~~G~~~A~~~~~~~L~~~s~~v~d------~---~L~~vA~tS~~~~~~i~~liaeA-------v~~Vg~~g~- 228 (600)
T PLN03167 166 ANPVQITRGIEKTAKALVKELKKMSKEVED------S---ELADVAAVSAGNNYEVGNMIAEA-------MSKVGRKGV- 228 (600)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccCCH------H---HHHHHHHHhccCcHHHHHHHHHH-------HHHhccCCc-
Confidence 688889999999999999999887654321 0 12333333433233344444433 01121 111
Q ss_pred EEeecccccccCCCccce-eeecccccccccccchhh
Q psy2832 192 VLLDCTLEYKKGESQTNV-EIVNESDWRRSVTHPKMR 227 (362)
Q Consensus 192 ~l~~~~l~~~~g~s~~~s-~l~~G~~~~~~~~~~~~~ 227 (362)
+....|+++.++ ++++|+.|++.+.||.+-
T Consensus 229 ------i~v~~g~s~~dsl~~v~G~~~d~g~~spyfv 259 (600)
T PLN03167 229 ------VTLEEGKSAENNLYVVEGMQFDRGYISPYFV 259 (600)
T ss_pred ------EEeccCCCccceeEEEEEEEecCCccCcccc
Confidence 222368899997 899999999999999873
No 81
>PTZ00114 Heat shock protein 60; Provisional
Probab=96.16 E-value=0.00082 Score=68.62 Aligned_cols=94 Identities=12% Similarity=0.253 Sum_probs=60.2
Q ss_pred hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCcccccCceEE
Q psy2832 113 VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIV 192 (362)
Q Consensus 113 l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~ 192 (362)
+||..|.++|+.+.+.+.+.+..++.+.+..+ .+.+++.++......+..++.++ + ..+.+
T Consensus 122 ihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~--------~l~~va~ts~~~~~~l~~li~eA-v------~~vg~---- 182 (555)
T PTZ00114 122 LNPMDLKRGIDLAVKVVLESLKEQSRPVKTKE--------DILNVATISANGDVEIGSLIADA-M------DKVGK---- 182 (555)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCCHH--------HHHHHHHHHcCChHHHHHHHHHH-H------HHhCc----
Confidence 57888999999999999999988865543111 12233333332222333333332 0 11111
Q ss_pred EeecccccccCCCccce-eeecccccccccccchhh
Q psy2832 193 LLDCTLEYKKGESQTNV-EIVNESDWRRSVTHPKMR 227 (362)
Q Consensus 193 l~~~~l~~~~g~s~~~s-~l~~G~~~~~~~~~~~~~ 227 (362)
+..+...+|+++.+| ++++|+.|++.+.||.|.
T Consensus 183 --~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~ 216 (555)
T PTZ00114 183 --DGTITVEDGKTLEDELEVVEGMSFDRGYISPYFV 216 (555)
T ss_pred --CCcEEEcCCCCccceEEEEEEEEEeccccccccc
Confidence 113667789999998 799999999999998873
No 82
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=95.80 E-value=0.0019 Score=65.80 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=56.7
Q ss_pred hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCcccc-cCceE
Q psy2832 113 VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRI-ENPRI 191 (362)
Q Consensus 113 l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~-~~~~i 191 (362)
+||..|.++|+.+.+.+.+.+..++.+.+..+ + +.+++.++......+..++.++- ..+ .+..+
T Consensus 111 ihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~--~------l~~va~~s~~~~~~l~~lv~~Av-------~~vg~~g~i 175 (541)
T PRK12851 111 ANPMDLKRGIDRAVAAVVEELKANARPVTTNA--E------IAQVATISANGDAEIGRLVAEAM-------EKVGNEGVI 175 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhccCCCCHH--H------HHHHHHHhccChHHHHHHHHHHH-------HHhcccCce
Confidence 68888999999999999999988865443111 1 12222222233444555555431 111 11222
Q ss_pred EEeecccccccCCCccceeeecccccccccccchh
Q psy2832 192 VLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKM 226 (362)
Q Consensus 192 ~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~ 226 (362)
.++..+ ++..++++++|+.|++.+.||.+
T Consensus 176 -----~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~ 204 (541)
T PRK12851 176 -----TVEESK-TAETELEVVEGMQFDRGYLSPYF 204 (541)
T ss_pred -----EEEEcc-CCCcceEEEEEEEecCCcccccc
Confidence 233333 56678999999999999999865
No 83
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=95.46 E-value=0.0042 Score=63.31 Aligned_cols=104 Identities=11% Similarity=0.197 Sum_probs=61.2
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
+|++-+... +||..|.++|+.+.+.+.+.+..++.+.+..+ .+.+++.++......+..++.++-
T Consensus 98 ~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~--------~l~~va~~s~~~~~~l~~lv~eAv--- 166 (544)
T PRK12850 98 AIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSK--------EIAQVATISANGDESIGEMIAEAM--- 166 (544)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHH---
Confidence 344444444 57888999999999999999988865443111 122222223322344444444431
Q ss_pred ccCcccc-cCceEEEeecccccccCCCccceeeecccccccccccchhhc
Q psy2832 180 PKMRRRI-ENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRR 228 (362)
Q Consensus 180 ~~m~~~~-~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~ 228 (362)
..+ .+..+.+.... .+| .++++++|+.|++.+.||.|..
T Consensus 167 ----~~vg~~g~i~v~~~~---~~g---~~~~~v~G~~~~~g~~~p~~~~ 206 (544)
T PRK12850 167 ----DKVGKEGVITVEEAK---TLG---TELDVVEGMQFDRGYLSPYFVT 206 (544)
T ss_pred ----HHhcccCceeeEEcc---ccC---cceEEEEeEEecCccCcCcccc
Confidence 111 12234443322 334 6889999999999999998743
No 84
>CHL00093 groEL chaperonin GroEL
Probab=95.35 E-value=0.0036 Score=63.64 Aligned_cols=93 Identities=9% Similarity=0.128 Sum_probs=58.8
Q ss_pred hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCCccCccccc-CceE
Q psy2832 113 VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIE-NPRI 191 (362)
Q Consensus 113 l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~~~m~~~~~-~~~i 191 (362)
+||..|.++|+.+.+.+.+.++.++.+.+.. ..+.+++.++.+.+..+..++.++- ..+. +..|
T Consensus 110 i~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~--------~~L~~VA~ts~~~~~~l~~lv~eAv-------~~vg~~g~i 174 (529)
T CHL00093 110 ANPISLKRGIEKATQYVVSQIAEYARPVEDI--------QAITQVASISAGNDEEVGSMIADAI-------EKVGREGVI 174 (529)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHhccChHHHHHHHHHHH-------HHhccCCce
Confidence 5888899999999999999999886554311 1133344444444555555555531 1111 2223
Q ss_pred EEeecccccccCCCccceeeecccccccccccchh
Q psy2832 192 VLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKM 226 (362)
Q Consensus 192 ~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~ 226 (362)
.+ + ..+++.+++++++|+.|++.+.||.+
T Consensus 175 ~~-----~-~g~~~~~~~~~v~G~~~~~g~~~p~f 203 (529)
T CHL00093 175 SL-----E-EGKSTVTELEITEGMRFEKGFISPYF 203 (529)
T ss_pred ee-----c-CCCccceeeEEEeeEEecCccCcCcc
Confidence 22 1 12345678899999999999999875
No 85
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=94.89 E-value=0.0089 Score=60.98 Aligned_cols=101 Identities=10% Similarity=0.177 Sum_probs=59.1
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
+|++-+... +||..|.++|+.+.+.+.+.+..++.+.+..+ + +.+++..+......+..++.++-
T Consensus 98 eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~--~------l~~va~~s~~~~~~l~~li~eA~--- 166 (545)
T PRK12852 98 AIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSA--E------IAQVGTISANGDAAIGKMIAQAM--- 166 (545)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHH--H------HHHHHhhhcCChHHHHHHHHHHH---
Confidence 444444444 48888999999999999999988765543211 1 12222222221233333333320
Q ss_pred ccCcccc-cCceEEEeecccccccCCCc-cceeeecccccccccccchh
Q psy2832 180 PKMRRRI-ENPRIVLLDCTLEYKKGESQ-TNVEIVNESDWRRSVTHPKM 226 (362)
Q Consensus 180 ~~m~~~~-~~~~i~l~~~~l~~~~g~s~-~~s~l~~G~~~~~~~~~~~~ 226 (362)
..+ .+..|.+. .|+++ .++.+++|+.|++.+.+|.+
T Consensus 167 ----~~vg~~g~i~v~-------~g~~~~~~~~~v~G~~~~~g~~~p~~ 204 (545)
T PRK12852 167 ----QKVGNEGVITVE-------ENKSLETEVDIVEGMKFDRGYLSPYF 204 (545)
T ss_pred ----HHhccCCceeee-------cCCCcceEEEEEEeEEecCCccCCcc
Confidence 111 11222222 26665 79999999999999998765
No 86
>KOG0362|consensus
Probab=94.70 E-value=0.001 Score=64.50 Aligned_cols=202 Identities=12% Similarity=0.100 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHh----hcccccchHHHHHHHHHHHHhhhccccCCcccccccc---ceeEEEcCCCCcccceeEeceeec
Q psy2832 102 RSKLIEVIKACV----GTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKR---YAKVEKIPGGTIEDSCVLRGVMLN 174 (362)
Q Consensus 102 ~~~ll~ia~t~l----~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~---~i~i~ki~g~s~~dS~lv~Giv~~ 174 (362)
-.+|++.|...+ +|--++++|+.+...+.+.+..+...... +..|.+. .+...+-.|..--.++++ .+
T Consensus 107 a~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~-d~~d~~~~~rs~i~skq~~~ed~l~~lV----a~ 181 (537)
T KOG0362|consen 107 AGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG-DLEDKEWALRSVIMSKQYGNEDFLTKLV----AK 181 (537)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc-cccChHHHHHHHHHHhhcchHHHHHHHH----HH
Confidence 357787777764 55567889999999999988876443211 0111110 000011111100001111 11
Q ss_pred cccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEE
Q psy2832 175 KDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVE 254 (362)
Q Consensus 175 ~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~ 254 (362)
.-.. -.| .+.+.+.|+.+.+..|+++++|+++.|++|++... +.++..+.+||+++.| ++.
T Consensus 182 ac~s--i~p----~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~c-----------P~d 242 (537)
T KOG0362|consen 182 ACVS--ILP----LMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFAC-----------PFD 242 (537)
T ss_pred HHHh--hcc----cccccccceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEec-----------CCC
Confidence 1000 000 12267778899999999999999999999998765 2347888999999999 888
Q ss_pred EcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCC
Q psy2832 255 IVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGA 334 (362)
Q Consensus 255 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~ 334 (362)
+..++...++... +++++- .|.+-++++++..+.-|.. .|+..+ .+-..+.+..++++-++ ++
T Consensus 243 ~~~TEtkgTvLi~---~A~el~--~FSKgEe~lle~~vk~Ia~-~gvkVi----------V~~g~V~em~Lhflnky-~I 305 (537)
T KOG0362|consen 243 IAQTETKGTVLLK---NAKELL--NFSKGEEALLEEQVKAIAD-AGVKVI----------VSGGKVDEMTLHFLNKY-KI 305 (537)
T ss_pred cccccCcceeeec---CcHhhh--hhccccHHHHHHHHHHHHh-cCCeEE----------EecCccchhhhhhhccc-cE
Confidence 7777766666543 677777 8888899988887777764 455532 22345566799999999 99
Q ss_pred eEccCCCCCC
Q psy2832 335 TIVNRTEELR 344 (362)
Q Consensus 335 ~iv~~~~~~~ 344 (362)
++++--.+.+
T Consensus 306 mVlqi~Sk~e 315 (537)
T KOG0362|consen 306 MVLQINSKFD 315 (537)
T ss_pred EEEEeccHhh
Confidence 9987555544
No 87
>PRK14104 chaperonin GroEL; Provisional
Probab=91.20 E-value=0.084 Score=53.91 Aligned_cols=101 Identities=9% Similarity=0.194 Sum_probs=58.4
Q ss_pred HHHHHHHHH----hhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCCCcccceeEeceeeccccCC
Q psy2832 104 KLIEVIKAC----VGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179 (362)
Q Consensus 104 ~ll~ia~t~----l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~s~~dS~lv~Giv~~~~~~~ 179 (362)
.|++-+... +||..+.++|+.+.+.+.+.+..++.+.+..+ + +..++..+......+..++.++ +
T Consensus 98 ~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~--~------l~~va~~s~~~d~~i~~lv~~A-v-- 166 (546)
T PRK14104 98 AIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSND--E------IAQVGTISANGDAEIGKFLADA-M-- 166 (546)
T ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHH--H------HHHHHHHHhcCchHHHHHHHHH-H--
Confidence 344444444 48888999999999999999988865543211 1 1222222222112233344432 0
Q ss_pred ccCcccc-cCceEEEeecccccccCCCc-cceeeecccccccccccchh
Q psy2832 180 PKMRRRI-ENPRIVLLDCTLEYKKGESQ-TNVEIVNESDWRRSVTHPKM 226 (362)
Q Consensus 180 ~~m~~~~-~~~~i~l~~~~l~~~~g~s~-~~s~l~~G~~~~~~~~~~~~ 226 (362)
..+ .+..|.+.++ +++ +++.+++|+.|++.+.||.+
T Consensus 167 ----~~vg~~g~i~v~~~-------~~~~~~~~~~~G~~~~~g~~~p~~ 204 (546)
T PRK14104 167 ----KKVGNEGVITVEEA-------KSLETELDVVEGMQFDRGYISPYF 204 (546)
T ss_pred ----HHhccCCceeeEec-------ccccceEEEEEEEEEeCCCCCcch
Confidence 111 1223333332 344 58999999999999999754
No 88
>KOG0230|consensus
Probab=85.15 E-value=0.28 Score=54.15 Aligned_cols=112 Identities=18% Similarity=0.233 Sum_probs=77.3
Q ss_pred ccccccCCCccceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcC-HHHHHHHHHHHHHHhhhh
Q psy2832 197 TLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVN-EAEFTKILQLEEEYVEKL 275 (362)
Q Consensus 197 ~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~-~~~~~~~~~~e~~~~~~~ 275 (362)
.+...+||+-.||+++.|+++.|.+.|..|.+++++|||+++.+ .+++.. ..++..+.
T Consensus 365 kvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g-----------~leyqrisn~lsS~e---------- 423 (1598)
T KOG0230|consen 365 KVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGG-----------PLEYQRISNQLSSIE---------- 423 (1598)
T ss_pred EEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEec-----------chhhhhhhccccchH----------
Confidence 34555678899999999999999999999999999999999988 555543 23344442
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCC
Q psy2832 276 EEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELR 344 (362)
Q Consensus 276 ~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~ 344 (362)
-+..++....+.-+..|.+. .-..+.+=..|+....++|-.. |+..+-+++..-
T Consensus 424 ---tvlqqE~e~lk~~varI~s~-----------~p~vllVeksVS~~aqe~L~~k-~I~lvlnvK~s~ 477 (1598)
T KOG0230|consen 424 ---TVLQQEKEYLKKVVARIESL-----------RPDVLLVEKSVSRIAQELLLDK-GISLVLNVKRSL 477 (1598)
T ss_pred ---HHHhhHHHHHHHHHHHHHhc-----------CCCeEEEechHHHHHHHHhhcc-CeEEEEeccHHH
Confidence 33444666666666666542 2223333345566688888555 888887766543
No 89
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=74.71 E-value=16 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=34.0
Q ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHH
Q psy2832 285 NDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIA 329 (362)
Q Consensus 285 ~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la 329 (362)
+.+...+|+++++ +++.+-+...|.++||.++.......-+-|.
T Consensus 47 ~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~ 90 (94)
T PF02579_consen 47 KFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEALE 90 (94)
T ss_dssp HHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHHH
T ss_pred HHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHH
Confidence 4455589999998 6899999999999999999875444444333
No 90
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=70.49 E-value=25 Score=28.33 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHH
Q psy2832 283 VCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARA 331 (362)
Q Consensus 283 ~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~ 331 (362)
..+.+.+.++|+|++ +++.+-+..+|.++||-+..-.....-+-|-..
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~ 104 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAF 104 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHH
Confidence 456788899999998 579999999999999999877775555555444
No 91
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=61.61 E-value=32 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCC
Q psy2832 285 NDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVR 321 (362)
Q Consensus 285 ~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~ 321 (362)
+.+...++++|++ +++.+-+...|.++||.++....
T Consensus 57 ~~l~~~~v~~vi~-~~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 57 EFLADEGVDVVIV-GGIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHcCCCEEEe-CCCCcCHHHHHHHCCCEEEEcCC
Confidence 4455589999998 57999999999999999986665
No 92
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=58.59 E-value=38 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=30.8
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCC
Q psy2832 284 CNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVR 321 (362)
Q Consensus 284 ~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~ 321 (362)
.+.+...+|++|++ +++.+-+...|.++||.++....
T Consensus 54 ~~~l~~~~v~~vi~-~~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 54 ARLLALEGCDAVLV-GGIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHCCCcEEEE-cccCccHHHHHHHcCCEEEEcCC
Confidence 34456689999998 57999999999999999986665
No 93
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=41.73 E-value=88 Score=24.02 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=27.0
Q ss_pred CCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCC
Q psy2832 290 LKPDLIFTEKGISDLAQHFLLKANITAIRRVR 321 (362)
Q Consensus 290 ~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~ 321 (362)
.+|++|++ +++.+-+...|.++||.++..-.
T Consensus 64 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLC-AKIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEee-hhhCccHHHHHHHCCCEEEEecC
Confidence 69999998 68999999999999999985443
No 94
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=41.64 E-value=94 Score=23.70 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCC
Q psy2832 290 LKPDLIFTEKGISDLAQHFLLKANITAIRRVR 321 (362)
Q Consensus 290 ~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~ 321 (362)
.+|++|+| +++.+-+...|.++||.++....
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 68999998 68999999999999999985544
No 95
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=40.57 E-value=47 Score=26.37 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=36.1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC-C---hhhHHHHHHHhCCeEcc
Q psy2832 290 LKPDLIFTEKGISDLAQHFLLKANITAIRRV-R---KSDNNRIARACGATIVN 338 (362)
Q Consensus 290 ~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v-~---~~~l~~la~~tG~~iv~ 338 (362)
.+|++|+| +++.+-+...|.+.||.+++.- . .+.++.+.+.+-..+-+
T Consensus 62 ~~c~vvi~-~~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~~~ 113 (119)
T TIGR02663 62 KDCAILYC-LAIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNPPP 113 (119)
T ss_pred CCCcEEEE-hhcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCCCH
Confidence 69999998 6899999999999999998632 2 45667777665444433
No 96
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=40.21 E-value=1.3e+02 Score=21.17 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhh
Q psy2832 56 EMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVG 114 (362)
Q Consensus 56 ~ll~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~ 114 (362)
.|++.+-.+..+|+++.. .|...+...+..+.+.+..|++ .+++..++++...
T Consensus 15 ~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~PL~---~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 15 TLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSPPLP---ESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH
Confidence 456666777778888887 5555444445555535555664 6788888888753
No 97
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=35.13 E-value=60 Score=21.53 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHH
Q psy2832 56 EMLNVAEKFLSDQMHPTVIIKA 77 (362)
Q Consensus 56 ~ll~~~~~li~~gi~p~~ii~g 77 (362)
+-|.-+.+|++.|++|..+...
T Consensus 22 etL~ici~L~e~GVnPeaLA~v 43 (48)
T PF12554_consen 22 ETLSICIELCENGVNPEALAAV 43 (48)
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
Confidence 3445566667777777655443
No 98
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=30.17 E-value=2.8e+02 Score=21.97 Aligned_cols=50 Identities=20% Similarity=0.303 Sum_probs=41.8
Q ss_pred HHHHhCCCcEEEeCCCC------CHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCC
Q psy2832 285 NDIIALKPDLIFTEKGI------SDLAQHFLLKANITAIRRVRKSDNNRIARACGA 334 (362)
Q Consensus 285 ~~i~~~~v~~I~~~~gi------~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~ 334 (362)
+.++..++++|+...|+ ++.+..+|.+.++-++.....++++|.-+.-|+
T Consensus 55 e~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~ 110 (121)
T COG1504 55 EELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGK 110 (121)
T ss_pred HHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhcc
Confidence 45566899999997775 688999999999888888889999999888664
No 99
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.04 E-value=2.9e+02 Score=23.21 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=32.6
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee-CC------hhhHHHHHHHhCC
Q psy2832 284 CNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR-VR------KSDNNRIARACGA 334 (362)
Q Consensus 284 ~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~-v~------~~~l~~la~~tG~ 334 (362)
.+.+++.+||+|+....-..-....|.+.||.++-- -. .+.++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 467888999999975544443456789999954321 11 1346677777664
No 100
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=23.76 E-value=95 Score=19.84 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q psy2832 58 LNVAEKFLSDQMHPTVIIKAYRSALEDMVNILE 90 (362)
Q Consensus 58 l~~~~~li~~gi~p~~ii~g~~~a~~~~~~~l~ 90 (362)
.+++.+|.+.|.+...|.+-|..+...+..+|.
T Consensus 11 ~~~i~~l~~~G~si~~IA~~~gvsr~TvyR~l~ 43 (45)
T PF02796_consen 11 IEEIKELYAEGMSIAEIAKQFGVSRSTVYRYLN 43 (45)
T ss_dssp HHHHHHHHHTT--HHHHHHHTTS-HHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 567888889998888888877766666666554
No 101
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=23.32 E-value=1.8e+02 Score=21.30 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=32.0
Q ss_pred ccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhcc
Q psy2832 2 LMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDE 41 (362)
Q Consensus 2 ~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~ 41 (362)
++++.|-+.+..-|+.|.+.++=.+.+..+...++..-+.
T Consensus 20 l~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~~ 59 (81)
T TIGR03859 20 LLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPA 59 (81)
T ss_pred EEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcCC
Confidence 5667777888899999999999988888888877765443
No 102
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=22.21 E-value=2.8e+02 Score=26.56 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=34.8
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCC-------hhhHHHHHHHhCC
Q psy2832 284 CNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVR-------KSDNNRIARACGA 334 (362)
Q Consensus 284 ~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~-------~~~l~~la~~tG~ 334 (362)
.+.++..+||+|+...+-.......|.+.||.++..-. .+.++.+++.+|-
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 57888899999997544344456778999998864321 1345667777665
No 103
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.93 E-value=3.1e+02 Score=24.11 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHhCCCcEEEeCCCCCHH-HHHHHHhCCCeEEeeC--C----hhhHHHHHHHhCCe
Q psy2832 284 CNDIIALKPDLIFTEKGISDL-AQHFLLKANITAIRRV--R----KSDNNRIARACGAT 335 (362)
Q Consensus 284 ~~~i~~~~v~~I~~~~gi~~~-~~~~l~~~~I~~i~~v--~----~~~l~~la~~tG~~ 335 (362)
.+.+.+.+||+|+...+-+.- ....|.+.||.++-.- . .+.++.|++.+|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 577888999999986544333 3677889998655322 1 23477778777764
No 104
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=21.67 E-value=2.8e+02 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee-C-C----hhhHHHHHHHhCCe
Q psy2832 284 CNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR-V-R----KSDNNRIARACGAT 335 (362)
Q Consensus 284 ~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~-v-~----~~~l~~la~~tG~~ 335 (362)
.+.|+..+||+|+...+.+.-....|.+.||.++-- . + .+.++.+++.+|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 467888999999987666665667888999866421 1 1 23467777777643
No 105
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=20.92 E-value=2.4e+02 Score=24.66 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCC----CeEEeeCCh
Q psy2832 279 YVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKAN----ITAIRRVRK 322 (362)
Q Consensus 279 ~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~----I~~i~~v~~ 322 (362)
.+++.++.+....+.+|+.++|.++..-.+|.+.+ |..+..++.
T Consensus 77 ~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn 124 (220)
T COG4359 77 GFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSN 124 (220)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeec
Confidence 78888999999999999999999988777777665 776655544
No 106
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=20.35 E-value=1.7e+02 Score=22.19 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhC-----CCChHHHHHHHHH
Q psy2832 52 VLAGEMLNVAEKFLSD-----QMHPTVIIKAYRS 80 (362)
Q Consensus 52 iL~~~ll~~~~~li~~-----gi~p~~ii~g~~~ 80 (362)
+|.|+|++.|...-+. .+.|..+.+.|++
T Consensus 56 vFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 56 VFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 6889999999987643 4778888888875
No 107
>KOG0991|consensus
Probab=20.01 E-value=4.3e+02 Score=24.24 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=36.7
Q ss_pred HHHHhhccccChh--hHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q psy2832 16 NAILREITVQHPA--GKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALED 84 (362)
Q Consensus 16 ~tIl~~l~~~hP~--akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~a~~~ 84 (362)
--++|-.+..||. -+|+..+...- +=-|..+|.+.+++ |++|..|+..+.+.++.
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~~~~-----------~~~A~~il~~lw~l---gysp~Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACLKRN-----------IDEALKILAELWKL---GYSPEDIITTLFRVVKN 284 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHHhcc-----------HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 3456666778885 45555544321 33467788777766 99999999887766654
Done!