RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2832
(362 letters)
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 521 bits (1343), Expect = 0.0
Identities = 230/361 (63%), Positives = 277/361 (76%), Gaps = 54/361 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+DPMGGIVMTNDGNAILREI V HPA KSMIE++RTQDEEVGDGTTSVI+LAGEML+V
Sbjct: 44 MLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSV 103
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE FL +HPT+II+AY+ AL+D +++LE ++S P+D +D + ++++I++C+GTKF+ +
Sbjct: 104 AEPFLEQNIHPTIIIRAYKKALDDALSVLE-EISIPVDVNDDAAMLKLIQSCIGTKFVSR 162
Query: 121 WSDLACNIALDAVQTVTVEE-SGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
WSDL C++ALDAV+TV + +GRKEIDIKRYAKVEKIPGG IEDSCVL+GVM+NKDVTH
Sbjct: 163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTH 222
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
PKMRR IENPRIVLLDC LEYKKGESQTNVEI+ E DW
Sbjct: 223 PKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDW---------------------- 260
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
+ILQ+EEEYV+ + C DIIA+KPDL+ TEK
Sbjct: 261 ----------------------NRILQMEEEYVQLM--------CEDIIAVKPDLVITEK 290
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
G+SDLAQH+LLKANI+AIRRVRK+DNNRIARACGATIVNR EELRE DVGTG GLFE+KK
Sbjct: 291 GVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKK 350
Query: 360 V 360
+
Sbjct: 351 I 351
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 467 bits (1205), Expect = e-164
Identities = 208/360 (57%), Positives = 240/360 (66%), Gaps = 95/360 (26%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+DPMGGIV+TNDGNAILREI V HPA KSMIE++RTQDEEVGDGTTSVI+LAGE+L V
Sbjct: 44 MLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEILAV 103
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE FL +HPTVIIKAYR ALED + ILE ++S P+D +DR++++++IK+C+GTKF+ +
Sbjct: 104 AEPFLERGIHPTVIIKAYRKALEDALKILE-EISIPVDVNDRAQMLKIIKSCIGTKFVSR 162
Query: 121 WSDLACNIALDAVQTVTVEESGR-KEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
WSDL CN+ALDAV+TV VEE+GR KEIDIKRYAKVEKIPGG IEDS VL GVMLNKDVTH
Sbjct: 163 WSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTH 222
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
PKMRRRIENPRI VLLD
Sbjct: 223 PKMRRRIENPRI--------------------------------------------VLLD 238
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
C LEY L+ TEK
Sbjct: 239 CPLEY-------------------------------------------------LVITEK 249
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
G+SDLAQH+L+KA ITA+RRVRK+DNNRIARACGATIVNR EEL E DVGTGAGLFE+KK
Sbjct: 250 GVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTESDVGTGAGLFEVKK 309
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 288 bits (740), Expect = 2e-94
Identities = 123/360 (34%), Positives = 176/360 (48%), Gaps = 99/360 (27%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +TNDG IL+EI V+HPA K ++E+A++QD+EVGDGTT+V+VLAGE+L
Sbjct: 36 MLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKE 95
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AEK L+ +HPT II+ Y A+E + IL+ +++ P+D DR +L++V + +K +
Sbjct: 96 AEKLLAAGIHPTEIIRGYEKAVEKALEILK-EIAVPIDVEDREELLKVATTSLNSKLVSG 154
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
D + +DAV V E +VEK GG++EDS ++ G++ +K P
Sbjct: 155 GDDFLGELVVDAVLKVGKEN----GDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSP 210
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +R+E N +I+LLDC
Sbjct: 211 YMPKRLE--------------------------------------------NAKILLLDC 226
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
LEY ++ EKG
Sbjct: 227 KLEY-------------------------------------------------VVIAEKG 237
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I D A H+L K I A+RRVRK D RIA+A GATIV+R E+L ED+GT AGL E K+
Sbjct: 238 IDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPEDLGT-AGLVEETKI 296
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 259 bits (665), Expect = 2e-82
Identities = 131/360 (36%), Positives = 202/360 (56%), Gaps = 55/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G + +TNDG IL+E+ ++HPA K ++E+A+TQDEEVGDGTT+ +VLAGE+L
Sbjct: 43 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEK 102
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE L +HPTVII+ YR A E + +L+ +++ +D D+ L ++ K + K
Sbjct: 103 AEDLLDQNIHPTVIIEGYRLAAEKALELLD-EIAIKVDPDDKDTLRKIAKTSLTGKGAEA 161
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
D ++ +DAV V + G+ +D+ K+EK GG+++D+ ++RG++++K+V HP
Sbjct: 162 AKDKLADLVVDAVLQVAEKRDGKYVVDLD-NIKIEKKTGGSVDDTELIRGIVIDKEVVHP 220
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +R+EN +I LLD LE KK E + I
Sbjct: 221 GMPKRVENAKIALLDAPLEVKKTEIDAKIRI----------------------------- 251
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
T+ + + LE+E E + +E V+K I +++F +KG
Sbjct: 252 ----------TSPDQLQAF-------LEQE--EAMLKEMVDK----IADTGANVVFCQKG 288
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L KA I A+RRV+KSD ++ARA GA IV ++L ED+G A L E +KV
Sbjct: 289 IDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTNIDDLTPEDLGE-AELVEERKV 347
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 252 bits (645), Expect = 6e-80
Identities = 121/360 (33%), Positives = 187/360 (51%), Gaps = 65/360 (18%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML++ G I +TNDG IL+EI +QHPA K ++E A++QDEEVGDGTT+ +VLAGE+L
Sbjct: 17 MLVNHGGKITITNDGATILKEIEIQHPAAKLLVEAAKSQDEEVGDGTTTAVVLAGELLEE 76
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AEK + +HPT II+ Y ALE + LE ++S P+ D L+ V + + +K +
Sbjct: 77 AEKLIEAGIHPTDIIRGYELALEIALKALE-ELSIPVS-DDDEDLLNVARTSLNSKISSR 134
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
S+L + +DAV + ++ D+ V KI GG++EDS ++ G++L+K P
Sbjct: 135 ESELLGKLVVDAVLLII------EKFDVGN-IGVIKIEGGSLEDSELIEGIVLDKGYLSP 187
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +R+ENP+I+LLDC LEY+
Sbjct: 188 DMPKRLENPKILLLDCPLEYE--------------------------------------- 208
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
K E + EE+ + + I+ +L+ +KG
Sbjct: 209 -----KTEKVIISTAEELERLLEA-----------EEKQLLPLLEKIVDAGVNLVIIQKG 252
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLA HFL K I A+RRV+K D R+A+A GAT+V+ ++L +++G+ AG E +++
Sbjct: 253 IDDLALHFLAKNGILALRRVKKEDLERLAKATGATVVSSLDDLEPDELGS-AGKVEEREI 311
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 232 bits (593), Expect = 7e-72
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 57/362 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G + +TNDG IL+E+ ++HPA K ++E+A+TQDEEVGDGTT+ +VLAGE+L
Sbjct: 44 MLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVGDGTTTAVVLAGELLEK 103
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFI-G 119
AE L +HPTVII+ YR A E + I++ ++T + DR L +V + + +K
Sbjct: 104 AEDLLEQDIHPTVIIEGYRKAAEKALEIIDE-IATKISPEDRDLLKKVAETSLTSKASAE 162
Query: 120 KWSDLACNIALDAVQTVTVEES-GRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVT 178
D N+ ++AV+ V G+ +D+ K+ K GG+I+D+ ++ G++++K+V
Sbjct: 163 VAKDKLANLVVEAVKQVAELRGDGKYYVDLD-NIKIVKKTGGSIDDTELVEGIVVDKEVV 221
Query: 179 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
HP M +R+EN +I LLD LE +K E + RI +P
Sbjct: 222 HPGMPKRVENAKIALLDAPLEVEKTEIDAEI-------------------RITDP----- 257
Query: 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTE 298
+ K L EE + +E V+K I +++ +
Sbjct: 258 --------------------DQIQKFLDQEEAML----KEMVDK----IADAGANVVICQ 289
Query: 299 KGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIK 358
KGI D+AQH+L KA I A+RRV+KSD ++ARA GA IV+ +E+ E D+G AGL E +
Sbjct: 290 KGIDDVAQHYLAKAGILAVRRVKKSDIEKLARATGARIVSSIDEITESDLGY-AGLVEER 348
Query: 359 KV 360
KV
Sbjct: 349 KV 350
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 225 bits (575), Expect = 4e-69
Identities = 110/364 (30%), Positives = 170/364 (46%), Gaps = 64/364 (17%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D G I +TNDG IL+EI ++HP K ++E+A+ QD+E GDGTT+ +VLAG +L
Sbjct: 39 MLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKE 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AEK ++ +HPTVI + YR A+E V L+ +++ P+ S+ I V +K
Sbjct: 99 AEKLIAAGIHPTVIKRGYRLAVEKAVEELK-EIAKPVSDSEEELKIA--ITSVASKSANS 155
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNK-DVTH 179
++ + ++AV+ V KE + K GG+ + V+ G++ +K ++
Sbjct: 156 DEEIG-ELVVEAVEKV------GKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSP 208
Query: 180 PKM-RRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
M +R+ENP+I+LLD LE KK E + I
Sbjct: 209 YFMPDKRLENPKILLLDKKLEIKKPELPLEIVI--------------------------- 241
Query: 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTE 298
S + I+ E E E E + L + N + +
Sbjct: 242 ---------SSGKPLLIIAEDE-------EGEALATLVVNILRGGANVV-------VVKA 278
Query: 299 KGISDLAQHFLLKANITAIRRVRKSD-NNRIARACGATIVNRTEELREEDVGTG-AGLFE 356
GI DLA+ +L I RRV+K D R+A+ GA IV+ ++L +G G AGL E
Sbjct: 279 PGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKIVSVLKDLTTIVLGEGAAGLVE 338
Query: 357 IKKV 360
K
Sbjct: 339 ETKT 342
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 190 bits (484), Expect = 1e-55
Identities = 105/338 (31%), Positives = 172/338 (50%), Gaps = 54/338 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G + +TNDG IL+ + V+HPA K ++E+A+ QD+EVGDGTTSV+++A E+L
Sbjct: 36 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGTTSVVIIAAELLKR 95
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A + + ++HPT II YR A ++ V ++ +S +D + LI V K + +K IG
Sbjct: 96 ANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGA 155
Query: 121 WSDLACNIALDAVQTV-TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
SD N+ +DA+ V T E G+ + IK + K G + ++S ++ G LN
Sbjct: 156 DSDFFANMVVDAILAVKTTNEKGKTKYPIKA-VNILKAHGKSAKESYLVNGYALNCTRAS 214
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
M R++N +I LD L +K + + V++V + +P
Sbjct: 215 QGMPTRVKNAKIACLDFNL--QKTKMKLGVQVV-----------------VTDPE----- 250
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
+ KI Q E + +E ++K I+A +++ T
Sbjct: 251 --------------------KLEKIRQRESDIT----KERIKK----ILAAGANVVLTTG 282
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
GI D+ + ++A A+RRV+K D RIA+A GAT+V
Sbjct: 283 GIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 187 bits (477), Expect = 1e-54
Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 52/348 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G + +TNDG IL+ + V+HPA K ++E+A+ QD EVGDGTTSV+++A E+L
Sbjct: 40 MLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDGTTSVVIIAAELLKR 99
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A + + +++HPT II YR AL++ V ++ +S +D + LI V K + +K IG
Sbjct: 100 ANELVKNKVHPTSIISGYRLALKEAVKYIKENLSVSVDTLGKEALINVAKTSMSSKIIGL 159
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
SD NI +DAV V + + + K G + +S +++G LN
Sbjct: 160 DSDFFSNIVVDAVLAVKTTNENGEIKYPIKAVNILKAHGKSARESYLVKGYALNCTRASQ 219
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+M +RI+ +I LD L+ K + V+IV +++P
Sbjct: 220 QMPKRIKKAKIACLDFNLQ--KAKMALGVQIV-----------------VDDPA------ 254
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
+LE+ + + E + ++ I+ +++ T G
Sbjct: 255 -------------------------KLEQ--IRQREADITKERIKKILDAGANVVLTTGG 287
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDV 348
I D+ + ++A +RR +K D RIA+A G T+V+ +L E+
Sbjct: 288 IDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEET 335
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 175 bits (446), Expect = 3e-50
Identities = 106/356 (29%), Positives = 179/356 (50%), Gaps = 59/356 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+L+ P G + +TNDG IL ++ V H K ++E++++QD+E+GDGTT V+VLAG +L
Sbjct: 51 ILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDGTTGVVVLAGALLEQ 110
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVST--PLDKSDRSKLIEVIKACVGTKFI 118
AEK L +HP I Y A + V LE +++ ++ LI+ +G+K +
Sbjct: 111 AEKLLDRGIHPIRIADGYEQACKIAVEHLE-EIADKIEFSPDNKEPLIQTAMTSLGSKIV 169
Query: 119 GKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVT 178
+ IA+DAV +V E RK+++ + KVE GG +ED+ +++G++++KD +
Sbjct: 170 SRCHRQFAEIAVDAVLSVADLE--RKDVNFE-LIKVEGKVGGRLEDTKLVKGIVIDKDFS 226
Query: 179 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
HP+M + +++ +I +L C E K +++ ++I
Sbjct: 227 HPQMPKEVKDAKIAILTCPFEPPKPKTKHKLDI--------------------------- 259
Query: 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTE 298
T+VE ++ K+ + E++Y E VE+ D A +L+ +
Sbjct: 260 ------------TSVE-----DYKKLQEYEQKYF----REMVEQ-VKDAGA---NLVICQ 294
Query: 299 KGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGL 354
G D A H LL+ + A+R V + IA A G IV R E+L E +G AGL
Sbjct: 295 WGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIVPRFEDLSPEKLGK-AGL 349
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 173 bits (441), Expect = 1e-49
Identities = 111/370 (30%), Positives = 191/370 (51%), Gaps = 74/370 (20%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+++D G + ++NDG IL+ + + HPA K++++IA++QD EVGDGTTSV+VLAGE L
Sbjct: 44 LIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKE 103
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGT----K 116
A+ F+ D +HP +II+ YR AL+ + ++ +++ +DK D+ + E+++ C T K
Sbjct: 104 AKPFIEDGVHPQIIIRGYRKALQLAIEKIK-EIAVNIDKEDKEEQRELLEKCAATALNSK 162
Query: 117 FIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
I + + +DAV ++ ++ I IK K+PGG++EDS ++ GV K
Sbjct: 163 LIASEKEFFAKMVVDAVLSLD-DDLDLDMIGIK------KVPGGSLEDSQLVNGVAFKKT 215
Query: 177 VTH------PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRI 230
++ PK + +NP+I+LL+ LE K + N E+ R+
Sbjct: 216 FSYAGFEQQPK---KFKNPKILLLNVELELKA--EKDNAEV-----------------RV 253
Query: 231 ENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIAL 290
E+P EY+ IV+ AE+ I +KLE+ I+
Sbjct: 254 EDP--------EEYQA--------IVD-AEWKIIY-------DKLEK---------IVKS 280
Query: 291 KPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGT 350
+++ ++ I DLA + +I RV + D R+A+A G +I + ++ +GT
Sbjct: 281 GANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGT 340
Query: 351 GAGLFEIKKV 360
GLFE ++V
Sbjct: 341 -CGLFEERQV 349
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 166 bits (422), Expect = 8e-47
Identities = 104/358 (29%), Positives = 179/358 (50%), Gaps = 56/358 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+ P G I +TNDG IL ++ V +P K M+E++++QD+E+GDGTT V+VLAG +L
Sbjct: 55 MLISPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQ 114
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
AE+ L +HP I + + A V L E D ++R LI+ K +G+K +
Sbjct: 115 AEELLDKGIHPIKIAEGFEEAARVAVEHLEEISDEISADNNNREPLIQAAKTSLGSKIVS 174
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
K IA+DAV V E R+++D KVE GG++ED+ +++G++++KD +H
Sbjct: 175 KCHRRFAEIAVDAVLNVADME--RRDVDFD-LIKVEGKVGGSLEDTKLIKGIIIDKDFSH 231
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
P+M + +++ +I +L C E K +++ ++I + +
Sbjct: 232 PQMPKEVKDAKIAILTCPFEPPKPKTKHKLDISSVEE----------------------- 268
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
YKK ++K E++ +++ +DI +++ +
Sbjct: 269 ----YKK-------------------------LQKYEQQKFKEMIDDIKKSGANIVICQW 299
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEI 357
G D A H LL+ ++ A+R V + IA A G IV R +EL ++ +G + EI
Sbjct: 300 GFDDEANHLLLQNDLPAVRWVGGQELELIAIATGGRIVPRFQELSKDKLGKAGLVREI 357
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 163 bits (415), Expect = 7e-46
Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 64/359 (17%)
Query: 7 GGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLS 66
G ++NDG IL+ + + HPA K++++IA++QD EVGDGTTSV++LAGE+L A+ F+
Sbjct: 52 GKATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIE 111
Query: 67 DQMHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKSDRSKLIEVIKA-CVGTKFIGKWSDL 124
+ +HP +II+ YR AL + + E V+ +K ++ +L+E A + +K I +
Sbjct: 112 EGVHPQLIIRGYREALSLAIEKIKEIAVTIDSEKGEQRELLEKCAATALSSKLIAHNKEF 171
Query: 125 ACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVT---HPK 181
+ +DAV ++ ++ K I +K K+ GG +EDS ++ GV K + +
Sbjct: 172 FSKMIVDAVLSLDRDDLDLKLIGVK------KVQGGALEDSVLVNGVAFKKTFSYAGFEQ 225
Query: 182 MRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCT 241
++ NP+I+LL+ LE K + N EI R+E+
Sbjct: 226 QPKKFANPKILLLNVELELKA--EKDNAEI-----------------RVEDVE------- 259
Query: 242 LEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGI 301
+Y+ IV +AE+ I EKL + I+ +++ ++ I
Sbjct: 260 -DYQ--------AIV-DAEWAIIF-------EKLRK---------IVESGANIVLSKLPI 293
Query: 302 SDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
DLA + NI RV D R+ +ACG +I + T +L + +GT LFE +++
Sbjct: 294 GDLATQYFADHNIFCAGRVSAEDMKRVIKACGGSIQSTTSDLEADVLGT-CALFEERQI 351
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 161 bits (409), Expect = 4e-45
Identities = 102/361 (28%), Positives = 175/361 (48%), Gaps = 60/361 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+ G +++TNDG IL++++V HPA K ++E+++ QD E GDGTTSV+VLAG +L+
Sbjct: 36 MIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGALLSA 95
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
E L +HPTVI ++++ A + V IL+ +S P+D +DR LI+ + +K + +
Sbjct: 96 CESLLKKGIHPTVISESFQIAAKKAVEILD-SMSIPVDLNDRESLIKSATTSLNSKVVSQ 154
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+S L IA+DAV ++ + +D+K V+K+ GGTIED+ ++ G++ + +
Sbjct: 155 YSSLLAPIAVDAV-LKVIDPATATNVDLKDIRIVKKL-GGTIEDTELVDGLVFTQKASK- 211
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
K G RIE +I L+
Sbjct: 212 --------------------KAGGP----------------------TRIEKAKIGLIQF 229
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
L K + N+ + + A+ +IL+ E +Y+ + C I +++ +K
Sbjct: 230 CLSPPKTDMDNNIVVNDYAQMDRILREERKYILNM--------CKKIKKSGCNVLLIQKS 281
Query: 301 I-----SDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLF 355
I SDLA HFL K I ++ + + + I + G V + E+ +G+ A L
Sbjct: 282 ILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKPVASIDHFTEDKLGS-ADLV 340
Query: 356 E 356
E
Sbjct: 341 E 341
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 144 bits (367), Expect = 8e-42
Identities = 76/259 (29%), Positives = 104/259 (40%), Gaps = 99/259 (38%)
Query: 102 RSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGT 161
R L++V + +K + W D + +DAV V + +D KVEKIPGG+
Sbjct: 1 RELLLQVATTSLNSK-LSSWDDFLGKLVVDAVLKVGPDN----RMDDLGVIKVEKIPGGS 55
Query: 162 IEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSV 221
+EDS ++ GV+ +K P M +R+E
Sbjct: 56 LEDSELVVGVVFDKGYASPYMPKRLE---------------------------------- 81
Query: 222 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVE 281
N +I+LLDC LEY
Sbjct: 82 ----------NAKILLLDCPLEY------------------------------------- 94
Query: 282 KVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTE 341
++ EKGI DLA H+L KA I A+RRV+K D RIARA GATIV+ E
Sbjct: 95 ------------VVIAEKGIDDLALHYLAKAGIMAVRRVKKEDLERIARATGATIVSSLE 142
Query: 342 ELREEDVGTGAGLFEIKKV 360
+L ED+GT A L E K+
Sbjct: 143 DLTPEDLGT-AELVEETKI 160
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 151 bits (384), Expect = 2e-41
Identities = 91/354 (25%), Positives = 172/354 (48%), Gaps = 59/354 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+ D G +++TNDG IL+++ V HPA K ++E+++ QD E GDGTTSV++LAG +L
Sbjct: 37 MIQDGKGEVIITNDGATILKQMAVLHPAAKMLVELSKAQDIEAGDGTTSVVILAGALLGA 96
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
E+ L+ +HPT+I ++++SA ++ + IL ++S P+D SDR +L++ + +K + +
Sbjct: 97 CERLLNKGIHPTIISESFQSAADEAIKIL-DEMSIPVDLSDREQLLKSATTSLSSKVVSQ 155
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+S L +A+DAV V ++ K +D+ V+K+ GGTI+D+ ++ G++ + +
Sbjct: 156 YSSLLAPLAVDAVLKV-IDPENAKNVDLNDIKVVKKL-GGTIDDTELIEGLVFTQKASK- 212
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
S P RIE +I L+
Sbjct: 213 ---------------------------------------SAGGP---TRIEKAKIGLIQF 230
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
+ K + + + + + A+ ++L K E Y+ + I +++ +K
Sbjct: 231 QISPPKTDMENQIIVNDYAQMDRVL--------KEERAYILNIVKKIKKTGCNVLLIQKS 282
Query: 301 I-----SDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
I +DLA HFL K I ++ + + + I + G + + + +G
Sbjct: 283 ILRDAVNDLALHFLAKMKIMVVKDIEREEIEFICKTIGCKPIASIDHFTADKLG 336
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 143 bits (363), Expect = 2e-38
Identities = 96/351 (27%), Positives = 164/351 (46%), Gaps = 61/351 (17%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+++ + + +TND ILRE+ VQHPA K ++ + Q+ E+GDGT VIVLAGE+LN
Sbjct: 46 MVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGDGTNLVIVLAGELLNK 105
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPL-DKSDRSKLIEVIKACVGTKFIG 119
AE+ + +HP+ IIK Y AL+ + +LE V + D D+ +LI+ +KA + +K G
Sbjct: 106 AEELIRMGLHPSEIIKGYEMALKKAMEVLEELVVWEIEDLRDKKELIKALKASISSKQYG 165
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD-VT 178
D + A TV + +D R V KI GG++ +S V++G++ N++
Sbjct: 166 N-EDFLSQLVAKACSTVLPKNPQNFNVDNIR---VVKIMGGSLSNSEVIKGMVFNREAEG 221
Query: 179 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
K R++ ++ + C L+ E++ V I N + LL
Sbjct: 222 SVK---RVKKAKVAVFSCPLDTATTETKGTVLIHNAEE--------------------LL 258
Query: 239 DCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTE 298
+ Y KGE E E ++ + + + ++I T
Sbjct: 259 N----YSKGE------------------------ENQIEAMIKAIADSGV----NVIVTG 286
Query: 299 KGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
+ D+A H+L + I ++ K + R+ + GAT + R E++G
Sbjct: 287 GSVGDMALHYLNRYGIMVLKIPSKFELRRLCKTVGATPLPRLGAPTPEELG 337
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 142 bits (360), Expect = 5e-38
Identities = 97/363 (26%), Positives = 168/363 (46%), Gaps = 58/363 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+ G I +T DGN +L E+ +QHP + A QDE GDGTTS ++L GE+L
Sbjct: 44 MLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDEITGDGTTSTVILIGELLKQ 103
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+++ + +HP +I + + A ++++ L+ D+ DR L+ V + + TK
Sbjct: 104 AERYILEGVHPRIITEGFEIARKELLEFLDKFKVKTEDEVDREFLLNVARTSLRTKLPID 163
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+D I +DAV + + ++ID+ +E + + D+ ++RG++L+ HP
Sbjct: 164 LADQLTEIVVDAVLAIKKDG---EDIDLFMVEIME-MKHKSATDTTLIRGLVLDHGARHP 219
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M RR++N I+ + +LEY+K E VN
Sbjct: 220 DMPRRVKNAYILTCNVSLEYEKTE-------VNSG------------------------- 247
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVE---KVCNDIIALKPD---L 294
Y E + K++ E ++V+ ++ +E KVC PD +
Sbjct: 248 -FFYSSAE-----------QREKLVAAERKFVDDRVKKIIELKKKVCGK----SPDKGFV 291
Query: 295 IFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGL 354
+ +KGI + L K I A+RR ++ + R+ ACG +N E+L E +G +
Sbjct: 292 VINQKGIDPPSLDLLAKEGILALRRAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLV 351
Query: 355 FEI 357
+E
Sbjct: 352 YET 354
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 140 bits (355), Expect = 1e-37
Identities = 66/204 (32%), Positives = 114/204 (55%), Gaps = 15/204 (7%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+++ + + +T+D ILRE+ VQHPA K ++ ++ Q+EE+GDGT V+VLAGE+L
Sbjct: 36 MVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNLVVVLAGELLEK 95
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPL-DKSDRSKLIEVIKACVGTKFIG 119
AE+ L +HP+ II+ Y AL+ + ILE V + D ++ ++ + +K + +K G
Sbjct: 96 AEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYG 155
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD--- 176
D + +A +V E G +D R V KI GG++EDS V+RG++ ++
Sbjct: 156 N-EDFLSPLVAEACISVLPENIGNFNVDNIR---VVKILGGSLEDSKVVRGMVFKREPEG 211
Query: 177 -VTHPKMRRRIENPRIVLLDCTLE 199
V R++ ++ + C +
Sbjct: 212 SVK------RVKKAKVAVFSCPFD 229
Score = 40.7 bits (96), Expect = 9e-04
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 293 DLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVG 349
++I + DLA H+ K I I+ K + R+ R GAT + R E++G
Sbjct: 233 NVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPEEIG 289
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 130 bits (329), Expect = 7e-34
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 10/207 (4%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIART-QDEEVGDGTTSVIVLAGEMLN 59
ML+ G I +T DGN +L E+ +QHP SMI A T QD+ GDGTTS ++L GE+L
Sbjct: 40 MLVSGAGDIKLTKDGNVLLSEMQIQHPTA-SMIARAATAQDDITGDGTTSNVLLIGELLK 98
Query: 60 VAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
AE+++ + +HP +I + + A + LE+ +DR L+ V + + TK
Sbjct: 99 QAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHA 158
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVE--KIPGGTIEDSCVLRGVMLNKDV 177
+D I +DAV + + + ID+ VE ++ + D+ ++RG++L+
Sbjct: 159 DLADQLTEIVVDAVLAIYKPD---EPIDLHM---VEIMQMQHKSDSDTKLIRGLVLDHGA 212
Query: 178 THPKMRRRIENPRIVLLDCTLEYKKGE 204
HP M +R+EN I+ + +LEY+K E
Sbjct: 213 RHPDMPKRVENAYILTCNVSLEYEKTE 239
Score = 58.0 bits (141), Expect = 3e-09
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 37/127 (29%)
Query: 223 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEK 282
HP M +R+EN I+ + +LEY+K E VN F +
Sbjct: 214 HPDMPKRVENAYILTCNVSLEYEKTE-------VNSGFFYSV------------------ 248
Query: 283 VCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE 342
+ +KGI + L K I A+RR ++ + R+ ACG +N ++
Sbjct: 249 ------------VINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDD 296
Query: 343 LREEDVG 349
L E +G
Sbjct: 297 LSPECLG 303
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 128 bits (324), Expect = 5e-33
Identities = 69/191 (36%), Positives = 107/191 (56%), Gaps = 18/191 (9%)
Query: 7 GGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLS 66
GG+ +TNDG IL+ I V +PA K +++I++ QD+EVGDGTTSV VLA E+L AEK ++
Sbjct: 49 GGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVA 108
Query: 67 DQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSD----RSKLIEVIKACVGTKFIGKWS 122
++HP II+ YR A L + S SD R L+ + + + +K + +
Sbjct: 109 QKIHPQTIIEGYRMATAAAREALLS--SAVDHSSDEEAFREDLLNIARTTLSSKILTQDK 166
Query: 123 DLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD--VTHP 180
+ +A+DAV + G +D ++ K GG+++DS + G +L+K V P
Sbjct: 167 EHFAELAVDAVLRL----KGSGNLD---AIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQP 219
Query: 181 KMRRRIENPRI 191
K RIEN +I
Sbjct: 220 K---RIENAKI 227
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 123 bits (310), Expect = 6e-33
Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 61/220 (27%)
Query: 119 GKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVT 178
W D+ + A V + ++DI++Y K++KIPGG+ DS V+ GV+
Sbjct: 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVV------ 70
Query: 179 HPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLL 238
T ++V H +M +I+NPRI+LL
Sbjct: 71 -----------------FT---------------------KNVAHKRMPSKIKNPRILLL 92
Query: 239 DCTLEYKKGESQ-TNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFT 297
LEY++ E++ +++ V ILQ E+EY++ + + I+AL+PD+I
Sbjct: 93 QGPLEYQRVENKLLSLDPV-------ILQ---------EKEYLKNLVSRIVALRPDVILV 136
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
EK +S +AQ LL+A IT + V+ S RI+R GA I+
Sbjct: 137 EKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCTGADII 176
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 126 bits (319), Expect = 2e-32
Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 6 MGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFL 65
G + +TNDG IL+ + + +PA K +++I++TQDEEVGDGTTSV+VLAGE+L AEK L
Sbjct: 60 SGNVTVTNDGATILKSVWLDNPAAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLL 119
Query: 66 SDQMHPTVIIKAYRSALEDMVNILET-KVSTPLDKSD-RSKLIEVIKACVGTKFIGKWSD 123
++HP II+ +R AL+ LE D+ + L+ + + + +K + D
Sbjct: 120 DQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKD 179
Query: 124 LACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMR 183
+A+DAV + G +D Y ++ K PGGT+ DS + G +L K +
Sbjct: 180 HFAKLAVDAVLRL----KGSGNLD---YIQIIKKPGGTLRDSYLEDGFILEKKIG----- 227
Query: 184 RRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLE 243
V PK R+EN +I++ + ++
Sbjct: 228 -------------------------------------VGQPK---RLENCKILVANTPMD 247
Query: 244 YKKGESQTNVEI----VNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
K ++I V K+ ++E E+E ++ + I+A ++ +
Sbjct: 248 TDK------IKIYGAKVKVDSMEKVAEIEAA-----EKEKMKNKVDKILAHGCNVFINRQ 296
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEI 357
I + + +A I AI R+A A GA IV+ + + +G + EI
Sbjct: 297 LIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEI 354
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 110 bits (277), Expect = 7e-27
Identities = 71/203 (34%), Positives = 113/203 (55%), Gaps = 20/203 (9%)
Query: 7 GGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLS 66
I++TNDG IL+ I + +PA K ++ I++ QD+EVGDGTTSV VLA E+L AEK ++
Sbjct: 49 NTIMVTNDGATILKSIGLDNPAAKVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLIN 108
Query: 67 DQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSD-----RSKLIEVIKACVGTKFIGKW 121
++HP II+ YR A + L+ + +D S R LI + + + +K + +
Sbjct: 109 QKIHPQTIIEGYRLATK---AALDALTKSAVDNSSDKTKFREDLINIARTTLSSKILSQH 165
Query: 122 SDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNK--DVTH 179
D +A+DAV + ++ S E ++ KI GG + DS + G +L K V
Sbjct: 166 KDHFAQLAVDAV--LRLKGSTNLE-----AIQIIKILGGKLSDSFLDEGFILAKKIGVNQ 218
Query: 180 PKMRRRIENPRIVLLDCTLEYKK 202
PK RIEN +I++ + T++ K
Sbjct: 219 PK---RIENAKILIANTTMDTDK 238
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 47.1 bits (113), Expect = 9e-06
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGE 56
++ G +T DG + +EI ++ P G ++ E+A ++ GDGTT+ VLA
Sbjct: 36 VIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLARA 95
Query: 57 MLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTK 116
++ K ++ +P + + A+E +V L+ K+S P+ + + I A G +
Sbjct: 96 IIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELK-KLSKPVKTKEEIAQVATISAN-GDE 153
Query: 117 FIGKWSDLACNIALDAVQ------TVTVEES 141
IG+ IA +A++ +TVEE
Sbjct: 154 EIGE------LIA-EAMEKVGKDGVITVEEG 177
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 44.0 bits (105), Expect = 9e-05
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 57/215 (26%)
Query: 5 PMGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNV 60
G +T DG +I +EI ++ P G ++ E+A ++ GDGTT+ VLA ++
Sbjct: 42 SFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQE 101
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGT----- 115
K ++ +P + + A+E +V L ++ P+ S+ A V T
Sbjct: 102 GLKNVAAGANPMDLKRGIDKAVEAVVEEL-KALARPVSGSEEI-------AQVATISANG 153
Query: 116 -----KFIGKWSDLACNIALDAVQT---VTVEESGRKEIDIKRYAKVEKIPGGTIEDSCV 167
+ I + A++ V +TVEES E +++ V
Sbjct: 154 DEEIGELIAE--------AMEKVGKDGVITVEESKTLETELE-----------------V 188
Query: 168 LRGVMLNKD------VTHP-KMRRRIENPRIVLLD 195
G+ ++ VT P +M +E+P I+L D
Sbjct: 189 TEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTD 223
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of pfam00118 [Protein fate,
Protein folding and stabilization].
Length = 524
Score = 41.1 bits (97), Expect = 7e-04
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 7 GGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +T DG + +EI ++ G ++ E+A ++ GDGTT+ VLA ++
Sbjct: 43 GAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGL 102
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWS 122
K ++ +P + + A+E +V L+ K+S P+ + I A + IG
Sbjct: 103 KNVAAGANPIELKRGIEKAVEAVVEELK-KLSKPVKGKKEIAQVATISAN-NDEEIG--- 157
Query: 123 DLACNIALDAVQTV------TVEES 141
++ +A++ V TVEES
Sbjct: 158 ----SLIAEAMEKVGKDGVITVEES 178
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 38.9 bits (91), Expect = 0.004
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 7 GGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +T DG + +EI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 45 GAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGA 104
Query: 63 KFLSDQMHP 71
K ++ M+P
Sbjct: 105 KLVAAGMNP 113
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 35.9 bits (83), Expect = 0.031
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 31/200 (15%)
Query: 7 GGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +TNDG I +EI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 45 GAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGA 104
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWS 122
K ++ +P + + A+ +V L+ + P+ + + I A G IG+
Sbjct: 105 KAVAAGANPMDLKRGIDRAVAAVVEELK-ANARPVTTNAEIAQVATISAN-GDAEIGR-- 160
Query: 123 DLACNIALDAVQTV------TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
+ +A++ V TVEES E + +E + G + RG +
Sbjct: 161 -----LVAEAMEKVGNEGVITVEESKTAETE------LEVVEGMQFD-----RGYLSPYF 204
Query: 177 VTHP-KMRRRIENPRIVLLD 195
VT KM +E+P I++ +
Sbjct: 205 VTDADKMEAELEDPYILIHE 224
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 35.8 bits (82), Expect = 0.035
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 7/147 (4%)
Query: 7 GGIVMTNDGNAILREITVQ---HPAGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +T DG + +EI ++ G M+ E+A + GDGTT+ VLA ++
Sbjct: 45 GAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGA 104
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKW- 121
K ++ M+P + + A+E +V L K S + +D + I A G IGK+
Sbjct: 105 KSVAAGMNPMDLKRGIDLAVEAVVADLV-KNSKKVTSNDEIAQVGTISAN-GDAEIGKFL 162
Query: 122 SDLACNIALDAVQTVTVEESGRKEIDI 148
+D + + V TV +S E+D+
Sbjct: 163 ADAMKKVGNEGVITVEEAKSLETELDV 189
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 34.9 bits (81), Expect = 0.067
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 4 DPMGGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLN 59
G +T DG + + I G +I ++A +++ GDGTT+ +LA +
Sbjct: 53 QEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFR 112
Query: 60 VAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSD 101
K ++ ++P + + A++ ++ L+ + S P+ +
Sbjct: 113 EGCKAVAAGLNPMDLKRGIDLAVKVVLESLK-EQSRPVKTKE 153
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 34.3 bits (80), Expect = 0.11
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 12 TNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLN 59
T DG + +EI ++ P G ++ E+A ++ GDGTT+ VLA ++
Sbjct: 49 TKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVR 100
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 33.3 bits (76), Expect = 0.19
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 31/198 (15%)
Query: 7 GGIVMTNDGNAILREITVQ---HPAGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +T DG + +EI ++ G M+ E+A ++ GDGTT+ VLA ++
Sbjct: 45 GAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGA 104
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWS 122
K ++ M+P + + A+ +V +E K + P+ S + I A G IGK
Sbjct: 105 KAVAAGMNPMDLKRGIDIAVAAVVKDIE-KRAKPVASSAEIAQVGTISAN-GDAAIGK-- 160
Query: 123 DLACNIALDAVQTV------TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
+ A+Q V TVEE+ E + V+ + G + RG +
Sbjct: 161 -----MIAQAMQKVGNEGVITVEENKSLETE------VDIVEGMKFD-----RGYLSPYF 204
Query: 177 VTHP-KMRRRIENPRIVL 193
VT+ KM +++ I+L
Sbjct: 205 VTNAEKMTVELDDAYILL 222
>gnl|CDD|238866 cd01828, sialate_O-acetylesterase_like2,
sialate_O-acetylesterase_like subfamily of the
SGNH-hydrolases, a diverse family of lipases and
esterases. The tertiary fold of the enzyme is
substantially different from that of the alpha/beta
hydrolase family and unique among all known hydrolases;
its active site closely resembles the Ser-His-Asp(Glu)
triad found in other serine hydrolases.
Length = 169
Score = 32.3 bits (74), Expect = 0.24
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 285 NDIIALKPDLIFTEKGISDLAQHFLLK---AN-ITAIRRVRKSDNN 326
++ +AL+P IF GI+DLAQ + AN T + ++RK N
Sbjct: 42 DEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPN 87
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 31.7 bits (72), Expect = 0.60
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 16 NAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAE--KFLSDQMHPTV 73
N +L V A SM DE +G+ + + IV+ L A+ +FL ++
Sbjct: 447 NLLLAHPAVHDAALVSM------PDELLGEKSCAFIVVRDPALKAAQLRRFLRERG---- 496
Query: 74 IIKAYRSALEDMVNILETKVSTPLDKSDRSKL 105
+ Y+ L D V +++ T + K D+ L
Sbjct: 497 -LAEYK--LPDRVEFVDSLPLTAVGKVDKKAL 525
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
Length = 529
Score = 31.6 bits (72), Expect = 0.63
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 13 NDGNAILREITVQHPA---GKSMIEIARTQDEEV-GDGTTSVIVLAGEMLNVAEKFLSDQ 68
NDG I +EI ++ G ++I A ++ +V GDGTT+ VLA ++ K ++
Sbjct: 50 NDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAG 109
Query: 69 MHPTVIIKAYRSALEDMVN 87
+P + + A + +V+
Sbjct: 110 ANPISLKRGIEKATQYVVS 128
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 31.0 bits (70), Expect = 0.97
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 11 MTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLS 66
+ NDG + +E+ ++ P K + + A ++ GDGTT+ +VLA ++ K ++
Sbjct: 104 IVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVA 163
Query: 67 DQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSD 101
+P I + + +V L+ K+S ++ S+
Sbjct: 164 AGANPVQITRGIEKTAKALVKELK-KMSKEVEDSE 197
>gnl|CDD|153301 cd07617, BAR_Endophilin_B2, The Bin/Amphiphysin/Rvs (BAR) domain of
Endophilin-B2. BAR domains are dimerization, lipid
binding and curvature sensing modules found in many
different proteins with diverse functions. Endophilins
play roles in synaptic vesicle formation, virus budding,
mitochondrial morphology maintenance, receptor-mediated
endocytosis inhibition, and endosomal sorting.
Endophilins contain an N-terminal N-BAR domain (BAR
domain with an additional N-terminal amphipathic helix),
followed by a variable region containing proline
clusters, and a C-terminal SH3 domain. They are
classified into two types, A and B. Vertebrates contain
two endophilin-B isoforms. Endophilin-B proteins are
cytoplasmic proteins expressed mainly in the heart,
placenta, and skeletal muscle. Endophilin-B2, also
called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is
a cytoplasmic protein that interacts with the apoptosis
inducer Bax. It is overexpressed in prostate cancer
metastasis and has been identified as a cancer antigen
with potential utility in immunotherapy. Endophilin-B2
forms homo- and heterodimers (with endophilin-B1)
through its BAR domain, which can bind and bend
membranes.
Length = 220
Score = 30.4 bits (68), Expect = 1.1
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 214 ESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNV---EIVNEAEFTKIL 265
E DW+ T K RR ++N R+ L C KK E + V E +AE T++L
Sbjct: 129 EGDWK---TISKERRLLQNRRLDLDACKARLKKAEHELRVAQTEFDRQAEVTRLL 180
>gnl|CDD|226728 COG4278, COG4278, Uncharacterized conserved protein [Function
unknown].
Length = 269
Score = 29.5 bits (66), Expect = 2.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 266 QLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLL 310
E E++E+E V I A +FT G+ DL H L+
Sbjct: 54 GASRELAEQVEKELRRFVLLTIAA--GKRVFTPSGVVDLYWHELI 96
>gnl|CDD|240664 cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic
domains. Saccharopine Dehydrogenase (SDH) catalyzes the
final step in the reversible NAD-dependent oxidative
deamination of saccharopine to alpha-ketoglutarate and
lysine, in the alpha-aminoadipate pathway of L-lysine
biosynthesis. SHD is structurally related to formate
dehydrogenase and similar enzymes, having a 2-domain
structure in which a Rossmann-fold NAD(P)-binding domain
is inserted within the linear sequence of a catalytic
domain of related structure.
Length = 351
Score = 28.7 bits (65), Expect = 4.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 130 LDAVQTVTVEESGRKEIDIKRYAKV--EKIPGGT 161
LDA VTVE S ++ + Y V E +P G+
Sbjct: 27 LDAGFKVTVERSPQRIFPDEEYEAVGCELVPAGS 60
>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein.
Length = 236
Score = 28.7 bits (65), Expect = 4.6
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 262 TKILQLEEEYVEKLEEEYVEKVCNDIIAL 290
K ++L +EY +K+EEE + +CNDI+ L
Sbjct: 73 EKKVKLIKEYRKKVEEE-LINICNDILEL 100
>gnl|CDD|238870 cd01832, SGNH_hydrolase_like_1, Members of the SGNH-hydrolase
superfamily, a diverse family of lipases and esterases.
The tertiary fold of the enzyme is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; its active site
closely resembles the Ser-His-Asp(Glu) triad from other
serine hydrolases, but may lack the carboxlic acid.
Myxobacterial members of this subfamily have been
reported to be involved in adventurous gliding motility.
Length = 185
Score = 28.0 bits (63), Expect = 5.9
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 50 VIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNIL 89
V +LAG N D + P YR+ LE+ V L
Sbjct: 71 VTLLAG--GN-------DILRPGTDPDTYRADLEEAVRRL 101
>gnl|CDD|217467 pfam03274, Foamy_BEL, Foamy virus BEL 1/2 protein.
Length = 222
Score = 27.9 bits (62), Expect = 7.4
Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 130 LDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP---KMRRRI 186
LD ++ EE G KRY +++ P E SCV K+ +P K+R I
Sbjct: 3 LDEMELKVAEEPGENPGRPKRYTQIKTPPR---EPSCVTYHGYKEKEDKNPGDIKLRDWI 59
Query: 187 ENP---------RIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPK 225
NP R++L K E +V W +S T P
Sbjct: 60 PNPEEMSKSVCKRLILTGLYNAEKAAEIIKLPYVVP---WEQSHTAPT 104
>gnl|CDD|215467 PLN02866, PLN02866, phospholipase D.
Length = 1068
Score = 28.2 bits (63), Expect = 8.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 252 NVEIVNEAEFTKILQLEE-----EYVEKLEEEYV 280
N++IVN E K L++ + EY KL+E YV
Sbjct: 155 NLDIVNSREVCKFLEVSKLSFSPEYGPKLKEGYV 188
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 27.9 bits (62), Expect = 8.5
Identities = 19/133 (14%), Positives = 50/133 (37%), Gaps = 8/133 (6%)
Query: 220 SVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEY 279
+ +P+++ + I + + ESQ ++E V E + + EE
Sbjct: 362 GIVNPRVQSEKQRAIIKSGK--ISHINRESQEHIEEVIEYALDSGKEKAKLQATN-EERK 418
Query: 280 VEKVCNDIIALKPDLIFTEKGISD-LAQHFLLKANI----TAIRRVRKSDNNRIARACGA 334
+E++ N +I + + + + G L + L+ +RR+ + +
Sbjct: 419 MERLRNVLIQAQLEKLKMKLGHLKELEKSTSLERQELDANLLLRRLNAEEKLFAIDEVLS 478
Query: 335 TIVNRTEELREED 347
+N + + ++
Sbjct: 479 KCLNLISDDQGKN 491
>gnl|CDD|222124 pfam13433, Peripla_BP_5, Periplasmic binding protein domain. This
domain is found in a variety of bacterial periplasmic
binding proteins.
Length = 363
Score = 27.9 bits (63), Expect = 9.4
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 263 KIL--QLEEEYVEKLEEEY-------VEKVCNDIIALKPDLIF 296
+IL L+ + E + E Y + + I A KPD++F
Sbjct: 151 RILRELLKAKGGEVVGERYLPLGASDFQSIVAKIKAAKPDVVF 193
>gnl|CDD|206755 cd08774, 14-3-3, 14-3-3 domain. 14-3-3 domain is an essential part
of 14-3-3 proteins, a ubiquitous class of regulatory,
phosphoserine/threonine-binding proteins found in all
eukaryotic cells, including yeast, protozoa and
mammalian cells. 14-3-3 proteins play important roles in
many biological processes that are regulated by
phosphorylation, including cell cycle regulation, cell
proliferation, protein trafficking, metabolic regulation
and apoptosis. More than 300 binding partners of the
14-3-3 domain have been identified in all subcellular
compartments and include transcription factors,
signaling molecules, tumor suppressors, biosynthetic
enzymes, cytoskeletal proteins and apoptosis factors.
14-3-3 binding can alter the conformation, localization,
stability, phosphorylation state, activity as well as
molecular interactions of a target protein. They
function only as dimers, some preferring strictly
homodimeric interaction, while others form heterodimers.
Binding of the 14-3-3 domain to its target occurs in a
phosphospecific manner where it binds to one of two
consensus sequences of their target proteins; RSXpSXP
(mode-1) and RXXXpSXP (mode-2). In some instances,
14-3-3 domain containing proteins are involved in
regulation and signaling of a number of cellular
processes in phosphorylation-independent manner. Many
organisms express multiple isoforms: there are seven
mammalian 14-3-3 family members (beta, gamma, eta,
theta, epsilon, sigma, zeta), each encoded by a distinct
gene, while plants contain up to 13 isoforms. The
flexible C-terminal segment of 14-3-3 isoforms shows the
highest sequence variability and may significantly
contribute to individual isoform uniqueness by playing
an important regulatory role by occupying the ligand
binding groove and blocking the binding of inappropriate
ligands in a distinct manner. Elevated amounts of 14-3-3
proteins are found in the cerebrospinal fluid of
patients with Creutzfeldt-Jakob disease. In protozoa,
like Plasmodium or Cryptosporidium parvum 14-3-3
proteins play an important role in key steps of parasite
development.
Length = 225
Score = 27.5 bits (62), Expect = 9.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 258 EAEFTKILQLEEEYVEKLEEEYVEKVCNDIIAL 290
+ L+L +EY EK+E+E ++ +CNDI+ L
Sbjct: 68 SKGNEEKLKLIKEYKEKIEKE-LKDICNDILDL 99
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 28.2 bits (62), Expect = 9.7
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
++R+ +P +V + + V ++ E + P ++ + LD
Sbjct: 646 TRLRQICNHPALVDEGLEATFDR-----IVLLLREDKDFDYLKKPLIQLSKGK--LQALD 698
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVE 281
L K E +++ ++FT +L L E+Y++ L +YV
Sbjct: 699 ELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVR 740
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.371
Gapped
Lambda K H
0.267 0.0867 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,733,889
Number of extensions: 1870113
Number of successful extensions: 2167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2097
Number of HSP's successfully gapped: 95
Length of query: 362
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 264
Effective length of database: 6,590,910
Effective search space: 1740000240
Effective search space used: 1740000240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.6 bits)