RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2832
(362 letters)
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 427 bits (1100), Expect = e-148
Identities = 232/360 (64%), Positives = 274/360 (76%), Gaps = 53/360 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+DPMGGIVMTNDGNAILREI VQHPA KSMIEI+RTQDEEVGDGTTSVI+LAGEML+V
Sbjct: 37 MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSV 96
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE FL QMHPTV+I AYR AL+DM++ L+ K+S P+D S+R ++ +I + + TK I +
Sbjct: 97 AEHFLEQQMHPTVVISAYRKALDDMISTLK-KISIPVDTSNRDTMLNIINSSITTKVISR 155
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
WS LACNIALDAV+TV EE+GRKEIDIK+YA+VEKIPGG IEDSCVLRGVM+NKDVTHP
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+MRR I+NPRIVLLD +LEYKKGESQT++EI E D+
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDF----------------------- 252
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
T+ILQ+EEEY+++L C DII LKPD++ TEKG
Sbjct: 253 ---------------------TRILQMEEEYIQQL--------CEDIIQLKPDVVITEKG 283
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
ISDLAQH+L++ANITAIRRVRK+DNNRIARACGA IV+R EELREEDVGTGAGL EIKK+
Sbjct: 284 ISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKI 343
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 422 bits (1087), Expect = e-145
Identities = 186/367 (50%), Positives = 244/367 (66%), Gaps = 60/367 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEML-N 59
ML+DPMGG+V+TNDG+AILREI V HPA KSM+E++RTQDEEVGDGTT+VI+LAGE+L
Sbjct: 47 MLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQ 106
Query: 60 VAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
A + +HP +II+A + AL D + +++ +VS P+D + + + ++I+A +GTK++
Sbjct: 107 CAPYLIEKNIHPVIIIQALKKALTDALEVIK-QVSKPVDVENDAAMKKLIQASIGTKYVI 165
Query: 120 KWSDLACNIALDAVQTV------TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVML 173
WS+ C +ALDAV+TV TVE EIDIKRY +VEKIPGG + DS VL+GV+L
Sbjct: 166 HWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLL 225
Query: 174 NKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENP 233
NKDV HPKM R IENPR+VLLDC LEYKKGESQTN+EI E DW
Sbjct: 226 NKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDW---------------- 269
Query: 234 RIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPD 293
+ILQ+EEE V+ + C I+A++P
Sbjct: 270 ----------------------------NRILQIEEEQVQLM--------CEQILAVRPT 293
Query: 294 LIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAG 353
L+ TEKG+SDLAQH+LLK + +RRV+KSDNNRIAR GATIVNR E+L+E DVGT G
Sbjct: 294 LVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCG 353
Query: 354 LFEIKKV 360
LF+++ +
Sbjct: 354 LFKVEMI 360
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 411 bits (1060), Expect = e-142
Identities = 115/360 (31%), Positives = 198/360 (55%), Gaps = 54/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D MG IV+TNDG IL+E+ +QHPA K ++E+++TQD EVGDGTT+ VL+GE+L+
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ + +H T+I + YR A E ILE ++ + D + LI++ + K
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILE-TITIAISPDDEAALIKIAGTAITGKGAEA 119
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ + + + AV+++ EE ++++ K+EK GG+I+DS ++ G++++K+ +HP
Sbjct: 120 YKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHP 179
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M ++EN +I+LL C +E++K E + ++I + +
Sbjct: 180 NMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQL--------------------- 218
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
EE+ + ++ +IA +++F +KG
Sbjct: 219 -------------------------------FLDQEEKMMREMAEKVIASGANVVFCQKG 247
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I D+AQ+++ KA I A+RRV+KSD R+++ GATI+ +++ EDVGT AGL E K+V
Sbjct: 248 IDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGT-AGLVEEKEV 306
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 411 bits (1058), Expect = e-141
Identities = 118/360 (32%), Positives = 193/360 (53%), Gaps = 55/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TND IL +I +QHPA K M+E+A+TQD+E GDGTT+ +V+AGE+L
Sbjct: 51 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 110
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HP++I K Y A E IL+ +++ +D D L+++ + K
Sbjct: 111 AEELLDQNIHPSIITKGYALAAEKAQEILD-EIAIRVDPDDEETLLKIAATSITGKNAES 169
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+L +A++AV+ V ++ G+ +D+ K EK G +E+S ++RGV+++K+V HP
Sbjct: 170 HKELLAKLAVEAVKQVAEKKDGKYVVDLDN-IKFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+M +R+EN +I L++ LE KK E+ + I +
Sbjct: 229 RMPKRVENAKIALINEALEVKKTETDAKINITSPDQL----------------------- 265
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
L+ EE+ ++ + + I +++F +KG
Sbjct: 266 ---------------------MSFLEQEEKMLKDM--------VDHIAQTGANVVFVQKG 296
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L K I A+RRV+KSD ++A+A GA IV ++L ED+G A + E +K+
Sbjct: 297 IDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKL 355
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 409 bits (1053), Expect = e-140
Identities = 112/360 (31%), Positives = 196/360 (54%), Gaps = 55/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TNDG IL+E+ V+HPA K M+E+++TQD VGDGTT+ +++AG +L
Sbjct: 49 MLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQ 108
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A+ ++ +HPTVI + YR A E+ +++ ++ST + +++ L+++ + + +K
Sbjct: 109 AQGLINQNVHPTVISEGYRMASEEAKRVID-EISTKIGADEKALLLKMAQTSLNSKSASV 167
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
D I+ +AV++V G+ +D +V K GG I+D+ ++ G++++K+ HP
Sbjct: 168 AKDKLAEISYEAVKSVAELRDGKYYVDFDNI-QVVKKQGGAIDDTQLINGIIVDKEKVHP 226
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +++ +I LLD LE KK E TN+ I + S ++
Sbjct: 227 GMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQK--------------------- 265
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
EE + ++ + I ++ +++ T+KG
Sbjct: 266 -------------------------------FLAQEENMLREMVDKIKSVGANVVITQKG 294
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I D+AQH+L +A I A+RRV+KSD +++A+A GA+IV+ +E+ D+GT A E KV
Sbjct: 295 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGT-AERVEQVKV 353
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 407 bits (1049), Expect = e-140
Identities = 100/360 (27%), Positives = 183/360 (50%), Gaps = 55/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G I +TNDG IL ++ +QHPA K +++IA+ QDEE DGT + ++ +GE++
Sbjct: 58 MLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKK 117
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE L +HPT+II Y+ A E + ++ +++ + +D L ++ + +K +
Sbjct: 118 AEDLLYKDVHPTIIISGYKKAEEVALQTIQ-ELAQTVSINDTDLLRKIAMTSLSSKAVAG 176
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ +I + AV V + +D+ ++ K GG+I D+ ++ G++++K+V HP
Sbjct: 177 AREYIADIVVKAVTQVAELRGDKWYVDLDNI-QIVKKAGGSINDTQLVYGIVVDKEVVHP 235
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +R+EN +I L+D +LE +K E + I + + ++
Sbjct: 236 GMPKRLENAKIALIDASLEVEKPELDAEIRINDPTQMQK--------------------- 274
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
EE +++ + I+A ++I +KG
Sbjct: 275 -------------------------------FLDEEENLIKEKVDKILATGANVIICQKG 303
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I ++AQ +L K + A+RR +KSD ++ARA G +V+ +E+ E+D+G A L E +KV
Sbjct: 304 IDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGY-ASLIEERKV 362
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 404 bits (1041), Expect = e-139
Identities = 104/360 (28%), Positives = 174/360 (48%), Gaps = 57/360 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G I+++NDG IL+E+ V+HP K ++E+++ QD VGDGTT+ +VL+GE+L
Sbjct: 50 MLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQ 109
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE L +HPTVI YR A+ + I++ +D + L ++ + K G
Sbjct: 110 AETLLDQGVHPTVISNGYRLAVNEARKIID---EIAEKSTDDATLRKIALTALSGKNTGL 166
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+D ++ + AV V G+ +D KV+K GG++ D+ + G++++K+ H
Sbjct: 167 SNDFLADLVVKAVNAVAEVRDGKTIVDTAN-IKVDKKNGGSVNDTQFISGIVIDKEKVHS 225
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
KM ++N +I L+D LE KK E + V+I + S +
Sbjct: 226 KMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQD--------------------- 264
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
E +++ I +++ +KG
Sbjct: 265 -------------------------------FLNQETNTFKQMVEKIKKSGANVVLCQKG 293
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I D+AQH+L K I A+RRV+KSD ++A+A GA IV ++L +G A E +K+
Sbjct: 294 IDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGE-AETVEERKI 352
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 403 bits (1038), Expect = e-138
Identities = 103/365 (28%), Positives = 160/365 (43%), Gaps = 55/365 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +TNDG IL + VQHPAGK ++E+A+ QD E+GDGTTSV+++A E+L
Sbjct: 52 MLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKR 111
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A + + +++HPT II +R AL + + + +ST +D + LI + K + +K IG
Sbjct: 112 ANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGA 171
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
SD N+ +DA+ V + S + + V K G + +S ++ G LN V
Sbjct: 172 DSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQ 231
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +RI N +I LD
Sbjct: 232 AMPKRIAGG------------------------------------------NVKIACLDL 249
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
L+ + + I + + +I + E V + II ++ T KG
Sbjct: 250 NLQKARMAMGVQINIDDPEQLEQIRKREAGIVLER--------VKKIIDAGAQVVLTTKG 301
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTG-----AGLF 355
I DL ++A I +RR +K D RIARA GAT+V+ L E+
Sbjct: 302 IDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEV 361
Query: 356 EIKKV 360
K
Sbjct: 362 VQAKF 366
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 401 bits (1033), Expect = e-137
Identities = 108/360 (30%), Positives = 192/360 (53%), Gaps = 58/360 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G +V+TNDG ILRE++V+HPA K +IE+A+TQ++EVGDGTT+ +V+AGE+L
Sbjct: 47 MLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRK 106
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L +HPT+++K Y++A + +L+ ++ + D+ L ++ + K K
Sbjct: 107 AEELLDQNVHPTIVVKGYQAAAQKAQELLK-TIACEVGAQDKEILTKIAMTSITGKGAEK 165
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+ I ++AV V +E ++D K+EK G +I+D+ +++GV+++K+
Sbjct: 166 AKEKLAEIIVEAVSAVVDDE---GKVDKD-LIKIEKKSGASIDDTELIKGVLVDKERVSA 221
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+M +++ + +I LL+C +E K+ E+ + I + +
Sbjct: 222 QMPKKVTDAKIALLNCAIEIKETETDAEIRITDPAKLME--------------------- 260
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
+ EE+ ++ + +I A +++F +KG
Sbjct: 261 -------------------------------FIEQEEKMLKDMVAEIKASGANVLFCQKG 289
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
I DLAQH+L K I A RRV+KSD ++A+A GA ++ L +D+G AGL E +K+
Sbjct: 290 IDDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGD-AGLVEERKI 348
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 399 bits (1028), Expect = e-137
Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 57/361 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M++D G + +TNDG IL + V H K M+E++++QD+E+GDGTT V+VLAG +L
Sbjct: 38 MMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEE 97
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
AE+ L +HP I Y A + L + S +D + LI+ K +G+K +
Sbjct: 98 AEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVN 157
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
IA++AV TV + R+++D + KVE GG +ED+ +++GV+++KD +H
Sbjct: 158 SCHRQMAEIAVNAVL--TVADMQRRDVDFE-LIKVEGKVGGRLEDTKLIKGVIVDKDFSH 214
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
P+M +++E+ +I +L C E K +++ +++ + D++
Sbjct: 215 PQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDFKA-------------------- 254
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
++K E+E E++ I +L +
Sbjct: 255 --------------------------------LQKYEKEKFEEMIRQIKETGANLAVCQW 282
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
G D A H LL+ ++ A+R V + IA A G IV R EL E +G AGL +
Sbjct: 283 GFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVKEIS 341
Query: 360 V 360
Sbjct: 342 F 342
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 398 bits (1026), Expect = e-137
Identities = 97/365 (26%), Positives = 161/365 (44%), Gaps = 57/365 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G + +TNDG IL+ + V+HPA K + E+A QD+EVGDGTTSV+++A E+L
Sbjct: 38 MLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKN 97
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A++ + ++HPT +I YR A ++ V + + D+ R LI K + +K IG
Sbjct: 98 ADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGI 157
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
D N+ +DAV + + + V K G + +S ++ G LN V
Sbjct: 158 NGDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQ 217
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M +RI N +I LD +L+ K + V I + +
Sbjct: 218 GMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQ--------------------- 256
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
+ + E + ++ I+A ++I T G
Sbjct: 257 -------------------------------IRQRESDITKERIQKILATGANVILTTGG 285
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTG-----AGLF 355
I D+ + ++A A+RRV K D RIA+A GAT+++ L E+ A
Sbjct: 286 IDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEV 345
Query: 356 EIKKV 360
+++
Sbjct: 346 VQERI 350
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 396 bits (1020), Expect = e-135
Identities = 88/363 (24%), Positives = 172/363 (47%), Gaps = 53/363 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+L+ P G I +TNDG IL ++ + + K +++++++QD+E+GDGTT V+VLA +L+
Sbjct: 73 ILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQ 132
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILE---TKVSTPLDKSDRSKLIEVIKACVGTKF 117
A + + +HP I + A + ++ LE +S D+ R L+ K +G+K
Sbjct: 133 ALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKI 192
Query: 118 IGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV 177
+ K D +A++AV V + RK++D K++ GG+I DS ++ GV+L+KD
Sbjct: 193 VSKDHDRFAEMAVEAVINVM--DKDRKDVDFD-LIKMQGRVGGSISDSKLINGVILDKDF 249
Query: 178 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVL 237
+HP+M + + + ++ +
Sbjct: 250 SHPQMPKCVLPK--------------------------------------EGSDGVKLAI 271
Query: 238 LDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFT 297
L C E K +++ ++I + E+ K+ E++ +++ +D+ D++
Sbjct: 272 LTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEM--------IDDVKKAGADVVIC 323
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEI 357
+ G D A H LL+ ++ A+R V + IA + IV R ++L ++ +GT
Sbjct: 324 QWGFDDEANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGT-CSRIYE 382
Query: 358 KKV 360
++
Sbjct: 383 QEF 385
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 394 bits (1014), Expect = e-135
Identities = 81/364 (22%), Positives = 158/364 (43%), Gaps = 62/364 (17%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+++D G ++NDG IL+ + V HPA K++++IA++QD EVGDGTTSV +LA E L
Sbjct: 39 LIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQ 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGT----K 116
+ ++ + +HP +II+A+R+A + VN ++ +++ + K D+ + ++++ C T K
Sbjct: 99 VKPYVEEGLHPQIIIRAFRTATQLAVNKIK-EIAVTVKKEDKVEQRKLLEKCAMTALSSK 157
Query: 117 FIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
I + + +DAV + ++ + ++K+ GG +E+S ++ GV K
Sbjct: 158 LISQQKAFFAKMVVDAVMML-------DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKT 210
Query: 177 VTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236
++ ++ NP I
Sbjct: 211 FSYAGFEM-----------------------------------------QPKKYHNPMIA 229
Query: 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIF 296
LL+ LE K + + + ++ I+ E + I ++
Sbjct: 230 LLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDK--------LEKIHHSGAKVVL 281
Query: 297 TEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFE 356
++ I D+A + ++ RV + D R ACG +I L + +G +FE
Sbjct: 282 SKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFE 340
Query: 357 IKKV 360
++
Sbjct: 341 ETQI 344
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 394 bits (1015), Expect = e-135
Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 60/363 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
+++ ++NDG IL+ + V HPA K++++I+R QD EVGDGTTSV +LAGE++
Sbjct: 52 LIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKE 111
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSD---RSKLIEVIKACVGTKF 117
A+ FL + + +I+K YR A+ V + +++ + R L + + +K
Sbjct: 112 AKPFLEEGISSHLIMKGYRKAVSLAVEKIN-ELAVDITSEKSSGRELLERCARTAMSSKL 170
Query: 118 IGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV 177
I +D + +DAV ++ R ++D K ++KIPGG +E+S + GV K
Sbjct: 171 IHNNADFFVKMCVDAVLSL-----DRNDLDDKLI-GIKKIPGGAMEESLFINGVAFKKTF 224
Query: 178 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVL 237
++ + ++ NP+I+
Sbjct: 225 SYAGF-----------------------------------------EQQPKKFNNPKILS 243
Query: 238 LDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFT 297
L+ LE K + V + + ++ I+ E + + + + +++ +
Sbjct: 244 LNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEK--------LRQVEETGANIVLS 295
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEI 357
+ I DLA F NI RV D NR+ +A G +I + T +++ E +GT LFE
Sbjct: 296 KLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGT-CALFEE 354
Query: 358 KKV 360
++
Sbjct: 355 MQI 357
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 391 bits (1006), Expect = e-134
Identities = 90/364 (24%), Positives = 168/364 (46%), Gaps = 61/364 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+ D G + +TNDG IL+++ V HPA + ++E+++ QD E GDGTTSV+++AG +L+
Sbjct: 39 MIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDS 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
K L +HPT+I ++++ ALE + IL +S P++ SDR L+ + +K + +
Sbjct: 99 CTKLLQKGIHPTIISESFQKALEKGIEILT-DMSRPVELSDRETLLNSAATSLNSKVVSQ 157
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+S L +++DAV V ++ + +D++ K+ K GGTI+D ++ G++L + V +
Sbjct: 158 YSSLLSPMSVDAVMKV-IDPATATSVDLRDI-KIVKKLGGTIDDCELVEGLVLTQKVANS 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+ R+E +I L+
Sbjct: 216 GI---------------------------------------------TRVEKAKIGLIQF 230
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
L K + + + + + ++L+ E Y+ L I +++ +K
Sbjct: 231 CLSAPKTDMDNQIVVSDYVQMDRVLREERAYILNL--------VKQIKKTGCNVLLIQKS 282
Query: 301 I-----SDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLF 355
I SDLA HFL K I ++ + + D I + G V ++ + +G+
Sbjct: 283 ILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAE 342
Query: 356 EIKK 359
E+
Sbjct: 343 EVSL 346
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 392 bits (1009), Expect = e-133
Identities = 84/363 (23%), Positives = 163/363 (44%), Gaps = 56/363 (15%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
++++ +G I++TND +LRE+ + HPA K ++ Q ++GDGT V++LAGE+LNV
Sbjct: 54 IIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNV 113
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILET-KVSTPLDKSDRSKLIEVIKACVGTKFIG 119
+EK +S + II+ Y A + + L+ V DK+D+++L+++IK + +K G
Sbjct: 114 SEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMIKPVISSKKYG 173
Query: 120 KWSDLACNIALDAVQTV--TVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDV 177
D+ + +AV V +++G +V KI GG++ +S V++G++ N++
Sbjct: 174 SE-DILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREP 232
Query: 178 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVL 237
H K + ++ +
Sbjct: 233 -------------------------------------------EGHVKSLSEDKKHKVAV 249
Query: 238 LDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFT 297
C L+ E++ V + N E + EE+ ++ + +I + + I
Sbjct: 250 FTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAM--------MKEIADMGVECIVA 301
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEI 357
G+ +LA H+L + I ++ K + R+ R CGAT + R E++G +
Sbjct: 302 GAGVGELALHYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGL-VETVKT 360
Query: 358 KKV 360
++
Sbjct: 361 MEI 363
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 388 bits (999), Expect = e-132
Identities = 87/365 (23%), Positives = 169/365 (46%), Gaps = 61/365 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+ G I+++NDG+ IL+++ + HP + ++E++ QD E GDGTTSV++L G +L
Sbjct: 47 MIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGA 106
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
AE+ L+ +HPT+I +++SA + V+IL ++ + SDR +L+ + +K + +
Sbjct: 107 AERLLNKGIHPTIIADSFQSAAKRSVDILL-EMCHKVSLSDREQLVRAASTSLSSKIVSQ 165
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+S +A+D+V + + K +D+ ++ K GGTI+D+ ++ GV+L +
Sbjct: 166 YSSFLAPLAVDSVL--KISDENSKNVDLNDI-RLVKKVGGTIDDTEMIDGVVLTQTA--- 219
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
+ R E +I L+
Sbjct: 220 ----------------------------------------IKSAGGPTRKEKAKIGLIQF 239
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
+ K +++ N+ + + + KIL+ E Y+ + C I K +++ +K
Sbjct: 240 QISPPKPDTENNIIVNDYRQMDKILKEERAYLLNI--------CKKIKKAKCNVLLIQKS 291
Query: 301 I-----SDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLF 355
I +DLA HFL K NI ++ + + + +++ G + E E+ + + A L
Sbjct: 292 ILRDAVNDLALHFLSKLNIMVVKDIEREEIEFLSKGLGCKPIADIELFTEDRLDS-ADLV 350
Query: 356 EIKKV 360
E
Sbjct: 351 EEIDS 355
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 388 bits (998), Expect = e-132
Identities = 82/363 (22%), Positives = 163/363 (44%), Gaps = 51/363 (14%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D G I +T DG +L E+ +Q P + A QDE GDGTT+V+ L GE+L
Sbjct: 45 MLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQ 104
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILET-KVSTPLDKSDRSKLIEVIKACVGTKFIG 119
A +F+ + +HP +I + A ++ + L+ K+S +DR L++V ++ + TK
Sbjct: 105 AHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDA 164
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
+++ I DAV +V ++ ++ + ++ ++ + +D+ ++G++L+ H
Sbjct: 165 DLTEVLTPIVTDAVLSVYDAQADNLDLHMV---EIMQMQHLSPKDTTFIKGLVLDHGGRH 221
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
P M R++N +++L+ +LEY+K E + +
Sbjct: 222 PDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRD--------------------- 260
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCN--DIIALKPDLIFT 297
K+ E ++V+ ++ ++ + K +I
Sbjct: 261 -----------------------KLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIIN 297
Query: 298 EKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEI 357
+KGI ++ K NI A+RR ++ + R+ G N E+L + +G +GL
Sbjct: 298 QKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGF-SGLVYQ 356
Query: 358 KKV 360
+ +
Sbjct: 357 ETI 359
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 382 bits (983), Expect = e-130
Identities = 86/367 (23%), Positives = 168/367 (45%), Gaps = 67/367 (18%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+ G I +T DGN +L E+ +QHP + ++A QD+ GDGTTS +++ GE+L
Sbjct: 38 MLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQ 97
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A+ ++S+ +HP +I + + +A E + LE +V + DR LI+V + + TK +
Sbjct: 98 ADLYISEGLHPRIITEGFEAAKEKALQFLE-QVKVSKEM-DRETLIDVARTSLRTKVHAE 155
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
+D+ +D++ + + + ID+ ++ ++ + D+ ++RG++L+ HP
Sbjct: 156 LADVLTEAVVDSILAIKKQ---DEPIDLFMV-EIMEMKHKSETDTSLIRGLVLDHGARHP 211
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
M++R+E+ I+ + +LEY+K E + + +
Sbjct: 212 DMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEERE---------------------- 249
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPD------- 293
K+++ E +++E II LK
Sbjct: 250 ----------------------KLVKAERKFIEDR--------VKKIIELKKKVCGDSDK 279
Query: 294 --LIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTG 351
++ +KGI + L K I A+RR ++ + R+ ACG +N ++L + +
Sbjct: 280 GFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLACGGIALNSLDDLNPDCLLGH 339
Query: 352 AGLFEIK 358
AG++E
Sbjct: 340 AGVYEYT 346
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 379 bits (977), Expect = e-129
Identities = 80/361 (22%), Positives = 145/361 (40%), Gaps = 61/361 (16%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
M+++ + + +TND ILRE+ VQHPA K ++ + Q++EVGDGT V+V AG +L +
Sbjct: 39 MVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLEL 98
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILET-KVSTPLDKSDRSKLIEVIKACVGTKFIG 119
AE+ L + + +I+ Y A + IL + + D ++ ++ V +K G
Sbjct: 99 AEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSAKNLRDVDEVSSLLHTSVMSKQYG 158
Query: 120 KWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
LA + A ++ +SG +D +V KI G + S VL G++ K+
Sbjct: 159 NEVFLA-KLIAQACVSI-FPDSGHFNVD---NIRVCKILGSGVHSSSVLHGMVFKKETEG 213
Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
+++ +I +
Sbjct: 214 ----------------------------------------------DVTSVKDAKIAVYS 227
Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
C + E++ V I + E + EE ++ I +++ T
Sbjct: 228 CPFDGMITETKGTVLIKSAEELMNFSKGEENLMDAQ--------VKAIADTGANVVVTGG 279
Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
++D+A H+ K NI +R K D R+ + GAT + R E++G + +
Sbjct: 280 RVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATALPRLNPPVLEEMGH-CDSVYLSE 338
Query: 360 V 360
V
Sbjct: 339 V 339
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 364 bits (936), Expect = e-123
Identities = 81/365 (22%), Positives = 147/365 (40%), Gaps = 66/365 (18%)
Query: 1 MLMDPMGGIVM-TNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLN 59
+L M TNDG IL+ I + +PA K ++ I++ QD+EVGDGTTSV VL+ E+L
Sbjct: 45 LLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLR 104
Query: 60 VAEKFLS-DQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSD---RSKLIEVIKACVGT 115
AEK + ++HP II+ YR A ++ L K + R LI + K + +
Sbjct: 105 EAEKLIDQSKIHPQTIIEGYRLASAAALDALT-KAAVDNSHDKTMFREDLIHIAKTTLSS 163
Query: 116 KFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNK 175
K + + D +A +A+ + + +++ + ++ KI GG + DS + G +L K
Sbjct: 164 KILSQDKDHFAELATNAILRL------KGSTNLE-HIQIIKILGGKLSDSFLDEGFILAK 216
Query: 176 DVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRI 235
+ +RIEN +I++ + TL+ K +
Sbjct: 217 KFGNN-QPKRIENAKILIANTTLDTDKVKI------------------------------ 245
Query: 236 VLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLI 295
T ++ + A+ ++ + E E ++ I +
Sbjct: 246 -------------FGTKFKVDSTAKLAQLEKAEREKMKNK--------IAKISKFGINTF 284
Query: 296 FTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLF 355
+ I D + I +I R+A G +V+ +E + +G +
Sbjct: 285 INRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGE-CDVI 343
Query: 356 EIKKV 360
E +
Sbjct: 344 EEIML 348
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 357 bits (920), Expect = e-121
Identities = 77/364 (21%), Positives = 146/364 (40%), Gaps = 64/364 (17%)
Query: 1 MLMDPM--GGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEML 58
+L+ +++TNDG IL+ I V +PA K +++++R QD+EVGDGTTSV VLA E+L
Sbjct: 38 ILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELL 97
Query: 59 NVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKV--STPLDKSDRSKLIEVIKACVGTK 116
AE ++ ++HP II +R A + L + R L+ + + +K
Sbjct: 98 REAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSK 157
Query: 117 FIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
+ D +A++AV + + +++ V K GG++ DS + G +L+K
Sbjct: 158 LLTHHKDHFTKLAVEAVLRL------KGSGNLE-AIHVIKKLGGSLADSYLDEGFLLDKK 210
Query: 177 VTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIV 236
+ +RIEN +I++ + ++ K +
Sbjct: 211 IGVN-QPKRIENAKILIANTGMDTDKIKIF------------------------------ 239
Query: 237 LLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIF 296
+ V + + A+ +I E+E +++ I+ +
Sbjct: 240 -------------GSRVRVDSTAKVAEIEHAEKEKMKEK--------VERILKHGINCFI 278
Query: 297 TEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFE 356
+ I + + A + AI R+A G I + + +G+ L E
Sbjct: 279 NRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGS-CKLIE 337
Query: 357 IKKV 360
+
Sbjct: 338 EVMI 341
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 189 bits (483), Expect = 1e-59
Identities = 112/199 (56%), Positives = 134/199 (67%), Gaps = 52/199 (26%)
Query: 162 IEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSV 221
+EDSCVLRGVM+NKDVTHP+MRR I+NPRIVLLD +LEYKKGESQT++EI E D+
Sbjct: 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT--- 57
Query: 222 THPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVE 281
+ILQ+EEEY+ +L
Sbjct: 58 -----------------------------------------RILQMEEEYIHQL------ 70
Query: 282 KVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTE 341
C DII LKPD++ TEKGISDLAQH+L++AN+TAIRRVRK+DNNRIARACGA IV+R E
Sbjct: 71 --CEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPE 128
Query: 342 ELREEDVGTGAGLFEIKKV 360
ELRE+DVGTGAGL EIKK+
Sbjct: 129 ELREDDVGTGAGLLEIKKI 147
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 181 bits (461), Expect = 1e-56
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
Query: 221 VTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYV 280
H KM ++N +I L+D LE KK E + V+I + ++ L E +++
Sbjct: 10 KVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQM----- 64
Query: 281 EKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRT 340
I +++ +KGI D+AQH+L K I A+RRV+KSD ++A+A GA IV
Sbjct: 65 ---VEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDL 121
Query: 341 EELREEDVGTGAGLFEIKKV 360
++L +G A E +K+
Sbjct: 122 DDLTPSVLGE-AETVEERKI 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 1e-09
Identities = 52/401 (12%), Positives = 120/401 (29%), Gaps = 93/401 (23%)
Query: 4 DPMGGIVMTNDGNAILREITVQHPAGKS--MIEIARTQDEEVGDGTTSVIVLAGEMLNVA 61
D I+ + + I+ + + + ++ EE+ V E+L +
Sbjct: 40 DMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEM------VQKFVEEVLRIN 90
Query: 62 EKFLSDQMH-----PTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACV--- 113
KFL + P+++ + Y + + N + +V + S R + ++ +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVS-RLQPYLKLRQALLEL 147
Query: 114 ---------GTKFIGKWSDLACNIALDAVQTVTVEESGRKEI---DIKRYAKVEKIPGGT 161
G GK +ALD + V+ +I ++K E +
Sbjct: 148 RPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV---- 198
Query: 162 IEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSV 221
+E ML K+ +I+ D + K + I + R +
Sbjct: 199 LE--------MLQ------KLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELRRL 237
Query: 222 THPKMRRR-------IENPRIV---LLDC-TLEYKKGESQTNVEIVNEAEFTKILQLEEE 270
K ++N + L C L + + T+ T + L+
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHH 294
Query: 271 YVEKLEEEYVEKVCNDIIALKP-DLIFTEKGISDLAQHF---LLKANITAIRRVRKSDNN 326
L + V+ + + +P DL + ++ + + + +
Sbjct: 295 -SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 327 RIARACGATIVN-RTEELRE---------EDVGTGAGLFEI 357
++ +++ E R+ L +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Score = 48.3 bits (114), Expect = 3e-06
Identities = 52/361 (14%), Positives = 109/361 (30%), Gaps = 116/361 (32%)
Query: 9 IVMTNDGNAILREITVQHPAGKSMIEIAR--TQDEEVGDGTTSVIVLAGEMLNVAEKFLS 66
++ T + ++ S+ + T DE +L + L+ + L
Sbjct: 269 LLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKS-------LLL-KYLDCRPQDLP 319
Query: 67 DQM---HPTVI--IKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKW 121
++ +P + I ++ D + + + KL +I++ +
Sbjct: 320 REVLTTNPRRLSIIAE---SIRDGLATWDN-----WKHVNCDKLTTIIESSLN------- 364
Query: 122 SDLACNIALDAVQTVTVEESGRKEIDIKRY-------AKVEKIPGGTIE-------DSCV 167
L+ + ++ IP + S V
Sbjct: 365 -------VLE-------------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 168 LRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKK---GESQTNVEIVNESDWRRSVT-- 222
+ ++NK + + ++ + I + LE K E + IV+ + ++
Sbjct: 405 MV--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 223 -----------------HPKMRRRIENP---RIVLLDCT-LEYK---------KGESQTN 252
H K E R+V LD LE K S N
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 253 V---------EIV-NEAEFTKILQLEEEYVEKLEEEYVEKVCNDI--IALKPD--LIFTE 298
I N+ ++ +++ +++ K+EE + D+ IAL + IF E
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 299 K 299
Sbjct: 583 A 583
Score = 38.7 bits (89), Expect = 0.003
Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 29/148 (19%)
Query: 174 NKDVTHPKMRRRIENPRIVLLDC--TLEYKKGE-SQTNV-EIVNESDWRRSVTHPKMRRR 229
KD+ ++N DC + K S+ + I+ D
Sbjct: 18 YKDILSVFEDAFVDN-----FDCKDVQDMPKSILSKEEIDHIIMSKD------------A 60
Query: 230 IENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKIL-QLEEEY-----VEKLEEEYVEKV 283
+ L L ++ Q VE V + ++ ++ E + ++ E +++
Sbjct: 61 VSGTL-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 284 CNDIIALKPDLIFTEKGISDLAQHFLLK 311
ND + + L Q LL+
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQA-LLE 146
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 37.9 bits (89), Expect = 0.004
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 20/140 (14%)
Query: 12 TNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSD 67
TNDG +I +EI ++ P G ++ E+A+ D+ GDGTT+ VLA ++ + ++
Sbjct: 49 TNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAA 108
Query: 68 QMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACN 127
+P + + A+E + L K + ++ ++ I A G + IG
Sbjct: 109 GANPLGLKRGIEKAVEKVTETLL-KGAKEVETKEQIAATAAISA--GDQSIGDL------ 159
Query: 128 IALDAVQTV------TVEES 141
IA +A+ V TVEES
Sbjct: 160 IA-EAMDKVGNEGVITVEES 178
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 37.2 bits (87), Expect = 0.007
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 7 GGIVMTNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAE 62
G +T DG ++ +EI + G M+ E+A ++E GDGTT+ VLA ++
Sbjct: 45 GAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGL 104
Query: 63 KFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWS 122
K ++ M+P + + A +V ++ + P++ S + I A G FIG+
Sbjct: 105 KAVAAGMNPMDLKRGIDVATAKVVEAIK-SAARPVNDSSEVAQVGTISAN-GESFIGQQ- 161
Query: 123 DLACNIALDAVQTV------TVEES 141
IA +A+Q V TVEE+
Sbjct: 162 -----IA-EAMQRVGNEGVITVEEN 180
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 36.4 bits (85), Expect = 0.015
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 12 TNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSD 67
T DG ++ REI ++ G M+ E+A ++ GDGTT+ VLA ++ K ++
Sbjct: 49 TKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAA 108
Query: 68 QMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACN 127
M+P + + A+ V L+ +S P S + I A + +GK
Sbjct: 109 GMNPMDLKRGIDKAVTVAVEELK-ALSVPCSDSKAIAQVGTISAN-SDETVGKL------ 160
Query: 128 IALDAVQTV------TVEES 141
IA +A+ V TVE+
Sbjct: 161 IA-EAMDKVGKEGVITVEDG 179
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 36.0 bits (84), Expect = 0.016
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 12 TNDGNAILREITVQHP---AGKSMI-EIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSD 67
T DG + +E+ ++ G ++ E+A ++ GDGTT+ VLA ++ K ++
Sbjct: 49 TKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAA 108
Query: 68 QMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACN 127
+P + + A+E V ++ ++ P++ + + I A +GK
Sbjct: 109 GANPLALKRGIEKAVEAAVEKIK-ALAIPVEDRKAIEEVATISA--NDPEVGKL------ 159
Query: 128 IALDAVQTV------TVEES 141
IA DA++ V TVEES
Sbjct: 160 IA-DAMEKVGKEGIITVEES 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.020
Identities = 33/204 (16%), Positives = 67/204 (32%), Gaps = 61/204 (29%)
Query: 14 DGNAILREITVQHPAGK---------SM--IEIARTQD-EEVGDGTTSVIVLAG----E- 56
+ N T + G ++ +E A +D + G + AG E
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKG-LIPADATFAGHSLGEY 1767
Query: 57 --MLNVAEKF-LSDQMHPTVIIKAYR-----SALE---------DMVNILETKVSTPLDK 99
+ ++A+ + V + YR A+ M+ I +V+ +
Sbjct: 1768 AALASLADVMSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 100 SDRSKLIEVIKACVGTKFIGKWSDLACNIA---LDAVQTVTVEESGRKE-----IDIKRY 151
E ++ V + +GK + I ++ Q V +G ++ +
Sbjct: 1824 -------EALQYVV--ERVGKRTGWLVEIVNYNVENQQYVA---AGDLRALDTVTNVLNF 1871
Query: 152 AKVEKIPGGTIEDSCVLRGV--ML 173
K++KI ++ S L V L
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 35.4 bits (81), Expect = 0.035
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 49/142 (34%)
Query: 161 TIEDSCVL---RGVMLNKDVTHPKMRRRIE-----NPRIVLLDCTLEY-----KKGESQT 207
+IE + RG+ + V ++ R NP V + E ++ +T
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 208 N--VEIVNESDWRRSVTHPKMRRRIENPRIVL------LDCTLEYKKGESQTNVEIVNEA 259
VEIVN + +EN + V LD T+ ++N
Sbjct: 1838 GWLVEIVNYN--------------VENQQYVAAGDLRALD-TV----------TNVLNFI 1872
Query: 260 EFTKI--LQLEEEY-VEKLEEE 278
+ KI ++L++ +E++E
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEGH 1894
Score = 32.7 bits (74), Expect = 0.24
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 35/108 (32%)
Query: 1 ML-MDPMGGIVMTNDGNAILREITVQHPAGKS--MIEIA----RTQDEEVGDGTTSVIVL 53
M+ ++P G + + A L+ + V+ ++ ++EI Q V
Sbjct: 1809 MIAINP-GRVAASFSQEA-LQYV-VERVGKRTGWLVEIVNYNVENQ----------QYVA 1855
Query: 54 AGEM--LNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDK 99
AG++ L+ L+ IK + ++I+E + S L++
Sbjct: 1856 AGDLRALDTVTNVLN-------FIKLQK------IDIIELQKSLSLEE 1890
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural
genomics, structural genomics consortium, SGC; 1.70A
{Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Length = 295
Score = 32.4 bits (73), Expect = 0.19
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 221 VTHPKMRRRIENPRIVLLDCTL-----EYKKGESQTNVEIVNEAEFTKILQ------LEE 269
+ + + L+ TL YK + ++E E K+L+ L+
Sbjct: 223 TSKSFCSLQTPDGVHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQR 282
Query: 270 EYVEKLEE 277
+ V K +
Sbjct: 283 KLVPKHGD 290
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria,
actyltransferase; 2.00A {Mycobacterium marinum} PDB:
2vfc_A* 3ltw_A*
Length = 280
Score = 31.5 bits (71), Expect = 0.32
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 221 VTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQ 266
VT ++ R L+ L + + + + A L
Sbjct: 205 VTGLMAATVADDARWNLMGRNLAIHRRGGTEKILLEDAAAVVDTLG 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.41
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 24/50 (48%)
Query: 268 EEEYVEKLEEEYVEKVCNDIIALK---PDLIFTEKGISDLAQHFLLKANI 314
E++ ++KL+ +LK D S A +KA +
Sbjct: 18 EKQALKKLQA-----------SLKLYADD--------S--APALAIKATM 46
>2q8p_A Iron-regulated surface determinant E; helical backbone metal
receptor superfamily, metal transport; HET: HEM; 1.95A
{Staphylococcus aureus subsp} PDB: 2q8q_A*
Length = 260
Score = 31.2 bits (71), Expect = 0.46
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 287 IIALKPDLIFTEKGISDLAQHFLLKANITAI 317
+ LKP + + I D Q F + N+
Sbjct: 56 VKKLKPTHVLSVSTIKDEMQPFYKQLNMKGY 86
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A
{Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A*
1gx3_A
Length = 278
Score = 29.6 bits (66), Expect = 1.5
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 221 VTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQ 266
VT + ++ R L L + + ++ + A+ +
Sbjct: 208 VTGLTVAVVTDDARYNLRGRNLAVHRSGATEHIRFDSAAQVLDAIV 253
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding
protein, MOLY binding protein, metal transport; 1.50A
{Haemophilus influenzae} PDB: 3psa_A
Length = 326
Score = 29.3 bits (66), Expect = 2.0
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 287 IIALKPDLIFTEKGISDLAQHFLLKANITAI 317
++ALKPD++F + NI +
Sbjct: 80 LLALKPDVVFVTNYAPSEMIKQISDVNIPVV 110
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA
processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus
fulgidus}
Length = 244
Score = 27.3 bits (60), Expect = 7.1
Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 205 SQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEY------KKGESQTNVEIVNE 258
+ ++E++ + RR + P +LLD + + + E + +IV
Sbjct: 33 LEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIV-- 90
Query: 259 AEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDL 294
+L L + + E YV + +II + +
Sbjct: 91 --HQCLLLLLDSPLRDF-EVYVHTLNGEIIWVNRET 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.371
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,706,966
Number of extensions: 364191
Number of successful extensions: 1060
Number of sequences better than 10.0: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 81
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)