RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2832
(362 letters)
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
gamma chain [TaxId: 10090]}
Length = 168
Score = 118 bits (296), Expect = 9e-33
Identities = 100/143 (69%), Positives = 121/143 (84%), Gaps = 8/143 (5%)
Query: 218 RRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEE 277
+ VTHP+MRR I+NPRIVLLD +LEYKKGESQT++EI E +FT+ILQ+EEEY+ +L
Sbjct: 11 NKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQL-- 68
Query: 278 EYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
C DII LKPD++ TEKGISDLAQH+L++AN+TAIRRVRK+DNNRIARACGA IV
Sbjct: 69 ------CEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIV 122
Query: 338 NRTEELREEDVGTGAGLFEIKKV 360
+R EELRE+DVGTGAGL EIKK+
Sbjct: 123 SRPEELREDDVGTGAGLLEIKKI 145
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Length = 152
Score = 115 bits (288), Expect = 9e-32
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 218 RRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEE 277
+ HP M +++ +I LLD LE KK E TN+ I + + K L EE + ++
Sbjct: 5 DKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREM-- 62
Query: 278 EYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
+ I ++ +++ T+KGI D+AQH+L +A I A+RRV+KSD +++A+A GA+IV
Sbjct: 63 ------VDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIV 116
Query: 338 NRTEELREEDVGTGAGLFEIKKV 360
+ +E+ D+GT A E KV
Sbjct: 117 STIDEISSSDLGT-AERVEQVKV 138
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma
acidophilum, alpha chain [TaxId: 2303]}
Length = 152
Score = 113 bits (283), Expect = 5e-31
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 218 RRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEE 277
+ H KM ++N +I L+D LE KK E + V+I + ++ L E +++
Sbjct: 7 DKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQM-- 64
Query: 278 EYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
I +++ +KGI D+AQH+L K I A+RRV+KSD ++A+A GA IV
Sbjct: 65 ------VEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIV 118
Query: 338 NRTEELREEDVGTGAGLFEIKKV 360
++L +G A E +K+
Sbjct: 119 TDLDDLTPSVLGE-AETVEERKI 140
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Length = 153
Score = 112 bits (282), Expect = 7e-31
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 9/143 (6%)
Query: 218 RRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEE 277
+ V HP+M +R+EN +I L++ LE KK E+ + I + + L+ EE+ ++ +
Sbjct: 6 DKEVVHPRMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDM-- 63
Query: 278 EYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
+ I +++F +KGI DLAQH+L K I A+RRV+KSD ++A+A GA IV
Sbjct: 64 ------VDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIV 117
Query: 338 NRTEELREEDVGTGAGLFEIKKV 360
++L ED+G A + E +K+
Sbjct: 118 TNVKDLTPEDLGY-AEVVEERKL 139
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 89.5 bits (222), Expect = 8e-23
Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 101 DRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG 160
+++ L+++ + + +K D I+ +AV++V G+ +D +V K GG
Sbjct: 4 EKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDN-IQVVKKQGG 62
Query: 161 TIEDSCVLRGVMLN-----KDVTHPKMRRRIENPRIVLLDCTLE 199
I+D+ ++ + + +M R I + + ++ LE
Sbjct: 63 AIDDTQLINKAVSILVRGETEHVVDEMERSITDS-LHVVASALE 105
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 107
Score = 88.4 bits (219), Expect = 2e-22
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 98 DKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKI 157
D D L+++ + K +L +A++AV+ V ++ G+ +D+ K EK
Sbjct: 2 DPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLD-NIKFEKK 60
Query: 158 PGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKK 202
G +E+S +++ V + I+ L D K
Sbjct: 61 AGEGVEESELVKAVTILI---RGGTEHVIDEVERALEDAVKVVKD 102
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 105
Score = 82.7 bits (204), Expect = 3e-20
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 100 SDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPG 159
+D + L ++ + K G +D ++ + AV V G+ +D KV+K G
Sbjct: 1 TDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTA-NIKVDKKNG 59
Query: 160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGE 204
G++ D+ + V + + L D +
Sbjct: 60 GSVNDTQFISAVSILI---RGGTDHVVSEVERALNDAIRVVAITK 101
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 81.7 bits (201), Expect = 2e-18
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TNDG IL+E+ V+HPA K M+E+++TQD VGDGTT+ +++AG +L
Sbjct: 30 MLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQ 89
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
A+ ++ +HPTVI + YR A E+ +++ ++ST + + A + K
Sbjct: 90 AQGLINQNVHPTVISEGYRMASEEAKRVID-EISTKIAYAAGGGATAAEIAFRLRSYAQK 148
Query: 121 WSDL------ACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGV--- 171
A++ + E +G IDI + E G V G
Sbjct: 149 IGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIED 208
Query: 172 MLNKDVTHP 180
M+ V P
Sbjct: 209 MVKNGVIEP 217
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 76.3 bits (187), Expect = 1e-16
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 10/196 (5%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G I+++NDG IL+E+ V+HP K ++E+++ QD VGDGTT+ +VL+GE+L
Sbjct: 34 MLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQ 93
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGT-KFIG 119
AE L +HPTVI YR A+ + I++ + E+ +G
Sbjct: 94 AETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSFLWGGGAVEAELAMRLAKYANSVG 153
Query: 120 KWSDLACNI---ALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKD 176
LA AL+ + E +G I+ E + GV L+ +
Sbjct: 154 GREQLAIEAFAKALEIIPRTLAENAGIDPIN------TLIKLKADDEKGRISVGVDLDNN 207
Query: 177 VTHPKMRRRIENPRIV 192
+ + +P V
Sbjct: 208 GVGDMKAKGVVDPLRV 223
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
{Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
79679]}
Length = 258
Score = 73.3 bits (179), Expect = 2e-15
Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 7/189 (3%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
ML+D +G IV+TND IL +I +QHPA K M+E+A+TQD+E GDGTT+ +V+AGE+L
Sbjct: 43 MLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRK 102
Query: 61 AEKFLSDQMHPTVIIKAYRSALEDMVNIL-ETKVSTPLDKSDRSKLIEVIKACVGTKFIG 119
AE+ L +HP++I K Y A E IL E + L ++ I+ K +G
Sbjct: 103 AEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRAVLPAGGAPEIELAIRLDEYAKQVG 162
Query: 120 KWSDLACNIA---LDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGV---ML 173
LA L + E +G +++ E G V G ML
Sbjct: 163 GKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADML 222
Query: 174 NKDVTHPKM 182
K + P
Sbjct: 223 EKGIIEPLR 231
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 60.6 bits (146), Expect = 3e-11
Identities = 37/194 (19%), Positives = 68/194 (35%), Gaps = 8/194 (4%)
Query: 1 MLMDPMGGIVMTNDGNAILREITVQHP----AGKSMIEIARTQDEEVGDGTTSVIVLAGE 56
++ G +T DG ++ +EI + + + E+A ++E GDGTT+ VLA
Sbjct: 38 VIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQA 97
Query: 57 MLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTK 116
++ K ++ M+P + + A +V ++ + + L++ K G
Sbjct: 98 IVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIK-SAARGIVVGGGVALVQGAKVLEGLS 156
Query: 117 FIGKWSDLACNI---ALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVML 173
D I AL+A E +G + + G M
Sbjct: 157 GANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMF 216
Query: 174 NKDVTHPKMRRRIE 187
V P R
Sbjct: 217 KFGVIDPAKVVRTA 230
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
{Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
Length = 180
Score = 58.3 bits (140), Expect = 9e-11
Identities = 21/142 (14%), Positives = 46/142 (32%)
Query: 24 VQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALE 83
+ + + E+A+ D+ GDGTT+ VLA ++ + ++ +P + + A+E
Sbjct: 3 YEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVE 62
Query: 84 DMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGR 143
+ L + + +AL+A SG
Sbjct: 63 KVTETLLKGAKIVAGGGVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGL 122
Query: 144 KEIDIKRYAKVEKIPGGTIEDS 165
+ + + G +
Sbjct: 123 EPGVVAEKVRNLPAGHGLNAQT 144
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 27.1 bits (60), Expect = 3.0
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 263 KILQLEEEYVEKLEEEYVEKVCNDIIAL 290
+ +Q+ E+ EE + D+I +
Sbjct: 56 EFIQVIEDIKRDFEES-ILLESEDVIRI 82
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
transferase 2, TUTase 2, RET2 {Trypanosoma brucei
[TaxId: 5691]}
Length = 259
Score = 26.4 bits (58), Expect = 5.7
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 74 IIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAV 133
++K + E + T +S D+ R+ L++V CVG + +A + D V
Sbjct: 118 VVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGDNDV---EYIAEKMGRDNV 174
Query: 134 QTVTVEES 141
+ + V+ +
Sbjct: 175 EGIRVDRT 182
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
mexicana [TaxId: 5665]}
Length = 561
Score = 26.4 bits (57), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 210 EIVNESDWRRSVTHPKMRRRIENPRIV 236
+ VN ++ R+V H +R R P IV
Sbjct: 92 QRVNSTE-NRAVLHVALRNRSNRPIIV 117
>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189
{Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 25.6 bits (55), Expect = 9.4
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 287 IIALKPDLIFTEKGISDLAQHFLLKANITAI 317
+I L+PD++F A+ K I +
Sbjct: 80 LITLQPDVVFITYVDRKTAKDIQEKTGIPVV 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.371
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,371,074
Number of extensions: 66588
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 36
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)