Query psy2833
Match_columns 216
No_of_seqs 188 out of 1944
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:04:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361|consensus 100.0 2.6E-38 5.7E-43 284.7 7.8 175 30-212 325-507 (543)
2 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.8E-34 1E-38 270.5 19.1 196 7-214 297-500 (517)
3 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 3.5E-34 7.6E-39 269.5 17.9 194 8-213 267-468 (484)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 8.7E-34 1.9E-38 269.6 18.9 182 24-213 322-511 (531)
5 PTZ00212 T-complex protein 1 s 100.0 8.9E-34 1.9E-38 269.6 17.9 196 7-214 309-512 (533)
6 TIGR02344 chap_CCT_gamma T-com 100.0 1.1E-33 2.4E-38 268.2 17.9 196 7-214 303-508 (525)
7 TIGR02341 chap_CCT_beta T-comp 100.0 1.3E-33 2.9E-38 267.6 17.9 196 6-213 297-500 (519)
8 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3.2E-33 6.9E-38 265.0 18.6 195 8-214 303-506 (522)
9 cd03341 TCP1_theta TCP-1 (CTT 100.0 5.7E-33 1.2E-37 260.6 19.2 196 6-213 251-457 (472)
10 cd03335 TCP1_alpha TCP-1 (CTT 100.0 4.4E-33 9.6E-38 264.3 18.5 197 7-213 295-511 (527)
11 TIGR02342 chap_CCT_delta T-com 100.0 4.4E-33 9.4E-38 263.9 18.2 196 7-214 299-503 (517)
12 cd03337 TCP1_gamma TCP-1 (CTT 100.0 4.8E-33 1.1E-37 261.5 18.1 196 7-214 262-467 (480)
13 cd03343 cpn60 cpn60 chaperonin 100.0 7.2E-33 1.6E-37 262.1 18.5 196 7-214 300-503 (517)
14 TIGR02339 thermosome_arch ther 100.0 7.3E-33 1.6E-37 262.3 18.5 195 7-213 303-505 (519)
15 cd03339 TCP1_epsilon TCP-1 (CT 100.0 9.9E-33 2.1E-37 261.9 19.0 197 7-214 308-514 (526)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 7.4E-33 1.6E-37 262.0 18.1 195 7-213 298-501 (515)
17 TIGR02343 chap_CCT_epsi T-comp 100.0 2.1E-32 4.6E-37 260.1 18.6 196 8-214 313-518 (532)
18 TIGR02340 chap_CCT_alpha T-com 100.0 4.7E-32 1E-36 257.9 18.9 198 6-213 298-515 (536)
19 TIGR02345 chap_CCT_eta T-compl 100.0 3.8E-32 8.2E-37 257.8 17.7 195 8-214 304-506 (522)
20 TIGR02346 chap_CCT_theta T-com 100.0 7.9E-32 1.7E-36 256.2 18.3 197 6-214 299-506 (531)
21 cd00309 chaperonin_type_I_II c 100.0 8.5E-32 1.9E-36 251.5 17.7 196 7-214 249-452 (464)
22 KOG0363|consensus 100.0 1.6E-32 3.5E-37 246.1 10.9 187 18-212 309-503 (527)
23 KOG0364|consensus 100.0 2E-32 4.4E-37 249.3 7.2 177 30-214 322-507 (527)
24 KOG0359|consensus 100.0 2.5E-31 5.4E-36 241.9 13.2 185 17-211 306-498 (520)
25 KOG0357|consensus 100.0 7E-31 1.5E-35 233.0 12.2 194 7-207 169-375 (400)
26 PRK12849 groEL chaperonin GroE 100.0 9.3E-29 2E-33 235.8 16.7 189 8-213 271-508 (542)
27 cd03344 GroEL GroEL_like type 100.0 1.4E-28 3E-33 233.5 17.0 192 7-214 268-507 (520)
28 PRK00013 groEL chaperonin GroE 100.0 1.1E-28 2.4E-33 235.3 16.0 192 8-214 271-510 (542)
29 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.2E-28 2.6E-33 229.4 15.1 184 22-214 277-470 (485)
30 PRK12852 groEL chaperonin GroE 100.0 3E-28 6.4E-33 232.5 17.0 191 7-213 271-510 (545)
31 PRK12850 groEL chaperonin GroE 100.0 4.6E-28 1E-32 231.1 16.1 191 8-214 272-510 (544)
32 PRK12851 groEL chaperonin GroE 100.0 6.4E-28 1.4E-32 230.0 16.5 192 7-214 271-510 (541)
33 PTZ00114 Heat shock protein 60 100.0 1.1E-27 2.3E-32 229.1 17.1 191 8-213 283-525 (555)
34 TIGR02348 GroEL chaperonin Gro 100.0 9.7E-28 2.1E-32 228.0 16.5 191 8-214 270-508 (524)
35 PRK14104 chaperonin GroEL; Pro 99.9 2.2E-27 4.8E-32 226.5 16.2 193 6-213 270-510 (546)
36 KOG0358|consensus 99.9 1.1E-27 2.4E-32 215.9 11.0 196 7-214 315-527 (534)
37 COG0459 GroL Chaperonin GroEL 99.9 2.7E-27 5.8E-32 224.7 13.2 177 27-213 309-499 (524)
38 CHL00093 groEL chaperonin GroE 99.9 6.7E-27 1.5E-31 222.5 14.9 192 7-214 271-511 (529)
39 KOG0362|consensus 99.9 1.8E-26 3.9E-31 212.9 13.0 190 8-210 304-503 (537)
40 KOG0360|consensus 99.9 1.5E-27 3.3E-32 219.0 5.7 176 29-211 324-519 (545)
41 PLN03167 Chaperonin-60 beta su 99.9 5.2E-25 1.1E-29 212.2 10.3 196 6-213 324-566 (600)
42 cd03334 Fab1_TCP TCP-1 like do 99.7 8.6E-17 1.9E-21 141.0 7.6 97 7-107 151-256 (261)
43 cd03333 chaperonin_like chaper 99.6 2.2E-15 4.8E-20 126.9 9.5 94 7-104 113-209 (209)
44 KOG0357|consensus 99.2 5.5E-12 1.2E-16 113.0 2.1 88 100-197 234-327 (400)
45 KOG0358|consensus 98.9 7.1E-10 1.5E-14 101.2 1.3 83 110-202 385-471 (534)
46 cd03342 TCP1_zeta TCP-1 (CTT o 98.8 9E-10 2E-14 104.2 1.0 81 110-201 334-418 (484)
47 TIGR02341 chap_CCT_beta T-comp 98.8 9.8E-10 2.1E-14 104.8 1.1 81 110-201 366-450 (519)
48 TIGR02347 chap_CCT_zeta T-comp 98.8 1.2E-09 2.6E-14 104.6 1.1 83 108-201 375-461 (531)
49 cd03336 TCP1_beta TCP-1 (CTT o 98.8 1.3E-09 2.8E-14 103.9 1.3 81 110-201 365-449 (517)
50 CHL00093 groEL chaperonin GroE 98.8 8.1E-09 1.7E-13 98.9 6.5 83 107-201 377-464 (529)
51 cd03337 TCP1_gamma TCP-1 (CTT 98.8 1.2E-09 2.7E-14 103.2 0.8 74 127-201 338-415 (480)
52 PTZ00212 T-complex protein 1 s 98.8 1.6E-09 3.5E-14 103.6 1.1 81 110-201 377-461 (533)
53 cd03339 TCP1_epsilon TCP-1 (CT 98.8 4.5E-09 9.8E-14 100.3 3.8 83 108-201 376-462 (526)
54 TIGR02344 chap_CCT_gamma T-com 98.8 1.9E-09 4E-14 102.9 1.1 81 110-201 372-456 (525)
55 KOG0361|consensus 98.8 1.6E-09 3.5E-14 99.0 0.5 98 89-196 351-454 (543)
56 TIGR02342 chap_CCT_delta T-com 98.8 2.2E-09 4.7E-14 102.4 1.2 83 108-201 366-452 (517)
57 TIGR02343 chap_CCT_epsi T-comp 98.7 2.2E-09 4.8E-14 102.7 1.0 78 110-197 382-463 (532)
58 cd03335 TCP1_alpha TCP-1 (CTT 98.7 2.3E-09 4.9E-14 102.4 1.0 84 107-201 366-453 (527)
59 TIGR02340 chap_CCT_alpha T-com 98.7 3.9E-09 8.4E-14 101.1 1.2 84 107-201 370-457 (536)
60 cd03343 cpn60 cpn60 chaperonin 98.7 3.8E-09 8.3E-14 100.5 0.9 83 108-201 366-452 (517)
61 TIGR02345 chap_CCT_eta T-compl 98.7 3.9E-09 8.4E-14 100.8 1.0 81 110-201 371-455 (522)
62 KOG0363|consensus 98.7 1E-08 2.3E-13 93.3 3.6 88 106-203 366-457 (527)
63 COG0459 GroL Chaperonin GroEL 98.7 3.3E-09 7.1E-14 101.5 0.3 101 91-202 342-451 (524)
64 PTZ00114 Heat shock protein 60 98.7 1.5E-08 3.3E-13 97.5 4.6 83 104-197 385-475 (555)
65 cd03338 TCP1_delta TCP-1 (CTT 98.7 4.2E-09 9.2E-14 100.2 0.7 84 107-201 364-451 (515)
66 TIGR02339 thermosome_arch ther 98.7 3.8E-09 8.3E-14 100.6 0.3 73 127-200 378-454 (519)
67 TIGR02348 GroEL chaperonin Gro 98.7 1.5E-08 3.2E-13 97.0 4.0 78 108-197 377-458 (524)
68 TIGR02346 chap_CCT_theta T-com 98.6 6.8E-09 1.5E-13 99.4 0.7 80 108-197 367-450 (531)
69 PRK12849 groEL chaperonin GroE 98.6 9.3E-09 2E-13 98.8 1.5 82 107-201 377-462 (542)
70 cd03341 TCP1_theta TCP-1 (CTT 98.6 8.4E-09 1.8E-13 97.3 0.8 81 110-201 321-405 (472)
71 PRK12851 groEL chaperonin GroE 98.6 1.6E-08 3.5E-13 97.1 2.3 79 107-197 378-460 (541)
72 cd03340 TCP1_eta TCP-1 (CTT or 98.6 8E-09 1.7E-13 98.5 0.0 71 127-197 377-451 (522)
73 cd03344 GroEL GroEL_like type 98.6 1.7E-08 3.7E-13 96.5 2.2 79 107-197 375-457 (520)
74 PRK12850 groEL chaperonin GroE 98.6 3E-08 6.4E-13 95.3 3.5 79 107-197 378-460 (544)
75 PRK00013 groEL chaperonin GroE 98.6 1.8E-08 4E-13 96.7 1.4 78 108-197 378-459 (542)
76 PRK12852 groEL chaperonin GroE 98.5 1.8E-08 4E-13 96.7 1.0 84 107-202 378-465 (545)
77 cd00309 chaperonin_type_I_II c 98.5 1.4E-08 3.1E-13 95.2 0.2 72 127-198 324-399 (464)
78 PRK14104 chaperonin GroEL; Pro 98.5 1E-07 2.3E-12 91.7 4.2 79 107-197 378-460 (546)
79 PLN03167 Chaperonin-60 beta su 98.4 1.6E-07 3.5E-12 91.3 3.3 81 107-198 432-517 (600)
80 KOG0362|consensus 98.4 1.1E-07 2.3E-12 89.1 1.1 84 110-203 372-459 (537)
81 KOG0364|consensus 98.3 1.1E-06 2.4E-11 81.6 5.5 97 91-197 351-453 (527)
82 PF00118 Cpn60_TCP1: TCP-1/cpn 98.1 5.2E-07 1.1E-11 84.3 -0.9 81 107-197 333-417 (485)
83 KOG0360|consensus 98.0 1.6E-06 3.5E-11 81.1 0.0 70 117-186 374-445 (545)
84 KOG0230|consensus 97.9 4.1E-06 9E-11 86.8 0.9 86 27-112 481-574 (1598)
85 KOG0356|consensus 97.6 0.00012 2.6E-09 69.8 6.6 121 70-205 389-514 (550)
86 KOG0359|consensus 97.1 0.00012 2.5E-09 68.3 -0.3 96 91-196 347-448 (520)
87 KOG0356|consensus 93.4 0.16 3.6E-06 48.8 5.8 85 107-202 392-480 (550)
88 cd03334 Fab1_TCP TCP-1 like do 72.7 4 8.7E-05 35.7 3.4 33 110-152 225-257 (261)
89 cd03333 chaperonin_like chaper 59.2 32 0.00069 28.5 6.2 32 106-147 177-208 (209)
90 KOG2663|consensus 38.2 29 0.00062 31.0 2.7 28 71-99 120-147 (309)
91 KOG2495|consensus 26.7 1.2E+02 0.0026 29.3 4.9 97 70-172 169-281 (491)
92 PF07526 POX: Associated with 22.6 1.3E+02 0.0028 24.1 3.8 41 82-122 84-124 (140)
93 COG3962 Acetolactate synthase 21.5 98 0.0021 30.2 3.3 38 88-126 216-253 (617)
No 1
>KOG0361|consensus
Probab=100.00 E-value=2.6e-38 Score=284.70 Aligned_cols=175 Identities=21% Similarity=0.314 Sum_probs=164.4
Q ss_pred hcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCe
Q psy2833 30 QAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106 (216)
Q Consensus 30 ~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~ 106 (216)
+||++++++..++.+ |.|..||++++|+++|.+|++|+..++||++|||+.+++++|+|||+|||+++++.++++..
T Consensus 325 acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 325 ACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 799999999999886 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEE
Q psy2833 107 LVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTL 181 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i 181 (216)
+|+|||++||+||++||+|+ +.+....+|++||++||+.|++|+ |.++++++. +|++. |..|..||||
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~Na---GfDa~~iln--kLR~r--HA~G~~w~Gv 477 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNA---GFDATNILN--KLRQR--HAQGEKWYGV 477 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhc---CCcHHHHHH--HHHHH--hhcCCceeee
Confidence 99999999999999999998 999999999999999999999999 889999885 45554 3458999999
Q ss_pred eeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833 182 GLHAGGPGLIPGGAEVFFGSVLGVRGALSLV 212 (216)
Q Consensus 182 ~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 212 (216)
|..++.++|+ -+.+|||+++|+-+++.++-
T Consensus 478 di~~e~i~dn-~~~~VwEP~~VK~Nai~aat 507 (543)
T KOG0361|consen 478 DINTEGIADN-FEKFVWEPSIVKINAITAAT 507 (543)
T ss_pred eecccchhhH-HHhhccChHHHHHHHHHHHH
Confidence 9999999987 57899999999999988763
No 2
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.8e-34 Score=270.45 Aligned_cols=196 Identities=21% Similarity=0.286 Sum_probs=173.4
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL 83 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~ 83 (216)
.++++++.-.+++ ++....+|||+++++++++++ |+|+.|++..+|+++|++|++|+++++|||+|||+|+++
T Consensus 297 ~~I~av~~v~~~~----L~rIa~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~ 372 (517)
T cd03336 297 AGIMAIEHADFDG----VERLALVTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQI 372 (517)
T ss_pred CCcEEEecCCHHH----HHHHHHHhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHH
Confidence 4677777766655 444556799999999999886 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833 84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV 158 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~ 158 (216)
++|+||+++||++++++++++|++|||||++|+++|.+|++++ +.+.++++|++||+++|++|++|+ |.++.
T Consensus 373 l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~Na---G~d~~ 449 (517)
T cd03336 373 LDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNA---GYDSA 449 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCCHH
Confidence 9999999999999999999999999999999999999999985 799999999999999999999999 77888
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
|+.. .|++.+ ..+..++|+|+.+|.+.|+ ...||||+..++.+++++++.+
T Consensus 450 ~~l~--~l~~~h--~~~~~~~Gid~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e~ 500 (517)
T cd03336 450 ELVA--QLRAAH--YNGNTTAGLDMRKGTVGDM-KELGITESFKVKRQVLLSASEA 500 (517)
T ss_pred HHHH--HHHHHH--HcCCCceeeecCCCCccch-hhcCceecHHHHHHHHHHHHHH
Confidence 7765 344332 3456689999999999987 5899999999999998887653
No 3
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.5e-34 Score=269.54 Aligned_cols=194 Identities=22% Similarity=0.273 Sum_probs=170.6
Q ss_pred cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL 84 (216)
Q Consensus 8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l 84 (216)
.+++++...+++ ++....+|||+++++++++++ |+|+.|+++.+|+++|+||++|++++.|||+|||+|++++
T Consensus 267 ~I~av~~~~~~~----l~~ia~~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l 342 (484)
T cd03342 267 GILALRRAKRRN----MERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTI 342 (484)
T ss_pred CCeEEEeCCHHH----HHHHHHHhCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHH
Confidence 478888644443 444555799999999999986 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833 85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE 159 (216)
Q Consensus 85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E 159 (216)
+|+||+++||++++++++++|++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+ |.++.|
T Consensus 343 ~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~ 419 (484)
T cd03342 343 TQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENS---GLDVQE 419 (484)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHH
Confidence 999999999999999999999999999999999999999985 899999999999999999999999 778887
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
... .|+. .|..+..++|+|+.+|.+.|+ .+.||||+..++.+++++|+-
T Consensus 420 ~l~--~l~~--~h~~~~~~~Gid~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e 468 (484)
T cd03342 420 TLV--KLQD--EYAEGGQVGGVDLDTGEPMDP-ESEGIWDNYSVKRQILHSATV 468 (484)
T ss_pred HHH--HHHH--HHHccCCceeeeCCCCcccch-hhcCcEEcHHHHHHHHHHHHH
Confidence 765 2332 222345689999999999987 589999999999999988764
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.7e-34 Score=269.64 Aligned_cols=182 Identities=21% Similarity=0.259 Sum_probs=163.4
Q ss_pred hhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHH
Q psy2833 24 VQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARN 100 (216)
Q Consensus 24 ~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~ 100 (216)
++...++|||+++++++++++ |+|+.|+++.+|+++|++|++|++++.|||+|||+|+++++|+||+++||++++++
T Consensus 322 le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~ 401 (531)
T TIGR02347 322 MERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDGLRAVKN 401 (531)
T ss_pred HHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444455799999999999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCC
Q psy2833 101 IMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLG 175 (216)
Q Consensus 101 ~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g 175 (216)
++++|++|||||++|+++|.+|++++ +.+.++++|++||+.+|++|++|+ |.++.|... .|+. .+.++
T Consensus 402 ~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~Na---G~d~~~vl~--~l~~--~~~~~ 474 (531)
T TIGR02347 402 AIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENS---GLDAQDTLV--KLED--EHDEG 474 (531)
T ss_pred HhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHH--HHHcc
Confidence 99999999999999999999999985 899999999999999999999999 778887765 2332 23345
Q ss_pred ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 176 RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 176 ~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
...+|+|+.+|.+.|+ .+.||||+..++.+++++++-
T Consensus 475 ~~~~Gid~~~g~~~d~-~~~gV~Dp~~vk~~al~~A~e 511 (531)
T TIGR02347 475 GEVVGVDLETGEPIDP-EIKGIWDNYRVKKQLIQSATV 511 (531)
T ss_pred CCceeeeccCCCccch-hhccCEEcHHHHHHHHHHHHH
Confidence 5689999999999887 579999999999999888764
No 5
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=8.9e-34 Score=269.58 Aligned_cols=196 Identities=21% Similarity=0.293 Sum_probs=171.0
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL 83 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~ 83 (216)
+.++++++-++.+ ++....+|||+++++++++++ |+|+.|+++.+|+++|++|++|+.+++|||+|||+|+++
T Consensus 309 ~~I~avr~v~~~~----l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~ 384 (533)
T PTZ00212 309 AGIMAIEHADFDG----MERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHI 384 (533)
T ss_pred CCCEEEecCCHHH----HHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhH
Confidence 4577777433333 334555799999999999876 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833 84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV 158 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~ 158 (216)
++|+||+++||++++++++++|++|||||++|+++|.+|++++ +.+.++++|++||+++|++|++|+ |.++.
T Consensus 385 l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~Na---G~d~~ 461 (533)
T PTZ00212 385 LDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNG---GYDSA 461 (533)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCCHH
Confidence 9999999999999999999999999999999999999999885 899999999999999999999999 77888
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
|+.. .|+..+ .++..++|+|+.+|.+.|+ ...||||+..++.+++++|+.+
T Consensus 462 ~vl~--~l~~~h--~~~~~~~G~d~~~g~i~d~-~~~gI~dp~~vk~~al~~A~e~ 512 (533)
T PTZ00212 462 ELVS--KLRAEH--YKGNKTAGIDMEKGTVGDM-KELGITESYKVKLSQLCSATEA 512 (533)
T ss_pred HHHH--HHHHHH--HccCCccceeccCCcccch-hhccceecHHHHHHHHHHHHHH
Confidence 8765 233322 2345689999999999987 5899999999999999888653
No 6
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-33 Score=268.22 Aligned_cols=196 Identities=34% Similarity=0.448 Sum_probs=170.8
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRGASKD 82 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~ 82 (216)
.+++++++..+++. ++...+|||+++++++++++ |+ |+.|+++++|+++|++|++|+++++|||+|||+|++
T Consensus 303 ~~I~av~~v~~~~L----erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~ 378 (525)
T TIGR02344 303 ANISAIRRVRKTDN----NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKD 378 (525)
T ss_pred CCceEEecCCHHHH----HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHH
Confidence 56777774444443 33455799999999999986 87 999999999999999999999999999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833 83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA 157 (216)
Q Consensus 83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga 157 (216)
+++|+||+++||+++++++++++++|||||++|+++|.+|++++ ..++++++|++||+.+|++|++|+ |.++
T Consensus 379 ~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~Na---G~d~ 455 (525)
T TIGR02344 379 VLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNC---GVNV 455 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence 99999999999999999999999999999999999999999985 789999999999999999999999 7788
Q ss_pred hHHHHHHHHHHhhhhcCC-ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 158 VEMAVSHVSSCFQDNLLG-RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 158 ~E~~~s~~L~~~a~~~~g-~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
.|... .|+..+ .++ ..++|+|+.+|.+.|+ ...||||+..++.+++++++.+
T Consensus 456 ~~~l~--~l~~~h--~~~~~~~~Gid~~~g~~~d~-~~~gV~dp~~vk~~~l~~A~e~ 508 (525)
T TIGR02344 456 IRTLT--ELRAKH--AQEGNCTWGIDGETGKIVDM-KEKGIWEPLAVKLQTYKTAIES 508 (525)
T ss_pred HHHHH--HHHHHH--HccCCCeEeEECCCCccccc-hhccceecHHHHHHHHHHHHHH
Confidence 88765 333332 223 5689999999999987 5899999999999998887643
No 7
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-33 Score=267.65 Aligned_cols=196 Identities=21% Similarity=0.268 Sum_probs=172.2
Q ss_pred CCcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKD 82 (216)
Q Consensus 6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~ 82 (216)
...+++++.-.+++ ++....+|||+++++++++++ |+|+.|+++.+|+++|++|++|++++.|||+|||+|++
T Consensus 297 ~~~I~~v~~~~~~~----l~~ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~ 372 (519)
T TIGR02341 297 DAGVMAIEHADFEG----IERLALVTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQ 372 (519)
T ss_pred HCCcEEEecCCHHH----HHHHHHHhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHH
Confidence 35677777666443 444455799999999999886 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833 83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA 157 (216)
Q Consensus 83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga 157 (216)
+++|+||+++||+++++++++|+++|||||++|+++|.+|++++ +.+.++++|++||+++|++|++|+ |.++
T Consensus 373 ~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~Na---G~d~ 449 (519)
T TIGR02341 373 ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNA---GFDS 449 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence 99999999999999999999999999999999999999999885 799999999999999999999999 7788
Q ss_pred hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
.|+.. .|+..+ ..+..++|+|..+|.+.|+ .+.||||+..++.+++++|+-
T Consensus 450 ~~~l~--~l~~~h--~~~~~~~Gid~~~g~i~d~-~~~gI~dp~~vk~~~l~~A~e 500 (519)
T TIGR02341 450 AELVA--QLRAAH--YNGNHTMGLDMEEGEIADM-RKLGIIESYKVKRAVVSSAAE 500 (519)
T ss_pred HHHHH--HHHHHH--HcCCCccceecCCCcccch-hhccceEcHHHHHHHHHHHHH
Confidence 88764 343332 2345689999999999987 479999999999999998864
No 8
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.2e-33 Score=264.96 Aligned_cols=195 Identities=20% Similarity=0.298 Sum_probs=169.4
Q ss_pred cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL 84 (216)
Q Consensus 8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l 84 (216)
.++++.+-.+++ +++...+|||+++++++++.+ |+|+.|+++++|+++|++|++|+.++.|||+|||+|++++
T Consensus 303 ~I~~~~~v~~~~----l~rIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l 378 (522)
T cd03340 303 DIFCAGRVPEED----LKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFI 378 (522)
T ss_pred CcEEEEeCCHHH----HHHHHHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHH
Confidence 455665444433 444455799999999999986 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833 85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE 159 (216)
Q Consensus 85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E 159 (216)
+|+||+++||++++++++++|++|||||++|++++.+|++++ +.+.++++|++||+.+|++|++|+ |.++.|
T Consensus 379 ~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~Na---G~d~~~ 455 (522)
T cd03340 379 EEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNA---GFDATD 455 (522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHH
Confidence 999999999999999999999999999999999999999985 789999999999999999999999 778877
Q ss_pred HHHHHHHHHhhhhcCCc-eEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 160 MAVSHVSSCFQDNLLGR-VVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 160 ~~~s~~L~~~a~~~~g~-~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
... .|+..+ .++. .++|+|+.+|.+.|+ .+.||||+..++.+++++++.+
T Consensus 456 ~l~--~l~~~h--~~~~~~~~Gid~~~g~i~d~-~~~gV~dp~~vk~~~i~~A~e~ 506 (522)
T cd03340 456 ILN--KLRQKH--AQGGGKWYGVDINNEGIADN-FEAFVWEPSLVKINALTAATEA 506 (522)
T ss_pred HHH--HHHHHH--HccCCCeeeeeCCCCcccch-hhcCceEcHHHHHHHHHHHHHH
Confidence 664 333332 2344 589999999999987 6899999999999999888753
No 9
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.7e-33 Score=260.55 Aligned_cols=196 Identities=19% Similarity=0.252 Sum_probs=172.3
Q ss_pred CCcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCC-CceEEEEEeCCCh
Q psy2833 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQN-PKACTILLRGASK 81 (216)
Q Consensus 6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~ 81 (216)
..++++++...+++ ++.....||++++++++++++ |+|+.|+++++|+++|++|++|++ ++.|||+|||+|+
T Consensus 251 ~~~I~av~~~~~~~----Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~ 326 (472)
T cd03341 251 KYGIMVIKINSKFE----LRRLCRTVGATPLPRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQ 326 (472)
T ss_pred HCCeEEEEeCCHHH----HHHHHHHhCCEEecccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCH
Confidence 35788887766555 455556799999999999876 999999999999999999999987 8999999999999
Q ss_pred hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833 82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG 156 (216)
Q Consensus 82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg 156 (216)
++++|.||+++||++++++++++|++|||||++|++++.+|++++ ..+.++++|++||+.+|++|++|+ |.+
T Consensus 327 ~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~Na---G~d 403 (472)
T cd03341 327 NILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENA---GLD 403 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHC---CCC
Confidence 999999999999999999999999999999999999999999885 889999999999999999999999 778
Q ss_pred hhHHHHHHHHHHhhhhcCCceEEEEeeccC--CCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAG--GPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~--~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
+.|+.. .|+..+ .++..++|+|+.+| .+.|+ .+.||||+..++.+++++++.
T Consensus 404 ~~~~~~--~l~~~h--~~~~~~~Gid~~~g~~~~~d~-~~~gI~dp~~vk~~~l~~A~e 457 (472)
T cd03341 404 ATEVLS--ELYAAH--QKGNKSAGVDIESGDEGTKDA-KEAGIFDHLATKKWAIKLATE 457 (472)
T ss_pred HHHHHH--HHHHHH--HccCCeeeeeccCCCCCccCh-hhccceecHHHHHHHHHHHHH
Confidence 877654 343322 23455899999999 99987 689999999999999988764
No 10
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.4e-33 Score=264.34 Aligned_cols=197 Identities=22% Similarity=0.219 Sum_probs=169.0
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccC---------cceeceEEEEEECCeEEEEEeecCCCceEEEEEe
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLN---------HWLCSSQDACLLGDEYFCYITECQNPKACTILLR 77 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~---------~g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllr 77 (216)
.|++++++..+++ ++....+|||++++++.+++ -|+|+.|+++++|+++|++|++|+++++|||+||
T Consensus 295 ~~I~~v~~v~~~~----lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllr 370 (527)
T cd03335 295 AGAMAVRRVKKED----LRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILR 370 (527)
T ss_pred CCcEEEEeCCHHH----HHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEe
Confidence 5778888555544 33345589999999997652 2999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCccc
Q psy2833 78 GASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLV 152 (216)
Q Consensus 78 G~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v 152 (216)
|+|+++++|+||+++||++++++++++|++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+
T Consensus 371 G~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~Na-- 448 (527)
T cd03335 371 GANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNA-- 448 (527)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence 9999999999999999999999999999999999999999999999885 789999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhhhhcC------CceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 153 PGGGAVEMAVSHVSSCFQDNLL------GRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 153 ~Ggga~E~~~s~~L~~~a~~~~------g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
|.++.|... .|+..+.... +..++|+|..+|.+.|+ .+.||||+..++.+++++|+.
T Consensus 449 -G~d~~~~~~--~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~-~~~gV~dp~~~k~~~i~~A~e 511 (527)
T cd03335 449 -AKDATELVA--KLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDN-LEAGVLEPTVSKIKSLKFATE 511 (527)
T ss_pred -CCCHHHHHH--HHHHHHHhcCCccccccCceEeEECCCCcccch-hhccceecHHHHHHHHHHHHH
Confidence 778887654 3333322111 24579999999999987 589999999999999888764
No 11
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.4e-33 Score=263.94 Aligned_cols=196 Identities=22% Similarity=0.257 Sum_probs=170.5
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCC-ceEEEEEeCCChh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNP-KACTILLRGASKD 82 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-~~~TIllrG~t~~ 82 (216)
.+++++++-.+++ ++.....|||+++++++++++ |+|+.|+++++|+++|++|++|+++ +.|||+|||||++
T Consensus 299 ~~I~av~~v~~~~----LerIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~ 374 (517)
T TIGR02342 299 MKIMVVKDIEREE----VEFICKTIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKL 374 (517)
T ss_pred CCceEEecCCHHH----HHHHHHHHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHH
Confidence 6777887333333 333445799999999999886 9999999999999999999999884 8999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833 83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA 157 (216)
Q Consensus 83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga 157 (216)
+++|+||+++||+++++++++++++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+ |.++
T Consensus 375 ~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~Na---G~d~ 451 (517)
T TIGR02342 375 VIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENA---GLNP 451 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHc---CCCH
Confidence 99999999999999999999999999999999999999999985 789999999999999999999999 7788
Q ss_pred hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
.|+.. .|+..+ .++..++|+|+.+|.+.|+ .+.||||++.++.+++++|+.+
T Consensus 452 ~~~l~--~l~~~h--~~~~~~~Gid~~~g~i~d~-~~~gI~dp~~vk~~ai~~A~e~ 503 (517)
T TIGR02342 452 IDVVT--ELRNRH--ANGEKYAGISVRKGGITDM-LEEEVLQPLLVTTSAVTLASET 503 (517)
T ss_pred HHHHH--HHHHHH--HcCCCccceecCCCCccch-hhccceEcHHHHHHHHHHHHHH
Confidence 88765 333332 2456689999999999987 5899999999999999988753
No 12
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.8e-33 Score=261.52 Aligned_cols=196 Identities=35% Similarity=0.450 Sum_probs=170.0
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ce-eceEEEEEECCeEEEEEeecCCCceEEEEEeCCChh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WL-CSSQDACLLGDEYFCYITECQNPKACTILLRGASKD 82 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~-c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~ 82 (216)
.+++++++-.+++ +++...+|||+++++++++++ |+ |+.++++++|+++|+||++|+++++|||+|||+|++
T Consensus 262 ~~I~~v~~v~~~~----L~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~ 337 (480)
T cd03337 262 AGITALRRVRKTD----NNRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKD 337 (480)
T ss_pred CCcEEEEeCCHHH----HHHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHH
Confidence 4677887533333 344455799999999999986 88 788899999999999999999999999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833 83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA 157 (216)
Q Consensus 83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga 157 (216)
+++|+||+++||++++++++++|++|||||++|+++|.+|++++ +.++++++|++||+.+|++|++|+ |.++
T Consensus 338 ~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~Na---G~d~ 414 (480)
T cd03337 338 VLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNC---GANV 414 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCH
Confidence 99999999999999999999999999999999999999999876 799999999999999999999999 7788
Q ss_pred hHHHHHHHHHHhhhhcCC-ceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 158 VEMAVSHVSSCFQDNLLG-RVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 158 ~E~~~s~~L~~~a~~~~g-~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
.|... .|+.. |.++ ..++|+|..+|.+.|+ .+.||||+..++.+++++++..
T Consensus 415 ~~~l~--~l~~~--h~~~~~~~~Gid~~~g~i~d~-~~~gV~dp~~vk~~~l~~A~e~ 467 (480)
T cd03337 415 IRTLT--ELRAK--HAQGENSTWGIDGETGDIVDM-KELGIWDPLAVKAQTYKTAIEA 467 (480)
T ss_pred HHHHH--HHHHH--HHccCCCeECeeccCCCcccc-hhccCeEcHHHHHHHHHHHHHH
Confidence 88765 33332 2233 5689999999999987 5799999999999999888653
No 13
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.2e-33 Score=262.08 Aligned_cols=196 Identities=24% Similarity=0.280 Sum_probs=169.4
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL 83 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~ 83 (216)
+.++++++-.++ .+++...+|||+++++++++++ |+|+.|+++++|+++|++|++|++++.|||+|||||+.+
T Consensus 300 ~gI~~v~~v~~~----~l~~Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~ 375 (517)
T cd03343 300 AGILAVRRVKKS----DMEKLARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHV 375 (517)
T ss_pred CCcEEEEeCCHH----HHHHHHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHH
Confidence 456677643333 3344455799999999999976 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833 84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV 158 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~ 158 (216)
++|+||+++||++++++++++|++|||||++|+++|..|++++ ..+.++++|++||+.+|++|++|+ |.++.
T Consensus 376 l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~Na---G~d~~ 452 (517)
T cd03343 376 VDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENA---GLDPI 452 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHc---CCCHH
Confidence 9999999999999999999999999999999999999999885 789999999999999999999999 77887
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
|... .|+.. |..+..++|+|+.+|.+.|+ ...||||+..++.+++++++-+
T Consensus 453 ~~~~--~l~~~--h~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e~ 503 (517)
T cd03343 453 DTLV--ELRAA--HEKGNKNAGLDVYTGEVVDM-LEKGVIEPLRVKKQAIKSATEA 503 (517)
T ss_pred HHHH--HHHHH--HHccCCceeeecCCCCccch-hhcCceecHHHHHHHHHHHHHH
Confidence 7664 23322 22345689999999999887 6899999999999999887643
No 14
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=7.3e-33 Score=262.33 Aligned_cols=195 Identities=26% Similarity=0.311 Sum_probs=168.4
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL 83 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~ 83 (216)
+.++++++-.+ ..++....+|||+++++++++.+ |+|+.|+++++|+++|++|++|.++.+|||+|||||+.+
T Consensus 303 ~gI~~v~~v~~----~~L~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~ 378 (519)
T TIGR02339 303 AGILAVRRVKK----SDIEKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHV 378 (519)
T ss_pred CCCEEEecCCH----HHHHHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHH
Confidence 45666663332 33444455799999999999876 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833 84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV 158 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~ 158 (216)
++|+||+++||++++++++++|++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+ |.++.
T Consensus 379 l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d~~ 455 (519)
T TIGR02339 379 VDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENA---GLDPI 455 (519)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CCCHH
Confidence 9999999999999999999999999999999999999999885 789999999999999999999999 77888
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
++.. .|+.. |..+..++|+|+.+|.+.|+ .+.||||+..++.++++.|+.
T Consensus 456 ~~l~--~l~~~--h~~~~~~~Gid~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~e 505 (519)
T TIGR02339 456 DALV--ELRAK--HEKGNKNAGINVFTGEIEDM-LELGVIEPLRVKEQAIKSATE 505 (519)
T ss_pred HHHH--HHHHH--HHccCCceeEEcCCCCccch-hhccceEcHHHHHHHHHHHHH
Confidence 7765 23322 22345689999999999987 589999999999998888764
No 15
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.9e-33 Score=261.91 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=169.4
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeCCCh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRGASK 81 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~ 81 (216)
..+++++.-.+++ +++...+|||+++++++++.+ |+|+.|+++++|+ ++|+||++|+++++|||+|||+|+
T Consensus 308 ~~I~av~~v~~~~----LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~ 383 (526)
T cd03339 308 NGLPAVRWVGGVE----IELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNK 383 (526)
T ss_pred CCCEEEEeCCHHH----HHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCH
Confidence 3456666643333 555556799999999999986 9999999999996 689999999999999999999999
Q ss_pred hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833 82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG 156 (216)
Q Consensus 82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg 156 (216)
++++|+||+++||++++++++++|++|||||++|+++|..|++++ ..+.++++|++||+++|++|++|+ |.+
T Consensus 384 ~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d 460 (526)
T cd03339 384 MIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENS---GLN 460 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCC
Confidence 999999999999999999999999999999999999999999985 789999999999999999999999 778
Q ss_pred hhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
+.|+.. .|+..+.. .+..++|+|+.+|.+.|+ .+.||||++.++.+++++|+.+
T Consensus 461 ~~~~l~--~l~~~h~~-~~~~~~Gid~~~g~~~d~-~~~gV~dp~~vk~~~l~~A~e~ 514 (526)
T cd03339 461 PIETLS--EVKARQVK-EKNPHLGIDCLGRGTNDM-KEQKVFETLISKKQQILLATQV 514 (526)
T ss_pred HHHHHH--HHHHHHHh-cCCCeEeeecCCCccCch-hhcCceecHHHHHHHHHHHHHH
Confidence 888765 23322211 235589999999999987 6899999999999999888653
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-33 Score=262.00 Aligned_cols=195 Identities=23% Similarity=0.268 Sum_probs=170.2
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCC-CceEEEEEeCCChh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQN-PKACTILLRGASKD 82 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~ 82 (216)
.+++++++..+++ ++....+|||+++++++++++ |+|+.|+++++|+++|++|++|++ +++|||+|||+|++
T Consensus 298 ~~I~av~~~~~~~----LerIa~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~ 373 (515)
T cd03338 298 LKIMVVKDIEREE----IEFICKTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKL 373 (515)
T ss_pred CCceEEecCCHHH----HHHHHHHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHH
Confidence 5677777333333 444555799999999999886 999999999999999999999987 69999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833 83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA 157 (216)
Q Consensus 83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga 157 (216)
+++|+||+++||++++++++++|++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+ |.++
T Consensus 374 ~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~Na---G~d~ 450 (515)
T cd03338 374 VLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENA---GLNP 450 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence 99999999999999999999999999999999999999999985 789999999999999999999999 7788
Q ss_pred hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
.|+.. .|+..+ ..+..++|+|+.+|.+.|+ .+.||||++.++.+++++|+.
T Consensus 451 ~~~~~--~l~~~h--~~~~~~~G~d~~~g~~~d~-~~~gI~dp~~vk~~~l~~A~~ 501 (515)
T cd03338 451 ISIVT--ELRNRH--AQGEKNAGINVRKGAITNI-LEENVVQPLLVSTSAITLATE 501 (515)
T ss_pred HHHHH--HHHHHH--HccCCccceeccCCCccch-hhcCceecHHHHHHHHHHHHH
Confidence 88765 343332 2345689999999999987 589999999999998888764
No 17
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-32 Score=260.13 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=168.5
Q ss_pred cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeCCChh
Q psy2833 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRGASKD 82 (216)
Q Consensus 8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG~t~~ 82 (216)
.+++++.-.++ .++....+|||+++++++++.+ |+|+.|+++++|+ ++|++|++|+++++|||+|||+|++
T Consensus 313 ~i~~v~~~~~~----~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~ 388 (532)
T TIGR02343 313 DLPAVRWVGGH----ELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKM 388 (532)
T ss_pred CcEEEEcCCHH----HHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHH
Confidence 45666633333 3555666799999999999986 9999999999998 4899999999999999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCCh
Q psy2833 83 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGA 157 (216)
Q Consensus 83 ~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga 157 (216)
+++|+||+++||+++++++++++++|||||++|+++|.+|++++ ..+.++++|++||+++|++|++|+ |.++
T Consensus 389 ~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~Na---G~d~ 465 (532)
T TIGR02343 389 IIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENS---GLDP 465 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
Confidence 99999999999999999999999999999999999999999985 789999999999999999999999 7788
Q ss_pred hHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 158 VEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 158 ~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
.|... .|+..++. .+..++|+|+.++.+.|+ ...||||++.++.+++++|+.+
T Consensus 466 ~~~l~--~l~~~h~~-~~~~~~Gid~~~g~i~d~-~~~gV~Dp~~vk~~al~~A~e~ 518 (532)
T TIGR02343 466 IGTLS--DLKSLQMK-EKNPHLGVDCLGDGTNDM-KEQGVFETLIGKKQQIQLATQL 518 (532)
T ss_pred HHHHH--HHHHHHHh-cCCCccCeeCCCCccccc-hhccCeecHHHHHHHHHHHHHH
Confidence 77664 23322211 224579999999999887 5799999999999999988753
No 18
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.7e-32 Score=257.88 Aligned_cols=198 Identities=22% Similarity=0.215 Sum_probs=168.2
Q ss_pred CCcEEEEecCcccccccchhhhhhhcCceeeeeecccC---------cceeceEEEEEECCeEEEEEeecCCCceEEEEE
Q psy2833 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLN---------HWLCSSQDACLLGDEYFCYITECQNPKACTILL 76 (216)
Q Consensus 6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~---------~g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIll 76 (216)
..|++++++-.+++ ++....+|||++++++.+++ -|+|+.|+++++|+++|++|++|+++++|||+|
T Consensus 298 k~~I~~i~rv~~~~----LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIli 373 (536)
T TIGR02340 298 EAGAMGVRRCKKED----LKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIIL 373 (536)
T ss_pred HCCcEEEecCCHHH----HHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEE
Confidence 35677777544444 44445579999999997652 299999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcc
Q psy2833 77 RGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKL 151 (216)
Q Consensus 77 rG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~ 151 (216)
||+|+.+++|+||+++||++++++++++|++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+
T Consensus 374 rG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~Na- 452 (536)
T TIGR02340 374 RGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNA- 452 (536)
T ss_pred eCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHC-
Confidence 99999999999999999999999999999999999999999999999875 789999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHhhhhcC------CceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhh
Q psy2833 152 VPGGGAVEMAVSHVSSCFQDNLL------GRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 152 v~Ggga~E~~~s~~L~~~a~~~~------g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
|.++.|+.. .|+.++.... +..++|+|+.++.+.|+ ...||||+..++.++++.|+.
T Consensus 453 --G~d~~~~l~--~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~-~~~gI~Dp~~~k~~~l~~A~e 515 (536)
T TIGR02340 453 --ALDSTELVA--KLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDN-KEAGVLEPAVSKVKSLKFATE 515 (536)
T ss_pred --CCCHHHHHH--HHHHHHHccCcccccccCceEeEEccCCccccc-hhccceecHHHHHHHHHHHHH
Confidence 778887764 3443332111 23479999999999987 589999999999998887764
No 19
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-32 Score=257.81 Aligned_cols=195 Identities=22% Similarity=0.314 Sum_probs=168.6
Q ss_pred cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhH
Q psy2833 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLL 84 (216)
Q Consensus 8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l 84 (216)
.++++.+-.+++ +++...+||++++++++++.+ |+|+.|+++++++++|++|++|+++++|||+|||+|++++
T Consensus 304 ~I~~~~~v~~~d----l~ria~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l 379 (522)
T TIGR02345 304 NIFCAGRVSDED----LKRVVKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFI 379 (522)
T ss_pred CcEEEecCCHHH----HHHHHHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHH
Confidence 345554433333 444455899999999999986 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhH
Q psy2833 85 NETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVE 159 (216)
Q Consensus 85 ~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E 159 (216)
+|+||+++||+++++++++++++|||||++|++++.+|++++ ..+.++++|++||+++|++|++|+ |.++.|
T Consensus 380 ~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~Na---G~d~~~ 456 (522)
T TIGR02345 380 EEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENA---GFDSIE 456 (522)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH
Confidence 999999999999999999999999999999999999999885 789999999999999999999999 778877
Q ss_pred HHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 160 MAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 160 ~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
+.. .|+.. |..+..++|+|+.++.+.|+ ...||||+..++.+++++++.+
T Consensus 457 vl~--~l~~~--h~~~~~~~G~d~~~~~i~d~-~~~gI~dp~~vk~~~l~~A~e~ 506 (522)
T TIGR02345 457 ILN--KLRSR--HAKGGKWYGVDINTEDIGDN-FENFVWEPLLVKKNALKAAFEA 506 (522)
T ss_pred HHH--HHHHH--HHcCCCccceeCCCCcccch-hhcCceEcHHHHHHHHHHHHHH
Confidence 664 33332 22345679999999999887 6899999999999999888754
No 20
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.98 E-value=7.9e-32 Score=256.20 Aligned_cols=197 Identities=16% Similarity=0.192 Sum_probs=170.2
Q ss_pred CCcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecC-CCceEEEEEeCCCh
Q psy2833 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQ-NPKACTILLRGASK 81 (216)
Q Consensus 6 ~~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~-~~~~~TIllrG~t~ 81 (216)
..++++++....+ .++...++|||+++++++++++ |+|+.|+++++|+++|++|++|. ++++|||+|||||+
T Consensus 299 ~~~I~av~~~~~~----~l~~Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~ 374 (531)
T TIGR02346 299 KYNIMVLKIPSKF----ELRRLCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTK 374 (531)
T ss_pred HCCcEEEecCCHH----HHHHHHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCH
Confidence 4667888755554 3444566899999999999876 99999999999999999999988 58999999999999
Q ss_pred hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833 82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG 156 (216)
Q Consensus 82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg 156 (216)
++++|.||+++||+++++++++++++|||||++|+++|.+|++++ ..+.++++|++||+.+|++|++|+ |.+
T Consensus 375 ~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d 451 (531)
T TIGR02346 375 NLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENA---GLN 451 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhC---CCC
Confidence 999999999999999999999999999999999999999999985 789999999999999999999999 778
Q ss_pred hhHHHHHHHHHHhhhhcCCceEEEEeeccCC--CCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG--PGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~--~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
+.++.. .|+.. |..+..++|+|+.++. +.|+ ...||||++.++.+++++++.+
T Consensus 452 ~~~~~~--~l~~~--h~~~~~~~Gid~~~~~~~i~d~-~~~gI~dp~~vk~~~l~~A~e~ 506 (531)
T TIGR02346 452 PNEVIP--KLYAA--HKKGNTSSGIDIEAESDGVKDA-SEAGIYDNLATKKWAIKLATEA 506 (531)
T ss_pred HHHHHH--HHHHH--HHccCCccceeeeCCCccccCh-hhcCceEcHHHHHHHHHHHHHH
Confidence 877664 23222 2234558999999998 5777 5899999999999999888643
No 21
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.98 E-value=8.5e-32 Score=251.48 Aligned_cols=196 Identities=24% Similarity=0.269 Sum_probs=170.7
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL 83 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~ 83 (216)
.+++|+++..+++ ++.....||++++++++++++ |+|+.|++.++|+++|++|++|+.++.|||+|||+|+.+
T Consensus 249 ~~I~~v~~~~~~~----L~~Ia~~tGa~ii~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~ 324 (464)
T cd00309 249 LGIMAVRRVRKED----LERIAKATGATIVSRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVE 324 (464)
T ss_pred CCeEEEEeCCHHH----HHHHHHHhCCEEecccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHH
Confidence 5688887744333 333455799999999999876 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833 84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV 158 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~ 158 (216)
++|+||+++||++++++++++|++|||||++|+++|.+|++++ ..++++++|++||+.+|++|++|+ |.+..
T Consensus 325 l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~d~~ 401 (464)
T cd00309 325 LDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENA---GLDPI 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHc---CCCHH
Confidence 9999999999999999999999999999999999999999886 889999999999999999999999 77877
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
|+.. .|+.. +.++..++|+|..++.+.|+ ...||||+..++.+++++++-+
T Consensus 402 ~~~~--~l~~~--~~~~~~~~g~d~~~~~~~d~-~~~gI~dp~~vk~~~l~~A~e~ 452 (464)
T cd00309 402 EVVT--KLRAK--HAEGGGNAGGDVETGEIVDM-KEAGIIDPLKVKRQALKSATEA 452 (464)
T ss_pred HHHH--HHHHH--hhccCCCeeEECCCCcEeeh-hhccCeecHHHHHHHHHHHHHH
Confidence 7654 23332 23455679999999999987 6899999999999998887643
No 22
>KOG0363|consensus
Probab=99.98 E-value=1.6e-32 Score=246.15 Aligned_cols=187 Identities=21% Similarity=0.281 Sum_probs=172.8
Q ss_pred cccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchh
Q psy2833 18 RDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDA 94 (216)
Q Consensus 18 r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Da 94 (216)
++.+.-+++-.+.||+.|+|++++++. |+|+.+++..||+++++.|++|+-..+|||+|||+|+++|||.||++|||
T Consensus 309 HADFdGiERLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDA 388 (527)
T KOG0363|consen 309 HADFDGIERLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDA 388 (527)
T ss_pred cccchhHHHHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHH
Confidence 345555666677899999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHh
Q psy2833 95 LHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCF 169 (216)
Q Consensus 95 l~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~ 169 (216)
|||+....++++++.|||+.||.++..+.+++ +...++.+|+.||..+|.+|++|+ |+++.|+.... .
T Consensus 389 LcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNa---G~dsaelva~L----r 461 (527)
T KOG0363|consen 389 LCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNA---GYDSAELVAQL----R 461 (527)
T ss_pred HHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccC---CCCHHHHHHHH----H
Confidence 99999999999999999999999999999998 899999999999999999999999 88999987643 4
Q ss_pred hhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhh
Q psy2833 170 QDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLV 212 (216)
Q Consensus 170 a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 212 (216)
|.|.+|+..+|+|...|++.|| .+.||.|...||.+-..|+-
T Consensus 462 a~h~~g~~t~Gld~~~G~i~dm-~~~Gi~es~~vK~~vv~sas 503 (527)
T KOG0363|consen 462 AEHYNGRTTMGLDVRNGEIGDM-RELGIVESLKVKQAVVSSAS 503 (527)
T ss_pred HHhhcCCcccccccccCchhhH-HHhhhHHHHHHHHHHHhhhH
Confidence 6778999999999999999999 58999999999998877763
No 23
>KOG0364|consensus
Probab=99.97 E-value=2e-32 Score=249.29 Aligned_cols=177 Identities=34% Similarity=0.470 Sum_probs=161.3
Q ss_pred hcCceeeeeecccCc---c-eeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCC
Q psy2833 30 QAGKYIDSSIVTLNH---W-LCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEP 105 (216)
Q Consensus 30 ~~G~~i~~sl~~~~~---g-~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~ 105 (216)
+||++++++.+++.+ | .|++|+.+++||++|+||..|++|++|||++|||++++++|+||+++||+.|.++.+.+|
T Consensus 322 acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~P 401 (527)
T KOG0364|consen 322 ACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINP 401 (527)
T ss_pred hcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCC
Confidence 599999999999987 4 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEE
Q psy2833 106 KLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVT 180 (216)
Q Consensus 106 ~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~ 180 (216)
+++|||||+||++|+.|+..+ +.++.++++++||+++|++|++|. |..... ....|+.. +..|...++
T Consensus 402 klvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqnc---Gan~Ir--~lTalr~k--h~~G~~~~g 474 (527)
T KOG0364|consen 402 KLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNC---GANPIR--ALTALRAK--HKEGQRVWG 474 (527)
T ss_pred cccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhc---CccHHH--HHHHHHHH--hcCcceeec
Confidence 999999999999999999976 899999999999999999999999 554444 44445544 678888999
Q ss_pred EeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 181 LGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 181 i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
+|..+|...|+ ..-|+|++--++.|.+++++-+
T Consensus 475 i~g~tg~iVDm-~~~~iwep~~vK~Q~~ktaves 507 (527)
T KOG0364|consen 475 IDGETGVIVDM-VELGIWEPEAVKLQTGKTAVES 507 (527)
T ss_pred ccCceeeEeee-eeccccchhhhhhhhhhHHHHH
Confidence 99999999887 5789999999999999988743
No 24
>KOG0359|consensus
Probab=99.97 E-value=2.5e-31 Score=241.89 Aligned_cols=185 Identities=21% Similarity=0.280 Sum_probs=164.6
Q ss_pred ccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhch
Q psy2833 17 KRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQD 93 (216)
Q Consensus 17 ~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~D 93 (216)
+|+.+|+|++-.++||+..+++++++++ |||++|++.++|+++|+|+++|++|++||||++|||++.+.+++.+++|
T Consensus 306 RRAKRRNmERL~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdaird 385 (520)
T KOG0359|consen 306 RRAKRRNMERLVLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRD 385 (520)
T ss_pred HHHhhhhHHHHHHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhh
Confidence 4566677777777999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH
Q psy2833 94 ALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC 168 (216)
Q Consensus 94 al~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~ 168 (216)
++..+++.++|+.++||+|++|.+++.+|+... +....+++|++||.+||++|+.|+ |.+.+|...+. .+
T Consensus 386 glrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~ns---g~D~qe~l~~l--~~ 460 (520)
T KOG0359|consen 386 GLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNS---GLDEQETLVSL--KK 460 (520)
T ss_pred HHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhc---CCchHHHHHHH--HH
Confidence 999999999999999999999999999999765 888999999999999999999999 88999988642 22
Q ss_pred hhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhh
Q psy2833 169 FQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSL 211 (216)
Q Consensus 169 ~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ 211 (216)
... .+ ..|+|++.|+|. -|...||||+..++-+.+-|.
T Consensus 461 e~~--~~--~~g~dl~~g~~~-~~~~~gi~Dny~v~~~~l~s~ 498 (520)
T KOG0359|consen 461 EHE--VT--LRGLDLFRGEEC-DPSRKGIYDNYSVKKQLLRSE 498 (520)
T ss_pred hhh--hh--hcccccccCCcc-chhhccccchHHHHHHHhhhh
Confidence 221 22 349999999996 567889999998887766553
No 25
>KOG0357|consensus
Probab=99.97 E-value=7e-31 Score=233.05 Aligned_cols=194 Identities=23% Similarity=0.299 Sum_probs=167.8
Q ss_pred CcEEEEecC---cccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECC--eEEEEEeecCCCceEEEEEeC
Q psy2833 7 APVLVLSSN---TKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGD--EYFCYITECQNPKACTILLRG 78 (216)
Q Consensus 7 ~~~~v~~~~---~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~--~~~~~~~~~~~~~~~TIllrG 78 (216)
++-|..-|| -+|..|..+++..|+||++|++++.++++ |+|+.|++.++|. ++++++++|+++++.||.+||
T Consensus 169 anhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg 248 (400)
T KOG0357|consen 169 ANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRG 248 (400)
T ss_pred hhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEec
Confidence 344444443 57899999999999999999999999997 9999999999995 799999999999999999999
Q ss_pred CChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccC
Q psy2833 79 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVP 153 (216)
Q Consensus 79 ~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~ 153 (216)
+|+.+++|.+|++||||||++|.++|.++|+|||+.|+++|..+.+-+ .+|+++|+|+|||+.||-.|++|+
T Consensus 249 ~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaens--- 325 (400)
T KOG0357|consen 249 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENS--- 325 (400)
T ss_pred CcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhcc---
Confidence 999999999999999999999999999999999999999999998877 999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhhhh
Q psy2833 154 GGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRG 207 (216)
Q Consensus 154 Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~ 207 (216)
|-.++|.....+-++. ..++-.+|||+.-...-||+ +-+|+|..+=|.+-
T Consensus 326 gl~pi~~ls~~ka~q~---~~~~~~lGidcl~~G~nDMk-~~~vie~l~~KkqQ 375 (400)
T KOG0357|consen 326 GLDPIETLSDVKARQV---KEMNPALGIDCLHKGTNDMK-EQHVIETLIGKKQQ 375 (400)
T ss_pred CCCchhhhhHhHHHHH---HhcCcccCcchhccCchhhh-hhccHHHhhhhHHH
Confidence 6688887764333332 24566789999877777884 67888888644443
No 26
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=9.3e-29 Score=235.79 Aligned_cols=189 Identities=14% Similarity=0.093 Sum_probs=161.0
Q ss_pred cEEEEecCcccccccc--hhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCC--------
Q psy2833 8 PVLVLSSNTKRDSGRK--VQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNP-------- 69 (216)
Q Consensus 8 ~~~v~~~~~~r~~~~~--~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-------- 69 (216)
++++++.-... ..|+ ++....+||+++++ +++++++ |+|+.|++.+ ++|++|++|.++
T Consensus 271 ~i~avr~~~~~-~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~ 346 (542)
T PRK12849 271 KVAAVKAPGFG-DRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVA 346 (542)
T ss_pred cEEEEeCCCcc-chhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHH
Confidence 67888766533 3333 44444569999999 6888875 9999999865 789999998875
Q ss_pred ---------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833 70 ---------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 122 (216)
Q Consensus 70 ---------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L 122 (216)
+.|||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|
T Consensus 347 ~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L 425 (542)
T PRK12849 347 QIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKAL 425 (542)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHH
Confidence 489999999999999999999999999999999997 9999999999999999
Q ss_pred hhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833 123 ASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF 198 (216)
Q Consensus 123 ~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~ 198 (216)
++++ +.+.++++|++||+++|++|++|+ |.++.|+.. .|+.. + .++|+|..++.+.|+ .+.|||
T Consensus 426 ~~~~~~~g~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~vi~--~L~~~--~----~~~G~d~~~g~~~d~-~~~GV~ 493 (542)
T PRK12849 426 DELAGLNGDQAAGVEIVRRALEAPLRQIAENA---GLDGSVVVA--KVLEL--E----DGFGFNAATGEYGDL-IAAGII 493 (542)
T ss_pred HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHH--HHHhh--C----CCcceeCCCCccccH-HhccCc
Confidence 9885 899999999999999999999999 778888654 33332 1 369999999999986 689999
Q ss_pred ccchhhhhhhhhhhh
Q psy2833 199 FGSVLGVRGALSLVR 213 (216)
Q Consensus 199 ~~~~~~~~~~~~~~~ 213 (216)
|+..++.+++++++-
T Consensus 494 Dp~~vk~~al~~A~e 508 (542)
T PRK12849 494 DPVKVTRSALQNAAS 508 (542)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 27
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.96 E-value=1.4e-28 Score=233.54 Aligned_cols=192 Identities=15% Similarity=0.061 Sum_probs=163.0
Q ss_pred CcEEEEecCccccc-ccchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCC--------
Q psy2833 7 APVLVLSSNTKRDS-GRKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNP-------- 69 (216)
Q Consensus 7 ~~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~-------- 69 (216)
.++++++.-..++. ...++....+||+++++ ++.++.+ |+|+.|++.+ ++|++|++|.++
T Consensus 268 ~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~ 344 (520)
T cd03344 268 LKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIA 344 (520)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHH
Confidence 46788876544443 22344444569999999 7888775 9999999987 689999988775
Q ss_pred ---------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833 70 ---------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 122 (216)
Q Consensus 70 ---------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L 122 (216)
++|||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|
T Consensus 345 ~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L 423 (520)
T cd03344 345 QIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPAL 423 (520)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999997 9999999999999999
Q ss_pred hhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833 123 ASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF 198 (216)
Q Consensus 123 ~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~ 198 (216)
++++ +.+.++++|++||+++|++|++|+ |.++.|+.. .|+.... ++|+|..+|.+.|+ .+.|||
T Consensus 424 ~~~~~~~~~~~~~~~~~a~Al~~ip~~La~Na---G~d~~~vi~--~l~~~~~------~~G~d~~~g~~~d~-~~~gV~ 491 (520)
T cd03344 424 DKLKALNGDEKLGIEIVRRALEAPLRQIAENA---GVDGSVVVE--KVLESPD------GFGYDAATGEYVDM-IEAGII 491 (520)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHhhcC------CEeEECCCCcccch-HhccCe
Confidence 9885 899999999999999999999999 778888765 2333211 79999999999987 689999
Q ss_pred ccchhhhhhhhhhhhh
Q psy2833 199 FGSVLGVRGALSLVRI 214 (216)
Q Consensus 199 ~~~~~~~~~~~~~~~~ 214 (216)
|+..++.+++++++-+
T Consensus 492 Dp~~vk~~~l~~A~~~ 507 (520)
T cd03344 492 DPTKVVRSALQNAASV 507 (520)
T ss_pred ecHHHHHHHHHHHHHH
Confidence 9999999999887643
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=1.1e-28 Score=235.32 Aligned_cols=192 Identities=13% Similarity=0.055 Sum_probs=161.2
Q ss_pred cEEEEecCccccc-ccchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc--------
Q psy2833 8 PVLVLSSNTKRDS-GRKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK-------- 70 (216)
Q Consensus 8 ~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~-------- 70 (216)
++++++.-...+. ...++...+.||+++++ +++++++ |+|+.|++.+ ++|++|++|.+++
T Consensus 271 ~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~ 347 (542)
T PRK00013 271 KVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGDKEAIKARVAQ 347 (542)
T ss_pred eEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCCHHHHHHHHHH
Confidence 4677765542221 12344444569999999 7898876 9999999875 7899999998776
Q ss_pred ---------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833 71 ---------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA 123 (216)
Q Consensus 71 ---------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~ 123 (216)
.+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|+
T Consensus 348 l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~ 426 (542)
T PRK00013 348 IKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALE 426 (542)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997 99999999999999999
Q ss_pred hhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccc
Q psy2833 124 SKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFF 199 (216)
Q Consensus 124 ~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~ 199 (216)
++. ..+.++++|++||+++|++|++|+ |.++.|+.. .|+..+ ..++|+|..++.+.|+ .+.||||
T Consensus 427 ~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~vl~--~l~~~~-----~~~~G~d~~~g~~~d~-~~~gI~D 495 (542)
T PRK00013 427 ALKGLNGDEATGINIVLRALEAPLRQIAENA---GLEGSVVVE--KVKNGK-----GKGYGYNAATGEYVDM-IEAGIID 495 (542)
T ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHhhc-----CCCEeEeCCCCceeeh-hhccCee
Confidence 874 899999999999999999999999 778888765 233322 2479999999999876 6899999
Q ss_pred cchhhhhhhhhhhhh
Q psy2833 200 GSVLGVRGALSLVRI 214 (216)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (216)
+..++.+++++++-+
T Consensus 496 p~~vk~~al~~A~~~ 510 (542)
T PRK00013 496 PTKVTRSALQNAASV 510 (542)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988643
No 29
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.96 E-value=1.2e-28 Score=229.36 Aligned_cols=184 Identities=26% Similarity=0.353 Sum_probs=162.7
Q ss_pred cchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEe--ecCCCceEEEEEeCCChhhHHHHHHHhchhhH
Q psy2833 22 RKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYIT--ECQNPKACTILLRGASKDLLNETERNLQDALH 96 (216)
Q Consensus 22 ~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~--~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~ 96 (216)
+.++.....||++++++++++++ |+|+.++++.+++++|++|+ +|..++.|||+|||+++.+++|.||+++||++
T Consensus 277 ~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~ 356 (485)
T PF00118_consen 277 EDLERIARATGASIISSLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALK 356 (485)
T ss_dssp HHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCcEecccccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHH
Confidence 34555556799999999999886 99999999999999999999 58899999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh
Q psy2833 97 VARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD 171 (216)
Q Consensus 97 v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~ 171 (216)
+++++++++++|||||++|++++.+|++++ ..+.+.++|++||+.+|++|.+|+ |.++.++... |...+
T Consensus 357 ~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~Na---G~~~~~~~~~--l~~~h- 430 (485)
T PF00118_consen 357 VLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNA---GLDSSEVISK--LKSFH- 430 (485)
T ss_dssp HHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHT---TSTHHHHHHH--HHHHH-
T ss_pred HHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhcc---CCCceeeehh--hHhhh-
Confidence 999999999999999999999999999887 788999999999999999999999 7788776642 33321
Q ss_pred hcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhhhhh
Q psy2833 172 NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSLVRI 214 (216)
Q Consensus 172 ~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~ 214 (216)
..+ .++|+|..++++.|+ .+.||||++.++.+++++++.+
T Consensus 431 -~~~-~~~g~d~~~~~i~~~-~~~gi~dp~~~k~~~l~~A~~~ 470 (485)
T PF00118_consen 431 -NNG-NNYGIDLDTGEIVDM-KEAGILDPLLVKISALKSAVEI 470 (485)
T ss_dssp -HST-TTEEEETTTTEEEET-TTTTCEEEHHHHHHHHHHHHHH
T ss_pred -ccc-cccCcCccCCceecc-ccccchhhHHHHHHHHHHHHHH
Confidence 122 289999999999876 5889999999999999988754
No 30
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=3e-28 Score=232.46 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=161.4
Q ss_pred CcEEEEecCcccccccc--hhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCC-------
Q psy2833 7 APVLVLSSNTKRDSGRK--VQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNP------- 69 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~--~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~------- 69 (216)
.++++++.-. ....|+ ++...+.|||++++ ++.++++ |+|+.|++.+ +++++|++|.++
T Consensus 271 ~~i~av~~~~-~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri 346 (545)
T PRK12852 271 LKVAAVKAPG-FGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARV 346 (545)
T ss_pred ceEEEEecCC-cccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHH
Confidence 4788887655 222223 33344569999999 7888775 9999999988 589999988764
Q ss_pred ----------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHH
Q psy2833 70 ----------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV 121 (216)
Q Consensus 70 ----------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~ 121 (216)
+.+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+
T Consensus 347 ~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~ 425 (545)
T PRK12852 347 GQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKA 425 (545)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHH
Confidence 789999999999999999999999999999999996 999999999999999
Q ss_pred Hhhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833 122 SASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV 197 (216)
Q Consensus 122 L~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi 197 (216)
|++++ ..++++++|++||+++|++|++|+ |.++.++.. .|+.. + ..++|+|+.++.+.|+ .+.||
T Consensus 426 L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~Na---G~d~~~vl~--~l~~~--~---~~~~G~d~~~g~~~d~-~~~GI 494 (545)
T PRK12852 426 VGRINNDNADVQAGINIVLKALEAPIRQIAENA---GVEGSIVVG--KILEN--K---SETFGFDAQTEEYVDM-VAKGI 494 (545)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHhh--c---CCCeeEeCcCCCcccH-HhCcC
Confidence 99886 799999999999999999999999 778888654 23332 1 2479999999999987 57899
Q ss_pred cccchhhhhhhhhhhh
Q psy2833 198 FFGSVLGVRGALSLVR 213 (216)
Q Consensus 198 ~~~~~~~~~~~~~~~~ 213 (216)
||+..++.+++++|+-
T Consensus 495 ~Dp~~vk~~al~~A~e 510 (545)
T PRK12852 495 IDPAKVVRTALQDAAS 510 (545)
T ss_pred CcChHHHHHHHHHHHH
Confidence 9999999999988764
No 31
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=4.6e-28 Score=231.11 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=159.4
Q ss_pred cEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc--------
Q psy2833 8 PVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK-------- 70 (216)
Q Consensus 8 ~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~-------- 70 (216)
++++|+...-++.+ ..++....+||+++++ +++++++ |+|+.|++.+ ++|++|++|.+++
T Consensus 272 ~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~ 348 (544)
T PRK12850 272 KSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQ 348 (544)
T ss_pred eEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHH
Confidence 45777654322211 2233344569999999 7888875 9999999886 7899999988754
Q ss_pred ---------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833 71 ---------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA 123 (216)
Q Consensus 71 ---------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~ 123 (216)
.|||+|||+|+++++|+||+++||+++++++++++ +|||||++|+++|..|+
T Consensus 349 l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~ 427 (544)
T PRK12850 349 IRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALR 427 (544)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHH
Confidence 89999999999999999999999999999999995 99999999999999999
Q ss_pred hhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccc
Q psy2833 124 SKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFF 199 (216)
Q Consensus 124 ~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~ 199 (216)
++. ..+.++++|++||+++|++|++|+ |.++.|+.. .|+.. + .++|+|..++.+.|+ .+.||||
T Consensus 428 ~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~v~~--~l~~~--~----~~~G~d~~~g~~~d~-~~~gI~D 495 (544)
T PRK12850 428 GLKGANADETAGIDIVRRALEEPLRQIATNA---GFEGSVVVG--KVAEL--P----GNFGFNAQTGEYGDM-VEAGIID 495 (544)
T ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHhh--C----CCcceeCCCCcccch-hhccCcc
Confidence 874 899999999999999999999999 778888764 23332 1 268999999999887 5899999
Q ss_pred cchhhhhhhhhhhhh
Q psy2833 200 GSVLGVRGALSLVRI 214 (216)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (216)
+..++.+++++++-+
T Consensus 496 p~~vk~~al~~A~~~ 510 (544)
T PRK12850 496 PAKVTRTALQDAASI 510 (544)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999888643
No 32
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.95 E-value=6.4e-28 Score=229.99 Aligned_cols=192 Identities=14% Similarity=0.054 Sum_probs=160.3
Q ss_pred CcEEEEecCccccc-ccchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc-------
Q psy2833 7 APVLVLSSNTKRDS-GRKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK------- 70 (216)
Q Consensus 7 ~~~~v~~~~~~r~~-~~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~------- 70 (216)
-++++|+.-.-++. ...++.....|||++++ ++.++.+ |+|+.|++.+ ++|++|++|.+++
T Consensus 271 ~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~ 347 (541)
T PRK12851 271 LKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVA 347 (541)
T ss_pred eeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHH
Confidence 45677765332221 22233344569999999 6888775 9999999988 7899999987753
Q ss_pred ----------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833 71 ----------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 122 (216)
Q Consensus 71 ----------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L 122 (216)
.+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|..|
T Consensus 348 ~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L 426 (541)
T PRK12851 348 QIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKAL 426 (541)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHH
Confidence 88999999999999999999999999999999997 9999999999999999
Q ss_pred hhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833 123 ASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF 198 (216)
Q Consensus 123 ~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~ 198 (216)
++++ ..+.++++|++||+++|++|++|+ |.++.|+.. .|+.. + .++|+|+.++.+.|+ .+.|||
T Consensus 427 ~~~~~~~~~~~~~~~~~a~AL~~ip~~La~Na---G~d~~~vl~--~l~~~--~----~~~G~d~~~g~~~d~-~~~GIi 494 (541)
T PRK12851 427 DKLETANGDQRTGVEIVRRALEAPVRQIAENA---GAEGSVVVG--KLREK--P----GGYGFNAATNEYGDL-YAQGVI 494 (541)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHhh--C----CCeeeeCCCCCccch-hhccCE
Confidence 9886 789999999999999999999999 778888765 23322 1 269999999999876 689999
Q ss_pred ccchhhhhhhhhhhhh
Q psy2833 199 FGSVLGVRGALSLVRI 214 (216)
Q Consensus 199 ~~~~~~~~~~~~~~~~ 214 (216)
|+..++.+++++++-+
T Consensus 495 Dp~~vk~~al~~A~e~ 510 (541)
T PRK12851 495 DPVKVVRTALQNAASV 510 (541)
T ss_pred ecHHHHHHHHHHHHHH
Confidence 9999999999988643
No 33
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.95 E-value=1.1e-27 Score=229.06 Aligned_cols=191 Identities=15% Similarity=0.094 Sum_probs=159.2
Q ss_pred cEEEEecCcccccc-cchhhhhhhcCceeeeee------cccCc---ceeceEEEEEECCeEEEEEeecC----------
Q psy2833 8 PVLVLSSNTKRDSG-RKVQLENIQAGKYIDSSI------VTLNH---WLCSSQDACLLGDEYFCYITECQ---------- 67 (216)
Q Consensus 8 ~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~sl------~~~~~---g~c~~v~~~~ig~~~~~~~~~~~---------- 67 (216)
++++++.-..++.. ..++...+.||++++++. +++.+ |+|+.|++.+ +++++|++|.
T Consensus 283 ~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~ 359 (555)
T PTZ00114 283 KVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVE 359 (555)
T ss_pred EEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHH
Confidence 57778774443332 234444456999999998 66664 9999999998 4566777665
Q ss_pred -------------------------CCceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833 68 -------------------------NPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 122 (216)
Q Consensus 68 -------------------------~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L 122 (216)
++++|||+|||+|+++++|.+|+++||+++++++++++ +|||||++|+++|.+|
T Consensus 360 ~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L 438 (555)
T PTZ00114 360 LLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLL 438 (555)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHH
Confidence 67899999999999999999999999999999999987 9999999999999999
Q ss_pred hhhh-------hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCC
Q psy2833 123 ASKD-------LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGA 195 (216)
Q Consensus 123 ~~~~-------~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~ 195 (216)
++++ +.+.++++|++||+++|++|++|+ |.++.++.. .|+. .+..++|+|..+|.+.|+ .+.
T Consensus 439 ~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~Na---G~d~~~v~~--~l~~-----~~~~~~G~d~~~g~~~d~-~~~ 507 (555)
T PTZ00114 439 DKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENA---GVEGAVVVE--KILE-----KKDPSFGYDAQTGEYVNM-FEA 507 (555)
T ss_pred HHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHc---CCCHHHHHH--HHHh-----cCCCCEeEeCCCCcEeeH-HhC
Confidence 9763 789999999999999999999999 778777654 2333 344579999999999986 689
Q ss_pred cccccchhhhhhhhhhhh
Q psy2833 196 EVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 196 gi~~~~~~~~~~~~~~~~ 213 (216)
||||+..++.+++++|+-
T Consensus 508 GI~Dp~~vk~~al~~A~~ 525 (555)
T PTZ00114 508 GIIDPTKVVRSALVDAAS 525 (555)
T ss_pred CCEeCHHHHHHHHHHHHH
Confidence 999999999999888764
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.95 E-value=9.7e-28 Score=227.97 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=160.9
Q ss_pred cEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEeecCCCc--------
Q psy2833 8 PVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITECQNPK-------- 70 (216)
Q Consensus 8 ~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~-------- 70 (216)
++++++.-..++.+ ..++...+.||+++++ +++++++ |+|+.|++.+ +++++|++|.+++
T Consensus 270 ~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~ 346 (524)
T TIGR02348 270 NVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQ 346 (524)
T ss_pred ceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHH
Confidence 67777666543333 2344445569999999 8999886 9999999876 6899999887765
Q ss_pred ---------------------------eEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833 71 ---------------------------ACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA 123 (216)
Q Consensus 71 ---------------------------~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~ 123 (216)
.+||+|||+|+++++|+||+++||+++++++++++ +|||||++|+++|.+|+
T Consensus 347 l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~ 425 (524)
T TIGR02348 347 IKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALE 425 (524)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999997 99999999999999999
Q ss_pred hhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccc
Q psy2833 124 SKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFF 199 (216)
Q Consensus 124 ~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~ 199 (216)
+.. ..++++++|++||+++|++|++|+ |.++.|+.. .|+.. ++ .+|+|..++.+.|+ .+.||||
T Consensus 426 ~~~~~~~~~~~~~~~~a~AL~~ip~~La~Na---G~d~~~v~~--~l~~~----~~--~~G~d~~~g~~~d~-~~~gI~D 493 (524)
T TIGR02348 426 GLKGDNEDEAIGIDIVKRALEAPLRQIAENA---GKDGAVVAE--KVKES----KG--NFGFNAATGEYEDL-VEAGIID 493 (524)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHH--HHHhc----CC--CeeEeCcCCcccch-hhccCEE
Confidence 732 899999999999999999999999 778888764 34333 23 29999999999987 5779999
Q ss_pred cchhhhhhhhhhhhh
Q psy2833 200 GSVLGVRGALSLVRI 214 (216)
Q Consensus 200 ~~~~~~~~~~~~~~~ 214 (216)
+..++.+++++++-+
T Consensus 494 p~~vk~~al~~A~~~ 508 (524)
T TIGR02348 494 PTKVTRSALQNAASI 508 (524)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988643
No 35
>PRK14104 chaperonin GroEL; Provisional
Probab=99.95 E-value=2.2e-27 Score=226.52 Aligned_cols=193 Identities=14% Similarity=0.080 Sum_probs=164.5
Q ss_pred CCcEEEEecCcccccc-cchhhhhhhcCceeeee-----ecccCc---ceeceEEEEEECCeEEEEEeecCCC-------
Q psy2833 6 SAPVLVLSSNTKRDSG-RKVQLENIQAGKYIDSS-----IVTLNH---WLCSSQDACLLGDEYFCYITECQNP------- 69 (216)
Q Consensus 6 ~~~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~s-----l~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~------- 69 (216)
..++++|+.-..++.+ ..++...+.||++++++ ++++++ |+|+.+++ +++++++|++|.++
T Consensus 270 ~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri 346 (546)
T PRK14104 270 GLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARV 346 (546)
T ss_pred eeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHH
Confidence 3578888777654443 34555556799999999 888875 99999884 77899999999875
Q ss_pred ----------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHH
Q psy2833 70 ----------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV 121 (216)
Q Consensus 70 ----------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~ 121 (216)
+.+||+|||+|+++++|+||+++||+++++++++++ +|||||++|+++|..
T Consensus 347 ~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~ 425 (546)
T PRK14104 347 AQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQ 425 (546)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHH
Confidence 899999999999999999999999999999999997 999999999999999
Q ss_pred Hhhhh----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833 122 SASKD----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV 197 (216)
Q Consensus 122 L~~~~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi 197 (216)
|+++. ..+.++++|++||+++|++|++|+ |.++.++.. .|+.. +..++|+|..++.+.|+ .+.||
T Consensus 426 L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~Na---G~d~~~v~~--~l~~~-----~~~~~G~d~~~g~~~d~-~~~GI 494 (546)
T PRK14104 426 LKGIKTKNDDQKTGVEIVRKALSAPARQIAINA---GEDGSVIVG--KILEK-----EQYSYGFDSQTGEYGNL-VSKGI 494 (546)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhC---CCCHHHHHH--HHHhc-----CCCcEeEeCCCCceeeh-HhcCC
Confidence 99875 788999999999999999999999 778887765 23322 13469999999999987 57899
Q ss_pred cccchhhhhhhhhhhh
Q psy2833 198 FFGSVLGVRGALSLVR 213 (216)
Q Consensus 198 ~~~~~~~~~~~~~~~~ 213 (216)
||++.++.++++++.-
T Consensus 495 ~Dp~~vk~~al~~A~~ 510 (546)
T PRK14104 495 IDPTKVVRTAIQNAAS 510 (546)
T ss_pred EEcHHHHHHHHHHHHH
Confidence 9999999999988764
No 36
>KOG0358|consensus
Probab=99.95 E-value=1.1e-27 Score=215.87 Aligned_cols=196 Identities=23% Similarity=0.254 Sum_probs=165.3
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEE-EECCeEEEEEeecCC-CceEEEEEeCCCh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDAC-LLGDEYFCYITECQN-PKACTILLRGASK 81 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~-~ig~~~~~~~~~~~~-~~~~TIllrG~t~ 81 (216)
-++||+++-.+.|....++ +.|+.|+++++.+++ |+++.+++. .-|+.+++-++++.+ ..+|||++||+++
T Consensus 315 lkimvikdieRediefick----~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~ 390 (534)
T KOG0358|consen 315 LKIMVIKDIEREDIEFICK----TLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNK 390 (534)
T ss_pred CcEEEEccccHhhHHHHHh----hcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCch
Confidence 4789999988877666655 899999999999987 999999998 556669999999987 7899999999999
Q ss_pred hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Q psy2833 82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGG 156 (216)
Q Consensus 82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggg 156 (216)
.++||.||++||||||+|+..+-+.+++|||+.|++++.+|.+++ ...++.|+|+|||++||.+|++|+ |-.
T Consensus 391 lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNA---GLn 467 (534)
T KOG0358|consen 391 LVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENA---GLN 467 (534)
T ss_pred hhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhC---CCC
Confidence 999999999999999999999999999999999999999999988 789999999999999999999999 557
Q ss_pred hhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchh-------hhhhhhhhhhh
Q psy2833 157 AVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVL-------GVRGALSLVRI 214 (216)
Q Consensus 157 a~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~-------~~~~~~~~~~~ 214 (216)
++++.. .|+.. |..|...+||+.-.|...++-++. |-.+..| +.....|+.+|
T Consensus 468 pI~~Vt--ELRn~--haqge~~aGInVRkg~~tni~ee~-VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 468 PIATVT--ELRNR--HAQGEKNAGINVRKGGITNILEEN-VVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred hhhHHH--HHHHH--HhcCCcccceeeecccchhhHHHh-cccceeeeHHHHHHHHHHHHHHhhh
Confidence 776654 44433 456888999999999887764433 6666543 44444555544
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-27 Score=224.75 Aligned_cols=177 Identities=21% Similarity=0.171 Sum_probs=157.6
Q ss_pred hhhhcCceeeeeecccCc---ce--eceEEEEEECCeEEEEEeecCC--CceEEEEEeCCChhhHHHHHHHhchhhHHHH
Q psy2833 27 ENIQAGKYIDSSIVTLNH---WL--CSSQDACLLGDEYFCYITECQN--PKACTILLRGASKDLLNETERNLQDALHVAR 99 (216)
Q Consensus 27 ~~i~~G~~i~~sl~~~~~---g~--c~~v~~~~ig~~~~~~~~~~~~--~~~~TIllrG~t~~~l~E~ersi~Dal~v~~ 99 (216)
....+||++++++.++++ |. |+.+++.++|++++++|++|+. +++|||++||+|+++++|.||+++|||++++
T Consensus 309 l~~~~ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~ 388 (524)
T COG0459 309 LAKLGGAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVR 388 (524)
T ss_pred HHHccCceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHH
Confidence 344699999999999986 88 9999999999999999999986 8899999999999999999999999999999
Q ss_pred HHhcCCeEEecCCchhHHHHHHHhhh--h----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhc
Q psy2833 100 NIMLEPKLVPGGGAVEMAVSHVSASK--D----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNL 173 (216)
Q Consensus 100 ~~~~~~~vV~GGGa~E~~ls~~L~~~--~----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~ 173 (216)
+++++|++|||||++|++++.+|+++ . .++.++++|++||+.+|++|++|+ |.++.++.. .|+..+
T Consensus 389 ~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~Na---G~d~~~v~~--~L~~~~--- 460 (524)
T COG0459 389 AAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENA---GLDPIEVLS--KLRSAH--- 460 (524)
T ss_pred HHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHH--HHHhcc---
Confidence 99999999999999999999999987 2 689999999999999999999999 778888765 333321
Q ss_pred CCceEEEEeeccCCC-CCCCCCCcccccchhhhhhhhhhhh
Q psy2833 174 LGRVVVTLGLHAGGP-GLIPGGAEVFFGSVLGVRGALSLVR 213 (216)
Q Consensus 174 ~g~~~~~i~~~~~~~-~~~~~~~gi~~~~~~~~~~~~~~~~ 213 (216)
. ...+|+|++++.. .|| .+.||||+..++.++++++.-
T Consensus 461 ~-~~~~G~d~~~~~~~~dm-~~~GI~dP~~v~~~al~~A~e 499 (524)
T COG0459 461 A-TTNYGIDAFTGEYEDDM-IEAGIIDPLKVKRSALKNAAE 499 (524)
T ss_pred c-CCccceeccCCccccch-HhccCcChHHHHHHHHHHHHH
Confidence 1 3459999999988 445 679999999999999998753
No 38
>CHL00093 groEL chaperonin GroEL
Probab=99.94 E-value=6.7e-27 Score=222.46 Aligned_cols=192 Identities=14% Similarity=0.078 Sum_probs=160.0
Q ss_pred CcEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEEECCeEEEEEee---------cCC
Q psy2833 7 APVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACLLGDEYFCYITE---------CQN 68 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~ig~~~~~~~~~---------~~~ 68 (216)
.++++++.-.+.+.+ ..++....+||+++++ ++.++.+ |+|+.|++.+ +++++|++ |+.
T Consensus 271 ~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~ 347 (529)
T CHL00093 271 VNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQ 347 (529)
T ss_pred ceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHH
Confidence 477888776665533 2344455569999999 7888876 9999999986 68898874 332
Q ss_pred C-------------------------ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHh
Q psy2833 69 P-------------------------KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSA 123 (216)
Q Consensus 69 ~-------------------------~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~ 123 (216)
. ..+||+|||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|+
T Consensus 348 ~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~ 426 (529)
T CHL00093 348 LRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLK 426 (529)
T ss_pred HHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHH
Confidence 1 388899999999999999999999999999999997 99999999999999999
Q ss_pred hhh------hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcc
Q psy2833 124 SKD------LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEV 197 (216)
Q Consensus 124 ~~~------~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi 197 (216)
+++ ..+.++++|++||+++|++|++|+ |.++.++.. .|+.. ..++|+|..+|.+.|+ .+.||
T Consensus 427 ~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~Na---G~d~~~v~~--~l~~~------~~~~G~d~~~g~~~d~-~~~GI 494 (529)
T CHL00093 427 TWAKNNLKEDELIGALIVARAILAPLKRIAENA---GKNGSVIIE--KVQEQ------DFEIGYNAANNKFVNM-YEAGI 494 (529)
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHHHH--HHHcc------CCCEeEECCCCcccch-HhccC
Confidence 872 789999999999999999999999 778887653 23221 2379999999999987 67899
Q ss_pred cccchhhhhhhhhhhhh
Q psy2833 198 FFGSVLGVRGALSLVRI 214 (216)
Q Consensus 198 ~~~~~~~~~~~~~~~~~ 214 (216)
||++.++.+++++|+-+
T Consensus 495 ~Dp~~vk~~al~~A~e~ 511 (529)
T CHL00093 495 IDPAKVTRSALQNAASI 511 (529)
T ss_pred EEcHHHHHHHHHHHHHH
Confidence 99999999999988643
No 39
>KOG0362|consensus
Probab=99.94 E-value=1.8e-26 Score=212.86 Aligned_cols=190 Identities=20% Similarity=0.319 Sum_probs=169.2
Q ss_pred cEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEe-ecCCCceEEEEEeCCChhh
Q psy2833 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYIT-ECQNPKACTILLRGASKDL 83 (216)
Q Consensus 8 ~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~-~~~~~~~~TIllrG~t~~~ 83 (216)
.+||++-|+|.|.+|-+. .+|+++++++..+.+ |+|+.|+..++||..++.|. ++...+..|++|||+++.+
T Consensus 304 ~ImVlqi~Sk~eLrrlcr----tvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~ 379 (537)
T KOG0362|consen 304 KIMVLQINSKFDLRRLCR----TVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSI 379 (537)
T ss_pred cEEEEEeccHhhHHHHHH----HcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhh
Confidence 589999999999999887 799999999999875 99999999999999999887 4456789999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChh
Q psy2833 84 LNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAV 158 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~ 158 (216)
||++||+++|++..++..+++++++||+|++|++|+++|.+|+ ..+.+++.|++||+.+|++|++|+ |-.++
T Consensus 380 LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEna---gl~~~ 456 (537)
T KOG0362|consen 380 LDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENA---GLAVT 456 (537)
T ss_pred HHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhc---CCcHH
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999 66889
Q ss_pred HHHHHHHHHHhhhhcCCceEEEEeeccCC-CCCCCCCCcccccchhhhhhhhh
Q psy2833 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGG-PGLIPGGAEVFFGSVLGVRGALS 210 (216)
Q Consensus 159 E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-~~~~~~~~gi~~~~~~~~~~~~~ 210 (216)
|+.. ..|+.|. +.+..++|...+. ..| +.++|+||-...|-.+++-
T Consensus 457 evia----~ly~~h~-~g~~~g~di~~e~~~~d-~~~~~i~D~~~~K~~a~k~ 503 (537)
T KOG0362|consen 457 EVIA----KLYAVHQ-GGKNLGMDIEAEGGTID-VREEGIWDTLAVKAQAIKL 503 (537)
T ss_pred HHHH----HHHHhhc-CCCcceeeeeccccccC-hhhhchHHHHHHHHHHHHH
Confidence 9876 3466666 5556899998884 554 4789999988776666554
No 40
>KOG0360|consensus
Probab=99.94 E-value=1.5e-27 Score=219.02 Aligned_cols=176 Identities=23% Similarity=0.224 Sum_probs=155.5
Q ss_pred hhcCceeeeeecccC------c---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHHH
Q psy2833 29 IQAGKYIDSSIVTLN------H---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVAR 99 (216)
Q Consensus 29 i~~G~~i~~sl~~~~------~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~~ 99 (216)
-+||+++++|+-+++ + |+|+.|.+.+|||++++.+.+.+.. +|+|+|||+|++.+||+||++||++||++
T Consensus 324 katGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlk 402 (545)
T KOG0360|consen 324 KATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLK 402 (545)
T ss_pred HhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHH
Confidence 369999999999875 1 8999999999999999999986655 99999999999999999999999999999
Q ss_pred HHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh---
Q psy2833 100 NIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD--- 171 (216)
Q Consensus 100 ~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~--- 171 (216)
..++++++|||||++|.+|+.+|++|+ +++.++--|+.||.+||++|.-|+ +.+++|+.. .|+.|+.
T Consensus 403 rtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~na---a~Dstelvt--~lra~Hs~~q 477 (545)
T KOG0360|consen 403 RTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNA---AKDSTELVT--KLRAYHSVSQ 477 (545)
T ss_pred HHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhh---ccccccccc--cccCCchhhc
Confidence 999999999999999999999999998 899999999999999999999998 668888764 3343332
Q ss_pred ---hcCCceEEEEeeccCCCCCCCCCCcccccchhhhhhhhhh
Q psy2833 172 ---NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGALSL 211 (216)
Q Consensus 172 ---~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~ 211 (216)
.-.+..|+|+|+.+|.++|+ -++|++++.++++.-++++
T Consensus 478 ~~p~~~~~k~~GldL~ng~~~dn-~~~g~~ep~~~kvksLk~a 519 (545)
T KOG0360|consen 478 DNPWRLLLKQYGLDLINGKIRDN-KSAGSFEPPIVKVKSLKFA 519 (545)
T ss_pred cCCccccchhhCccccccEeecc-eeeeeeccceeehhhhHHH
Confidence 23577899999999999987 5789999998887665544
No 41
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.92 E-value=5.2e-25 Score=212.18 Aligned_cols=196 Identities=12% Similarity=0.091 Sum_probs=159.0
Q ss_pred CCcEEEEecCcccccc-cchhhhhhhcCceeee-----eecccCc---ceeceEEEEE-----ECC--------eEEEEE
Q psy2833 6 SAPVLVLSSNTKRDSG-RKVQLENIQAGKYIDS-----SIVTLNH---WLCSSQDACL-----LGD--------EYFCYI 63 (216)
Q Consensus 6 ~~~~~v~~~~~~r~~~-~~~~~~~i~~G~~i~~-----sl~~~~~---g~c~~v~~~~-----ig~--------~~~~~~ 63 (216)
..++++++.-..-+.. ..++...+.||+++++ ++.++.+ |+|+.|++++ +|+ +++++|
T Consensus 324 ~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i 403 (600)
T PLN03167 324 SLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQI 403 (600)
T ss_pred cceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHH
Confidence 4567777665543332 2344445569999999 6777765 9999999998 887 488888
Q ss_pred eecC------------C------CceEEEE-EeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhh
Q psy2833 64 TECQ------------N------PKACTIL-LRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSAS 124 (216)
Q Consensus 64 ~~~~------------~------~~~~TIl-lrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~ 124 (216)
++|. + +.++||+ +||+|+++++|.||+++||+++++++++++ +|||||++|+++|.+|++
T Consensus 404 ~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~ 482 (600)
T PLN03167 404 KNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDA 482 (600)
T ss_pred HhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHH
Confidence 8764 1 2356776 999999999999999999999999999999 999999999999999998
Q ss_pred hh-----hhhHH-HHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCccc
Q psy2833 125 KD-----LLNET-ERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVF 198 (216)
Q Consensus 125 ~~-----~~~e~-~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~ 198 (216)
++ +.+.+ .+.+++||+++|++|++|+ |.++.|+.. .|+ +. +..++|+|+.++.+.|| .++|||
T Consensus 483 ~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NA---G~d~~~vv~--~L~--~~---~~~~~G~d~~~g~~~dm-~~~GI~ 551 (600)
T PLN03167 483 IKDTLENDEQKVGADIVKRALSYPLKLIAKNA---GVNGSVVSE--KVL--SN---DNPKFGYNAATGKYEDL-MAAGII 551 (600)
T ss_pred HHhcCCChhHHHHHHHHHHHHhcchhhhhhcC---CCCHHHHHH--HHH--hc---CCCCEeEeCCCCcCcch-HhccCe
Confidence 85 45544 8999999999999999999 778888765 232 11 24579999999999987 689999
Q ss_pred ccchhhhhhhhhhhh
Q psy2833 199 FGSVLGVRGALSLVR 213 (216)
Q Consensus 199 ~~~~~~~~~~~~~~~ 213 (216)
|+..++.++++++.-
T Consensus 552 Dp~~Vk~~al~~A~~ 566 (600)
T PLN03167 552 DPTKVVRCCLEHAAS 566 (600)
T ss_pred ecHHHHHHHHHHHHH
Confidence 999999998888764
No 42
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.67 E-value=8.6e-17 Score=140.95 Aligned_cols=97 Identities=23% Similarity=0.292 Sum_probs=84.4
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeec-ccCc---ceeceEEEEEECC-----eEEEEEeecCCCceEEEEEe
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIV-TLNH---WLCSSQDACLLGD-----EYFCYITECQNPKACTILLR 77 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~-~~~~---g~c~~v~~~~ig~-----~~~~~~~~~~~~~~~TIllr 77 (216)
+.++++++-.+.+..|..+ +|||.+++++. .+++ |+|+.|+++++|+ ++|+||++|+.+++|||+||
T Consensus 151 ~gI~~v~~v~~~dl~rIa~----~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLR 226 (261)
T cd03334 151 AGITLVLNVKPSVLERISR----CTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLR 226 (261)
T ss_pred CCCEEEEecCHHHHHHHHH----HhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEE
Confidence 4678887777766655433 89999999954 6665 9999999999996 69999999999999999999
Q ss_pred CCChhhHHHHHHHhchhhHHHHHHhcCCeE
Q psy2833 78 GASKDLLNETERNLQDALHVARNIMLEPKL 107 (216)
Q Consensus 78 G~t~~~l~E~ersi~Dal~v~~~~~~~~~v 107 (216)
|+|+++++|+||+++||++++++...+.++
T Consensus 227 G~t~~~lde~eR~i~Dal~v~~~~~le~~~ 256 (261)
T cd03334 227 GGDLEELKKVKRVVEFMVFAAYHLKLETSF 256 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999877654
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.61 E-value=2.2e-15 Score=126.94 Aligned_cols=94 Identities=32% Similarity=0.430 Sum_probs=81.2
Q ss_pred CcEEEEecCcccccccchhhhhhhcCceeeeeecccCc---ceeceEEEEEECCeEEEEEeecCCCceEEEEEeCCChhh
Q psy2833 7 APVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNH---WLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDL 83 (216)
Q Consensus 7 ~~~~v~~~~~~r~~~~~~~~~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~ 83 (216)
..++|++...+++ ++....+|||.++++++++++ |+|+.|+++++|+++|++|++|+.+.+|||+|||||+++
T Consensus 113 ~~I~~v~~~~~~~----l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~ 188 (209)
T cd03333 113 AGIMAVRRVKKED----LERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVE 188 (209)
T ss_pred CCCEEEEeCCHHH----HHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhH
Confidence 4577776633322 333445799999999999886 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHhcC
Q psy2833 84 LNETERNLQDALHVARNIMLE 104 (216)
Q Consensus 84 l~E~ersi~Dal~v~~~~~~~ 104 (216)
++|+||+++||++++++++++
T Consensus 189 l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 189 LDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999998764
No 44
>KOG0357|consensus
Probab=99.19 E-value=5.5e-12 Score=113.01 Aligned_cols=88 Identities=27% Similarity=0.389 Sum_probs=80.0
Q ss_pred HHhcCCeEEe--cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCce
Q psy2833 100 NIMLEPKLVP--GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRV 177 (216)
Q Consensus 100 ~~~~~~~vV~--GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~ 177 (216)
..++|.+.|+ -+|+..| +++|+.|++|||||+|++++.+|++|+|||+.|+.+|..+.+.|.+.+|.+
T Consensus 234 Eqc~nskaVTifvRg~Nkm----------ii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~e 303 (400)
T KOG0357|consen 234 EQCKNSKAVTIFVRGGNKM----------IIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIE 303 (400)
T ss_pred EecCCCceEEEEEecCcce----------eHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHH
Confidence 4567777777 8888888 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCC----CCCCCCCCcc
Q psy2833 178 VVTLGLHAGG----PGLIPGGAEV 197 (216)
Q Consensus 178 ~~~i~~~~~~----~~~~~~~~gi 197 (216)
||++.+|+.+ |..+++|+|+
T Consensus 304 qya~rafa~ale~ipmalaensgl 327 (400)
T KOG0357|consen 304 QYAFRAFADALESIPMALAENSGL 327 (400)
T ss_pred HHHHHHHHHHHhhcchhhhhccCC
Confidence 9999999984 6667888875
No 45
>KOG0358|consensus
Probab=98.85 E-value=7.1e-10 Score=101.16 Aligned_cols=83 Identities=28% Similarity=0.340 Sum_probs=74.4
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-+|+..+ .++|++|++|||||+|+.+.+....+||||+.||+++..|..+|....|.+.|++..|+..
T Consensus 385 ~RGsn~l----------vleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlE 454 (534)
T KOG0358|consen 385 LRGSNKL----------VLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALE 454 (534)
T ss_pred EecCchh----------hhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHh
Confidence 4566666 8999999999999999999999999999999999999999999999999999999999983
Q ss_pred --CCCCCCCCcccccch
Q psy2833 188 --PGLIPGGAEVFFGSV 202 (216)
Q Consensus 188 --~~~~~~~~gi~~~~~ 202 (216)
|-.+++|+|+.-=.+
T Consensus 455 vIP~tLAeNAGLnpI~~ 471 (534)
T KOG0358|consen 455 VIPYTLAENAGLNPIAT 471 (534)
T ss_pred cccHhHHhhCCCChhhH
Confidence 667899999876543
No 46
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.82 E-value=9e-10 Score=104.23 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=73.1
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. .++|.+|+++|||+++..++.++++|||||++|+.++.+|++++.+.++.+|++++.|+..
T Consensus 334 lrg~t~~----------~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~ 403 (484)
T cd03342 334 IKGPNDH----------TITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALL 403 (484)
T ss_pred EeCCCHH----------HHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 5666777 8999999999999999999999999999999999999999999998999999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|. |+.
T Consensus 404 ~ip~~La~NaG~-d~~ 418 (484)
T cd03342 404 VIPKTLAENSGL-DVQ 418 (484)
T ss_pred HHHHHHHHHcCC-CHH
Confidence 6778899994 554
No 47
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.82 E-value=9.8e-10 Score=104.84 Aligned_cols=81 Identities=30% Similarity=0.424 Sum_probs=73.6
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. .++|.+|+++|||+++..++.++++|||||++|+.++..|++++.+.++.++++++.|+..
T Consensus 366 lrG~t~~----------~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale 435 (519)
T TIGR02341 366 LRGATQQ----------ILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALR 435 (519)
T ss_pred EeCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 6777887 8999999999999999999999999999999999999999999988999999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|+ |+.
T Consensus 436 ~ip~~La~NaG~-d~~ 450 (519)
T TIGR02341 436 QLPTIIADNAGF-DSA 450 (519)
T ss_pred HHHHHHHHHCCC-CHH
Confidence 7778899996 544
No 48
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.80 E-value=1.2e-09 Score=104.59 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.7
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. .++|.+|+++||++++..++.++++|||||++|+.++.+|++++...++.+|+++++|+.+
T Consensus 375 I~lrG~t~~----------~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~A 444 (531)
T TIGR02347 375 ILIKGPNDH----------TIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANA 444 (531)
T ss_pred EEEeCCCHH----------HHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 336778888 8999999999999999999999999999999999999999999988899999999999984
Q ss_pred ----CCCCCCCCcccccc
Q psy2833 188 ----PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 ----~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|+ |+.
T Consensus 445 Le~ip~~La~NaG~-d~~ 461 (531)
T TIGR02347 445 LLVIPKTLAENSGL-DAQ 461 (531)
T ss_pred HHHHHHHHHHhcCC-CHH
Confidence 7778899995 554
No 49
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.80 E-value=1.3e-09 Score=103.90 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=73.6
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. .++|.+|+++|||+++..++.++++|||||++|+.++..|++++.+.++.+++++++|+..
T Consensus 365 lrG~t~~----------~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe 434 (517)
T cd03336 365 LRGASQQ----------ILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALR 434 (517)
T ss_pred EeCCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHH
Confidence 6777777 7999999999999999999999999999999999999999999999999999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|. |+.
T Consensus 435 ~ip~~La~NaG~-d~~ 449 (517)
T cd03336 435 QLPTIIADNAGY-DSA 449 (517)
T ss_pred HHHHHHHHhCCC-CHH
Confidence 7778899995 554
No 50
>CHL00093 groEL chaperonin GroEL
Probab=98.79 E-value=8.1e-09 Score=98.87 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=74.1
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh-hcCCceEEEEeecc
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD-NLLGRVVVTLGLHA 185 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~-~~~g~~~~~i~~~~ 185 (216)
.+..||++|. .+++.+|+++||++++..++.++ +|||||++|+.+|..|++++. ..++.+|+++++|+
T Consensus 377 ~I~irg~t~~----------~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a 445 (529)
T CHL00093 377 VIKVGAATET----------EMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVA 445 (529)
T ss_pred EEEeccCcHH----------HHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence 3668999999 89999999999999999999885 999999999999999999987 78999999999999
Q ss_pred CC----CCCCCCCCcccccc
Q psy2833 186 GG----PGLIPGGAEVFFGS 201 (216)
Q Consensus 186 ~~----~~~~~~~~gi~~~~ 201 (216)
.+ |+.+++|+|+ |+.
T Consensus 446 ~AL~~ip~~La~NaG~-d~~ 464 (529)
T CHL00093 446 RAILAPLKRIAENAGK-NGS 464 (529)
T ss_pred HHHHHHHHHHHHhcCC-CHH
Confidence 84 6678899996 443
No 51
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.79 E-value=1.2e-09 Score=103.18 Aligned_cols=74 Identities=47% Similarity=0.581 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcccccc
Q psy2833 127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVFFGS 201 (216)
Q Consensus 127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~~~~ 201 (216)
.+++.+|+++|||+++..++.+++++||||++||.+|.+|++++.+.++.+|+++++|+.+ |+.+++|+|+ |+.
T Consensus 338 ~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~-d~~ 415 (480)
T cd03337 338 VLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGA-NVI 415 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCC-CHH
Confidence 8999999999999999999999999999999999999999999988999999999999984 7778889995 443
No 52
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=98.78 E-value=1.6e-09 Score=103.62 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=73.5
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. .++|.+|+++|||+++..++.++++|||||++|+.+|..|++++...++.++++++.|+..
T Consensus 377 lrG~t~~----------~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~ 446 (533)
T PTZ00212 377 LRGASTH----------ILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALR 446 (533)
T ss_pred EECCChh----------HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 6777777 7999999999999999999999999999999999999999999999999999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|+ |+.
T Consensus 447 ~ip~~La~NaG~-d~~ 461 (533)
T PTZ00212 447 QIPTIIADNGGY-DSA 461 (533)
T ss_pred HHHHHHHHhCCC-CHH
Confidence 7778899995 554
No 53
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.77 E-value=4.5e-09 Score=100.34 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=73.9
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. .+++.+|+++|||+++..++.++++|||||++||.++..|++++...++.+++++++|+.+
T Consensus 376 IllrG~t~~----------~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~a 445 (526)
T cd03339 376 IFIRGGNKM----------IIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADA 445 (526)
T ss_pred EEEECCCHH----------HHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 336777787 7999999999999999999999999999999999999999999988999999999999984
Q ss_pred ----CCCCCCCCcccccc
Q psy2833 188 ----PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 ----~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|. |+.
T Consensus 446 L~~ip~~L~~NaG~-d~~ 462 (526)
T cd03339 446 LESIPLALAENSGL-NPI 462 (526)
T ss_pred HHHHHHHHHHHCCC-CHH
Confidence 6778889995 443
No 54
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.77 E-value=1.9e-09 Score=102.90 Aligned_cols=81 Identities=44% Similarity=0.512 Sum_probs=72.5
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. .+++.+|+++|||+++..++.++.+|||||++||.+|..|++++...++.+++++++|+.+
T Consensus 372 LrG~t~~----------~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~ 441 (525)
T TIGR02344 372 LRGASKD----------VLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALE 441 (525)
T ss_pred EEcCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5566666 8999999999999999999999999999999999999999999988999999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|+ |+.
T Consensus 442 ~ip~~La~NaG~-d~~ 456 (525)
T TIGR02344 442 IIPRTLAQNCGV-NVI 456 (525)
T ss_pred HHHHHHHHHCCC-CHH
Confidence 7778899995 544
No 55
>KOG0361|consensus
Probab=98.76 E-value=1.6e-09 Score=99.00 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=75.8
Q ss_pred HHhchhhHHHHHHhcCCeE--EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHH
Q psy2833 89 RNLQDALHVARNIMLEPKL--VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 166 (216)
Q Consensus 89 rsi~Dal~v~~~~~~~~~v--V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L 166 (216)
|.+..--.-+...+...+. +.-+|..|. .+.|++|++|||++++++.|+.+.+|+||||+||++|+.|
T Consensus 351 ~QvG~eRyN~Fegcp~aktcTliLRGgaeq----------fieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~l 420 (543)
T KOG0361|consen 351 RQVGGERYNLFEGCPKAKTCTLILRGGAEQ----------FIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYL 420 (543)
T ss_pred HhhcchhhhhhcCCCccceeEEEEeccHHH----------HHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHH
Confidence 4455544444444444322 223344444 6899999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceEEEEeeccCC----CCCCCCCCc
Q psy2833 167 SCFQDNLLGRVVVTLGLHAGG----PGLIPGGAE 196 (216)
Q Consensus 167 ~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~g 196 (216)
++|+.++.|++|+-+++++.. |+.+..|+|
T Consensus 421 Rd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaG 454 (543)
T KOG0361|consen 421 RDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAG 454 (543)
T ss_pred HHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcC
Confidence 999999999999999999883 555555665
No 56
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.75 E-value=2.2e-09 Score=102.38 Aligned_cols=83 Identities=28% Similarity=0.387 Sum_probs=74.5
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. ..+|.+|+++||++++..++.++.+|||||++||.+|.+|++++...++.+|++++.|+..
T Consensus 366 IllrG~t~~----------~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~a 435 (517)
T TIGR02342 366 VLLRGSNKL----------VIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADA 435 (517)
T ss_pred EEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 337777888 8999999999999999999999999999999999999999999988999999999999984
Q ss_pred ----CCCCCCCCcccccc
Q psy2833 188 ----PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 ----~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|. |+.
T Consensus 436 l~~ip~~La~NaG~-d~~ 452 (517)
T TIGR02342 436 LEVIPYTLAENAGL-NPI 452 (517)
T ss_pred HHHHHHHHHHHcCC-CHH
Confidence 7778899995 553
No 57
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.75 E-value=2.2e-09 Score=102.72 Aligned_cols=78 Identities=28% Similarity=0.422 Sum_probs=71.9
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. ..+|.+|+++|||+++..++.++++|||||++||.++.+|++++.+.++.+|+++++|+..
T Consensus 382 lrG~t~~----------~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe 451 (532)
T TIGR02343 382 IRGGNKM----------IIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALE 451 (532)
T ss_pred EECCCHH----------HHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 6777777 8999999999999999999999999999999999999999999988999999999999984
Q ss_pred --CCCCCCCCcc
Q psy2833 188 --PGLIPGGAEV 197 (216)
Q Consensus 188 --~~~~~~~~gi 197 (216)
|+.+++|+|.
T Consensus 452 ~ip~~La~NaG~ 463 (532)
T TIGR02343 452 EIPMALAENSGL 463 (532)
T ss_pred HHHHHHHHHCCC
Confidence 6678889986
No 58
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.74 E-value=2.3e-09 Score=102.39 Aligned_cols=84 Identities=32% Similarity=0.412 Sum_probs=74.7
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. .++|.+|+++|||+++..++.++++|||||++|+.++..|++++...++.+++++++|+.
T Consensus 366 TIllrG~t~~----------~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~ 435 (527)
T cd03335 366 SIILRGANDF----------MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAE 435 (527)
T ss_pred EEEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 3337788887 799999999999999999999999999999999999999999999899999999999998
Q ss_pred C----CCCCCCCCcccccc
Q psy2833 187 G----PGLIPGGAEVFFGS 201 (216)
Q Consensus 187 ~----~~~~~~~~gi~~~~ 201 (216)
. |+.+++|+|. |+.
T Consensus 436 aL~~ip~~La~NaG~-d~~ 453 (527)
T cd03335 436 ALLVIPKTLAVNAAK-DAT 453 (527)
T ss_pred HHHHHHHHHHHHCCC-CHH
Confidence 4 6667889994 554
No 59
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.70 E-value=3.9e-09 Score=101.06 Aligned_cols=84 Identities=32% Similarity=0.438 Sum_probs=74.4
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. ..+|.+|+++|||+++..++.++++|||||++|+.++.+|++++...++.++++++.|+.
T Consensus 370 TIlirG~t~~----------~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~ 439 (536)
T TIGR02340 370 SIILRGANDF----------MLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAE 439 (536)
T ss_pred EEEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHH
Confidence 3447888888 899999999999999999999999999999999999999999988889999999999998
Q ss_pred C----CCCCCCCCcccccc
Q psy2833 187 G----PGLIPGGAEVFFGS 201 (216)
Q Consensus 187 ~----~~~~~~~~gi~~~~ 201 (216)
. |+.+++|+|. |+.
T Consensus 440 AL~~ip~~La~NaG~-d~~ 457 (536)
T TIGR02340 440 ALLIIPKVLAVNAAL-DST 457 (536)
T ss_pred HHHHHHHHHHHHCCC-CHH
Confidence 4 5567888995 543
No 60
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=98.70 E-value=3.8e-09 Score=100.48 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=72.9
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. ..++.+|+++|||+++..++.++++|||||++|+.++..|++++...++.+++++++|+..
T Consensus 366 I~lrG~t~~----------~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~a 435 (517)
T cd03343 366 ILLRGGTEH----------VVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADA 435 (517)
T ss_pred EEEECCcHH----------HHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 335666676 7999999999999999999999999999999999999999999888899999999999984
Q ss_pred ----CCCCCCCCcccccc
Q psy2833 188 ----PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 ----~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|+ |+.
T Consensus 436 L~~ip~~L~~NaG~-d~~ 452 (517)
T cd03343 436 LEEIPRTLAENAGL-DPI 452 (517)
T ss_pred HHHHHHHHHHHcCC-CHH
Confidence 6667888985 443
No 61
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.70 E-value=3.9e-09 Score=100.76 Aligned_cols=81 Identities=27% Similarity=0.411 Sum_probs=72.7
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. .++|.+|+++|||+++..++.++.+|||||++|+.++.+|++++.+.++.++++++.|+..
T Consensus 371 lrG~t~~----------~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~ 440 (522)
T TIGR02345 371 LRGGAEQ----------FIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALE 440 (522)
T ss_pred EECCCHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 6677777 8999999999999999999999999999999999999999999988999999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|. |+.
T Consensus 441 ~ip~~La~NaG~-d~~ 455 (522)
T TIGR02345 441 IIPRSLCENAGF-DSI 455 (522)
T ss_pred HHHHHHHHHCCC-CHH
Confidence 6667889995 443
No 62
>KOG0363|consensus
Probab=98.69 E-value=1e-08 Score=93.32 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=76.4
Q ss_pred eEEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeecc
Q psy2833 106 KLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHA 185 (216)
Q Consensus 106 ~vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~ 185 (216)
+.+.-+|++.. +++|++|++|||||++..+..+.+.+.|||+.||.+++.+.++|++.+|++..+|.+|+
T Consensus 366 ctIVlrGat~q----------~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfa 435 (527)
T KOG0363|consen 366 CTIVLRGATQQ----------ILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFA 435 (527)
T ss_pred eEEEEecccHH----------HHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHH
Confidence 44556788887 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CC----CCCCCCCCcccccchh
Q psy2833 186 GG----PGLIPGGAEVFFGSVL 203 (216)
Q Consensus 186 ~~----~~~~~~~~gi~~~~~~ 203 (216)
.. |..++.|+|.=...++
T Consensus 436 rAL~qlPtiiaDNaG~dsaelv 457 (527)
T KOG0363|consen 436 RALRQLPTIIADNAGYDSAELV 457 (527)
T ss_pred HHHHhcchhhhccCCCCHHHHH
Confidence 84 5556777875444443
No 63
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.3e-09 Score=101.51 Aligned_cols=101 Identities=26% Similarity=0.269 Sum_probs=83.4
Q ss_pred hchhhHHHHHHhcC--CeE--EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHH
Q psy2833 91 LQDALHVARNIMLE--PKL--VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 166 (216)
Q Consensus 91 i~Dal~v~~~~~~~--~~v--V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L 166 (216)
+.|.-+.+-..+++ +++ +--||++|+ ..++.+|+++|||++++.++.+++++||||+.|+.+++.|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~tI~vrgate~----------~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L 411 (524)
T COG0459 342 TGDYDMEKLQERKAKAGGVATILVRGATEV----------ELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRL 411 (524)
T ss_pred ccchhhhhhhhhhhcCCCeEEEEECCccHh----------HHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHH
Confidence 55555555555554 444 448999999 8899999999999999999999999999999999999999
Q ss_pred HHhhhhcCC-ceEEEEeeccCC----CCCCCCCCcccccch
Q psy2833 167 SCFQDNLLG-RVVVTLGLHAGG----PGLIPGGAEVFFGSV 202 (216)
Q Consensus 167 ~~~a~~~~g-~~~~~i~~~~~~----~~~~~~~~gi~~~~~ 202 (216)
++++...+| .+|+++.+|+.+ |+.+++|+|. |+..
T Consensus 412 ~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~-d~~~ 451 (524)
T COG0459 412 REYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGL-DPIE 451 (524)
T ss_pred HhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 998655555 999999999984 6668899998 6653
No 64
>PTZ00114 Heat shock protein 60; Provisional
Probab=98.68 E-value=1.5e-08 Score=97.52 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=72.6
Q ss_pred CCeEEe--cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhh--hcCCceEE
Q psy2833 104 EPKLVP--GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQD--NLLGRVVV 179 (216)
Q Consensus 104 ~~~vV~--GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~--~~~g~~~~ 179 (216)
++++++ -||+++. .+++.+|+++|||+++..++.++ +|||||++|+.+|..|++++. ..++.+++
T Consensus 385 ~~~~~tI~i~G~t~~----------~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~ 453 (555)
T PTZ00114 385 SGGVAVIKVGGASEV----------EVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQRT 453 (555)
T ss_pred CCCeEEEEecCCCHH----------HHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHHH
Confidence 344444 8899998 79999999999999999999855 999999999999999999986 57899999
Q ss_pred EEeeccCC----CCCCCCCCcc
Q psy2833 180 TLGLHAGG----PGLIPGGAEV 197 (216)
Q Consensus 180 ~i~~~~~~----~~~~~~~~gi 197 (216)
++++|+.+ |+.+++|+|.
T Consensus 454 ~i~~~a~AL~~ip~~La~NaG~ 475 (555)
T PTZ00114 454 GVKIVRNALRLPTKQIAENAGV 475 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 99999984 6668899995
No 65
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.68 E-value=4.2e-09 Score=100.19 Aligned_cols=84 Identities=29% Similarity=0.391 Sum_probs=74.3
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. ..+|.+|+++|||+++..++.++++|||||++|+.++.+|++++.+.++.+|+++++|+.
T Consensus 364 TIllrG~t~~----------~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~ 433 (515)
T cd03338 364 TILVRGSNKL----------VLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFAD 433 (515)
T ss_pred EEEEeCCcHH----------HHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3336777887 799999999999999999999999999999999999999999988889999999999998
Q ss_pred C----CCCCCCCCcccccc
Q psy2833 187 G----PGLIPGGAEVFFGS 201 (216)
Q Consensus 187 ~----~~~~~~~~gi~~~~ 201 (216)
. |+.+++|+|+ |+.
T Consensus 434 al~~ip~~L~~NaG~-d~~ 451 (515)
T cd03338 434 ALEVIPYTLAENAGL-NPI 451 (515)
T ss_pred HHHHHHHHHHHHCCC-CHH
Confidence 4 6668889996 443
No 66
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=98.68 E-value=3.8e-09 Score=100.62 Aligned_cols=73 Identities=30% Similarity=0.496 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCccccc
Q psy2833 127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVFFG 200 (216)
Q Consensus 127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~~~ 200 (216)
.+++.+|+++|||+++..++.++++|||||++||.++.+|++++...++.+++++++|+.. |+.+++|+|+ |+
T Consensus 378 ~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~-d~ 454 (519)
T TIGR02339 378 VVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGL-DP 454 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC-CH
Confidence 7999999999999999999999999999999999999999999988899999999999984 6667889985 44
No 67
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=98.67 E-value=1.5e-08 Score=96.96 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=71.1
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. ..++.+|+++|||+++++++.++ +|||||++|+.++..|++ +...++.+++++++|+..
T Consensus 377 I~irG~t~~----------~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~A 444 (524)
T TIGR02348 377 IKVGAATET----------EMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRA 444 (524)
T ss_pred EEecCCCHH----------HHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHH
Confidence 568999998 89999999999999999999885 999999999999999998 778899999999999984
Q ss_pred ----CCCCCCCCcc
Q psy2833 188 ----PGLIPGGAEV 197 (216)
Q Consensus 188 ----~~~~~~~~gi 197 (216)
|+.+++|+|+
T Consensus 445 L~~ip~~La~NaG~ 458 (524)
T TIGR02348 445 LEAPLRQIAENAGK 458 (524)
T ss_pred HHHHHHHHHHhCCC
Confidence 6668889988
No 68
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=98.64 E-value=6.8e-09 Score=99.35 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=72.6
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. ..+|.+|++.|||+++..++.++++|||||++||.++..|++++...++.++++++.|+..
T Consensus 367 I~lrG~t~~----------~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~a 436 (531)
T TIGR02346 367 IILRGSTKN----------LLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEA 436 (531)
T ss_pred EEEECCCHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 337788888 7999999999999999999999999999999999999999999888899999999999984
Q ss_pred ----CCCCCCCCcc
Q psy2833 188 ----PGLIPGGAEV 197 (216)
Q Consensus 188 ----~~~~~~~~gi 197 (216)
|+.+++|+|+
T Consensus 437 L~~ip~~L~~NaG~ 450 (531)
T TIGR02346 437 FEIIPRTLAENAGL 450 (531)
T ss_pred HHHHHHHHHHhCCC
Confidence 6667889996
No 69
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=98.63 E-value=9.3e-09 Score=98.77 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=73.1
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. .+++.+|+++|||+++..++.++ +|||||++|+.+|..|++++ ..++.+|+++++|+.
T Consensus 377 TI~irG~t~~----------~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i~~~a~ 444 (542)
T PRK12849 377 VIKVGAATEV----------ELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGVEIVRR 444 (542)
T ss_pred EEEeCCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHHHHHHH
Confidence 3448899998 89999999999999999999885 99999999999999999999 899999999999998
Q ss_pred C----CCCCCCCCcccccc
Q psy2833 187 G----PGLIPGGAEVFFGS 201 (216)
Q Consensus 187 ~----~~~~~~~~gi~~~~ 201 (216)
. |+.+++|+|+ ++.
T Consensus 445 Al~~ip~~La~NaG~-d~~ 462 (542)
T PRK12849 445 ALEAPLRQIAENAGL-DGS 462 (542)
T ss_pred HHHHHHHHHHHHCCC-CHH
Confidence 4 6678899994 544
No 70
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.62 E-value=8.4e-09 Score=97.34 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=72.6
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-||+++. ..+|.+|+++|||+++..++.++++|||||++|+.++..|++++.+.++.++++++.|+..
T Consensus 321 lrG~t~~----------~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~ 390 (472)
T cd03341 321 LRGATQN----------ILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFE 390 (472)
T ss_pred EECCCHH----------HHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 6677777 7999999999999999999999999999999999999999999888899999999999984
Q ss_pred --CCCCCCCCcccccc
Q psy2833 188 --PGLIPGGAEVFFGS 201 (216)
Q Consensus 188 --~~~~~~~~gi~~~~ 201 (216)
|+.+++|+|+ |+.
T Consensus 391 ~ip~~L~~NaG~-d~~ 405 (472)
T cd03341 391 VVPRTLAENAGL-DAT 405 (472)
T ss_pred HHHHHHHHHCCC-CHH
Confidence 6668899996 444
No 71
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=98.60 E-value=1.6e-08 Score=97.05 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=71.6
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. ..++.+|+++|||+++..++.++ +|||||++|+.+|..|++++.. ++.+++++++|+.
T Consensus 378 tI~irG~t~~----------~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~~~~a~ 445 (541)
T PRK12851 378 VIRVGASTEV----------EVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGVEIVRR 445 (541)
T ss_pred EEEecCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Confidence 3558999998 89999999999999999999885 9999999999999999999876 8999999999998
Q ss_pred C----CCCCCCCCcc
Q psy2833 187 G----PGLIPGGAEV 197 (216)
Q Consensus 187 ~----~~~~~~~~gi 197 (216)
. |+.+++|+|+
T Consensus 446 AL~~ip~~La~NaG~ 460 (541)
T PRK12851 446 ALEAPVRQIAENAGA 460 (541)
T ss_pred HHHHHHHHHHHhcCC
Confidence 4 6668889998
No 72
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=98.60 E-value=8e-09 Score=98.52 Aligned_cols=71 Identities=27% Similarity=0.487 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCcc
Q psy2833 127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEV 197 (216)
Q Consensus 127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi 197 (216)
.++|.+|+++|||+++..++.++.++||||++|+.++.+|++++...++.+++++++|+.. |+.+++|+|.
T Consensus 377 ~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~ 451 (522)
T cd03340 377 FIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGF 451 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999999999999999999988899999999999984 6667889996
No 73
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=98.60 E-value=1.7e-08 Score=96.47 Aligned_cols=79 Identities=28% Similarity=0.394 Sum_probs=71.4
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. ..++.+|+++|||+++..++.++ +|||||++|+.++..|++++. .++.+++++++++.
T Consensus 375 TI~irG~t~~----------~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~~~~a~ 442 (520)
T cd03344 375 VIKVGGATEV----------ELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGIEIVRR 442 (520)
T ss_pred EEEEecCcHH----------HHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence 4448889998 89999999999999999999885 999999999999999999998 99999999999998
Q ss_pred C----CCCCCCCCcc
Q psy2833 187 G----PGLIPGGAEV 197 (216)
Q Consensus 187 ~----~~~~~~~~gi 197 (216)
+ |+.+++|+|.
T Consensus 443 Al~~ip~~La~NaG~ 457 (520)
T cd03344 443 ALEAPLRQIAENAGV 457 (520)
T ss_pred HHHHHHHHHHHhcCC
Confidence 4 6667889995
No 74
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=98.59 E-value=3e-08 Score=95.34 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=71.2
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||+++. ..++.+|+++|||+++..++.+ .+|||||++|+.++..|+++ ...++.+|+++++|+.
T Consensus 378 tI~irG~t~~----------~l~E~er~i~DAl~~~k~a~~~-g~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~ 445 (544)
T PRK12850 378 VIRVGGATEV----------EVKEKKDRVDDALHATRAAVEE-GIVPGGGVALLRARSALRGL-KGANADETAGIDIVRR 445 (544)
T ss_pred EEEECCCcHH----------HHHHHHHHHHHHHHHHHHHHhc-CCccCCcHHHHHHHHHHHhc-cCCChHHHHHHHHHHH
Confidence 3448999998 8999999999999999999988 59999999999999999998 6789999999999998
Q ss_pred C----CCCCCCCCcc
Q psy2833 187 G----PGLIPGGAEV 197 (216)
Q Consensus 187 ~----~~~~~~~~gi 197 (216)
+ |+.+++|+|+
T Consensus 446 Al~~ip~~La~NaG~ 460 (544)
T PRK12850 446 ALEEPLRQIATNAGF 460 (544)
T ss_pred HHHHHHHHHHHhcCC
Confidence 4 6668889988
No 75
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=98.56 E-value=1.8e-08 Score=96.73 Aligned_cols=78 Identities=24% Similarity=0.383 Sum_probs=71.3
Q ss_pred EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC
Q psy2833 108 VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG 187 (216)
Q Consensus 108 V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~ 187 (216)
+.-||+++. ..++.+|+++|||++++.++.++ +|||||++|+.++..|+++ ...++.+|+++++|+..
T Consensus 378 I~irG~t~~----------~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~~~a~A 445 (542)
T PRK00013 378 IKVGAATEV----------EMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGINIVLRA 445 (542)
T ss_pred EEecCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHH
Confidence 668999999 89999999999999999999885 9999999999999999998 77899999999999984
Q ss_pred ----CCCCCCCCcc
Q psy2833 188 ----PGLIPGGAEV 197 (216)
Q Consensus 188 ----~~~~~~~~gi 197 (216)
|+.+++|+|+
T Consensus 446 l~~ip~~La~NaG~ 459 (542)
T PRK00013 446 LEAPLRQIAENAGL 459 (542)
T ss_pred HHHHHHHHHHHcCC
Confidence 6668899996
No 76
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=98.55 E-value=1.8e-08 Score=96.73 Aligned_cols=84 Identities=24% Similarity=0.329 Sum_probs=73.5
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||++|. .+++.+|+++||++++..++.++ +|||||++|+.++..|++++.. ++.+|+++++|+.
T Consensus 378 tI~irG~t~~----------~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i~~~a~ 445 (545)
T PRK12852 378 VIRVGGATEV----------EVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGINIVLK 445 (545)
T ss_pred EEEECCCCHH----------HHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHHHHHHH
Confidence 3558999999 89999999999999999999885 9999999999999999999877 8889999999998
Q ss_pred C----CCCCCCCCcccccch
Q psy2833 187 G----PGLIPGGAEVFFGSV 202 (216)
Q Consensus 187 ~----~~~~~~~~gi~~~~~ 202 (216)
. |+.+++|+|.--..+
T Consensus 446 AL~~ip~~La~NaG~d~~~v 465 (545)
T PRK12852 446 ALEAPIRQIAENAGVEGSIV 465 (545)
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 4 666889999844333
No 77
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=98.55 E-value=1.4e-08 Score=95.23 Aligned_cols=72 Identities=31% Similarity=0.455 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC----CCCCCCCCccc
Q psy2833 127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG----PGLIPGGAEVF 198 (216)
Q Consensus 127 ~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi~ 198 (216)
.+++.+|+++|||+++..++.++.++||||++|+.++..|++++.+.++.++++++.|+.. |+.+++|+|+-
T Consensus 324 ~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d 399 (464)
T cd00309 324 ELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLD 399 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999999999999999999988999999999999984 66678888853
No 78
>PRK14104 chaperonin GroEL; Provisional
Probab=98.48 E-value=1e-07 Score=91.66 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=69.9
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-||++|. .+++.+|+++|||+++..++.++ ++||||++|+.++..|+++. ..++.++++++.|+.
T Consensus 378 tI~irG~t~~----------~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i~~~a~ 445 (546)
T PRK14104 378 VIRVGGATEV----------EVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGVEIVRK 445 (546)
T ss_pred EEEecCCCHH----------HHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHHHHHHH
Confidence 4458999999 89999999999999999999886 99999999999999999884 457899999999988
Q ss_pred ----CCCCCCCCCcc
Q psy2833 187 ----GPGLIPGGAEV 197 (216)
Q Consensus 187 ----~~~~~~~~~gi 197 (216)
.|+.+++|+|+
T Consensus 446 Al~~ip~~La~NaG~ 460 (546)
T PRK14104 446 ALSAPARQIAINAGE 460 (546)
T ss_pred HHHhhHHHHHHhCCC
Confidence 36668899996
No 79
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=98.40 E-value=1.6e-07 Score=91.28 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=69.2
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEE-Eeecc
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVT-LGLHA 185 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~-i~~~~ 185 (216)
++..||++|. .++|.+|+++|||++++.++.++ +|||||++|+.++..|++++...++.+|+. ++.+.
T Consensus 432 iI~vgG~t~~----------~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~ 500 (600)
T PLN03167 432 VIQVGAQTET----------ELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVK 500 (600)
T ss_pred EEEecCCcHH----------HHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 3448999998 78999999999999999999988 999999999999999999988888888854 55544
Q ss_pred C----CCCCCCCCCccc
Q psy2833 186 G----GPGLIPGGAEVF 198 (216)
Q Consensus 186 ~----~~~~~~~~~gi~ 198 (216)
. -|+.+++|+|+=
T Consensus 501 ~Al~~p~r~La~NAG~d 517 (600)
T PLN03167 501 RALSYPLKLIAKNAGVN 517 (600)
T ss_pred HHHhcchhhhhhcCCCC
Confidence 3 357789999983
No 80
>KOG0362|consensus
Probab=98.36 E-value=1.1e-07 Score=89.13 Aligned_cols=84 Identities=23% Similarity=0.383 Sum_probs=75.6
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCC--
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGG-- 187 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~-- 187 (216)
-+||+.. .++.++|++.|++...+....+++.+||.|++|+.++..|.+|+...+|.+||++..|+.+
T Consensus 372 LRgst~s----------~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale 441 (537)
T KOG0362|consen 372 LRGATQS----------ILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALE 441 (537)
T ss_pred Ecccchh----------hHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhc
Confidence 5677776 8999999999999999999999999999999999999999999999999999999999995
Q ss_pred --CCCCCCCCcccccchh
Q psy2833 188 --PGLIPGGAEVFFGSVL 203 (216)
Q Consensus 188 --~~~~~~~~gi~~~~~~ 203 (216)
|+.+++|+|+.-.=++
T Consensus 442 ~~PktlaEnagl~~~evi 459 (537)
T KOG0362|consen 442 VLPKTLAENAGLAVTEVI 459 (537)
T ss_pred cccHhHHHhcCCcHHHHH
Confidence 7778899998654433
No 81
>KOG0364|consensus
Probab=98.27 E-value=1.1e-06 Score=81.59 Aligned_cols=97 Identities=40% Similarity=0.506 Sum_probs=82.1
Q ss_pred hchhhHHHHHHhcCCeE--EecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH
Q psy2833 91 LQDALHVARNIMLEPKL--VPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC 168 (216)
Q Consensus 91 i~Dal~v~~~~~~~~~v--V~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~ 168 (216)
+.|--..+...|++|+. +.++|.+.- +++|.+|.+.||+.+-++++..++.+|||||+||.+|+.|++
T Consensus 351 ~gdeyf~f~~~Ck~pkaCtillrg~skd----------il~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~q 420 (527)
T KOG0364|consen 351 IGDEYFTFFTDCKEPKACTILLRGPSKD----------ILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQ 420 (527)
T ss_pred cCchhhhhhhhcCCCcceEEEeccCchh----------HHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHH
Confidence 45667777888888854 448888777 899999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEeeccCC----CCCCCCCCcc
Q psy2833 169 FQDNLLGRVVVTLGLHAGG----PGLIPGGAEV 197 (216)
Q Consensus 169 ~a~~~~g~~~~~i~~~~~~----~~~~~~~~gi 197 (216)
.+....|.+++-..+.+++ |+.+.+|.|.
T Consensus 421 ksa~~~GVekwPY~Ava~AlEviPrtliqncGa 453 (527)
T KOG0364|consen 421 KSALMTGVEKWPYGAVAGALEVIPRTLIQNCGA 453 (527)
T ss_pred HHhhccchhccchhhhhcCceeccHHHHhhcCc
Confidence 9999999998888888775 4444566665
No 82
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=98.08 E-value=5.2e-07 Score=84.26 Aligned_cols=81 Identities=30% Similarity=0.477 Sum_probs=70.8
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
.+.-+|.++. ..++.+++++|||.++..++.++.++||||++|+.+++.|++++.+.++.+++++++++.
T Consensus 333 Till~g~t~~----------~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~ 402 (485)
T PF00118_consen 333 TILLRGPTEF----------ELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFAD 402 (485)
T ss_dssp EEEEEESSHH----------HHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH
T ss_pred EEEeccccch----------hHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHH
Confidence 3336677777 789999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CCCCCCCCcc
Q psy2833 187 G----PGLIPGGAEV 197 (216)
Q Consensus 187 ~----~~~~~~~~gi 197 (216)
. |..+..|+|.
T Consensus 403 aL~~ip~~L~~NaG~ 417 (485)
T PF00118_consen 403 ALESIPKTLAQNAGL 417 (485)
T ss_dssp HTTHHHHHHHHHTTS
T ss_pred HHHHhhhhhhhccCC
Confidence 5 4445677776
No 83
>KOG0360|consensus
Probab=97.96 E-value=1.6e-06 Score=81.11 Aligned_cols=70 Identities=33% Similarity=0.466 Sum_probs=61.9
Q ss_pred HHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 117 AVSHVSASKD--LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 117 ~ls~~L~~~~--~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
..|..|+.-. ..+|.+|+.+|||++++++|..+..+||||++|..++..|+.++.+...++|.++-.|+.
T Consensus 374 ~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~ 445 (545)
T KOG0360|consen 374 SASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAA 445 (545)
T ss_pred eeeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence 3444555544 899999999999999999999999999999999999999999999999999998887774
No 84
>KOG0230|consensus
Probab=97.86 E-value=4.1e-06 Score=86.78 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=72.6
Q ss_pred hhhhcCceeeeeecccCc---ceeceEEEEEEC-----CeEEEEEeecCCCceEEEEEeCCChhhHHHHHHHhchhhHHH
Q psy2833 27 ENIQAGKYIDSSIVTLNH---WLCSSQDACLLG-----DEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVA 98 (216)
Q Consensus 27 ~~i~~G~~i~~sl~~~~~---g~c~~v~~~~ig-----~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~ersi~Dal~v~ 98 (216)
+.=+|||.|+++++.++. |+|+.|+++.+- .+.++||++|+.+.+|||+|||.....|.++++-++-.+...
T Consensus 481 IsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aa 560 (1598)
T KOG0230|consen 481 ISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAA 560 (1598)
T ss_pred HHHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 333699999999999876 999999998775 457889999999999999999999999999999999888888
Q ss_pred HHHhcCCeEEecCC
Q psy2833 99 RNIMLEPKLVPGGG 112 (216)
Q Consensus 99 ~~~~~~~~vV~GGG 112 (216)
.+..-+..++.--|
T Consensus 561 y~l~LE~SflaDe~ 574 (1598)
T KOG0230|consen 561 YHLALETSFLADEG 574 (1598)
T ss_pred HHHHHhhhhhhccC
Confidence 77766555554333
No 85
>KOG0356|consensus
Probab=97.62 E-value=0.00012 Score=69.75 Aligned_cols=121 Identities=20% Similarity=0.144 Sum_probs=100.0
Q ss_pred ceEEEEEeCCChhhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHH
Q psy2833 70 KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD-----LLNETERNLQDALHVARN 144 (216)
Q Consensus 70 ~~~TIllrG~t~~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~-----~~~e~~ra~adAL~vIp~ 144 (216)
...+|-+-|.|+..++|-+..+.||+++.+.++.++ +|||||.....++..|.+.. ..+-....+++||..-..
T Consensus 389 gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~ 467 (550)
T KOG0356|consen 389 GVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQ 467 (550)
T ss_pred CeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHH
Confidence 589999999999999999999999999999998887 89999999999999998875 455568899999999999
Q ss_pred HHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccCCCCCCCCCCcccccchhhh
Q psy2833 145 IMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGV 205 (216)
Q Consensus 145 ~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~~~~~~~~~~gi~~~~~~~~ 205 (216)
+++.|+++-|.-..+- +.+ +.||.|+-.+++.|+ -++|+-|+..+=.
T Consensus 468 ~IakNAGvdg~~vv~K-----v~~--------~~~gyda~~~ey~dl-v~~GiidP~kVvr 514 (550)
T KOG0356|consen 468 TIAKNAGVDGSVVVEK-----VLN--------DDYGYDAAKGEYVDL-VEAGIIDPTKVVR 514 (550)
T ss_pred HHHHhcCCchHHHHHH-----HHh--------hhhhhhhhcccHHHH-HhccCCChHHHHH
Confidence 9999997644332221 121 279999999999876 6799999985533
No 86
>KOG0359|consensus
Probab=97.08 E-value=0.00012 Score=68.31 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=74.3
Q ss_pred hchhhHHHHHHhcCCeEEe--cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHH
Q psy2833 91 LQDALHVARNIMLEPKLVP--GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSC 168 (216)
Q Consensus 91 i~Dal~v~~~~~~~~~vV~--GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~ 168 (216)
+.+....|..-+.+|+-++ -.|-... -...+..++.|+|..+.++|.++.++||+|+.|..++.+|+.
T Consensus 347 lGEEkfTFIE~~~~p~S~TiLikgpnkh----------t~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~ 416 (520)
T KOG0359|consen 347 LGEEKFTFIEKCNNPSSVTILIKGPNKH----------TITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRE 416 (520)
T ss_pred ccceeeEeeecCCCCcceEEEEeCCccc----------hHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHH
Confidence 3334444555556665554 4455444 455678889999999999999999999999999999999998
Q ss_pred hhhhcCCceEEEEeeccCC----CCCCCCCCc
Q psy2833 169 FQDNLLGRVVVTLGLHAGG----PGLIPGGAE 196 (216)
Q Consensus 169 ~a~~~~g~~~~~i~~~~~~----~~~~~~~~g 196 (216)
...+.+|+.+.|+.+|+.. |..++.|.|
T Consensus 417 ~k~~vkgra~~g~~afa~all~ipk~La~nsg 448 (520)
T KOG0359|consen 417 SKKSVKGRAYLGVKAFANALLVIPKTLAKNSG 448 (520)
T ss_pred hhhccCchhhhhHHHHHhhhhhhhHHHHHhcC
Confidence 8888999999999999985 555555555
No 87
>KOG0356|consensus
Probab=93.42 E-value=0.16 Score=48.82 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=59.2
Q ss_pred EEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhhcCCceEEEEeeccC
Q psy2833 107 LVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAG 186 (216)
Q Consensus 107 vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~~~g~~~~~i~~~~~ 186 (216)
++--||.+|.+ ..+=...+.|||.+.+..+.++ ++||||..-+.++..|.+.....+..++.|++..-.
T Consensus 392 vi~vGg~se~E----------v~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~ 460 (550)
T KOG0356|consen 392 VIKVGGHSEVE----------VNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKK 460 (550)
T ss_pred EEEecCcchhh----------hhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHH
Confidence 45589999994 4455667899999999998766 899999999999888877654334444555666555
Q ss_pred C---C-CCCCCCCcccccch
Q psy2833 187 G---P-GLIPGGAEVFFGSV 202 (216)
Q Consensus 187 ~---~-~~~~~~~gi~~~~~ 202 (216)
. | ..++.|+|+.-..+
T Consensus 461 Al~~P~~~IakNAGvdg~~v 480 (550)
T KOG0356|consen 461 ALRLPAQTIAKNAGVDGSVV 480 (550)
T ss_pred HHhhhHHHHHHhcCCchHHH
Confidence 3 2 22466777654443
No 88
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=72.68 E-value=4 Score=35.75 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=27.8
Q ss_pred cCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcCccc
Q psy2833 110 GGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIMLEPKLV 152 (216)
Q Consensus 110 GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~~N~~v 152 (216)
-+|+++. .+++++|+++||++++.++..+.+++
T Consensus 225 LRG~t~~----------~lde~eR~i~Dal~v~~~~~le~~~~ 257 (261)
T cd03334 225 LRGGDLE----------ELKKVKRVVEFMVFAAYHLKLETSFL 257 (261)
T ss_pred EECCCHH----------HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5666666 89999999999999999998887643
No 89
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=59.16 E-value=32 Score=28.50 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=26.3
Q ss_pred eEEecCCchhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q psy2833 106 KLVPGGGAVEMAVSHVSASKDLLNETERNLQDALHVARNIML 147 (216)
Q Consensus 106 ~vV~GGGa~E~~ls~~L~~~~~~~e~~ra~adAL~vIp~~L~ 147 (216)
..+.-+|+++. .+++.+|+++||+.++..++.
T Consensus 177 ~tIllrG~t~~----------~l~e~kr~l~dal~~~~~~~~ 208 (209)
T cd03333 177 ATILLRGATEV----------ELDEVKRSLHDALCAVRAAVE 208 (209)
T ss_pred EEEEEECCCHh----------HHHHHHHHHHHHHHHHHHHhh
Confidence 34446777777 789999999999999988875
No 90
>KOG2663|consensus
Probab=38.18 E-value=29 Score=31.01 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=24.5
Q ss_pred eEEEEEeCCChhhHHHHHHHhchhhHHHH
Q psy2833 71 ACTILLRGASKDLLNETERNLQDALHVAR 99 (216)
Q Consensus 71 ~~TIllrG~t~~~l~E~ersi~Dal~v~~ 99 (216)
-.||+|+|. +.+++++.|.++|-+.|++
T Consensus 120 rmTIVl~Gt-d~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 120 RMTIVLQGT-DGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred hceEEEecc-HHHHHHHHHHHHHhhhhhe
Confidence 349999994 7899999999999998875
No 91
>KOG2495|consensus
Probab=26.70 E-value=1.2e+02 Score=29.26 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=55.1
Q ss_pred ceEEEEEeCCCh--hhHHHHHHHhchhhHHHHHHhcC--------------CeEEecCCchhHHHHHHHhhhhhhhHHHH
Q psy2833 70 KACTILLRGASK--DLLNETERNLQDALHVARNIMLE--------------PKLVPGGGAVEMAVSHVSASKDLLNETER 133 (216)
Q Consensus 70 ~~~TIllrG~t~--~~l~E~ersi~Dal~v~~~~~~~--------------~~vV~GGGa~E~~ls~~L~~~~~~~e~~r 133 (216)
...|.=++|-.+ ++|.|++.+.+=-..++.+.-+- -.+|.|||=+=++.|..|+.| +.+...+
T Consensus 169 ~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Df-i~~Dl~k 247 (491)
T KOG2495|consen 169 EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADF-IPEDLRK 247 (491)
T ss_pred CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHH-HHHHHHH
Confidence 455666666544 36666654433322333222111 247779999999999999998 5555556
Q ss_pred HHHHHHHHHHHHHhcCcccCCCChhHHHHHHHHHHhhhh
Q psy2833 134 NLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDN 172 (216)
Q Consensus 134 a~adAL~vIp~~L~~N~~v~Ggga~E~~~s~~L~~~a~~ 172 (216)
-+.+.=+-+.-+|.+-. .+...|. -.+|.+||++
T Consensus 248 ~yp~l~~~i~vtLiEA~----d~iL~mF-dkrl~~yae~ 281 (491)
T KOG2495|consen 248 IYPELKKDIKVTLIEAA----DHILNMF-DKRLVEYAEN 281 (491)
T ss_pred hhhcchhheEEEeeccc----hhHHHHH-HHHHHHHHHH
Confidence 56555555544554432 2233333 3567777764
No 92
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=22.65 E-value=1.3e+02 Score=24.14 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=21.2
Q ss_pred hhHHHHHHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHH
Q psy2833 82 DLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVS 122 (216)
Q Consensus 82 ~~l~E~ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L 122 (216)
.+|||++|--+-...=++.....=..|.|.|+.-...+..|
T Consensus 84 ~mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAl 124 (140)
T PF07526_consen 84 SMLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALAL 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 46788887544333333322222234668877776444333
No 93
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=21.54 E-value=98 Score=30.22 Aligned_cols=38 Identities=26% Similarity=0.407 Sum_probs=27.9
Q ss_pred HHHhchhhHHHHHHhcCCeEEecCCchhHHHHHHHhhhh
Q psy2833 88 ERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSASKD 126 (216)
Q Consensus 88 ersi~Dal~v~~~~~~~~~vV~GGGa~E~~ls~~L~~~~ 126 (216)
+|.+.+|+..+++. +.|-+|.|||.-+......|+.++
T Consensus 216 ~~eL~~A~~lik~a-k~PlIvaGGGv~YS~A~~~L~af~ 253 (617)
T COG3962 216 ERELADAAALIKSA-KKPLIVAGGGVLYSGAREALRAFA 253 (617)
T ss_pred HHHHHHHHHHHHhc-CCCEEEecCceeechHHHHHHHHH
Confidence 45677888888764 789999999999885555554443
Done!