RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2833
(216 letters)
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 143 bits (364), Expect = 1e-40
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 56 GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
GDEYF +ITEC++PKACTILLRGASKD+LNE ERNLQDA+ VARNI+L PKLVPGGGA E
Sbjct: 311 GDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATE 370
Query: 116 MAVSH 120
MAVSH
Sbjct: 371 MAVSH 375
Score = 53.5 bits (129), Expect = 2e-08
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
PVLVL+ NTKR+SGRK QL NIQA K + I T
Sbjct: 1 PVLVLNQNTKRESGRKAQLGNIQAAKTVADVIRT 34
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 136 bits (345), Expect = 8e-38
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 54 LLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
+GDEYF + TEC++PKACTILLRGASKD+LNE ERNLQDA+ VARN++LEPKL+PGGGA
Sbjct: 350 KIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGA 409
Query: 114 VEMAVSHVSASK 125
EMAVS A K
Sbjct: 410 TEMAVSVYLAKK 421
Score = 52.0 bits (125), Expect = 5e-08
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
PVLVL+ NTKR+SGRK QL NIQA K + I T
Sbjct: 1 PVLVLNQNTKRESGRKAQLSNIQAAKAVADIIRT 34
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 104 bits (263), Expect = 2e-26
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+GDE + +I C+ K TILLRGA++ L+E ER+L DAL R + + +VPGGGA
Sbjct: 296 IGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAA 355
Query: 115 EMAVSHV 121
E+ +S
Sbjct: 356 EIELSKA 362
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 88.4 bits (220), Expect = 1e-20
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G++ +I C + K TILLRGA+ L+E ER ++DAL+ + + + +VPGGGA
Sbjct: 311 IGEDKTTFIEGCLSGKVATILLRGATDHELDELERAIEDALNAVKAALKDEGVVPGGGAA 370
Query: 115 EMAVSHV 121
E+ +S
Sbjct: 371 ELELSRA 377
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 88.5 bits (220), Expect = 2e-20
Identities = 29/65 (44%), Positives = 47/65 (72%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+GD+ ++ C+NPKA TILLRG ++ +++E ER L+DAL V + + + K+V GGGAV
Sbjct: 347 VGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAV 406
Query: 115 EMAVS 119
E+ ++
Sbjct: 407 EIELA 411
Score = 32.2 bits (74), Expect = 0.16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 9 VLVLSSNTKRDSGRKVQLENIQAGKYI 35
VL+L T+R SGR Q NI A K +
Sbjct: 1 VLILKEGTQRTSGRDAQRMNIAAAKAV 27
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 88.4 bits (220), Expect = 2e-20
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 35 IDSSIVTLNHWLCSSQDACLLGDEYFCYITECQN--PKACTILLRGASKDLLNETERNLQ 92
D + + L + GD + E + TIL+RGA++ L+E ER ++
Sbjct: 322 KDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIE 381
Query: 93 DALHVARNIMLEPKLVPGGGAVEMAVSH 120
DAL+V R + E K+VPGGGA E+ +
Sbjct: 382 DALNVVRAAVEEGKIVPGGGAAEIEAAL 409
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 84.0 bits (208), Expect = 6e-19
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G++ ++ C+NPKA TILLRG ++ +++E ER+LQDALHV + + + K+V GGGAV
Sbjct: 350 VGEDKMVFVEGCKNPKAVTILLRGGTEHVVDELERSLQDALHVVASALEDGKVVAGGGAV 409
Query: 115 EMAVS 119
E+ ++
Sbjct: 410 EIEIA 414
Score = 33.9 bits (78), Expect = 0.053
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 8 PVLVLSSNTKRDSGRKVQLENIQAGKYI 35
PV +L T+R GR Q NI A K +
Sbjct: 1 PVFILKEGTQRTKGRDAQRNNIAAAKAV 28
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
are involved in productive folding of proteins. They
share a common general morphology, a double toroid of 2
stacked rings, each composed of 7-9 subunits. There are
2 main chaperonin groups. The symmetry of type I is
seven-fold and they are found in eubacteria (GroEL) and
in organelles of eubacterial descent (hsp60 and RBP).
The symmetry of type II is eight- or nine-fold and they
are found in archea (thermosome), thermophilic bacteria
(TF55) and in the eukaryotic cytosol (CTT). Their
common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. This superfamily
also contains related domains from Fab1-like
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
that only contain the intermediate and apical domains.
Length = 209
Score = 77.1 bits (191), Expect = 1e-17
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLE 104
+G+E +I C+ KA TILLRGA++ L+E +R+L DAL R + E
Sbjct: 160 IGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 72.7 bits (179), Expect = 4e-15
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 55 LGDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
LGD IT +NP K TIL+RG++K +L+E ER+L DAL V R ++ + L+PGGGA
Sbjct: 345 LGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGA 404
Query: 114 VEMAVSH-VSASKDLLNETE----RNLQDALHV-----ARNIMLEP 149
E+ ++ +S L E R DAL V A N L P
Sbjct: 405 PEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNP 450
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 71.9 bits (177), Expect = 9e-15
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G E + T C K CTI+LRG ++ + E ER+L DA+ + R + +V GGGA+
Sbjct: 349 VGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAI 408
Query: 115 EMAVS 119
EM +S
Sbjct: 409 EMELS 413
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 71.7 bits (176), Expect = 9e-15
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G E + T C + K CTI+LRG ++ + E ER+L DA+ + R + K+V GGGA+
Sbjct: 351 IGSERYNLFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKNKKIVAGGGAI 410
Query: 115 EMAVS 119
EM +S
Sbjct: 411 EMELS 415
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
family, epsilon subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 526
Score = 71.2 bits (175), Expect = 2e-14
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 62 YITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
I C N KA TI +RG +K ++ E +R+L DAL V RN++ + ++V GGGA E++ S
Sbjct: 364 VIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCS 421
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 67.9 bits (166), Expect = 2e-13
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 62 YITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS-H 120
I +C+N KA TI +RG +K ++ E +R++ DAL V RN++ + ++V GGGA E++ S
Sbjct: 368 VIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKDSRIVYGGGAAEISCSLA 427
Query: 121 VSASKDLLNETE----RNLQDALHV-----ARNIMLEP 149
VS D + E R DAL A N L+P
Sbjct: 428 VSQEADKYSGVEQYAIRAFADALETIPMALAENSGLDP 465
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 66.2 bits (162), Expect = 9e-13
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 47 CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
C + ++G++ + C +ACTI+LRGAS +L+E ER+L DAL V + + +
Sbjct: 348 CDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTR 407
Query: 107 LVPGGGAVEMAVSH 120
+V GGG EM +++
Sbjct: 408 VVLGGGCSEMLMAN 421
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 65.4 bits (160), Expect = 2e-12
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 47 CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
C + ++G++ + +ACTI+LRGAS+ +L+E ER+L DAL V + + +
Sbjct: 336 CKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTR 395
Query: 107 LVPGGGAVEMAVSHVSASKDLLNETE 132
+V GGG EM ++ A ++L +T
Sbjct: 396 VVLGGGCSEMLMAK--AVEELAKKTP 419
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 61.1 bits (149), Expect = 4e-11
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
LG+E + +I +NPK+CTIL++G + + + + ++D L +N + + +VPG GA
Sbjct: 313 LGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAF 372
Query: 115 EMAVS 119
E+A+
Sbjct: 373 EVALY 377
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 60.9 bits (148), Expect = 5e-11
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G+E + +I E +NPK+CTIL++G + + + + ++D L +N + + +VPG GA
Sbjct: 356 IGEEKYTFIEEVKNPKSCTILIKGPNDHTIAQIKDAVRDGLRAVKNAIEDKCVVPGAGAF 415
Query: 115 EMAVS 119
E+A
Sbjct: 416 EIAAY 420
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 60.6 bits (147), Expect = 7e-11
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 47 CSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPK 106
C + ++G++ + + +ACTI+LRGA++ +L+E ER+L DAL V + E +
Sbjct: 336 CDLIEEIMIGEDKLLKFSGVKAGEACTIVLRGATQQILDEAERSLHDALCVLSQTVKESR 395
Query: 107 LVPGGGAVEMAVSH 120
V GGG EM +S
Sbjct: 396 TVLGGGCAEMLMSK 409
Score = 39.5 bits (92), Expect = 7e-04
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 164
A++ +L+E ER+L DAL V + E + V GGG EM +S
Sbjct: 368 ATQQILDEAERSLHDALCVLSQTVKESRTVLGGGCAEMLMSK 409
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 59.8 bits (145), Expect = 1e-10
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 63 ITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 119
IT QN K T+++RG++K +++E ER+L DAL V R ++ + L+ GGGA E+ ++
Sbjct: 354 ITGIQNAGKTVTVVVRGSNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIA 411
Score = 41.7 bits (98), Expect = 2e-04
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 163
++K +++E ER+L DAL V R ++ + L+ GGGA E+ ++
Sbjct: 371 SNKLVIDEAERSLHDALCVIRCLVKKRGLIAGGGAPEIEIA 411
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 59.6 bits (145), Expect = 1e-10
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+GD+ I + + +I+LRGA+ +L+E ER+L DAL V + + +VPGGGAV
Sbjct: 348 IGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAV 407
Query: 115 EMAVS 119
E A+S
Sbjct: 408 ETALS 412
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 59.5 bits (145), Expect = 1e-10
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 55 LGDEYFCYITEC-QNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
+GD + ++ K TI+LRGA++++L++ ER + D ++V +++ + + VPG GA
Sbjct: 299 IGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGA 358
Query: 114 VEMAVSH 120
E+ ++
Sbjct: 359 TEIELAK 365
Score = 42.6 bits (101), Expect = 7e-05
Identities = 12/42 (28%), Positives = 29/42 (69%)
Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 164
A++++L++ ER + D ++V +++ + + VPG GA E+ ++
Sbjct: 324 ATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAK 365
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+ D+ I + + +I+LRGA+ +L+E ER+L DAL V + + +VPGGGAV
Sbjct: 352 IADDECILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAV 411
Query: 115 EMAVS 119
E A+S
Sbjct: 412 EAALS 416
Score = 41.6 bits (98), Expect = 1e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 127 LLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVS 163
+L+E ER+L DAL V + + +VPGGGAVE A+S
Sbjct: 380 MLDEMERSLHDALCVVKRTLESNSVVPGGGAVEAALS 416
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 52.0 bits (125), Expect = 5e-08
Identities = 18/56 (32%), Positives = 38/56 (67%)
Query: 65 ECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 120
E + + TI+LRG++K+LL++ ER + D ++V + ++ + + +PG GA E+ ++
Sbjct: 358 ENGDSRISTIILRGSTKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELAS 413
Score = 39.3 bits (92), Expect = 8e-04
Identities = 12/42 (28%), Positives = 29/42 (69%)
Query: 123 ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAVSH 164
++K+LL++ ER + D ++V + ++ + + +PG GA E+ ++
Sbjct: 372 STKNLLDDIERAIDDGVNVVKALVKDGRFLPGAGATEIELAS 413
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic
phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase
Fab1. Fab1p is important for vacuole size regulation,
presumably by modulating PtdIns(3,5)P2 effector
activity. In the human homolog p235/PIKfyve deletion of
this domain leads to loss of catalytic activity. However
no exact function this domain has been defined. In
general, chaperonins are involved in productive folding
of proteins.
Length = 261
Score = 39.1 bits (92), Expect = 7e-04
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 60 FCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLE 104
+ C CTILLRG + L + +R ++ + A ++ LE
Sbjct: 209 LMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLE 253
>gnl|CDD|183817 PRK12892, PRK12892, allantoate amidohydrolase; Reviewed.
Length = 412
Score = 31.2 bits (71), Expect = 0.36
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 153 PGGGAVEMAVSHVSSCFQDNLLGRVVVTLG---LHAGGPGLIPGGAEVFF 199
G A EM + + + G VVT+G L G P +IPG E F
Sbjct: 240 AGLAAAEMIAAIDEHFPR--VCGPAVVTVGRVALDPGSPSIIPGRVEFSF 287
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb
receptors, which are metabotropic transmembrane
receptors for gamma-aminobutyric acid (GABA).
Ligand-binding domain of GABAb receptors, which are
metabotropic transmembrane receptors for
gamma-aminobutyric acid (GABA). GABA is the major
inhibitory neurotransmitter in the mammalian CNS and,
like glutamate and other transmitters, acts via both
ligand gated ion channels (GABAa receptors) and
G-protein coupled receptors (GABAb). GABAa receptors are
members of the ionotropic receptor superfamily which
includes alpha-adrenergic and glycine receptors. The
GABAb receptor is a member of a receptor superfamily
which includes the mGlu receptors. The GABAb receptor is
coupled to G alpha_i proteins, and activation causes a
decrease in calcium, an increase in potassium membrane
conductance, and inhibition of cAMP formation. The
response is thus inhibitory and leads to
hyperpolarization and decreased neurotransmitter
release, for example.
Length = 350
Score = 30.7 bits (70), Expect = 0.56
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 13/67 (19%)
Query: 113 AVEMAVSHVSASKDLLNETE-----RNLQ----DALHVARNIMLEPKLV----PGGGAVE 159
A+EMA+ V+A +L R+ + A A +++ +V P +V
Sbjct: 20 AIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLENKPVVAIIGPQCSSVA 79
Query: 160 MAVSHVS 166
V+ V+
Sbjct: 80 EFVAEVA 86
>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2
domain [General function prediction only].
Length = 1227
Score = 30.1 bits (68), Expect = 0.90
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 16 TKRDSGRKVQLENIQAGKYIDSSIVTLNHWLCSSQD 51
+++S KV ++Q+GK I + TL + + D
Sbjct: 636 DRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDRTLD 671
>gnl|CDD|143494 cd06820, PLPDE_III_LS_D-TA_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzymes, Low Specificity D-Threonine
Aldolase-like. This subfamily is composed of
uncharacterized bacterial proteins with similarity to
low specificity D-threonine aldolase (D-TA), which is a
fold type III PLP-dependent enzyme that catalyzes the
interconversion between D-threonine/D-allo-threonine and
glycine plus acetaldehyde. Both PLP and divalent cations
(eg. Mn2+) are required for catalytic activity. Low
specificity D-TAs show similarity to bacterial alanine
racemase (AR), which contains an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain.
AR exists as homodimers with active sites that lie at
the interface between the TIM barrel domain of one
subunit and the beta-sandwich domain of the other
subunit. Based on its similarity to AR, it is possible
that low specificity D-TAs also form dimers in solution.
Experimental data show that the monomeric form of low
specificity D-TAs exhibit full catalytic activity.
Length = 353
Score = 28.0 bits (63), Expect = 3.7
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 93 DALHVARNIMLEPKLVPGG-----GAVEMAVSHVSASKDLLNETERNLQDALHVARNIML 147
DA+ +AR I P L G G + A+ D E E L A + L
Sbjct: 142 DAVALARAIASAPGLRFRGIFTYPGHSYAPGALEEAAAD---EAEALLAAAGILEE-AGL 197
Query: 148 EPKLVPGGGAVEMAVSH 164
EP +V GG + SH
Sbjct: 198 EPPVVSGGSTPTLWRSH 214
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 27.8 bits (62), Expect = 3.9
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 91 LQDALHVARNIMLEPKLV----PGGGAVEMAVSHVSASKDLLNETERNLQDA-------L 139
+Q L +ARN++ P+LV P GG + VS + DLL R L A L
Sbjct: 156 MQQRLQIARNLVTRPRLVFMDEPTGG---LDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212
Query: 140 HVARNIMLEPKLVPGGGAVE 159
VAR + ++ G VE
Sbjct: 213 AVARLLADRLMVMKQGQVVE 232
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 27.6 bits (61), Expect = 6.3
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 146 MLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGV 205
++ P P GAV + NLLGR+ L A L A G + +
Sbjct: 158 LVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLR---AASKGGLISFL 214
Query: 206 RGALSLVR 213
G+ S R
Sbjct: 215 SGSSSAFR 222
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 27.2 bits (61), Expect = 7.0
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 72 CTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
I + GAS+ +NE + ++DAL+ R +E +VPGGG
Sbjct: 389 AVIKVGGASEVEVNEKKDRIEDALNATRA-AVEEGIVPGGGV 429
>gnl|CDD|204544 pfam10712, NAD-GH, NAD-specific glutamate dehydrogenase. The
members of this are annotated as being NAD-specific
glutamate dehydrogenase encoded in antisense gene pair
with DnaK-J. However, this could not be confirmed.
Length = 574
Score = 27.3 bits (61), Expect = 7.5
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 161 AVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGV 205
+ + LLGRV LGL G L V G + GV
Sbjct: 20 VGVDLVAVLFQRLLGRVDQALGLVLGLDQLAAL--LVLLGVLFGV 62
>gnl|CDD|219345 pfam07243, Phlebovirus_G1, Phlebovirus glycoprotein G1. This
family consists of several Phlebovirus glycoprotein G1
sequences. Members of the Bunyaviridae family acquire an
envelope by budding through the lipid bilayer of the
Golgi complex. The budding compartment is thought to be
determined by the accumulation of the two heterodimeric
membrane glycoproteins G1 and G2 in the Golgi.
Length = 527
Score = 27.1 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 48 SSQDACLLGDEYFCYITEC--QNPKACTILLRGA 79
SS C GDEYFC C P+A I G+
Sbjct: 246 SSAKKCS-GDEYFCSKYPCETAYPEAHCIHAPGS 278
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 27.1 bits (60), Expect = 8.4
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 103 LEPKLVPGGGAVEMAVSHVSASKDL-LNETERNLQDALHVARNIMLEPKLVPGGG-AVEM 160
L+ +L G V AV V + ++ + E + ++DAL+ R ++ +VPGGG A+
Sbjct: 365 LQERLAKLAGGV--AVIRVGGATEVEVKEKKDRVEDALNATR-AAVQEGIVPGGGVALLR 421
Query: 161 AVSHVSSCFQDN 172
A V DN
Sbjct: 422 AKKAVGRINNDN 433
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 26.7 bits (59), Expect = 9.5
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 135 LQDALHVARNIMLEPKLV----PGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHA 185
+Q L +ARN++ P+LV P GG + VS V + D LL +V LGL
Sbjct: 153 MQQRLQIARNLVTRPRLVFMDEPTGG---LDVS-VQARLLD-LLRGLVRDLGLAV 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,674,480
Number of extensions: 983369
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's gapped: 813
Number of HSP's successfully gapped: 68
Length of query: 216
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 123
Effective length of database: 6,812,680
Effective search space: 837959640
Effective search space used: 837959640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)