RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2833
(216 letters)
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 119 bits (302), Expect = 8e-32
Identities = 48/66 (72%), Positives = 61/66 (92%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+GDEYF +ITEC++PKACTILLRGASK++L+E ERNLQDA+ V RN++L+P+LVPGGGA
Sbjct: 343 IGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGAS 402
Query: 115 EMAVSH 120
EMAV+H
Sbjct: 403 EMAVAH 408
Score = 34.8 bits (81), Expect = 0.016
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 15 NTKRDSGRKVQLENIQAGKYIDSSIVT 41
NTKR+SGRKVQ NI A K I I T
Sbjct: 1 NTKRESGRKVQSGNINAAKTIADIIRT 27
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 119 bits (300), Expect = 1e-31
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G E + + T C K CTI+LRG ++ + ETER+L DA+ + R + +V GGGA+
Sbjct: 344 IGGERYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAI 403
Query: 115 EMAVS 119
EM +S
Sbjct: 404 EMELS 408
Score = 31.7 bits (73), Expect = 0.16
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 15 NTKRDSGRKVQLENIQAGKYIDSSIVT 41
T G + NI A + I ++ T
Sbjct: 3 GTDSSQGIPQLVSNISACQVIAEAVRT 29
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 119 bits (300), Expect = 2e-31
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+GD+ ++ C+NPKA +IL+RG + +++E ER L DA+ V + K + GGGAV
Sbjct: 352 IGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAV 411
Query: 115 EMAVSH 120
E ++
Sbjct: 412 EAELAM 417
Score = 42.9 bits (102), Expect = 4e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 4 PGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
G P+LVL T+R+ G+ Q NI+A K I ++ T
Sbjct: 3 TGQVPILVLKEGTQREQGKNAQRNNIEAAKAIADAVRT 40
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 118 bits (298), Expect = 2e-31
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+ Y+T CQN KA T+LL G ++ +++ + L DALHV ++ + K+V GGG+
Sbjct: 306 VRGGKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSS 365
Query: 115 EMAVSH 120
E+ +S
Sbjct: 366 EVELSL 371
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 118 bits (299), Expect = 3e-31
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G E + C K CT+LLRG ++ ++ E ER+L DA+ + + + +V GGGA
Sbjct: 357 IGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGAT 416
Query: 115 EMAVS 119
EM VS
Sbjct: 417 EMEVS 421
Score = 43.7 bits (104), Expect = 2e-05
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 1 MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
FG + ++VL T G+ + NI A + ++
Sbjct: 2 NFGSQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKP 42
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 118 bits (298), Expect = 3e-31
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
D+ I + +I+LRGA+ L+E ER+L D+L V + + +VPGGG V
Sbjct: 366 FSDDECILIKGTSKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNVVPGGGCV 425
Query: 115 EMAVS 119
E A++
Sbjct: 426 EAALN 430
Score = 40.3 bits (95), Expect = 3e-04
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 5 GSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
++ L ++ SG ++ +N+ A + + + +
Sbjct: 6 NNSRSDTLFLGGEKISGDDIRNQNVLATMAVANVVKS 42
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 118 bits (298), Expect = 3e-31
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G++Y ++T C+NPKA +IL+RG ++ +++E ER++ D+LHV + + + GGGA
Sbjct: 353 VGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGAT 412
Query: 115 EMAVSH 120
++
Sbjct: 413 AAEIAF 418
Score = 41.4 bits (98), Expect = 1e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 5 GSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
P+ +L TKR+SG+ ENI+A I +S+ +
Sbjct: 3 AGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRS 39
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 118 bits (298), Expect = 3e-31
Identities = 25/66 (37%), Positives = 45/66 (68%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
L E ++ C+NPKA TIL+RG ++ +++E ER L+DA+ V +++M + ++P GGA
Sbjct: 355 LAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAP 414
Query: 115 EMAVSH 120
E+ ++
Sbjct: 415 EIELAI 420
Score = 48.3 bits (116), Expect = 6e-07
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 1 MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
M PV++L T+R GR Q NI A + I ++ T
Sbjct: 1 MAQLSGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRT 41
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 118 bits (297), Expect = 4e-31
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+ D+ I + + +++LRGA+ + +E ER+L DAL V + ++ +VPGGGAV
Sbjct: 350 ICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAV 409
Query: 115 EMAVS 119
E A+S
Sbjct: 410 EAALS 414
Score = 27.1 bits (61), Expect = 4.8
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 17 KRDSGRKVQLENIQAGKYIDSSIVT 41
R +G ++ +N+ A I + + +
Sbjct: 4 DRSTGEAIRSQNVMAAASIANIVKS 28
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 118 bits (297), Expect = 4e-31
Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G++ ++ +NPK+ +IL+RG + L++ETER L+DAL +++ + + + GGGAV
Sbjct: 362 VGEDKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAV 421
Query: 115 EMAVSH 120
E+ ++
Sbjct: 422 EIEIAK 427
Score = 45.2 bits (108), Expect = 7e-06
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 1 MFGPGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
P PV++L + R G++ NI A K ++ ++ +
Sbjct: 8 ATTPEGIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKS 48
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 117 bits (296), Expect = 5e-31
Identities = 20/66 (30%), Positives = 41/66 (62%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+ + ++ EC++PKA T+L+RG ++ ++ E R + DA+ V + + ++V GGG+
Sbjct: 348 ISGDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGST 407
Query: 115 EMAVSH 120
E+ +S
Sbjct: 408 EVELSM 413
Score = 41.0 bits (97), Expect = 1e-04
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
S VL N KR GR Q NI AG+ I ++ +
Sbjct: 2 SQQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRS 37
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 117 bits (295), Expect = 6e-31
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
LG++ F + C+ +ACTI+LRGA+ L+E ER+L DAL V E + V GGG
Sbjct: 348 LGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCA 407
Query: 115 EMAVS 119
EM +S
Sbjct: 408 EMVMS 412
Score = 37.9 bits (89), Expect = 0.002
Identities = 2/34 (5%), Positives = 8/34 (23%)
Query: 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
V + + +L + + +
Sbjct: 2 SVQIFGDQVTEERAENARLSAFVGAIAVGDLVKS 35
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 116 bits (293), Expect = 1e-30
Identities = 24/66 (36%), Positives = 44/66 (66%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
LG+E F +I +C NP++ T+L++G +K L + + ++D L +N + + +VPG GAV
Sbjct: 347 LGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAV 406
Query: 115 EMAVSH 120
E+A++
Sbjct: 407 EVAMAE 412
Score = 29.8 bits (68), Expect = 0.65
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 15 NTKRDSGRKVQLENIQAGKYIDSSIVT 41
+ + NI A + + + T
Sbjct: 2 KAEVARAQAALAVNISAARGLQDVLRT 28
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 116 bits (293), Expect = 1e-30
Identities = 24/66 (36%), Positives = 44/66 (66%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+G+E F Y+TE +PK+CTIL++G++ L +T+ ++D L N++ + ++PG GA
Sbjct: 359 IGEEKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAF 418
Query: 115 EMAVSH 120
+A+S
Sbjct: 419 YIALSR 424
Score = 37.9 bits (89), Expect = 0.001
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 8 PVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
+ +L+ + N+ + + + S + T
Sbjct: 2 SLQLLNPKAESLRRDAALKVNVTSAEGLQSVLET 35
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 116 bits (292), Expect = 2e-30
Identities = 24/65 (36%), Positives = 42/65 (64%)
Query: 56 GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
+ I +C+N +A TI +RG +K ++ E +R+L DAL V RN++ + ++V GGGA E
Sbjct: 345 TKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 404
Query: 116 MAVSH 120
++ +
Sbjct: 405 ISCAL 409
Score = 32.5 bits (75), Expect = 0.094
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 15 NTKRDSGRKVQLENIQAGKYIDSSIVT 41
R G + +I A K + +++ T
Sbjct: 2 RKSRLMGLEALKSHIMAAKAVANTMKT 28
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 115 bits (291), Expect = 3e-30
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 56 GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
G++ + + +ACTI+LRGA++ +L+E ER+L DAL V + + + V GGG E
Sbjct: 342 GEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSE 401
Query: 116 MAVS 119
M ++
Sbjct: 402 MLMA 405
Score = 28.6 bits (65), Expect = 1.7
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 14 SNTKRDSGRKVQLENIQAGKYIDSSIVT 41
+ + +L + I + +
Sbjct: 1 AGADEERAETARLSSFIGAIAIGDLVKS 28
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 115 bits (290), Expect = 5e-30
Identities = 22/64 (34%), Positives = 39/64 (60%)
Query: 56 GDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVE 115
+ I + + K T +RG++K +++E ER L D+L V RN++ + ++V GGGA E
Sbjct: 388 TKDRMLIIEQSKETKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAE 447
Query: 116 MAVS 119
+ +S
Sbjct: 448 VTMS 451
Score = 37.6 bits (88), Expect = 0.002
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1 MFGPGSAPVLVLS--SNTKRDSGRKVQLENIQAGKYIDSSIVT 41
P +++ N KR G + + +I A + + S I T
Sbjct: 21 AQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKT 63
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 112 bits (283), Expect = 3e-29
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 56 GDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
G IT C +P K TI++RG++K ++ E ER++ DAL V R ++ + L+ GGGA
Sbjct: 348 GSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAP 407
Query: 115 EMAVSH 120
E+ ++
Sbjct: 408 EIELAL 413
Score = 33.7 bits (78), Expect = 0.035
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 13 SSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
S+ RD +++ NI A K + +I T
Sbjct: 1 SAYQDRDKPAQIRFSNISAAKAVADAIRT 29
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 106 bits (268), Expect = 3e-27
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 55 LGDEYFCYITECQNP-KACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGA 113
+GD + TI+LRG++ +L+++ ER + D ++ + + + +LVPGGGA
Sbjct: 339 VGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGA 398
Query: 114 VEMAVSH 120
E+ ++
Sbjct: 399 TEIELAK 405
Score = 26.7 bits (60), Expect = 6.8
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 15 NTKRDSG-RKVQLENIQAGKYIDSSIVT 41
K SG + NIQA K + + T
Sbjct: 2 GAKHFSGLEEAVYRNIQACKELAQTTRT 29
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 106 bits (267), Expect = 5e-27
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 55 LGDEYFCYITECQNPKA---CTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGG 111
+T +N A ++++RGA+ +++ETER+L DAL V R ++ E L+ GG
Sbjct: 355 SDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGG 414
Query: 112 GAVEMAVS 119
GA E+ +S
Sbjct: 415 GAPEIEIS 422
Score = 41.4 bits (98), Expect = 1e-04
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
SA V ++ ++ ++V+ NI A + + +I T
Sbjct: 2 SAKVPSNATFKNKEKPQEVRKANIIAARSVADAIRT 37
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 102 bits (256), Expect = 2e-25
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 55 LGDEYFCYIT--ECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEP--KLVPG 110
+G + + + + TI+LRGA+++ L++ ER + D + + +M KL+PG
Sbjct: 363 IGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPG 422
Query: 111 GGAVEMAVSH 120
GA E+ +
Sbjct: 423 AGATEIELIS 432
Score = 32.5 bits (75), Expect = 0.083
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 1 MFGPGSAPVLVLSSNTKRDSGRKVQ-LENIQAGKYIDSSIVT 41
+ P + + S Q +++I A + + +T
Sbjct: 3 LRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLT 44
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 83.2 bits (206), Expect = 7e-19
Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAV 114
+GDEYF ++ C+ P + + + + A N + G+
Sbjct: 360 IGDEYFSFLDNCKEPGSGSGWSHPQFEKGSGKRRWKKNFIAVSAANRFKKISSSGALGSG 419
Query: 115 EMAVSHVS------------ASKDLLNETERNLQDALHVARNIMLEPKLVPGGGAVEMAV 162
H SKD+LNE +RNLQDA+ VARN+ML P L PGGGA EMAV
Sbjct: 420 HHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAV 479
Query: 163 SHVSSCFQDNLLGR 176
S + L G
Sbjct: 480 SVKLAEKAKQLEGI 493
Score = 43.2 bits (102), Expect = 3e-05
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 6 SAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVT 41
APV+ ++++ +R +GR+ Q+ NI A K + I T
Sbjct: 2 QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRT 37
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 57.2 bits (139), Expect = 1e-10
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 55 LGDEYFCYITECQNPKACTILLRGASKDLLNE 86
+GDEYF +IT+C++PKACTILLRGAS +
Sbjct: 147 IGDEYFTFITDCKDPKACTILLRGASHHHHHH 178
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 4e-07
Identities = 44/216 (20%), Positives = 64/216 (29%), Gaps = 84/216 (38%)
Query: 29 IQA---GK--YIDSSIVTLNHWLCSSQDACLLGDEYF--CY---ITEC--QNPKACTILL 76
Q G Y +S + W + D +F Y I + NP TI
Sbjct: 1626 SQEQGMGMDLY-KTSKAAQDVW-----NRA---DNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 77 RGASKDLLNE-----TERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHV-SASKDLLNE 130
G + E + D I E E + S+ + K LL+
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE--------INEHSTSYTFRSEKGLLSA 1728
Query: 131 TERNLQDALHVARNIMLEPKLVPGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGL 190
T+ Q P L +E A F+D L + GL
Sbjct: 1729 TQ-FTQ------------PALT----LMEKA------AFED-LKSK------------GL 1752
Query: 191 IPGGAEVFFG-SVLG-------VRGALSL---VRII 215
IP A F G S LG + +S+ V ++
Sbjct: 1753 IPADA-TFAGHS-LGEYAALASLADVMSIESLVEVV 1786
Score = 30.8 bits (69), Expect = 0.42
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 2 FGPGSAPVL-VLSSNTKRDSGRKVQLENIQAG 32
FGPG A L VL+ K +G +V I AG
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRV----IVAG 531
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.005
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 1 MFGPGSAPVLVLSSNTK 17
++ SAP L + + +
Sbjct: 31 LYADDSAPALAIKATME 47
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 30.7 bits (70), Expect = 0.11
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 3 GPGSAPVLVLSSNTKRDSG 21
G ++P +L N +
Sbjct: 41 GAAASPTFLLYLNQNKPKA 59
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity,
multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1
PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L*
1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Length = 120
Score = 30.5 bits (70), Expect = 0.15
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
P ++ R G
Sbjct: 42 PDHLFTGLIGGTNNRAPG 59
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold,
fluorogen activation, dimethylindole RE binding
protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB:
3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Length = 123
Score = 30.2 bits (69), Expect = 0.18
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG+ P +++ ++ +R SG
Sbjct: 41 PGTTPKVLIYNDDRRSSG 58
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide
binder, SCFV, picomolar binder, immune system; 2.35A
{Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Length = 135
Score = 30.2 bits (69), Expect = 0.23
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
P ++ R G
Sbjct: 47 PDHLFTGLIGGTNNRAPG 64
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 29.9 bits (68), Expect = 0.35
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 55 LGDEYFCYITECQNP 69
+GD+ ++ C+N
Sbjct: 140 IGDDRMTFVMGCKNH 154
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 29.9 bits (68), Expect = 0.42
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
+L++ + KR SG
Sbjct: 38 SDKNILLLIYMDNKRPSG 55
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 30.0 bits (68), Expect = 0.47
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
G APVLV+ + +R SG
Sbjct: 39 AGQAPVLVIYEDNRRPSG 56
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.5 bits (67), Expect = 0.50
Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 159 EMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGA 208
E+ + L G++ + G L G+ ++
Sbjct: 76 ELTPEKNAVTISSKLGGQINLV---LLGIDSLNDKGSFTLTTGIMMEDPI 122
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 29.7 bits (67), Expect = 0.57
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG+AP L++ N +R SG
Sbjct: 60 PGTAPKLLIYRNNQRPSG 77
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment,
immune system; HET: PG4; 1.60A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L*
1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L*
1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K*
1mfe_L* 1mfb_L* ...
Length = 212
Score = 29.6 bits (67), Expect = 0.62
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
P ++ R G
Sbjct: 42 PDHLFTGLIGGTNNRAPG 59
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo
sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A*
2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L
2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L*
3qeg_L ...
Length = 216
Score = 29.2 bits (66), Expect = 0.74
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG+AP L++ N KR SG
Sbjct: 41 PGTAPKLLIYDNNKRPSG 58
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 28.9 bits (65), Expect = 0.93
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
G AP LV+ KR SG
Sbjct: 37 AGKAPKLVIYDVNKRPSG 54
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 27.9 bits (63), Expect = 2.1
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG P L++ + SG
Sbjct: 39 PGQQPKLLIYKASNLASG 56
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A
{Daucus carota} SCOP: b.80.1.5
Length = 319
Score = 28.1 bits (63), Expect = 2.2
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 2 FGPGSAPVLVLSSNTKR--DSGRKVQLENIQAGKYIDSSIVTLNHWL 46
G G+A + R G KV + +A + S + WL
Sbjct: 269 TGAGAAT-------SGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWL 308
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta
sheet, immune system; 1.60A {Homo sapiens} SCOP:
b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A*
2w0l_A
Length = 109
Score = 27.1 bits (61), Expect = 2.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 5 GSAPVLVLSSNTKRDSG 21
SAP+ V+ + +R SG
Sbjct: 40 RSAPITVIYEDNQRPSG 56
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 27.6 bits (62), Expect = 2.7
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
+P L++ ++ SG
Sbjct: 40 SHESPRLLIKYASQSISG 57
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.5 bits (62), Expect = 2.7
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG P L++ + SG
Sbjct: 40 PGQRPRLLIYETSTLASG 57
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 27.3 bits (61), Expect = 3.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG +P L++ + R SG
Sbjct: 78 PGQSPKLLIYQVSTRFSG 95
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 27.3 bits (61), Expect = 3.4
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 153 PGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRG 207
G + + + V NL H G L GG V G+ +
Sbjct: 100 GGNASSDEFLKSVKGMIDMNLYS---AFASAHIGAKLLNQGGLFVLTGASAALNR 151
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;
anti-CD3epsilon, T-cell receptor, signalling, IMMU;
2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B
3ldb_B*
Length = 213
Score = 27.2 bits (61), Expect = 3.6
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG AP L++ K G
Sbjct: 40 PGKAPKLLIYYTNKLADG 57
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 27.4 bits (61), Expect = 3.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
G AP L++ + +G
Sbjct: 178 LGEAPKLLIYNTNSLQTG 195
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 27.0 bits (60), Expect = 4.1
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG +P ++ +K DSG
Sbjct: 82 PGQSPKRLIYLVSKLDSG 99
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 26.8 bits (60), Expect = 4.6
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG P L++S G
Sbjct: 62 PGEPPRLLISDGNTLRPG 79
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 26.4 bits (59), Expect = 7.2
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 172 NLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRGA 208
+ +G V +HA P L G + + GSV G+ A
Sbjct: 128 DFVG---VINTVHAALPYLTSGASIITTGSVAGLIAA 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat,
transcription; 2.20A {Homo sapiens}
Length = 268
Score = 26.5 bits (58), Expect = 7.2
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 42 LNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRGASKDLLNET 87
+ L A LL CY+ NP+A L + L + T
Sbjct: 199 MVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTT 244
>3sob_L Antibody light chain; beta propeller, protein binding-immune
system complex; 1.90A {Homo sapiens} PDB: 1pkq_A
3u1s_L*
Length = 237
Score = 26.4 bits (59), Expect = 7.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 4 PGSAPVLVLSSNTKRDSG 21
PG AP L++ S + SG
Sbjct: 63 PGKAPKLLIYSASFLYSG 80
>2lm3_A TRIM5alpha, tripartite motif-containing protein 5; ligase; NMR
{Macaca mulatta}
Length = 208
Score = 26.1 bits (58), Expect = 8.6
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 5/57 (8%)
Query: 4 PGSAPVLVLSSNTKRDSGRKVQLENIQAGKYIDSSIVTLNHWLCSSQDACLLGDEYF 60
+ V++ + R+V N Q ++ T + +LG +
Sbjct: 18 TNNISHAVIAED-----KRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSI 69
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 26.1 bits (58), Expect = 8.9
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 153 PGGGAVEMAVSHVSSCFQDNLLGRVVVTLGLHAGGPGLIPGGAEVFFGSVLGVRG 207
G + + ++ ++ T+ H L GG G+ + G
Sbjct: 89 GGNAKSKSLFKNCDLMWKQSIWT---STISSHLATKHLKEGGLLTLAGAKAALDG 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,146,877
Number of extensions: 182945
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 101
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)