RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2833
         (216 letters)



>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
           gamma chain [TaxId: 10090]}
          Length = 168

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 35  IDSSIVTLNHWLCSSQDACLLGDEYFCYITECQNPKACTILLRG 78
            +              +   +GDEYF +IT+C++PKACTILLRG
Sbjct: 125 PEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168


>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
          {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
          79679]}
          Length = 258

 Score = 30.5 bits (68), Expect = 0.11
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 9  VLVLSSNTKRDSGRKVQLENIQAGKYIDSSI-VTL 42
          V++L   T+R  GR  Q  NI A + I  ++  TL
Sbjct: 1  VVILPEGTQRYVGRDAQRLNILAARIIAETVRTTL 35


>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
           Thermoplasma acidophilum, beta chain [TaxId: 2303]}
          Length = 152

 Score = 28.4 bits (63), Expect = 0.40
 Identities = 6/15 (40%), Positives = 12/15 (80%)

Query: 55  LGDEYFCYITECQNP 69
           +G++Y  ++T C+NP
Sbjct: 138 VGEDYMTFVTGCKNP 152


>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon
           Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
          Length = 153

 Score = 27.6 bits (61), Expect = 0.80
 Identities = 5/15 (33%), Positives = 8/15 (53%)

Query: 55  LGDEYFCYITECQNP 69
           L  E   ++  C+NP
Sbjct: 139 LAGENMIFVEGCKNP 153


>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 25.9 bits (55), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 111 GGAVEMAVSHVSASKDLL 128
           G AVE+A++ V A  DLL
Sbjct: 24  GPAVELALARVKARPDLL 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 738,354
Number of extensions: 31297
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 7
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)