Query psy2834
Match_columns 137
No_of_seqs 128 out of 1268
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:05:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361|consensus 99.9 5.3E-24 1.2E-28 180.0 10.5 112 13-124 417-531 (543)
2 TIGR02347 chap_CCT_zeta T-comp 99.9 4.8E-23 1E-27 180.3 11.2 106 14-119 421-529 (531)
3 PTZ00212 T-complex protein 1 s 99.9 5.8E-23 1.3E-27 179.6 11.4 104 14-117 421-527 (533)
4 cd03336 TCP1_beta TCP-1 (CTT o 99.9 6.5E-23 1.4E-27 178.6 11.5 104 14-117 409-515 (517)
5 TIGR02341 chap_CCT_beta T-comp 99.9 6.8E-23 1.5E-27 178.7 11.5 104 15-118 411-517 (519)
6 cd03335 TCP1_alpha TCP-1 (CTT 99.9 5.7E-23 1.2E-27 179.2 10.7 104 14-117 413-527 (527)
7 cd03342 TCP1_zeta TCP-1 (CTT o 99.9 1.1E-22 2.4E-27 176.0 11.2 103 14-116 378-483 (484)
8 TIGR02342 chap_CCT_delta T-com 99.9 9.3E-23 2E-27 177.6 9.9 101 15-115 413-516 (517)
9 TIGR02344 chap_CCT_gamma T-com 99.9 1.9E-22 4.2E-27 175.7 11.7 104 14-117 416-523 (525)
10 cd03340 TCP1_eta TCP-1 (CTT or 99.9 1.9E-22 4.1E-27 175.6 11.2 104 14-117 414-521 (522)
11 TIGR02346 chap_CCT_theta T-com 99.9 2.4E-22 5.2E-27 175.7 11.7 112 14-125 413-529 (531)
12 cd03337 TCP1_gamma TCP-1 (CTT 99.9 3.2E-22 7E-27 172.9 10.5 102 14-115 375-480 (480)
13 TIGR02340 chap_CCT_alpha T-com 99.9 7.5E-22 1.6E-26 172.6 11.7 105 15-119 418-533 (536)
14 PRK12851 groEL chaperonin GroE 99.9 7.5E-22 1.6E-26 173.2 11.5 110 15-129 425-540 (541)
15 cd03338 TCP1_delta TCP-1 (CTT 99.9 6E-22 1.3E-26 172.1 10.4 102 14-115 411-515 (515)
16 TIGR02345 chap_CCT_eta T-compl 99.9 9.1E-22 2E-26 171.6 11.2 103 14-116 415-520 (522)
17 PRK12850 groEL chaperonin GroE 99.9 9.6E-22 2.1E-26 172.7 11.1 111 15-130 425-541 (544)
18 cd03343 cpn60 cpn60 chaperonin 99.9 1.2E-21 2.7E-26 170.1 11.3 103 14-116 412-517 (517)
19 cd03341 TCP1_theta TCP-1 (CTT 99.9 1.1E-21 2.5E-26 169.2 10.4 102 14-115 365-471 (472)
20 TIGR02339 thermosome_arch ther 99.9 1.6E-21 3.4E-26 169.8 11.3 102 14-115 415-519 (519)
21 KOG0363|consensus 99.9 1.1E-21 2.4E-26 165.3 9.6 109 14-122 414-525 (527)
22 PRK12849 groEL chaperonin GroE 99.9 1.9E-21 4.1E-26 170.8 11.2 104 14-122 423-529 (542)
23 PRK12852 groEL chaperonin GroE 99.9 2.5E-21 5.4E-26 169.9 11.7 105 15-123 425-532 (545)
24 cd03339 TCP1_epsilon TCP-1 (CT 99.9 1.6E-21 3.4E-26 170.1 10.2 101 14-114 422-526 (526)
25 PRK00013 groEL chaperonin GroE 99.9 2.2E-21 4.8E-26 170.4 11.0 107 15-125 424-533 (542)
26 TIGR02343 chap_CCT_epsi T-comp 99.8 3.6E-21 7.8E-26 168.4 10.3 101 15-115 427-531 (532)
27 PTZ00114 Heat shock protein 60 99.8 1.7E-20 3.6E-25 165.1 11.8 111 14-127 436-551 (555)
28 KOG0362|consensus 99.8 5.5E-21 1.2E-25 164.6 8.4 117 14-132 416-536 (537)
29 cd00309 chaperonin_type_I_II c 99.8 1.7E-20 3.7E-25 160.8 10.5 101 14-114 361-464 (464)
30 CHL00093 groEL chaperonin GroE 99.8 2.2E-20 4.8E-25 163.5 10.5 100 14-117 423-526 (529)
31 COG0459 GroL Chaperonin GroEL 99.8 7.6E-20 1.6E-24 160.4 10.6 103 16-120 411-518 (524)
32 PRK14104 chaperonin GroEL; Pro 99.8 1.4E-19 3E-24 159.2 11.0 106 16-125 426-534 (546)
33 PLN03167 Chaperonin-60 beta su 99.8 2E-19 4.3E-24 159.8 12.0 112 15-129 479-594 (600)
34 TIGR02348 GroEL chaperonin Gro 99.8 2.8E-19 6.1E-24 156.4 10.4 97 15-116 423-522 (524)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 99.8 1.8E-19 3.9E-24 153.3 8.9 103 14-117 380-485 (485)
36 KOG0358|consensus 99.8 1.2E-19 2.6E-24 153.5 7.3 101 15-115 430-533 (534)
37 KOG0357|consensus 99.8 1.9E-19 4.2E-24 149.8 7.0 104 15-118 291-398 (400)
38 cd03344 GroEL GroEL_like type 99.8 4.1E-19 8.9E-24 155.3 9.2 96 14-114 421-519 (520)
39 KOG0364|consensus 99.6 2.1E-16 4.5E-21 135.3 5.7 106 15-120 417-525 (527)
40 KOG0359|consensus 99.5 1.5E-14 3.4E-19 123.8 8.4 102 15-118 413-517 (520)
41 KOG0360|consensus 99.4 3.8E-14 8.2E-19 122.3 2.2 107 16-122 425-542 (545)
42 KOG0356|consensus 98.3 2.1E-06 4.6E-11 75.7 6.6 96 23-124 447-545 (550)
43 KOG0361|consensus 93.2 0.088 1.9E-06 45.9 3.3 63 41-107 70-136 (543)
44 KOG0364|consensus 93.0 0.094 2E-06 46.2 3.2 64 41-108 69-136 (527)
45 KOG0358|consensus 92.4 0.2 4.4E-06 43.6 4.4 62 43-108 78-143 (534)
46 cd03337 TCP1_gamma TCP-1 (CTT 92.3 0.15 3.2E-06 44.5 3.7 58 46-107 71-132 (480)
47 COG0459 GroL Chaperonin GroEL 92.2 0.12 2.7E-06 46.0 3.0 61 44-108 64-128 (524)
48 TIGR02341 chap_CCT_beta T-comp 92.2 0.092 2E-06 46.4 2.1 61 44-108 69-133 (519)
49 TIGR02346 chap_CCT_theta T-com 91.7 0.14 3E-06 45.4 2.8 59 46-108 73-135 (531)
50 cd03335 TCP1_alpha TCP-1 (CTT 91.7 0.14 3E-06 45.2 2.7 60 45-108 62-125 (527)
51 TIGR02344 chap_CCT_gamma T-com 91.6 0.13 2.9E-06 45.2 2.5 59 46-108 71-133 (525)
52 cd03344 GroEL GroEL_like type 91.5 0.11 2.5E-06 45.9 2.0 59 46-108 67-129 (520)
53 TIGR02345 chap_CCT_eta T-compl 91.5 0.15 3.3E-06 44.9 2.8 59 46-108 72-134 (522)
54 TIGR02342 chap_CCT_delta T-com 91.4 0.17 3.6E-06 44.7 2.9 58 46-107 64-125 (517)
55 TIGR02343 chap_CCT_epsi T-comp 91.3 0.2 4.2E-06 44.5 3.2 59 46-108 82-144 (532)
56 PRK12850 groEL chaperonin GroE 91.2 0.14 3.1E-06 45.6 2.4 57 48-108 72-132 (544)
57 PRK12851 groEL chaperonin GroE 91.2 0.18 3.9E-06 44.9 3.0 58 46-107 70-131 (541)
58 cd03336 TCP1_beta TCP-1 (CTT o 91.1 0.14 3.1E-06 45.0 2.3 59 46-108 70-132 (517)
59 PRK12849 groEL chaperonin GroE 91.1 0.1 2.3E-06 46.4 1.4 59 46-108 69-131 (542)
60 PTZ00212 T-complex protein 1 s 90.7 0.16 3.4E-06 45.0 2.1 59 46-108 82-144 (533)
61 PTZ00114 Heat shock protein 60 90.3 0.14 3.1E-06 45.6 1.5 59 46-108 81-143 (555)
62 TIGR02340 chap_CCT_alpha T-com 90.1 0.24 5.2E-06 43.8 2.7 59 46-108 67-129 (536)
63 cd03339 TCP1_epsilon TCP-1 (CT 90.1 0.24 5.2E-06 43.7 2.7 59 46-108 78-140 (526)
64 TIGR02347 chap_CCT_zeta T-comp 89.9 0.21 4.5E-06 44.4 2.1 59 46-108 71-133 (531)
65 TIGR02348 GroEL chaperonin Gro 89.6 0.17 3.6E-06 44.9 1.3 59 46-108 68-130 (524)
66 PLN03167 Chaperonin-60 beta su 89.3 0.31 6.7E-06 44.1 2.8 58 47-108 126-187 (600)
67 cd03340 TCP1_eta TCP-1 (CTT or 89.2 0.3 6.4E-06 43.0 2.6 59 46-108 71-133 (522)
68 TIGR02339 thermosome_arch ther 89.2 0.3 6.5E-06 43.0 2.7 59 46-108 71-133 (519)
69 cd03338 TCP1_delta TCP-1 (CTT 89.1 0.35 7.6E-06 42.5 3.0 59 46-108 63-125 (515)
70 PRK00013 groEL chaperonin GroE 89.0 0.23 5E-06 44.3 1.8 58 47-108 70-131 (542)
71 cd03341 TCP1_theta TCP-1 (CTT 88.8 0.35 7.6E-06 42.1 2.8 59 46-108 63-125 (472)
72 PRK14104 chaperonin GroEL; Pro 88.7 0.22 4.7E-06 44.5 1.5 60 45-108 69-132 (546)
73 cd03342 TCP1_zeta TCP-1 (CTT o 88.5 0.33 7.2E-06 42.5 2.4 59 46-108 67-129 (484)
74 PRK12852 groEL chaperonin GroE 88.1 0.2 4.3E-06 44.7 0.7 60 45-108 69-132 (545)
75 cd00309 chaperonin_type_I_II c 86.4 0.57 1.2E-05 40.5 2.6 60 45-108 62-125 (464)
76 cd03343 cpn60 cpn60 chaperonin 85.6 0.59 1.3E-05 41.0 2.3 59 46-108 70-132 (517)
77 CHL00093 groEL chaperonin GroE 84.8 0.56 1.2E-05 41.7 1.9 55 50-108 73-131 (529)
78 KOG0363|consensus 79.2 0.58 1.3E-05 40.8 -0.1 60 46-108 75-137 (527)
79 KOG0362|consensus 69.9 7 0.00015 35.1 4.2 65 45-115 80-148 (537)
80 PF00118 Cpn60_TCP1: TCP-1/cpn 67.2 4.5 9.7E-05 34.5 2.4 57 47-107 45-105 (485)
81 KOG0360|consensus 49.3 15 0.00033 32.9 2.6 62 43-108 71-136 (545)
82 PF03012 PP_M1: Phosphoprotein 49.2 11 0.00025 31.3 1.8 45 1-45 233-281 (298)
83 cd08326 CARD_CASP9 Caspase act 32.6 30 0.00066 23.4 1.6 41 4-44 37-81 (84)
84 PRK04027 30S ribosomal protein 31.6 71 0.0015 25.2 3.7 30 24-57 74-106 (195)
85 cd08323 CARD_APAF1 Caspase act 30.9 32 0.00069 23.4 1.5 41 4-44 35-79 (86)
86 smart00114 CARD Caspase recrui 29.3 41 0.00088 22.3 1.8 40 5-44 42-84 (88)
87 cd08327 CARD_RAIDD Caspase act 23.0 62 0.0013 22.4 1.8 41 5-45 43-85 (94)
88 TIGR01028 S7_S5_E_A ribosomal 21.9 1.3E+02 0.0029 23.5 3.6 30 24-57 65-97 (186)
89 PTZ00091 40S ribosomal protein 20.9 1.5E+02 0.0033 23.4 3.8 30 24-57 72-104 (193)
90 COG0049 RpsG Ribosomal protein 20.9 1.5E+02 0.0032 22.5 3.5 32 24-59 32-66 (148)
No 1
>KOG0361|consensus
Probab=99.91 E-value=5.3e-24 Score=179.99 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=106.6
Q ss_pred chhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccH
Q psy2834 13 KKDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPL 89 (137)
Q Consensus 13 ~~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~ 89 (137)
.|=++++++++.|++|+-+.+| |||+| |+|++|+|+|.++++++||..|+.|..||||++.++.+.|+++.+||||.
T Consensus 417 Sk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~ 496 (543)
T KOG0361|consen 417 SKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPS 496 (543)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChH
Confidence 3668999999999999999999 99999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQ 124 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~ 124 (137)
.||++++..|+|+|++||.||+.|++++++++.+.
T Consensus 497 ~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~ 531 (543)
T KOG0361|consen 497 IVKINAITAATEAACLILSVDETIKNPKSQSAPPS 531 (543)
T ss_pred HHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCC
Confidence 99999999999999999999999999887776533
No 2
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.89 E-value=4.8e-23 Score=180.26 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=99.8
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-+++++...+|++|+++++| ||+.| ++||+|+|+|+.+++.+++..|..|..++|+|+.+|.+.||++.|||||+.
T Consensus 421 ~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~ 500 (531)
T TIGR02347 421 CHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYR 500 (531)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHH
Confidence 346778888999999999999 99999 999999999999999999999988878899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCcCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSKKK 119 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~ 119 (137)
+|.+++++|+++|++|||||+||+.+|..
T Consensus 501 vk~~al~~A~e~a~~iLrID~ii~~~~~~ 529 (531)
T TIGR02347 501 VKKQLIQSATVIASQLLLVDEVMRAGRSM 529 (531)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCcccc
Confidence 99999999999999999999999987753
No 3
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.89 E-value=5.8e-23 Score=179.57 Aligned_cols=104 Identities=28% Similarity=0.323 Sum_probs=99.3
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+.+++++..++|++++++++| ||++| ++|++|||+|+.+++.+++..|.+++.++|+|+.+|.+.||++.|||||+.
T Consensus 421 ~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~ 500 (533)
T PTZ00212 421 NAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYK 500 (533)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHH
Confidence 457788889999999999999 99999 999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
||.++|+.|+++|++|||||++|...|
T Consensus 501 vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 501 VKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 999999999999999999999999865
No 4
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.89 E-value=6.5e-23 Score=178.57 Aligned_cols=104 Identities=29% Similarity=0.363 Sum_probs=99.4
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-+++++..++|++|+++++| ||++| ++||+|||+|+.+++.+++..|.+|+.++|+|+.+|.+.||++.|||||+.
T Consensus 409 ~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~ 488 (517)
T cd03336 409 KAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFK 488 (517)
T ss_pred HHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHH
Confidence 357788889999999999999 99999 999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
||.++++.|+++|++|||||++|..+|
T Consensus 489 vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 489 VKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999999999999999999999876
No 5
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.89 E-value=6.8e-23 Score=178.72 Aligned_cols=104 Identities=26% Similarity=0.389 Sum_probs=99.4
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-+++++...+|++++++++| ||++| ++||+|||+|+.+++.+++..|.+|..++|+|+.+|.+.||++.|||||+.|
T Consensus 411 ~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~v 490 (519)
T TIGR02341 411 AVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKV 490 (519)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHH
Confidence 47778888999999999999 99999 9999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKK 118 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~ 118 (137)
|.++++.|+++|++|||||++|+++|.
T Consensus 491 k~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 491 KRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 999999999999999999999999873
No 6
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.89 E-value=5.7e-23 Score=179.16 Aligned_cols=104 Identities=21% Similarity=0.207 Sum_probs=97.6
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC--------CceeeeeccCcchhhhhh
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG--------ETTFGINGETGDLVDMKT 82 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G--------~~~~GVdl~~g~i~d~~e 82 (137)
.-+++++...+|++++++++| ||+.| ++||+|+|+|+.+++.+++..|..| ..++|+|+.+|.+.||++
T Consensus 413 ~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~ 492 (527)
T cd03335 413 IYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLE 492 (527)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhh
Confidence 356788889999999999999 99999 9999999999999999999999876 457899999999999999
Q ss_pred hCccccHHHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 83 LGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 83 ~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
.|||||+.+|.++|++|+|+|++|||||++|+++|
T Consensus 493 ~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 493 AGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred ccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 99999999999999999999999999999998865
No 7
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.88 E-value=1.1e-22 Score=176.04 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=97.8
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-+++++...+|++|+++++| ||+.| ++||+|||+|+.+++.+++..|..|+.++|+|+.+|.+.||++.|||||+.
T Consensus 378 ~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~ 457 (484)
T cd03342 378 AHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYS 457 (484)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHH
Confidence 356788888999999999999 99999 999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGS 116 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~ 116 (137)
+|.++++.|+++|++|||||+||+++
T Consensus 458 vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 458 VKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999874
No 8
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.88 E-value=9.3e-23 Score=177.61 Aligned_cols=101 Identities=25% Similarity=0.294 Sum_probs=96.9
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-+++++...+|.+|+++++| ||+.| ++|++|+|+|+.+++.+++..|..|+.++|+|+.+|.+.||++.|||||+.|
T Consensus 413 ~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~v 492 (517)
T TIGR02342 413 KLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLV 492 (517)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHH
Confidence 56778888999999999999 99999 9999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
|.++++.|+++|++|||||+||.+
T Consensus 493 k~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 493 TTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred HHHHHHHHHHHHHHHhcccceeec
Confidence 999999999999999999999876
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.88 E-value=1.9e-22 Score=175.68 Aligned_cols=104 Identities=43% Similarity=0.625 Sum_probs=98.2
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL 89 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~ 89 (137)
+-+++++..++|.+|+++++| ||+.| ++||+|||+|+.+++.+++..|.+| ..++|+|+.+|.+.||++.|||||+
T Consensus 416 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~ 495 (525)
T TIGR02344 416 VYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPL 495 (525)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecH
Confidence 346678889999999999999 99999 9999999999999999999999877 6789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
.||.++++.|+++|++|||||++|.+.|
T Consensus 496 ~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 496 AVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 9999999999999999999999998866
No 10
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.88 E-value=1.9e-22 Score=175.62 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=98.2
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCC-ceeeeeccCcchhhhhhhCccccH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGE-TTFGINGETGDLVDMKTLGIWEPL 89 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~-~~~GVdl~~g~i~d~~e~gV~dP~ 89 (137)
+-+++++....|++++++++| ||+.| ++|++|||+|+.+++.+++..|.+|+ .++|+|+.+|.+.||++.|||||+
T Consensus 414 ~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~ 493 (522)
T cd03340 414 KYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPS 493 (522)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcH
Confidence 356778888999999999999 99999 99999999999999999999999886 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
.||+++++.|+|+|++|||||++|++++
T Consensus 494 ~vk~~~i~~A~e~a~~iL~id~ii~~~~ 521 (522)
T cd03340 494 LVKINALTAATEAACLILSVDETIKNPK 521 (522)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhheeCCC
Confidence 9999999999999999999999998854
No 11
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.88 E-value=2.4e-22 Score=175.72 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=102.9
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcc--hhhhhhhCcccc
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGD--LVDMKTLGIWEP 88 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~--i~d~~e~gV~dP 88 (137)
+.+++++..+.|.+++++++| ||+.| ++|++|||+|+.+++.+++..|..++.++|+|+.+|. +.||++.|||||
T Consensus 413 ~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp 492 (531)
T TIGR02346 413 LRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDN 492 (531)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEc
Confidence 457778888999999999999 99999 9999999999999999999999877778999999998 599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC
Q psy2834 89 LTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125 (137)
Q Consensus 89 ~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~ 125 (137)
+.||.++++.|+++|++|||||++|..+|...++.|.
T Consensus 493 ~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~ 529 (531)
T TIGR02346 493 LATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQ 529 (531)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCC
Confidence 9999999999999999999999999998766665554
No 12
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.87 E-value=3.2e-22 Score=172.89 Aligned_cols=102 Identities=45% Similarity=0.706 Sum_probs=96.6
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL 89 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~ 89 (137)
+.+++++..++|.+|+++++| ||+.| ++||+|||+|+++++.+++..|.+| +.++|+|+.+|.+.||++.|||||+
T Consensus 375 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~ 454 (480)
T cd03337 375 HALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPL 454 (480)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcH
Confidence 457788889999999999999 99999 9999999999999999999999887 6789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
.+|.++++.|+++|++|||||++|.+
T Consensus 455 ~vk~~~l~~A~e~a~~iL~id~ii~~ 480 (480)
T cd03337 455 AVKAQTYKTAIEAACMLLRIDDIVSG 480 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheecC
Confidence 99999999999999999999999853
No 13
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.87 E-value=7.5e-22 Score=172.58 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=97.4
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC--------CceeeeeccCcchhhhhhh
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG--------ETTFGINGETGDLVDMKTL 83 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G--------~~~~GVdl~~g~i~d~~e~ 83 (137)
-+++++..++|++++++++| ||+.| ++||+|+|+|+.+++.+++..|..| ..++|+|+.+|.+.||++.
T Consensus 418 ~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~ 497 (536)
T TIGR02340 418 YLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEA 497 (536)
T ss_pred HHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhc
Confidence 46677888999999999999 99999 9999999999999999999999876 3478999999999999999
Q ss_pred CccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCC
Q psy2834 84 GIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119 (137)
Q Consensus 84 gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~ 119 (137)
|||||+.+|.++|+.|+|+|++|||||++|..+|.+
T Consensus 498 gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 498 GVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred cceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 999999999999999999999999999999997643
No 14
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.87 E-value=7.5e-22 Score=173.23 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=99.3
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-+++++.. +|++|+++++| ||++| ++||+|||+|+.+++.+++..| .++|+|+.+|.+.||.+.|||||+.|
T Consensus 425 ~L~~~~~~-~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~v 499 (541)
T PRK12851 425 ALDKLETA-NGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKV 499 (541)
T ss_pred HHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHH
Confidence 46677776 99999999999 99999 9999999999999999998876 26899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcCCCCC---CCCCCCC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDE---NQNQAAQ 129 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~---~~~~~~~ 129 (137)
|.++|+.|+++|++||+||++|..+|.+.++ .|+++||
T Consensus 500 k~~al~~A~e~A~~iL~id~iI~~~~~~~~~~~~~~~~~~~ 540 (541)
T PRK12851 500 VRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPPGGGMD 540 (541)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcCCCCCCCCCCCCCcccC
Confidence 9999999999999999999999998866444 5666676
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.87 E-value=6e-22 Score=172.11 Aligned_cols=102 Identities=25% Similarity=0.295 Sum_probs=96.5
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+.+++++..++|.+|+++++| ||+.| ++|++|+|+|+.+++.+++..|..|+.++|+|+.+|.+.||++.|||||+.
T Consensus 411 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~ 490 (515)
T cd03338 411 LQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLL 490 (515)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHH
Confidence 356678888899999999999 99999 999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
||+++++.|+++|++|||||+||++
T Consensus 491 vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 491 VSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred HHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999874
No 16
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.87 E-value=9.1e-22 Score=171.58 Aligned_cols=103 Identities=25% Similarity=0.278 Sum_probs=97.6
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+.+++++....|++++++++| ||++| ++||+|||+|+.+++.+++..|..+..++|+|+.+|.+.||++.|||||+.
T Consensus 415 ~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~ 494 (522)
T TIGR02345 415 KILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLL 494 (522)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHH
Confidence 356778888999999999999 99999 999999999999999999999988777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGS 116 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~ 116 (137)
||+++++.|+++|++||+||++|+++
T Consensus 495 vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 495 VKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 99999999999999999999999874
No 17
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.86 E-value=9.6e-22 Score=172.67 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=98.7
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-++++ ...+|++|+++++| ||++| |+||+|||+|+.+++.+++..| .++|+|+.+|.+.||.+.|||||+.|
T Consensus 425 ~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~v 499 (544)
T PRK12850 425 ALRGL-KGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKV 499 (544)
T ss_pred HHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHH
Confidence 45556 67899999999999 99999 9999999999999999998875 36899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcCCCCC---CCCCCCCC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDE---NQNQAAQP 130 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~---~~~~~~~~ 130 (137)
|.++|++|+++|++||+||++|..+|.+.++ +|+|+|-+
T Consensus 500 k~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~~~~~~~~~ 541 (544)
T PRK12850 500 TRTALQDAASIAALLITTEAMVAEAPKKAAAAAAGPGPGMGG 541 (544)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhccCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999998765333 66666643
No 18
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.86 E-value=1.2e-21 Score=170.07 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=97.2
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
..+++++..++|++++++++| ||+.| ++|++|||+|+.+++.+++..|..|..++|+|+.+|.+.||++.|||||+.
T Consensus 412 ~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~ 491 (517)
T cd03343 412 KRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLR 491 (517)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHH
Confidence 357788889999999999999 99999 999999999999999999999987777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGS 116 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~ 116 (137)
+|.++++.|+++|++||+||++|+++
T Consensus 492 vk~~~l~~A~e~a~~iL~id~ii~~~ 517 (517)
T cd03343 492 VKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhhCC
Confidence 99999999999999999999999763
No 19
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.86 E-value=1.1e-21 Score=169.18 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=96.8
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCc--chhhhhhhCcccc
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETG--DLVDMKTLGIWEP 88 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g--~i~d~~e~gV~dP 88 (137)
..+++++....+.+++++++| ||+.| ++|++|||+|+.+++.+++..|.+++.++|+|+.+| .+.||++.|||||
T Consensus 365 ~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp 444 (472)
T cd03341 365 KKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDH 444 (472)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceec
Confidence 457778888899999999999 99999 999999999999999999999988888899999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 89 LTVKLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 89 ~~vK~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
+.||+++++.|+++|++|||||++|..
T Consensus 445 ~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 445 LATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 999999999999999999999999875
No 20
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.86 E-value=1.6e-21 Score=169.80 Aligned_cols=102 Identities=30% Similarity=0.368 Sum_probs=96.3
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-+++++..+++++++++++| ||+.| ++|++|||+|+.+++.+++..|..+..++|+|+.+|.+.||++.|||||+.
T Consensus 415 ~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~ 494 (519)
T TIGR02339 415 LRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLR 494 (519)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHH
Confidence 356778888999999999999 99999 999999999999999999999987777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
||.++++.|+++|++||+||++|++
T Consensus 495 vk~~~l~~A~e~a~~iL~id~ii~~ 519 (519)
T TIGR02339 495 VKEQAIKSATEAATMILRIDDVIAA 519 (519)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHhhC
Confidence 9999999999999999999999863
No 21
>KOG0363|consensus
Probab=99.86 E-value=1.1e-21 Score=165.27 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=105.9
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-++++|...+|++..++++| ||..+ .+||.|+|+|..+++.+|+.+|.+|.+++|+|+.+|++.||.+.||+|++.
T Consensus 414 ~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~ 493 (527)
T KOG0363|consen 414 KAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLK 493 (527)
T ss_pred HHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHH
Confidence 678999999999999999999 99999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~ 122 (137)
||.+++.+|+|+|.+|||+|.||++.|+++.+
T Consensus 494 vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 494 VKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 99999999999999999999999999988765
No 22
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.86 E-value=1.9e-21 Score=170.81 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=95.8
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-|++++ .++|++|+++++| ||++| ++||+|||+|+.+++.+++..| .++|+|+.+|.+.||.+.|||||+.
T Consensus 423 ~~L~~~~-~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~ 497 (542)
T PRK12849 423 KALDELA-GLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVK 497 (542)
T ss_pred HHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHH
Confidence 3567778 8999999999999 99999 9999999999999999998775 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~ 122 (137)
+|.++++.|+++|++||+||++|..+|.+...
T Consensus 498 vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~ 529 (542)
T PRK12849 498 VTRSALQNAASVAGLLLTTEALVADKPEEEDP 529 (542)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC
Confidence 99999999999999999999999998865444
No 23
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.86 E-value=2.5e-21 Score=169.93 Aligned_cols=105 Identities=23% Similarity=0.259 Sum_probs=96.0
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-|.+++.. +|.+|+++++| ||++| ++||+|||+|+.+++.+++..| +.++|+|+.+|.+.||.+.|||||+.|
T Consensus 425 ~L~~~~~~-~~~~q~~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~v 500 (545)
T PRK12852 425 AVGRINND-NADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKV 500 (545)
T ss_pred HHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHH
Confidence 46677777 89999999999 99999 9999999999999999998877 357899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcCCCCCC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDEN 123 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~ 123 (137)
|.++++.|+++|++||+||++|..+|.++.++
T Consensus 501 k~~al~~A~e~a~~iL~id~iI~~~~~~~~~~ 532 (545)
T PRK12852 501 VRTALQDAASVAGLLVTTEAMVAELPKKDAAP 532 (545)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhcCCCCCCCC
Confidence 99999999999999999999999988665543
No 24
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.86 E-value=1.6e-21 Score=170.14 Aligned_cols=101 Identities=23% Similarity=0.238 Sum_probs=94.3
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPL 89 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~ 89 (137)
+-+++++..++|.+++++++| ||++| ++|++|||+|+.+++.+++..|.++ ..++|+|+.+|.+.||++.|||||+
T Consensus 422 ~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~ 501 (526)
T cd03339 422 LAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETL 501 (526)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecH
Confidence 346678889999999999999 99999 9999999999999999999999643 6679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhc
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVS 114 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~ 114 (137)
.||+++++.|+++|++|||||++|.
T Consensus 502 ~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 502 ISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHHHHHHHHHHhhhceecC
Confidence 9999999999999999999999874
No 25
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.86 E-value=2.2e-21 Score=170.38 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=97.5
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-++++ ..++|++|+++++| ||++| |+||+|||+|+.+++.+++..| ..++|+|+.+|.+.||.+.|||||+.|
T Consensus 424 ~L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~v 499 (542)
T PRK00013 424 ALEAL-KGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKV 499 (542)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHH
Confidence 45666 78899999999999 99999 9999999999999999999888 357899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~ 125 (137)
|.++|+.|+++|++||+||++|..+|.+...+|+
T Consensus 500 k~~al~~A~~~a~~iL~id~iI~~~~~~~~~~~~ 533 (542)
T PRK00013 500 TRSALQNAASVAGLLLTTEAVVADKPEKKAAAPP 533 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 9999999999999999999999998866555443
No 26
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.85 E-value=3.6e-21 Score=168.37 Aligned_cols=101 Identities=24% Similarity=0.260 Sum_probs=94.7
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCC-CceeeeeccCcchhhhhhhCccccHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDG-ETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G-~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
-+++++..++|.+|+++++| ||++| ++|++|+|+|+.+++.+++..|..+ +.++|+|+.+|.+.||++.|||||+.
T Consensus 427 ~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~ 506 (532)
T TIGR02343 427 AVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLI 506 (532)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHH
Confidence 45678889999999999999 99999 9999999999999999999999754 66799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
||.++++.|+|+|++|||||++|..
T Consensus 507 vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 507 GKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999999999999999999964
No 27
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.84 E-value=1.7e-20 Score=165.10 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=99.0
Q ss_pred hhHHHHhh--cCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCcccc
Q psy2834 14 KDENQNQA--AQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEP 88 (137)
Q Consensus 14 ~~~~~~a~--~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP 88 (137)
+-+.+++. .++|++|+++++| ||++| ++||+|||+|+.+++.++++ .+..++|+|+.+|.+.||.+.|||||
T Consensus 436 ~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp 512 (555)
T PTZ00114 436 KLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDP 512 (555)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeC
Confidence 34666775 6889999999999 99999 99999999999999999976 45667999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCC
Q psy2834 89 LTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQA 127 (137)
Q Consensus 89 ~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~ 127 (137)
+.||.++|+.|+++|++||+||++|...|......+++.
T Consensus 513 ~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~~~~~~~ 551 (555)
T PTZ00114 513 TKVVRSALVDAASVASLMLTTEAAIVDLPKEKKKNKNSA 551 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhCCcccccccCCC
Confidence 999999999999999999999999999887655555443
No 28
>KOG0362|consensus
Probab=99.84 E-value=5.5e-21 Score=164.62 Aligned_cols=117 Identities=24% Similarity=0.329 Sum_probs=107.2
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCc-chhhhhhhCccccH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETG-DLVDMKTLGIWEPL 89 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g-~i~d~~e~gV~dP~ 89 (137)
|-+.+++.+++|.+|||+++| ||+.+ |+||+|+|++..|++.++...|..|. +.|+++... ...|+.+.||||-+
T Consensus 416 k~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~-~~g~di~~e~~~~d~~~~~i~D~~ 494 (537)
T KOG0362|consen 416 KQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGK-NLGMDIEAEGGTIDVREEGIWDTL 494 (537)
T ss_pred HHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCC-cceeeeeccccccChhhhchHHHH
Confidence 667889999999999999999 99999 99999999999999999999998444 478888776 58999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCCCCCCh
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQPTE 132 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~~~~~~ 132 (137)
.+|.++|+.|+++|+++|++|+||++++++++++| ++.+||+
T Consensus 495 ~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~-~~~~~d~ 536 (537)
T KOG0362|consen 495 AVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPP-GKKPDDE 536 (537)
T ss_pred HHHHHHHHHHHhhhheeeehhheeEecccCCCCCC-CCCCCCC
Confidence 99999999999999999999999999999999999 4447775
No 29
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.83 E-value=1.7e-20 Score=160.84 Aligned_cols=101 Identities=35% Similarity=0.440 Sum_probs=95.8
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+.+++++...++.+++++++| ||+.| ++|++|||+|+.+++.+++..|..+..++|+|+.+|++.||.+.|||||+.
T Consensus 361 ~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~ 440 (464)
T cd00309 361 KALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLK 440 (464)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHH
Confidence 457788888999999999999 99999 999999999999999999999988777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhc
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVS 114 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~ 114 (137)
||.++++.|+++|++||+||++|+
T Consensus 441 vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 441 VKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999984
No 30
>CHL00093 groEL chaperonin GroEL
Probab=99.83 E-value=2.2e-20 Score=163.50 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=92.8
Q ss_pred hhHHHHhh-cCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccH
Q psy2834 14 KDENQNQA-AQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPL 89 (137)
Q Consensus 14 ~~~~~~a~-~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~ 89 (137)
+-|++++. ..+|++|+++++| ||++| ++||+|||+|+.+++.+++.. ..++|+|+.+|.+.||++.|||||+
T Consensus 423 ~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~ 498 (529)
T CHL00093 423 ENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPA 498 (529)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcH
Confidence 34677887 7999999999999 99999 999999999999999999753 3479999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 90 TVKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 90 ~vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
.||.++|+.|+++|++||+||++|..+|
T Consensus 499 ~vk~~al~~A~e~a~~iL~id~ii~~~~ 526 (529)
T CHL00093 499 KVTRSALQNAASIASMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999876
No 31
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.6e-20 Score=160.36 Aligned_cols=103 Identities=31% Similarity=0.396 Sum_probs=93.5
Q ss_pred HHHHhhcCCC-hhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcch-hhhhhhCccccHH
Q psy2834 16 ENQNQAAQPT-EEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDL-VDMKTLGIWEPLT 90 (137)
Q Consensus 16 ~~~~a~~~~g-~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i-~d~~e~gV~dP~~ 90 (137)
|++++.+.+| .+|+++++| |||.| ++||+|||+|+++++.+|++.|. ++++|+|+.+|++ .||.+.|||||+.
T Consensus 411 L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~~~dm~~~GI~dP~~ 488 (524)
T COG0459 411 LREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEYEDDMIEAGIIDPLK 488 (524)
T ss_pred HHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCccccchHhccCcChHH
Confidence 4455445666 999999999 99999 99999999999999999999876 4558999999988 7799999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCcCCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSKKKK 120 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~ 120 (137)
||.++++.|+++|.++|+||++|.++|.+.
T Consensus 489 v~~~al~~A~e~a~llL~~d~iI~~~~~~~ 518 (524)
T COG0459 489 VKRSALKNAAEAAGLLLTIDDIIAAKPEEK 518 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999998764
No 32
>PRK14104 chaperonin GroEL; Provisional
Probab=99.81 E-value=1.4e-19 Score=159.22 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=94.6
Q ss_pred HHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHH
Q psy2834 16 ENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVK 92 (137)
Q Consensus 16 ~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK 92 (137)
++++ ...+|++++++++| ||++| ++||+|+|+|+.+++.+++..| ..++|+|+.+|.+.||.+.|||||+.||
T Consensus 426 L~~~-~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk 501 (546)
T PRK14104 426 LKGI-KTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVV 501 (546)
T ss_pred HHHh-hcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHH
Confidence 4445 34689999999999 99999 9999999999999999998653 4568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCC
Q psy2834 93 LQVYKTAVETAILLLRIDDIVSGSKKKKDENQN 125 (137)
Q Consensus 93 ~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~ 125 (137)
.++|+.|+++|++||+||++|...|.++..++.
T Consensus 502 ~~al~~A~~~a~~iL~id~~I~~~~~~~~~~~~ 534 (546)
T PRK14104 502 RTAIQNAASVAALLITTEAMVAELPKKGGAGPA 534 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCCC
Confidence 999999999999999999999988866666554
No 33
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.81 E-value=2e-19 Score=159.78 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=95.9
Q ss_pred hHHHHhhcCCChhHHH-HHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 15 DENQNQAAQPTEEQYP-ASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~-i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
-+.+++..+.+.+|++ +..| ||++| |+||+|||+|+.+++.+++.. ++.++|+|+.+|.+.||.+.|||||+.
T Consensus 479 ~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~ 555 (600)
T PLN03167 479 KVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTK 555 (600)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHH
Confidence 4667888889999966 7777 99999 999999999999999999743 356799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCcCCCCCCCCCCCC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSKKKKDENQNQAAQ 129 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~~~~~~~~ 129 (137)
||+++|+.|+++|++||+||++|..++......++..||
T Consensus 556 Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~~~~~~~~ 594 (600)
T PLN03167 556 VVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNPMD 594 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC
Confidence 999999999999999999999999976554433333343
No 34
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.80 E-value=2.8e-19 Score=156.41 Aligned_cols=97 Identities=26% Similarity=0.372 Sum_probs=89.1
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-+++ +...+|+++|++++| ||++| ++||+|||+|+.+++.+++.. ++ .+|+|+.+|.+.||.+.|||||+.|
T Consensus 423 ~L~~-~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~v 497 (524)
T TIGR02348 423 ALEG-LKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKV 497 (524)
T ss_pred HHHH-hccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHH
Confidence 4555 678899999999999 99999 999999999999999999865 44 3899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGS 116 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~ 116 (137)
|.+++++|+++|++||+||++|...
T Consensus 498 k~~al~~A~~~a~~iL~id~ii~~~ 522 (524)
T TIGR02348 498 TRSALQNAASIAGLLLTTEAVVADK 522 (524)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhcC
Confidence 9999999999999999999999754
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.80 E-value=1.8e-19 Score=153.31 Aligned_cols=103 Identities=32% Similarity=0.475 Sum_probs=97.7
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
.-|++++.+.++.+++++++| ||+.| ++|++|+|+++.+++.++...|..++ ++|+|+.+|++.||.+.|||||+.
T Consensus 380 ~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~-~~g~d~~~~~i~~~~~~gi~dp~~ 458 (485)
T PF00118_consen 380 KALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGN-NYGIDLDTGEIVDMKEAGILDPLL 458 (485)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTT-TEEEETTTTEEEETTTTTCEEEHH
T ss_pred hhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcccc-ccCcCccCCceeccccccchhhHH
Confidence 457888999999999999999 99999 99999999999999999999987765 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCc
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSK 117 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~ 117 (137)
+|.++++.|+++|++|||||++|.++|
T Consensus 459 ~k~~~l~~A~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 459 VKISALKSAVEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999875
No 36
>KOG0358|consensus
Probab=99.79 E-value=1.2e-19 Score=153.50 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=97.6
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-|..+|++..|.+.|++++| |||+| .+||+|||++++.++.+||++|.+|+..+||++..|.+.|+.+..|..|+.|
T Consensus 430 ~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllV 509 (534)
T KOG0358|consen 430 RLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLV 509 (534)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceee
Confidence 46788999999999999999 99999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
-.+++++|+|++.+||+||+|+.+
T Consensus 510 s~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 510 SISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred eHHHHHHHHHHHHHHhhhhhhccc
Confidence 999999999999999999999865
No 37
>KOG0357|consensus
Probab=99.79 E-value=1.9e-19 Score=149.81 Aligned_cols=104 Identities=24% Similarity=0.236 Sum_probs=96.7
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhh-CCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVG-DGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~-~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
-|.+.|..++|.|||++++| |||.| .+||+|+|++|++.++.++..+- .++.++|||++.-+-.||++.+|+||+.
T Consensus 291 av~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~ 370 (400)
T KOG0357|consen 291 AVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLI 370 (400)
T ss_pred HhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhh
Confidence 46788999999999999999 99999 99999999999999999998875 5778899999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVSGSKK 118 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~~~~~ 118 (137)
.|++.+.+||..+.|||+||+|++....
T Consensus 371 ~KkqQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 371 GKKQQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred hhHHHHHHHHHHHHHhhhccceecCCCC
Confidence 9999999999999999999999887543
No 38
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.78 E-value=4.1e-19 Score=155.30 Aligned_cols=96 Identities=25% Similarity=0.318 Sum_probs=90.4
Q ss_pred hhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHH
Q psy2834 14 KDENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLT 90 (137)
Q Consensus 14 ~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~ 90 (137)
+-+++++. .+|++|+++++| ||++| ++||+|||+|+.+++.++++.|. ++|+|+.+|.+.||.+.|||||+.
T Consensus 421 ~~L~~~~~-~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~ 495 (520)
T cd03344 421 PALDKLKA-LNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTK 495 (520)
T ss_pred HHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHH
Confidence 45677887 999999999999 99999 99999999999999999998765 689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhc
Q psy2834 91 VKLQVYKTAVETAILLLRIDDIVS 114 (137)
Q Consensus 91 vK~~~i~~Ate~A~~ILrID~iI~ 114 (137)
||.++++.|+++|++||+||.+|.
T Consensus 496 vk~~~l~~A~~~a~~iL~id~~i~ 519 (520)
T cd03344 496 VVRSALQNAASVASLLLTTEALVV 519 (520)
T ss_pred HHHHHHHHHHHHHHHHHhhheEEe
Confidence 999999999999999999998875
No 39
>KOG0364|consensus
Probab=99.64 E-value=2.1e-16 Score=135.28 Aligned_cols=106 Identities=45% Similarity=0.609 Sum_probs=100.3
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
-|.+.++...|.+++.+.+. |||+| |+|++|+|-+++..++.+++.|..|...+|++..+|.+.||.+.++|+|+.+
T Consensus 417 ~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~v 496 (527)
T KOG0364|consen 417 ELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAV 496 (527)
T ss_pred HHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhh
Confidence 46778889999999999999 99999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcCCC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKKKK 120 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~~~ 120 (137)
|.|.+++|.++++++||||+|+...+...
T Consensus 497 K~Q~~ktavesa~~LLRIddIvsg~kk~v 525 (527)
T KOG0364|consen 497 KLQTGKTAVESACLLLRIDDIVSGKKKRV 525 (527)
T ss_pred hhhhhhHHHHHHHHHHhhhceeeeeeecc
Confidence 99999999999999999999998876553
No 40
>KOG0359|consensus
Probab=99.55 E-value=1.5e-14 Score=123.76 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=93.9
Q ss_pred hHHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHH
Q psy2834 15 DENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTV 91 (137)
Q Consensus 15 ~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~v 91 (137)
++...-.+.+|+.++++++| ||++| |+|+.|+|+|.++.+.++..+|..+ .+|+|+.+|+.++....||||.+.|
T Consensus 413 ~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi~Dny~v 490 (520)
T KOG0359|consen 413 HLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGIYDNYSV 490 (520)
T ss_pred HHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccccchHHH
Confidence 44555567899999999999 99999 9999999999999999999999877 3599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhcCCcC
Q psy2834 92 KLQVYKTAVETAILLLRIDDIVSGSKK 118 (137)
Q Consensus 92 K~~~i~~Ate~A~~ILrID~iI~~~~~ 118 (137)
|.+.+++++-.|+.+|.+|+|++++..
T Consensus 491 ~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 491 KKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999998764
No 41
>KOG0360|consensus
Probab=99.43 E-value=3.8e-14 Score=122.30 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=98.7
Q ss_pred HHHHhhcCCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhC--------CCceeeeeccCcchhhhhhhC
Q psy2834 16 ENQNQAAQPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGD--------GETTFGINGETGDLVDMKTLG 84 (137)
Q Consensus 16 ~~~~a~~~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~--------G~~~~GVdl~~g~i~d~~e~g 84 (137)
++.+|.+++.+||.++..| ||.+| ++|+-|++.|..|++.+++..|.. +-.++|+++.+|.+.++++.|
T Consensus 425 le~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g 504 (545)
T KOG0360|consen 425 LENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAG 504 (545)
T ss_pred HHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeee
Confidence 6789999999999999999 99999 999999999999999999998852 235789999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhchhhhhcCCcCCCCC
Q psy2834 85 IWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122 (137)
Q Consensus 85 V~dP~~vK~~~i~~Ate~A~~ILrID~iI~~~~~~~~~ 122 (137)
+++|..+|...++.|+|+|..|||||+.|.-.|..+.+
T Consensus 505 ~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~~ 542 (545)
T KOG0360|consen 505 SFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQVA 542 (545)
T ss_pred eeccceeehhhhHHHHHhhhhhcchhhhhhcCcccccc
Confidence 99999999999999999999999999999987766554
No 42
>KOG0356|consensus
Probab=98.25 E-value=2.1e-06 Score=75.66 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=85.0
Q ss_pred CCChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhhhCccccHHHHHHHHHHH
Q psy2834 23 QPTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTA 99 (137)
Q Consensus 23 ~~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e~gV~dP~~vK~~~i~~A 99 (137)
-...++.+++.+ ||..+ ++++.|||.+.-.++.++.. + .+|++..+++..|+.+.|++||..|-..++..|
T Consensus 447 ~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---~---~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a 520 (550)
T KOG0356|consen 447 NNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---D---DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDA 520 (550)
T ss_pred cchHhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---h---hhhhhhhcccHHHHHhccCCChHHHHHHhhhhh
Confidence 345677889999 99999 99999999999999999982 1 689999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCcCCCCCCC
Q psy2834 100 VETAILLLRIDDIVSGSKKKKDENQ 124 (137)
Q Consensus 100 te~A~~ILrID~iI~~~~~~~~~~~ 124 (137)
...|..++..+-+|...|.+..+++
T Consensus 521 ~~vasll~tte~vvteipk~~~~~~ 545 (550)
T KOG0356|consen 521 AGVASLLTTTEAVVTEIPKEEAGNP 545 (550)
T ss_pred hHHHHHHhhheeEEEeccccccCCC
Confidence 9999999999999988887764433
No 43
>KOG0361|consensus
Probab=93.18 E-value=0.088 Score=45.94 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=50.1
Q ss_pred HHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834 41 AAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL 107 (137)
Q Consensus 41 ~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL 107 (137)
-+.+.+++.+.++...|++++++|+|++ .+++++++... +.|| +|.. .+.+|+.|...+..-|
T Consensus 70 divhPaaktlVdia~sQDaEVGDGTTSV--v~la~E~lk~~Kpfiedgv-~~~~-iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 70 DIVHPAAKTLVDIARSQDAEVGDGTTSV--VLLAAEFLKEAKPFIEDGV-HPQL-IIRAYRKARQLAVEKI 136 (543)
T ss_pred hhcChhHHHHHHHHhhccccccCCceeE--eeeHHHHHHhhhhHhhcCC-CHHH-HHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999875 88899887554 5788 8877 4678888887776654
No 44
>KOG0364|consensus
Probab=93.01 E-value=0.094 Score=46.16 Aligned_cols=64 Identities=39% Similarity=0.570 Sum_probs=54.3
Q ss_pred HHHhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 41 AAGKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 41 ~La~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
..|+.|+...+++...+++++++|+|++ .++.|++++.. +.++ ||.. ..+++..|.|.++..+.
T Consensus 69 ~Vahpaaksmiel~rtqdeevgdgttsv--i~lagE~L~~~~~~l~~~~-Hp~~-i~ka~~~aled~~~~~~ 136 (527)
T KOG0364|consen 69 DVAHPAAKSMIELSRTQDEEVGDGTTSV--IILAGEMLNVAEPFLEEGI-HPTV-IIKAYIKALEDNIRALD 136 (527)
T ss_pred hhcCcchhhHhhhhhcccccccCCceee--eeehHHHhhhcchhhhcCc-chHH-HHHHHHHHHHHHHHHHH
Confidence 6678899999999999999999999886 78889988765 4677 8887 58889999998888775
No 45
>KOG0358|consensus
Probab=92.36 E-value=0.2 Score=43.65 Aligned_cols=62 Identities=27% Similarity=0.422 Sum_probs=51.6
Q ss_pred HhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 43 GKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 43 a~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
.+.++..+.++...|+.+.+||++++ .+..|.+++.. +.|| ||.. ....|+.|...+..||.
T Consensus 78 lhP~akmLvelS~aQD~eaGDGTTsV--VilaGaLL~~~~~LL~kgi-HPtv-Isdsfq~a~~~~v~il~ 143 (534)
T KOG0358|consen 78 LHPAAKMLVELSAAQDSEAGDGTTSV--VILAGALLEAAEKLLQKGI-HPTV-ISDSFQSAAKKAVDILD 143 (534)
T ss_pred hChHHHHHHHhhhhccccccCCceEE--EEehhhHHHHHHHHHhcCC-Cchh-hhHHHHHHHHHHHHHHH
Confidence 35678888999999999999999876 88889877654 5888 9987 58889999999988884
No 46
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=92.34 E-value=0.15 Score=44.53 Aligned_cols=58 Identities=43% Similarity=0.682 Sum_probs=48.9
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLL 107 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~IL 107 (137)
++..+.++...|+.+.+||++++ .++.|+++.. .+.|+ +|.. ..++|+.|.+.+..+|
T Consensus 71 ~a~ll~~~a~~q~~~~GDGTtt~--vvL~~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L 132 (480)
T cd03337 71 AAKSMIELSRTQDEEVGDGTTSV--IILAGEILAVAEPFLERGI-HPTV-IIKAYRKALEDALKIL 132 (480)
T ss_pred HHHHHHHHHHhHHHHhCCCcchh--HhhHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHH
Confidence 55668889999999999999886 7788887755 46788 9998 5899999999998888
No 47
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.12 Score=46.02 Aligned_cols=61 Identities=36% Similarity=0.476 Sum_probs=50.5
Q ss_pred hccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 44 KYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 44 ~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+.+++.+.++..+++.+++||+|++ .++.++++.. .+.|+ +|.. .+..|+.|.+.+...|+
T Consensus 64 hp~akll~eva~~qd~e~GDGTTta--vVLa~all~ea~~li~~gi-~P~~-I~~G~~~A~~~~~e~l~ 128 (524)
T COG0459 64 HPGAKLLVEVAKKQDDEAGDGTTTA--VVLAGALLKEAEKLIAAGI-HPTV-IKRGYRLAVEKAVEELK 128 (524)
T ss_pred CchhHHHHHHHHHHHHHhcCchHHH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 4466778899999999999999986 7778877544 46888 9998 48899999999998884
No 48
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=92.17 E-value=0.092 Score=46.37 Aligned_cols=61 Identities=28% Similarity=0.471 Sum_probs=50.4
Q ss_pred hccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 44 KYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 44 ~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+.++..+.++...|+.+.+||++++ .++.|+++.. .+.|+ +|..+ .++|+.|.+.+..+|.
T Consensus 69 hP~akll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-hp~~I-i~g~~~a~~~~~~~L~ 133 (519)
T TIGR02341 69 NPAAKVLVDMSKVQDDEVGDGTTSV--TVLAAELLREAEKLVNQKI-HPQTI-ISGYRRATKAAQEALK 133 (519)
T ss_pred ChHHHHHHHHHHHhHhhhCCchhHH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 3466678889999999999999986 7888887754 35788 99984 8999999999999883
No 49
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=91.75 E-value=0.14 Score=45.42 Aligned_cols=59 Identities=25% Similarity=0.504 Sum_probs=49.0
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...++.+.+||+|++ .+++++++.. .+.|+ +|..+ .+.|+.|.+.+...|+
T Consensus 73 ~akll~e~a~sqd~~~GDGTTt~--vvLa~~Ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~ 135 (531)
T TIGR02346 73 AAKLLVMASEMQENEIGDGTNLV--IVLAGELLDKAEELIRMGL-HPSEI-IKGYEQALKKAMEVLE 135 (531)
T ss_pred HHHHHHHHHHHHhhhhCCChhhH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 44668888999999999999886 7888887744 46888 99985 8889999999999884
No 50
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=91.68 E-value=0.14 Score=45.17 Aligned_cols=60 Identities=30% Similarity=0.475 Sum_probs=49.8
Q ss_pred ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
.++..+.++...|+.+.+||++++ .+++|+++... +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus 62 P~akll~~~a~~q~~~~GDGTTt~--vvLa~~ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~ 125 (527)
T cd03335 62 PAAKILVELAQLQDKEVGDGTTSV--VIIAAELLKRANELVKQKI-HPTTI-ISGYRLACKEAVKYIK 125 (527)
T ss_pred hHHHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 355778889999999999999986 77888876553 5788 99984 8999999999999984
No 51
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=91.62 E-value=0.13 Score=45.23 Aligned_cols=59 Identities=41% Similarity=0.644 Sum_probs=49.3
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+++||++++ .++.++++... +.|+ +|.. ..++|+.|.+.+..+|.
T Consensus 71 ~akll~~~a~~q~~~~GDGTtt~--viLa~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~ 133 (525)
T TIGR02344 71 AAKSMIELSRTQDEEVGDGTTSV--IILAGEMLSVAEPFLEQNI-HPTI-IIRAYKKALDDALSVLE 133 (525)
T ss_pred HHHHHHHHHHhhhhhccCCcchh--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 56678888999999999999886 78888877554 5788 9998 58999999999998883
No 52
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=91.52 E-value=0.11 Score=45.91 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=49.2
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+++||++++ .+++|+++... +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus 67 ~a~ll~~~a~~qd~e~GDGTTtv--viLa~~Ll~~~~~li~~gi-~p~~-I~~G~~~a~~~~~~~L~ 129 (520)
T cd03344 67 GAQLVKEVASKTNDVAGDGTTTA--TVLARAIIKEGLKAVAAGA-NPMD-LKRGIEKAVEAVVEELK 129 (520)
T ss_pred HHHHHHHHHhhhccccCCCcchH--HHHHHHHHHHHHHHHhCCC-CchH-HHHHHHHHHHHHHHHHH
Confidence 55678888999999999999886 78888886553 5788 9987 58999999999999883
No 53
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=91.46 E-value=0.15 Score=44.91 Aligned_cols=59 Identities=34% Similarity=0.582 Sum_probs=49.0
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...++.+.+||++++ .+++++++.. .+.|+ +|..+ .+.|+.|.+.+...|+
T Consensus 72 ~a~ll~~~a~~q~~~~GDGTTt~--vvLa~~Ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~ 134 (522)
T TIGR02345 72 AAKTLVDIAKSQDSEVGDGTTSV--VILAGELLKEAKPFIEEGV-HPQLI-IRCYREALMLAIEKLK 134 (522)
T ss_pred HHHHHHHHHHHHHHHhCCCchhH--HHHHHHHHHhHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 46678888999999999999886 7788887654 35888 99985 8899999999999884
No 54
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=91.39 E-value=0.17 Score=44.67 Aligned_cols=58 Identities=33% Similarity=0.495 Sum_probs=48.5
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL 107 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL 107 (137)
++..+.++...|+.+.+||++++ .++.++++... +.|+ +|.. ..++|+.|.+.+..+|
T Consensus 64 ~akll~~~a~~qd~~~GDGTtt~--viLa~~Ll~~a~~li~~gi-~p~~-Ii~g~~~a~~~~~~~L 125 (517)
T TIGR02342 64 AAKMLVELSKAQDIEAGDGTTSV--VILAGALLGACETLLERGI-HPTT-ISESFQIAADEAIKIL 125 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHH
Confidence 45668889999999999999886 77888876543 5788 9998 5899999999998888
No 55
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=91.25 E-value=0.2 Score=44.45 Aligned_cols=59 Identities=31% Similarity=0.514 Sum_probs=48.9
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+.+||++++ .+++|+++... +.|+ +|.. ..++|+.|.+.+..+|+
T Consensus 82 ~akll~~~a~~qd~~~GDGTttv--vvLa~~Ll~~a~~li~~gi-hp~~-Ii~g~~~a~~~~~~~L~ 144 (532)
T TIGR02343 82 IAKLMVELSKSQDDEIGDGTTGV--VVLAGALLEQAEALLDKGI-HPIK-IAEGFEVAARVAVEHLE 144 (532)
T ss_pred HHHHHHHHHHHHHHHhcCCcccH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 45668888999999999999986 77788876553 4688 9987 58999999999999884
No 56
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=91.24 E-value=0.14 Score=45.58 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=47.2
Q ss_pred ccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 48 KSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 48 ~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
..+.++..+|+.+++||++++ .+++++++... +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus 72 ~ll~~~a~~qd~e~GDGTTt~--viLa~~LL~~a~~li~~Gi-hP~~-I~~G~~~a~~~~~~~L~ 132 (544)
T PRK12850 72 QMVKEVASKTNDLAGDGTTTA--TVLAQAIVREGAKLVAAGM-NPMD-LKRGIDLAVAAVVDELK 132 (544)
T ss_pred HHHHHHHhhhcchhcCCcchH--HHHHHHHHHHHHHHHHCCC-ChHH-HHHHHHHHHHHHHHHHH
Confidence 566788889999999999886 77888886553 4788 9997 58999999999999883
No 57
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=91.24 E-value=0.18 Score=44.90 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=48.9
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL 107 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL 107 (137)
++..+.++...++.+++||++++ .++.++++... +.|+ +|.. ..+.|+.|.+.+...|
T Consensus 70 ~akll~~~a~~qd~e~GDGTTtv--viLa~~LL~~a~~li~~Gi-hp~~-I~~G~~~a~~~~~~~L 131 (541)
T PRK12851 70 GAQMVREVASKTNDVAGDGTTTA--TVLAQAIVREGAKAVAAGA-NPMD-LKRGIDRAVAAVVEEL 131 (541)
T ss_pred HHHHHHHHHHhhhHhhCCCccHH--HHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHHH
Confidence 55678889999999999999886 77888877653 5677 9998 4899999999999888
No 58
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=91.14 E-value=0.14 Score=45.03 Aligned_cols=59 Identities=31% Similarity=0.456 Sum_probs=49.4
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+.+||++++ .++.|+++... +.|+ +|.. ..++|+.|.+.+..+|.
T Consensus 70 ~akll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~ 132 (517)
T cd03336 70 AAKVLVDISKVQDDEVGDGTTSV--TVLAAELLREAEKLVAQKI-HPQT-IIEGYRMATAAAREALL 132 (517)
T ss_pred HHHHHHHHHHHHHhHhCCChhHH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 56678889999999999999986 78888876553 5688 9998 58999999999999883
No 59
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=91.14 E-value=0.1 Score=46.44 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=49.6
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+++||++++ .++.|+++... +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus 69 ~a~ll~~~a~~qd~e~GDGTTtv--viLageLL~~a~~li~~Gi-hP~~-I~~G~~~A~~~~~~~L~ 131 (542)
T PRK12849 69 GAQLVKEVASKTNDVAGDGTTTA--TVLAQALVQEGLKNVAAGA-NPMD-LKRGIDKAVEAVVEELK 131 (542)
T ss_pred HHHHHHHHHHhcCCccCCCccHH--HHHHHHHHHHHHHHHhCCC-ChHH-HHHHHHHHHHHHHHHHH
Confidence 46778889999999999999886 78889887554 4677 9998 58999999999999983
No 60
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=90.72 E-value=0.16 Score=45.02 Aligned_cols=59 Identities=34% Similarity=0.507 Sum_probs=49.4
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+.+||+|++ .++.|+++... +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus 82 ~akll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-~p~~-Ii~g~~~a~~~~~~~L~ 144 (533)
T PTZ00212 82 AAKILVDISKTQDEEVGDGTTSV--VVLAGELLREAEKLLDQKI-HPQT-IIEGWRMALDVARKALE 144 (533)
T ss_pred HHHHHHHHHHhhhhhhCCchhHH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 56678889999999999999986 78888876553 5688 9998 58999999999999883
No 61
>PTZ00114 Heat shock protein 60; Provisional
Probab=90.28 E-value=0.14 Score=45.62 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=48.6
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...++.+++||+|++ .++.++++... +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus 81 ~a~ll~~~a~~qd~evGDGTTtv--vvLa~~LL~~a~~li~~Gi-hP~~I-~~G~~~A~~~~~~~L~ 143 (555)
T PTZ00114 81 GAQLIRQVASKTNDKAGDGTTTA--TILARAIFREGCKAVAAGL-NPMDL-KRGIDLAVKVVLESLK 143 (555)
T ss_pred HHHHHHHHHHhhccccCCcccHH--HHHHHHHHHHHHHHHhCCC-ChHHH-HHHHHHHHHHHHHHHH
Confidence 45667788889999999999886 77888876553 5788 99984 8999999999999994
No 62
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=90.07 E-value=0.24 Score=43.84 Aligned_cols=59 Identities=27% Similarity=0.453 Sum_probs=49.0
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
.+..+.++...++.+.+||++++ .+++++++... +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 67 ~akll~~~a~~qd~~~GDGTTt~--viLa~~Ll~~a~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~ 129 (536)
T TIGR02340 67 AAKILVELAQLQDREVGDGTTSV--VIIAAELLKRADELIKRKV-HPTS-IISGYRLACKEAVKYIK 129 (536)
T ss_pred HHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 45678888999999999999986 77888876553 4788 9998 48999999999999884
No 63
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=90.05 E-value=0.24 Score=43.73 Aligned_cols=59 Identities=31% Similarity=0.544 Sum_probs=48.6
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...|+.+.+||++++ .++.++++... +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus 78 ~akll~~~a~~q~~~~GDGTtt~--viLa~~ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~ 140 (526)
T cd03339 78 IAKLLVELSKSQDDEIGDGTTGV--VVLAGALLEQAEKLLDRGI-HPIRI-ADGYEQACKIAVEHLE 140 (526)
T ss_pred HHHHHHHHHHhhhhhhcCChhhH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 45678888999999999999986 77888876553 5688 99985 8899999999999883
No 64
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=89.86 E-value=0.21 Score=44.38 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=48.5
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..++++...|+.+.+||++++ .++.|+++... +.|+ +|.. ..+.|+.|.+.+..+|.
T Consensus 71 ~a~ll~~~a~~qd~~~GDGTTtv--vvLa~~Ll~~a~~li~~gi-hp~~-Ii~g~~~a~~~~~~~L~ 133 (531)
T TIGR02347 71 TASMIARAATAQDDITGDGTTST--VILIGELLKQAERYILEGI-HPRI-LTEGFEIARGELLEFLD 133 (531)
T ss_pred HHHHHHHHHHHhhhhhcCcHHHH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 45556688999999999999986 77888877554 4688 9998 58999999999999983
No 65
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=89.58 E-value=0.17 Score=44.90 Aligned_cols=59 Identities=25% Similarity=0.317 Sum_probs=48.4
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++.-+.++..+++.+++||++++ .++.++++... +.|+ +|.. ..+.|+.|.+.+...|.
T Consensus 68 ~akll~~~a~~qd~e~GDGTTtv--viLa~~Ll~~a~~li~~Gi-hP~~-Ii~G~~~A~~~~l~~L~ 130 (524)
T TIGR02348 68 GAQLVKEVASKTNDVAGDGTTTA--TVLAQAIVKEGLKNVAAGA-NPIE-LKRGIEKAVEAAVEELK 130 (524)
T ss_pred HHHHHHHHHHccCceeCCCcchH--HHHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 45667888889999999999886 78888877554 4677 9998 58999999999999883
No 66
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=89.28 E-value=0.31 Score=44.10 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=48.1
Q ss_pred CccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 47 G~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+..+.++..+++.+++||+|++ .++.++++... +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 126 akll~~~a~~qd~evGDGTTTv--vVLa~~LL~ea~~li~~Gi-~P~~-I~~G~~~A~~~~~~~L~ 187 (600)
T PLN03167 126 AKLVRQAAAKTNDLAGDGTTTS--VVLAQGLIAEGVKVVAAGA-NPVQ-ITRGIEKTAKALVKELK 187 (600)
T ss_pred HHHHHHHHHhhhhhhCCCccHH--HHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 5567788889999999999986 77888876553 4788 9998 58999999999999994
No 67
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=89.24 E-value=0.3 Score=43.03 Aligned_cols=59 Identities=31% Similarity=0.580 Sum_probs=49.1
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+++.+.++...++.+.+||++++ .+++++++... +.|+ +|..+ .+.|+.|.+.+...|.
T Consensus 71 ~akll~~~a~~q~~~~GDGTtt~--viL~~~ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~ 133 (522)
T cd03340 71 AAKTLVDIAKSQDAEVGDGTTSV--VVLAGEFLKEAKPFIEDGV-HPQII-IRGYRKALQLAIEKIK 133 (522)
T ss_pred HHHHHHHHHHHhHhHhCCChhHH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 46678888999999999999986 77888877553 4788 99985 8999999999999883
No 68
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=89.23 E-value=0.3 Score=42.96 Aligned_cols=59 Identities=37% Similarity=0.597 Sum_probs=48.6
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...++.+.+||++++ .++.++++... +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 71 ~a~ll~~~a~~qd~~~GDGTtt~--viL~~~ll~~~~~li~~gi-~p~~-Ii~g~~~a~~~~~~~L~ 133 (519)
T TIGR02339 71 AAKMLVEVAKTQDAEVGDGTTTA--VVLAGELLEKAEDLLEQGI-HPTV-IIEGYRKAAEKALEIID 133 (519)
T ss_pred HHHHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 56678888999999999999886 77788876553 5688 9998 58999999999998884
No 69
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=89.14 E-value=0.35 Score=42.45 Aligned_cols=59 Identities=29% Similarity=0.469 Sum_probs=48.5
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++...++.+.+||++++ .+++++++.. .+.|+ +|.. ..++|+.|.+.+...|+
T Consensus 63 ~a~ll~~~a~~q~~~~GDGTtt~--vvLa~~ll~~~~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~ 125 (515)
T cd03338 63 AAKMLVELSKAQDIEAGDGTTSV--VVLAGALLSACESLLKKGI-HPTV-ISESFQIAAKKAVEILD 125 (515)
T ss_pred HHHHHHHHHHHHHhHhcCCcchH--HHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 46667888999999999999886 7788887654 35788 9998 48999999999998883
No 70
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=88.96 E-value=0.23 Score=44.27 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=48.4
Q ss_pred CccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 47 G~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+..+.++...++.+++||++++ .+++++++... +.|+ ||.. ..+.|+.|.+.+...|.
T Consensus 70 akll~e~a~~qd~e~GDGTTtv--viLa~~LL~~a~~li~~Gi-~P~~-I~~G~~~A~~~~~~~L~ 131 (542)
T PRK00013 70 AQLVKEVASKTNDVAGDGTTTA--TVLAQAIVREGLKNVAAGA-NPMD-LKRGIDKAVEAAVEELK 131 (542)
T ss_pred HHHHHHHHHhcCcccCCccchH--HHHHHHHHHHHHHHHhcCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 5667888899999999999886 78888886553 4678 9998 58999999999999983
No 71
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=88.81 E-value=0.35 Score=42.15 Aligned_cols=59 Identities=25% Similarity=0.526 Sum_probs=48.8
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
.+..+.+++..++.+.+||++++ .++++++++. .+.|+ +|..+ .+.|+.|.+.+...|.
T Consensus 63 ~a~ll~~~a~~~~~~~GDGTTt~--vvL~~~Ll~~~~~li~~gi-~p~~I-i~g~~~a~~~~~~~L~ 125 (472)
T cd03341 63 AAKLLVMASQMQEEEIGDGTNLV--VVLAGELLEKAEELLRMGL-HPSEI-IEGYEKALKKALEILE 125 (472)
T ss_pred HHHHHHHHHHHHhhhhCCChhhH--HHHHHHHHHHHHHHHHcCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 45678888999999999999986 7788887755 46788 99986 6899999999988883
No 72
>PRK14104 chaperonin GroEL; Provisional
Probab=88.75 E-value=0.22 Score=44.47 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=48.3
Q ss_pred ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
..+..+.++..+++.+++||+|++ .++.++++... +.|+ +|..+ .+.|..|.+.+...|+
T Consensus 69 pgakll~e~a~~qd~e~GDGTTTv--vvLa~~LL~~a~~li~~Gi-~P~~I-~~G~~~A~~~~~~~L~ 132 (546)
T PRK14104 69 MGAQMVREVASKSADAAGDGTTTA--TVLAQAIVREGAKSVAAGM-NPMDL-KRGIDLAVEAVVADLV 132 (546)
T ss_pred hHHHHHHHHHHhhcccccCcccHH--HHHHHHHHHHHHHHHHCCC-CccHH-HHHHHHHHHHHHHHHH
Confidence 344557788889999999999886 77888876553 5788 99984 8999999999999983
No 73
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=88.48 E-value=0.33 Score=42.48 Aligned_cols=59 Identities=25% Similarity=0.337 Sum_probs=47.6
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..++++..+|+.+.+||++++ .++.++++... +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 67 ~a~l~~~~a~~qd~~~GDGTTt~--vvLa~~Ll~~a~~li~~gi-~P~~-I~~g~~~a~~~~~~~L~ 129 (484)
T cd03342 67 TASMIARAATAQDDITGDGTTSN--VLLIGELLKQAERYIQEGV-HPRI-ITEGFELAKNKALKFLE 129 (484)
T ss_pred HHHHHHHHHHHhhhHhCCChhhH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 44556678999999999999986 77788776443 4787 9998 58999999999999884
No 74
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=88.11 E-value=0.2 Score=44.65 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=48.9
Q ss_pred ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhh----hhhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDM----KTLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~----~e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
.+++.+.++..+++.+++||++++ .+++++++.. .+.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 69 p~akll~e~a~~q~~e~GDGTTtv--vvLa~eLL~~a~~li~~Gi-~P~~-I~~G~~~A~~~~l~~L~ 132 (545)
T PRK12852 69 MGAQMVREVASKTNDLAGDGTTTA--TVLAQAIVREGAKAVAAGM-NPMD-LKRGIDIAVAAVVKDIE 132 (545)
T ss_pred hHHHHHHHHHhhcCceecCCcchH--HHHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 345567888889999999999886 7888887755 35788 9998 48999999999999984
No 75
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=86.37 E-value=0.57 Score=40.45 Aligned_cols=60 Identities=38% Similarity=0.639 Sum_probs=47.9
Q ss_pred ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
.++.-+.++...++.+++||++++ .++.++++... +.|+ +|..+ .+.|+.|.+.+...|+
T Consensus 62 p~a~ll~~~~~~~~~~~GDGTtt~--viL~~~ll~~~~~li~~gi-~p~~I-~~g~~~a~~~~~~~L~ 125 (464)
T cd00309 62 PAAKLLVEVAKSQDDEVGDGTTTV--VVLAGELLKEAEKLLAAGI-HPTEI-IRGYEKAVEKALEILK 125 (464)
T ss_pred HHHHHHHHHHHHHHhHhCCchhHH--HHHHHHHHHHHHHHHHCCC-CHHHH-HHHHHHHHHHHHHHHH
Confidence 355667888999999999999886 77788776543 5688 99985 7799999999988874
No 76
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=85.58 E-value=0.59 Score=41.04 Aligned_cols=59 Identities=41% Similarity=0.588 Sum_probs=48.2
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
++..+.++..+++.+.+||++++ .++.++++... +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 70 ~a~ll~~~a~~q~~~~GDGTtt~--viLa~~ll~~~~~li~~gi-~p~~-I~~g~~~a~~~~~~~L~ 132 (517)
T cd03343 70 AAKMLVEVAKTQDEEVGDGTTTA--VVLAGELLEKAEDLLDQNI-HPTV-IIEGYRLAAEKALELLD 132 (517)
T ss_pred HHHHHHHHHHHHHHHhCCChhHH--HHHHHHHHHHHHHHHHcCC-ChHH-HHHHHHHHHHHHHHHHH
Confidence 56678888999999999999986 77788776543 5688 9987 48999999999988884
No 77
>CHL00093 groEL chaperonin GroEL
Probab=84.85 E-value=0.56 Score=41.65 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 50 MIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 50 ~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+.++..+++++.+||+|++ .++.|+++... +.|+ +|.. ..+.|+.|.+.+...|+
T Consensus 73 i~~~a~~~~~e~GDGTTtv--vvLa~eLL~~a~~li~~Gi-~P~~-I~~G~~~A~~~~l~~L~ 131 (529)
T CHL00093 73 IRQAASKTNDVAGDGTTTA--TVLAYAIVKQGMKNVAAGA-NPIS-LKRGIEKATQYVVSQIA 131 (529)
T ss_pred HHHHHHhcCceecCCCCHH--HHHHHHHHHHHHHHHHCCC-CHHH-HHHHHHHHHHHHHHHHH
Confidence 3345567777889999886 78888876553 5787 9998 58899999999999884
No 78
>KOG0363|consensus
Probab=79.19 E-value=0.58 Score=40.75 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=46.6
Q ss_pred cCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhh---hCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 46 TGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKT---LGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 46 aG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e---~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
+++-++++..-|+.++++|+|++ .++..+++...+ ..=++|.. ....|+.|+.+|...|+
T Consensus 75 aAkvLv~~S~vQD~EvGDGTTSV--~vlaaeLlreAeklv~~kiHPq~-Ii~GyR~A~~~a~eaL~ 137 (527)
T KOG0363|consen 75 AAKVLVDISKVQDDEVGDGTTSV--TVLAAELLREAEKLVNQKIHPQT-IISGYRMATAAALEALT 137 (527)
T ss_pred hhhheeccccccccccCCCceeh--HHHHHHHHHHHHHHHhcccCcHH-HHHHHHHHHHHHHHHHH
Confidence 44556777888999999999876 677777765554 22339988 58999999999999986
No 79
>KOG0362|consensus
Probab=69.91 E-value=7 Score=35.06 Aligned_cols=65 Identities=28% Similarity=0.461 Sum_probs=50.4
Q ss_pred ccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhh----hCccccHHHHHHHHHHHHHHHHHHhchhhhhcC
Q psy2834 45 YTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKT----LGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG 115 (137)
Q Consensus 45 NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e----~gV~dP~~vK~~~i~~Ate~A~~ILrID~iI~~ 115 (137)
.+.+-+++...+|+.+.+||++++ .+++|+++...+ .|. .|.. ..+.|..|++.+..+|. +.+..
T Consensus 80 Paakllv~a~~~q~~~iGDgtnfv--vvla~~LLe~Ae~li~~Gl-~~~e-i~~gy~~A~~~~~e~l~--~lv~~ 148 (537)
T KOG0362|consen 80 PAAKLLVEATQMQEEEIGDGTNFV--VVLAGALLEQAEELIRMGL-TPAE-ISEGYETATKEALEILP--ELVVQ 148 (537)
T ss_pred cHHHHHHHHHHHHHHhhCCCceEe--ehhHHHHHHHHHHHHHcCC-CHHH-HHHHHHHHHHHHHHHhH--HHHHH
Confidence 366667777888888899998886 888998876554 688 7777 48999999999998884 54443
No 80
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=67.20 E-value=4.5 Score=34.55 Aligned_cols=57 Identities=30% Similarity=0.461 Sum_probs=44.1
Q ss_pred CccHHHHHHHHHHHhhCCCceeeeeccCcchhhhh----hhCccccHHHHHHHHHHHHHHHHHHh
Q psy2834 47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMK----TLGIWEPLTVKLQVYKTAVETAILLL 107 (137)
Q Consensus 47 G~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~----e~gV~dP~~vK~~~i~~Ate~A~~IL 107 (137)
+.-+.+.+..++...+||++++ .+++++++... +.|+ +|..+ .+.++.|...+...|
T Consensus 45 ~~ll~~~~~~~~~~~GDGtts~--vlL~~~ll~~~~~li~~gi-~p~~I-~~~~~~~~~~~~~~l 105 (485)
T PF00118_consen 45 AKLLVEASKSQDEEVGDGTTSV--VLLACELLRNALKLIKKGI-HPQEI-IRGLQEALKIILEYL 105 (485)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHH--HHHHHHHHHHHHHHHHTTS--HHHH-HHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHhhhcccccee--eecccchhhhhhhhhhccc-cccch-hhhhhhhhhhhhhhh
Confidence 4556778889999999998876 77788776554 4677 99984 889999998888777
No 81
>KOG0360|consensus
Probab=49.26 E-value=15 Score=32.95 Aligned_cols=62 Identities=31% Similarity=0.463 Sum_probs=43.3
Q ss_pred HhccCccHHHHHHHHHHHhhCCCceeeeeccCcchhhhhh----hCccccHHHHHHHHHHHHHHHHHHhc
Q psy2834 43 GKYTGKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKT----LGIWEPLTVKLQVYKTAVETAILLLR 108 (137)
Q Consensus 43 a~NaG~d~ieil~~l~~~~~~G~~~~GVdl~~g~i~d~~e----~gV~dP~~vK~~~i~~Ate~A~~ILr 108 (137)
-+.+++-++++...++.+.+||++++++. ..++++... .+| +|..+ ...|++|+.-+..+..
T Consensus 71 ~HPa~KiLvelaq~qd~evgDgttsvvii--a~eLl~~a~~Lv~~~i-hpt~i-i~gyr~ac~e~~k~i~ 136 (545)
T KOG0360|consen 71 EHPAAKVLVELAQLQDEEVGDGTTSVVII--AAELLKNADELVKTKI-HPTRI-ISGYRLACIEAVKYIT 136 (545)
T ss_pred cchHHHHHHHHHHhccccccCCceEEEEE--EHHhhhhHHHhhcCCC-cceeh-hhhHHHHHHHHHHHhh
Confidence 34577778888888999999999987544 345554443 455 89885 6677777766665543
No 82
>PF03012 PP_M1: Phosphoprotein; InterPro: IPR004259 This family includes the M1 phosphoprotein non-structural RNA polymerase alpha subunit (2.7.7.48 from EC) from various strains of Rabies virus []. The M1 phosphoprotein is thought to be a component of the active polymerase, and may be involved in template binding.; GO: 0003968 RNA-directed RNA polymerase activity, 0019083 viral transcription; PDB: 1VYI_A 3L32_B 3OA1_B 2WZL_A.
Probab=49.19 E-value=11 Score=31.34 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=28.6
Q ss_pred CcccccccCcccchhHHHHhhcCCChhHHHHHHH-HHhhh---HHHHhc
Q psy2834 1 MELDDIVSGSKKKKDENQNQAAQPTEEQYPASLV-ILEGK---TAAGKY 45 (137)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~g~e~~~i~af-aLe~I---k~La~N 45 (137)
|.|||||..++.---+..+|..=.-+--.+|.-| ||..= +.|+.|
T Consensus 233 MNLDDIVk~a~~vPGv~~~a~~G~kLPLRCiLG~Val~~SkrF~lLv~~ 281 (298)
T PF03012_consen 233 MNLDDIVKEAKNVPGVDRIAEDGGKLPLRCILGFVALDSSKRFQLLVNS 281 (298)
T ss_dssp --HHHHHHHHTTSTTHHHHHHTT----HHHHHHHHHHHH-HHHHHHB-H
T ss_pred ccHHHHHHHhcCCCchhHhhhccCcCchhheeeeeeeccccceeeeeCh
Confidence 7899999988887777777777666666777778 88776 355543
No 83
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.59 E-value=30 Score=23.36 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=29.0
Q ss_pred cccccCcccchhHHHHhhcCCChhHHHHHHH--HHhhh--HHHHh
Q psy2834 4 DDIVSGSKKKKDENQNQAAQPTEEQYPASLV--ILEGK--TAAGK 44 (137)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~g~e~~~i~af--aLe~I--k~La~ 44 (137)
++|-+.+-..+-..++-..++++.+.|+.+| ||..- ..||+
T Consensus 37 e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA~ 81 (84)
T cd08326 37 EEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLAE 81 (84)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHHH
Confidence 4555544445556777788899999999999 88765 45553
No 84
>PRK04027 30S ribosomal protein S7P; Reviewed
Probab=31.59 E-value=71 Score=25.24 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.3
Q ss_pred CChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHH
Q psy2834 24 PTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQ 57 (137)
Q Consensus 24 ~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l 57 (137)
.|+...|.+.+ ||+.| +.. |.++++++.+-
T Consensus 74 ~GKK~~A~~Iv~~AfeiI~~kT----~~nPiqVl~~A 106 (195)
T PRK04027 74 TGKKQKAYNIVKEAFEIIEKRT----KQNPIQVLVDA 106 (195)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHH
Confidence 49999999999 99999 432 67899987654
No 85
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=30.90 E-value=32 Score=23.45 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=27.0
Q ss_pred cccccCcccchhHHHHhhcCCChhHHHHHHH--HHhhh--HHHHh
Q psy2834 4 DDIVSGSKKKKDENQNQAAQPTEEQYPASLV--ILEGK--TAAGK 44 (137)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~g~e~~~i~af--aLe~I--k~La~ 44 (137)
+.|-+..-.+.-.+++-..++++.+.|+.+| ||+.- +.||+
T Consensus 35 e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 35 EKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHH
Confidence 3444444444445666677889999999999 88754 56664
No 86
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=29.29 E-value=41 Score=22.27 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=28.1
Q ss_pred ccccCcccchhHHHHhhcCCChhHHHHHHH--HHhhh-HHHHh
Q psy2834 5 DIVSGSKKKKDENQNQAAQPTEEQYPASLV--ILEGK-TAAGK 44 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~g~e~~~i~af--aLe~I-k~La~ 44 (137)
.|-+..-...+...+-..++.+.+.|+..| ||... +.||.
T Consensus 42 ~i~~~~t~~~~~~~Lld~l~~kG~~Af~~F~~~L~~~~~~La~ 84 (88)
T smart00114 42 AIKAATTKLRDKRELVDSLQKRGSQAFDTFLDSLQETDQKLAD 84 (88)
T ss_pred HHHccCChHHHHHHHHHHHHhHhHHHHHHHHHHHHHccHHHHH
Confidence 344444445555777777888888899888 88777 67764
No 87
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=22.97 E-value=62 Score=22.40 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=28.6
Q ss_pred ccccCcccchhHHHHhhcCCChhHHHHHHH--HHhhhHHHHhc
Q psy2834 5 DIVSGSKKKKDENQNQAAQPTEEQYPASLV--ILEGKTAAGKY 45 (137)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~g~e~~~i~af--aLe~Ik~La~N 45 (137)
+|-+.+-...-..++-.-+++..+.|+.+| ||..-++|+++
T Consensus 43 ~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~~l~~~ 85 (94)
T cd08327 43 EIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFPWVRDK 85 (94)
T ss_pred HHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHHHHHHH
Confidence 444444444555666777889999999999 88765777763
No 88
>TIGR01028 S7_S5_E_A ribosomal protein S7(archaeal)/S5(eukaryotic). This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes. A separate model describes bacterial and organellar S7.
Probab=21.91 E-value=1.3e+02 Score=23.52 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.1
Q ss_pred CChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHH
Q psy2834 24 PTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQ 57 (137)
Q Consensus 24 ~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l 57 (137)
.|+...|.+.| ||+.| +.. +.++++++.+-
T Consensus 65 ~GKK~~A~kIv~~A~~iI~~~t----~~nPi~vl~~A 97 (186)
T TIGR01028 65 NGKKLKAYRIVKEAFEIIEKRT----GENPIQVLVDA 97 (186)
T ss_pred CCcHHHHHHHHHHHHHHHHHHh----CCChHHHHHHH
Confidence 49999999999 99999 433 68898887653
No 89
>PTZ00091 40S ribosomal protein S5; Provisional
Probab=20.93 E-value=1.5e+02 Score=23.37 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=24.2
Q ss_pred CChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHH
Q psy2834 24 PTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQ 57 (137)
Q Consensus 24 ~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l 57 (137)
+|+...|.+.+ ||+.| ... +.++++++.+-
T Consensus 72 ~GKK~~A~~IV~~AfeiI~~~t----~~nPiqVl~~A 104 (193)
T PTZ00091 72 NGKKLLAVRIVKHAFEIIHLLT----DKNPLQVLVDA 104 (193)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH----CCChHHHHHHH
Confidence 49999999999 99999 433 67899887654
No 90
>COG0049 RpsG Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]
Probab=20.88 E-value=1.5e+02 Score=22.53 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=25.1
Q ss_pred CChhHHHHHHH--HHhhh-HHHHhccCccHHHHHHHHHH
Q psy2834 24 PTEEQYPASLV--ILEGK-TAAGKYTGKSMIEIARTQDE 59 (137)
Q Consensus 24 ~g~e~~~i~af--aLe~I-k~La~NaG~d~ieil~~l~~ 59 (137)
.|+...|...+ ||+.| +-. |.++++++.+--.
T Consensus 32 ~GKK~~A~~Ivy~Af~ii~~kT----g~~Piqvf~~Ai~ 66 (148)
T COG0049 32 DGKKSLAEKIVYGAFDIIEKKT----GQNPLQVFEKAIE 66 (148)
T ss_pred hccHHHHHHHHHHHHHHHHHHH----CCChHHHHHHHHH
Confidence 79999999998 99998 433 6779998876433
Done!