RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2834
(137 letters)
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 99.8 bits (249), Expect = 2e-25
Identities = 41/58 (70%), Positives = 48/58 (82%)
Query: 62 GDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
+G T+GI+GETG +VDMK GIWEPL VKLQ YKTA+E+A +LLRIDDIVSG KKK
Sbjct: 468 QEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVKKK 525
Score = 44.7 bits (106), Expect = 3e-06
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 16/67 (23%)
Query: 46 TGKSMIEIARTQDEEVGDGETTFGI-NGETGDLVDMKTLGIWEPL-------TVKLQVYK 97
KSMIE++RTQDEEVGDG T+ I GE L + EP T+ ++ YK
Sbjct: 71 AAKSMIELSRTQDEEVGDGTTSVIILAGE--------MLSVAEPFLEQNIHPTIIIRAYK 122
Query: 98 TAVETAI 104
A++ A+
Sbjct: 123 KALDDAL 129
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
family, gamma subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 480
Score = 98.5 bits (246), Expect = 4e-25
Identities = 37/53 (69%), Positives = 44/53 (83%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG 115
+T+GI+GETGD+VDMK LGIW+PL VK Q YKTA+E A +LLRIDDIVSG
Sbjct: 428 GENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVSG 480
Score = 47.3 bits (113), Expect = 4e-07
Identities = 16/20 (80%), Positives = 19/20 (95%)
Query: 48 KSMIEIARTQDEEVGDGETT 67
KSMIE++RTQDEEVGDG T+
Sbjct: 73 KSMIELSRTQDEEVGDGTTS 92
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
II. Chaperonins are involved in productive folding of
proteins. They share a common general morphology, a
double toroid of 2 stacked rings, each composed of 7-9
subunits. There are 2 main chaperonin groups. The
symmetry of type I is seven-fold and they are found in
eubacteria (GroEL) and in organelles of eubacterial
descent (hsp60 and RBP). The symmetry of type II is
eight- or nine-fold and they are found in archea
(thermosome), thermophilic bacteria (TF55) and in the
eukaryotic cytosol (CTT). Their common function is to
sequester nonnative proteins inside their central cavity
and promote folding by using energy derived from ATP
hydrolysis.
Length = 464
Score = 68.6 bits (169), Expect = 1e-14
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
+G G + ETG++VDMK GI +PL VK Q K+A E A L+L IDDI+
Sbjct: 413 EGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464
Score = 37.8 bits (89), Expect = 8e-04
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+A++QD+EVGDG TT
Sbjct: 63 AAKLLVEVAKSQDDEVGDGTTT 84
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family.
Length = 481
Score = 67.3 bits (165), Expect = 5e-14
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
GI+ +TG++ DMK GI +PL VK K+AVE A L+L ID I+
Sbjct: 427 KKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQIIK 478
Score = 32.2 bits (74), Expect = 0.056
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E A++QDEEVGDG TT
Sbjct: 44 AAKLLVEAAKSQDEEVGDGTTT 65
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
in productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
Archaeal cpn60 (thermosome), together with TF55 from
thermophilic bacteria and the eukaryotic cytosol
chaperonin (CTT), belong to the type II group of
chaperonins. Cpn60 consists of two stacked octameric
rings, which are composed of one or two different
subunits. Their common function is to sequester
nonnative proteins inside their central cavity and
promote folding by using energy derived from ATP
hydrolysis.
Length = 517
Score = 64.2 bits (157), Expect = 5e-13
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
G G++ TG++VDM G+ EPL VK Q K+A E A ++LRIDD+++
Sbjct: 465 GNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIA 515
Score = 37.2 bits (87), Expect = 0.001
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+A+TQDEEVGDG TT
Sbjct: 70 AAKMLVEVAKTQDEEVGDGTTT 91
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs [Protein fate,
Protein folding and stabilization].
Length = 519
Score = 59.7 bits (145), Expect = 2e-11
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
G GIN TG++ DM LG+ EPL VK Q K+A E A ++LRIDD+++
Sbjct: 467 KGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518
Score = 34.7 bits (80), Expect = 0.008
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+A+TQDEEVGDG TT
Sbjct: 71 AAKMLVEVAKTQDEEVGDGTTT 92
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
modification, protein turnover, chaperones].
Length = 524
Score = 58.0 bits (141), Expect = 7e-11
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 63 DGETTFGINGETGD-LVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
T +GI+ TG+ DM GI +PL VK K A E A LLL IDDI++ ++K
Sbjct: 460 HATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEEKK 519
Query: 122 E 122
Sbjct: 520 P 520
Score = 32.2 bits (74), Expect = 0.057
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+A+ QD+E GDG TT
Sbjct: 66 GAKLLVEVAKKQDDEAGDGTTT 87
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 57.0 bits (138), Expect = 2e-10
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
G T GI+ E G + DMK LGI E VKL +A E A ++LR+DDI+ + ++++
Sbjct: 474 GNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPRQRE 531
Score = 34.6 bits (80), Expect = 0.010
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 47 GKSMIEIARTQDEEVGDGETT 67
K +++I++TQDEEVGDG T+
Sbjct: 83 AKILVDISKTQDEEVGDGTTS 103
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, beta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 517
Score = 56.6 bits (137), Expect = 2e-10
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
+G TT G++ G + DMK LGI E VK QV +A E A ++LR+DDI+ + +K
Sbjct: 461 NGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAPRK 517
Score = 32.7 bits (75), Expect = 0.045
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 47 GKSMIEIARTQDEEVGDGETTFGING-----ETGDLVDMKTLGIWEPLTVKLQVYKTAVE 101
K +++I++ QD+EVGDG T+ + E LV K P T+ ++ Y+ A
Sbjct: 71 AKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKI----HPQTI-IEGYRMATA 125
Query: 102 TAILLLR---IDDIVSGSKKKKD 121
A L +D ++D
Sbjct: 126 AAREALLSSAVDHSSDEEAFRED 148
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 518
Score = 48.7 bits (116), Expect = 1e-07
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKK 120
+G +T G++ G + DM+ LGI E +K V +A E A +LLR+D+I+ + + +
Sbjct: 461 NGNSTMGLDMNEGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIKAAPRTR 518
Score = 30.6 bits (69), Expect = 0.26
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 48 KSMIEIARTQDEEVGDGETTFGING-----ETGDLVDMKTLGIWEPLTVKLQVYKTAVET 102
K ++ I++ QD+EVGDG T+ + E L++ K P T+ ++ Y+ A +
Sbjct: 72 KVLVNISKVQDDEVGDGTTSVTVLAAELLREAEKLINQKI----HPQTI-IEGYRLATKA 126
Query: 103 AILLLRIDDIVSGSKKKK 120
A+ L + + S K K
Sbjct: 127 ALDALTKSAVDNSSDKTK 144
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, delta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 515
Score = 45.7 bits (109), Expect = 1e-06
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
GE GIN G + ++ + +PL V A ET ++L+IDDIV
Sbjct: 463 QGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIV 513
Score = 30.7 bits (70), Expect = 0.20
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+++ QD E GDG T+
Sbjct: 63 AAKMLVELSKAQDIEAGDGTTS 84
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, eta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 522
Score = 44.2 bits (105), Expect = 5e-06
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 68 FGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
+G++ + D +WEP VK+ A E A L+L +D+ +
Sbjct: 472 YGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETI 517
Score = 34.6 bits (80), Expect = 0.009
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 47 GKSMIEIARTQDEEVGDGETT 67
K++++IA++QD EVGDG T+
Sbjct: 72 AKTLVDIAKSQDAEVGDGTTS 92
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 523
Score = 43.2 bits (102), Expect = 9e-06
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
G +G++ T D+ D +WEP VK+ K A E A +L +D+ +
Sbjct: 469 GGKWYGVDINTEDIGDNFENFVWEPALVKINALKAATEAACTILSVDETI 518
Score = 32.0 bits (73), Expect = 0.080
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 47 GKSMIEIARTQDEEVGDGETT 67
K++++IA++QD EVGDG T+
Sbjct: 74 AKTLVDIAKSQDSEVGDGTTS 94
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 527
Score = 41.1 bits (97), Expect = 5e-05
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 54 ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
A Q + +G++ G + D G+ EP K++ K A E AI +LRIDD++
Sbjct: 464 AAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLI 523
Score = 30.3 bits (69), Expect = 0.25
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 47 GKSMIEIARTQDEEVGDGETT 67
K ++E+A+ QD+EVGDG T+
Sbjct: 64 AKILVELAQLQDKEVGDGTTS 84
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 40.9 bits (96), Expect = 7e-05
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 54 ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
A Q + +G++ G + D K G+ EP K++ K A E AI +LRIDD++
Sbjct: 468 AAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLI 527
Query: 114 SGSKKKKDE 122
+ ++
Sbjct: 528 KLNPEQSKG 536
Score = 30.1 bits (68), Expect = 0.38
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 47 GKSMIEIARTQDEEVGDGETT 67
K ++E+A+ QD EVGDG T+
Sbjct: 68 AKILVELAQLQDREVGDGTTS 88
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, theta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 472
Score = 40.7 bits (96), Expect = 8e-05
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 63 DGETTFGINGETGD--LVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
G + G++ E+GD D K GI++ L K K A E A+ +LR+D I+
Sbjct: 417 KGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 38.2 bits (89), Expect = 6e-04
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
GE T GI+ G + +M + +PL V A ET +L+IDDIV
Sbjct: 465 GEKTAGISVRKGGITNMLEEHVLQPLLVTTSAITLASETVRSILKIDDIV 514
Score = 27.4 bits (61), Expect = 2.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+++ QD E GDG T+
Sbjct: 64 AAKMLVELSKAQDIEAGDGTTS 85
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
family, zeta subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin.
Length = 484
Score = 36.1 bits (84), Expect = 0.003
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
+E +G G++ +TG+ +D ++ GIW+ +VK Q+ +A A LL +D+I+ +
Sbjct: 426 DEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAGR 484
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 34.7 bits (80), Expect = 0.010
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 62 GDGETTFGINGETGD--LVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
G T+ GI+ E + D GI++ L K K A E A+ +LR+D I+
Sbjct: 464 KKGNTSKGIDIEAESDGVKDASEAGIYDMLATKKFAIKLATEAAVTVLRVDQII 517
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 33.2 bits (76), Expect = 0.032
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV-SGSK 117
+E +G G++ TG+ +D + GIW+ VK Q+ ++A A LL +D+++ +G
Sbjct: 469 DEHDEGGEVVGVDLNTGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528
Query: 118 KKK 120
K
Sbjct: 529 MLK 531
>gnl|CDD|184256 PRK13700, PRK13700, conjugal transfer protein TraD; Provisional.
Length = 732
Score = 32.2 bits (73), Expect = 0.063
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 4 DDIVSGSKKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIA-RTQDEEVG 62
+D+ + ++ + Q QP + Q P S VI + K+ AG IE + + EE
Sbjct: 614 EDVTQAEQPQQPQQPQQPQQPQQPQQPVSPVINDKKSDAGVNVPAGGIEQELKMKPEEEM 673
Query: 63 DGETTFGINGETGDLVDMKTLGIWE 87
+ + GI+ E+G++VDM W+
Sbjct: 674 EQQLPPGIS-ESGEVVDMAAYEAWQ 697
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 31.7 bits (72), Expect = 0.11
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 79 DMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
DMK ++E L K Q A + ++L+IDD++S
Sbjct: 495 DMKEQFVFETLIGKKQQILLATQLVRMILKIDDVIS 530
Score = 29.0 bits (65), Expect = 0.76
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 48 KSMIEIARTQDEEVGDGET 66
K M+E++++QD+E+GDG T
Sbjct: 84 KLMVELSKSQDDEIGDGTT 102
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 30.7 bits (70), Expect = 0.25
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAI----LLLRIDDIVSGSKKK 119
+ +FG + +TG+ V+M GI +P +V ++A+ A L+L + + K+
Sbjct: 488 KDPSFGYDAQTGEYVNMFEAGIIDP----TKVVRSALVDAASVASLMLTTEAAIVDLPKE 543
Query: 120 KDENQNQAAQP 130
K +N+N AA P
Sbjct: 544 KKKNKNSAAPP 554
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II)
chaperonin family, epsilon subunit. Chaperonins are
involved in productive folding of proteins. They share
a common general morphology, a double toroid of 2
stacked rings. In contrast to bacterial group I
chaperonins (GroEL), each ring of the eukaryotic
cytosolic chaperonin (CTT) consists of eight different,
but homologous subunits. Their common function is to
sequester nonnative proteins inside their central
cavity and promote folding by using energy derived from
ATP hydrolysis. The best studied in vivo substrates of
CTT are actin and tubulin.
Length = 526
Score = 30.3 bits (69), Expect = 0.31
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 47 GKSMIEIARTQDEEVGDGET 66
K ++E++++QD+E+GDG T
Sbjct: 79 AKLLVELSKSQDDEIGDGTT 98
Score = 28.8 bits (65), Expect = 0.84
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 79 DMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
DMK ++E L K Q A + ++L+IDD++
Sbjct: 491 DMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
involved in productive folding of proteins. They share a
common general morphology, a double toroid of 2 stacked
rings, each composed of 7-9 subunits. The symmetry of
type I is seven-fold and they are found in eubacteria
(GroEL) and in organelles of eubacterial descent (hsp60
and RBP). With the aid of cochaperonin GroES, GroEL
encapsulates non-native substrate proteins inside the
cavity of the GroEL-ES complex and promotes folding by
using energy derived from ATP hydrolysis.
Length = 520
Score = 29.7 bits (68), Expect = 0.42
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAI 104
E+V + FG + TG+ VDM GI +P +V ++A++ A
Sbjct: 464 EKVLESPDGFGYDAATGEYVDMIEAGIIDP----TKVVRSALQNAA 505
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 29.3 bits (66), Expect = 0.58
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
+V + FG N +TG+ DM GI +P V + A A LL+ + +V+ + K
Sbjct: 467 GKVAELPGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPK 526
Query: 119 KK 120
K
Sbjct: 527 KA 528
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 29.4 bits (66), Expect = 0.63
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 67 TFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
TFG + +T + VDM GI +P V + A A LL+ + +V+ KK
Sbjct: 476 TFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKDA 530
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 28.6 bits (65), Expect = 0.92
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
+V + E FG N TG+ D+ GI +P+ V + A A LLL + +V+ +
Sbjct: 466 AKVLELEDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPE 525
Query: 119 KKDE 122
++D
Sbjct: 526 EEDP 529
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 28.2 bits (63), Expect = 1.7
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 61 VGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKK 120
+ + +G N T + D+ G+ +P+ V + A A LLL + +V+ KK+
Sbjct: 469 LREKPGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKE 528
Query: 121 DENQNQAA 128
Sbjct: 529 PAPPAPPG 536
>gnl|CDD|100101 cd00349, Ribosomal_L11, Ribosomal protein L11. Ribosomal protein
L11, together with proteins L10 and L7/L12, and 23S
rRNA, form the L7/L12 stalk on the surface of the large
subunit of the ribosome. The homologous eukaryotic
cytoplasmic protein is also called 60S ribosomal protein
L12, which is distinct from the L12 involved in the
formation of the L7/L12 stalk. The C-terminal domain
(CTD) of L11 is essential for binding 23S rRNA, while
the N-terminal domain (NTD) contains the binding site
for the antibiotics thiostrepton and micrococcin. L11
and 23S rRNA form an essential part of the
GTPase-associated region (GAR). Based on differences in
the relative positions of the L11 NTD and CTD during the
translational cycle, L11 is proposed to play a
significant role in the binding of initiation factors,
elongation factors, and release factors to the ribosome.
Several factors, including the class I release factors
RF1 and RF2, are known to interact directly with L11. In
eukaryotes, L11 has been implicated in regulating the
levels of ubiquinated p53 and MDM2 in the MDM2-p53
feedback loop, which is responsible for apoptosis in
response to DNA damage. In bacteria, the "stringent
response" to harsh conditions allows bacteria to
survive, and ribosomes that lack L11 are deficient in
stringent factor stimulation.
Length = 131
Score = 27.0 bits (61), Expect = 2.5
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 70 INGETGDLVDMKTLGIWEPLTVKLQVY--KTA-VE-----TAILLLRIDDIVSGSKKKKD 121
N T D + P+ VK+ VY ++ E + LL + I GSKK
Sbjct: 34 FNARTKDYKGL-------PVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEKGSKKPNK 86
Query: 122 E 122
E
Sbjct: 87 E 87
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 26.1 bits (57), Expect = 6.7
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 65 ETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
+ ++G + +TG+ ++ + GI +P V + A A LL+ + +V+ KK
Sbjct: 474 QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKK 528
>gnl|CDD|183737 PRK12773, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 646
Score = 26.2 bits (57), Expect = 8.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 9 GSKKKKDENQNQAAQPTEEQYPASLVILEG 38
GS++++ E + + P + PA++V+L G
Sbjct: 304 GSERRRREEREKGNVPKSPELPAAVVLLAG 333
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.126 0.333
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,678,908
Number of extensions: 582568
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 62
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 54 (24.5 bits)