RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2834
(137 letters)
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_B* 1e0r_B
Length = 543
Score = 90.7 bits (226), Expect = 2e-22
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
G T+GIN TG++ DM G+ EP+ V Q ++A E AI++LRIDD+++
Sbjct: 470 KGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSS 529
Query: 123 NQNQAAQPTEES 134
N ++ +E S
Sbjct: 530 NPPKSGSSSESS 541
Score = 42.9 bits (102), Expect = 8e-06
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K M+E+++TQD VGDG TT
Sbjct: 76 AAKMMVEVSKTQDSFVGDGTTT 97
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone,
NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Length = 553
Score = 89.5 bits (223), Expect = 4e-22
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
+ +GI+ G VDM G+ EP VK+ K A E A L+LRIDD+VS KK E
Sbjct: 480 ENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKKSGGE 539
Query: 123 NQNQ--AAQPTEE 133
++ A +P+EE
Sbjct: 540 SKTPGGANKPSEE 552
Score = 42.5 bits (101), Expect = 9e-06
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K +++IA+ QDEE DG T
Sbjct: 85 AAKLLVQIAKGQDEETADGTKT 106
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g*
Length = 550
Score = 89.1 bits (222), Expect = 5e-22
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
GE +G+ ET ++ D +WEP VK+ +A E L+L +D+ ++ +
Sbjct: 474 KGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESAN 533
Query: 123 NQNQAAQPTEESM 135
Q
Sbjct: 534 AGMMPPQGAGRGR 546
Score = 42.9 bits (102), Expect = 8e-06
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K++++I+R QD EVGDG T+
Sbjct: 79 AAKTLVDISRAQDAEVGDGTTS 100
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II
chaperonin, binding, chaperone; HET: ANP; 2.24A
{Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A*
3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A*
3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Length = 543
Score = 89.2 bits (222), Expect = 6e-22
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
+G G+N TG + DM G+ EPL VK Q ++A E+ +LLRIDD+++ K +
Sbjct: 466 NGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLRGAP 525
Query: 123 NQNQAAQP 130
+
Sbjct: 526 DMGDMGGM 533
Score = 42.9 bits (102), Expect = 8e-06
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K +IE+A+TQ++EVGDG TT
Sbjct: 74 AAKMLIEVAKTQEKEVGDGTTT 95
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b*
Length = 527
Score = 88.3 bits (220), Expect = 1e-21
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
+G +T G++ G + DM+ LGI E +K V +A E A +LLR+D+I+ + +
Sbjct: 465 NGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANR 524
Query: 123 NQ 124
Sbjct: 525 QH 526
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++ I++ QD+EVGDG T+
Sbjct: 73 AAKVLVNISKVQDDEVGDGTTS 94
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR
folding, ATPase, chaperonin; 2.60A {Thermoplasma
acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1a6e_A*
Length = 545
Score = 88.4 bits (220), Expect = 1e-21
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
G + G++ + + DMK G+ +PL VK ++AVE A ++LRIDD+++ K
Sbjct: 469 KGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKSTPPS 528
Query: 123 NQNQAAQP 130
Q Q
Sbjct: 529 GQGGQGQG 536
Score = 42.9 bits (102), Expect = 8e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
T K ++E+++ QD VGDG TT
Sbjct: 77 TAKMIVEVSKAQDTAVGDGTTT 98
>3aq1_B Thermosome subunit; group II chaperonin, protein folding,
chaperone; 2.75A {Methanococcoides burtonii}
Length = 500
Score = 88.0 bits (219), Expect = 2e-21
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
G G+N TG++VDM + EPL +K Q A+E +++LRIDD+V+
Sbjct: 423 KGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASKGSANQG 482
Query: 123 -NQNQAAQPTEESMR 136
+ M
Sbjct: 483 MGPGGLPDMPDLDMD 497
Score = 42.9 bits (102), Expect = 8e-06
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++E+++TQD EVGDG TT
Sbjct: 28 AAKMIVEVSKTQDAEVGDGTTT 49
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 87.6 bits (218), Expect = 2e-21
Identities = 26/73 (35%), Positives = 35/73 (47%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKDE 122
+ GI+ G DM GI EPL VK Q K+A E AI++LRIDD+++ K +
Sbjct: 472 NRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATKPEG 531
Query: 123 NQNQAAQPTEESM 135
Q M
Sbjct: 532 GQGGGMPGGMGGM 544
Score = 42.9 bits (102), Expect = 9e-06
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K M+E+A+TQD+E GDG TT
Sbjct: 78 AAKMMVEVAKTQDKEAGDGTTT 99
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 84.5 bits (210), Expect = 2e-20
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
G +G++ T D+ D +WEP V++ A E A L++ +D+ + +
Sbjct: 461 QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515
Score = 42.9 bits (102), Expect = 8e-06
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K++++IA++QD EVGDG T+
Sbjct: 66 AAKTLVDIAKSQDAEVGDGTTS 87
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 84.2 bits (209), Expect = 3e-20
Identities = 16/68 (23%), Positives = 34/68 (50%)
Query: 56 TQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSG 115
++ +G++ G +VD G+ EP K++ K+A+E + +LRID +++
Sbjct: 488 KPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITV 547
Query: 116 SKKKKDEN 123
+ E+
Sbjct: 548 DPEPPKED 555
Score = 43.0 bits (102), Expect = 9e-06
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
GK ++E+A+ QD E+GDG T+
Sbjct: 79 AGKILVELAQQQDREIGDGTTS 100
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Length = 513
Score = 83.3 bits (207), Expect = 6e-20
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
+G+TT G++ + G + DM LGI E VK QV +A E A ++LR+D+I+ + +
Sbjct: 458 EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAPR 513
Score = 42.1 bits (100), Expect = 1e-05
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K +++++R QD+EVGDG T+
Sbjct: 67 AAKVLVDMSRVQDDEVGDGTTS 88
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f*
Length = 546
Score = 83.0 bits (206), Expect = 9e-20
Identities = 16/69 (23%), Positives = 24/69 (34%)
Query: 54 ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
D + D G++ GD D GIW+ V A A LL D+++
Sbjct: 475 DELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELL 534
Query: 114 SGSKKKKDE 122
+ E
Sbjct: 535 RAGRSTLKE 543
Score = 42.2 bits (100), Expect = 1e-05
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
T + A QDE GDG TT
Sbjct: 72 TAVLIARAAAAQDEITGDGTTT 93
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e*
Length = 562
Score = 82.2 bits (204), Expect = 1e-19
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKK 119
+ G++ DMK L + +P K Q A + ++L+ID+++ K +
Sbjct: 506 KISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGKDE 561
Score = 42.6 bits (101), Expect = 1e-05
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K +++++++QD+E+GDG T
Sbjct: 100 IAKLLVQLSKSQDDEIGDGTTG 121
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 81.7 bits (202), Expect = 2e-19
Identities = 34/74 (45%), Positives = 47/74 (63%)
Query: 47 GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
G I + + G T GI+G+ G +VDM + GIWEP +K Q KTA+E+A LL
Sbjct: 517 GGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLL 576
Query: 107 LRIDDIVSGSKKKK 120
LR+DDIVSG +K++
Sbjct: 577 LRVDDIVSGVRKQE 590
Score = 43.5 bits (103), Expect = 4e-06
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
KSM+E++RTQDEEVGDG TT
Sbjct: 74 AAKSMLELSRTQDEEVGDGTTT 95
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d*
Length = 528
Score = 81.4 bits (202), Expect = 3e-19
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
+GE GI+ + I +P+ V A E +LRIDDI
Sbjct: 475 NGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAF 526
Score = 42.5 bits (101), Expect = 1e-05
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
+ ++E++ QD E GDG T+
Sbjct: 74 VARMLVEVSAAQDSEAGDGTTS 95
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 81.0 bits (201), Expect = 4e-19
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
GE T GIN G + ++ + +PL V + A ET +L+IDD+V+
Sbjct: 465 QGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVN 516
Score = 42.9 bits (102), Expect = 9e-06
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
+ ++E+++ QD E GDG T+
Sbjct: 66 AARMLVELSKAQDIEAGDGTTS 87
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 515
Score = 79.5 bits (197), Expect = 1e-18
Identities = 43/54 (79%), Positives = 46/54 (85%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSK 117
T+G+NGETG LVDMK LGIWEPL VKLQ YKTAVETA+LLLRIDDIVSG K
Sbjct: 462 NCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHK 515
Score = 43.3 bits (103), Expect = 7e-06
Identities = 17/22 (77%), Positives = 19/22 (86%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
KSMIEI+RTQDEEVGDG T+
Sbjct: 64 AAKSMIEISRTQDEEVGDGTTS 85
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 79.1 bits (196), Expect = 2e-18
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 54 ARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIV 113
Q G++ G D K G++EP VK++ K A E AI +LRIDD++
Sbjct: 466 NEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLI 525
Query: 114 S 114
Sbjct: 526 K 526
Score = 42.9 bits (102), Expect = 8e-06
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K + E+A QD+EVGDG T+
Sbjct: 65 AAKVLCELADLQDKEVGDGTTS 86
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit
arrangement, acetylation, ATP-binding, chaperone,
cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Length = 515
Score = 78.3 bits (194), Expect = 4e-18
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
GI+ DMK + E L K Q A + ++L+IDDI
Sbjct: 463 VNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRK 513
Score = 42.5 bits (101), Expect = 1e-05
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K M+E++++QD+E+GDG T
Sbjct: 65 IAKLMVELSKSQDDEIGDGTTG 86
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 517
Score = 77.2 bits (191), Expect = 9e-18
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 63 DGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
+ G++ TG+ + GIW+ VK Q+ + A +L +D+I+
Sbjct: 464 ESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMR 515
Score = 42.1 bits (100), Expect = 1e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
T + ++A QD+ GDG T+
Sbjct: 65 TASLIAKVATAQDDITGDGTTS 86
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h*
Length = 568
Score = 73.4 bits (181), Expect = 2e-16
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 54 ARTQDEEVGDGETTFGIN---GETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRID 110
T+ V G++ + D++ I++ L K A E A +L ID
Sbjct: 483 NVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSID 542
Query: 111 DIVSGSKKKKDENQNQAAQP 130
I+ K
Sbjct: 543 QIIMAKKAGGPRAPQGPRPG 562
Score = 40.6 bits (96), Expect = 5e-05
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++ Q ++GDG
Sbjct: 81 AVKVLVMATEQQKIDMGDGTNL 102
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 72.2 bits (178), Expect = 5e-16
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 63 DGETTFGIN--GETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
+G G++ E + DM G+ + K K A A+ +LR+D I+
Sbjct: 457 EGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM 510
Score = 40.6 bits (96), Expect = 5e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 46 TGKSMIEIARTQDEEVGDGETT 67
K ++ + Q++EVGDG
Sbjct: 66 AAKMIVMASHMQEQEVGDGTNF 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.089
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 10 SKKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVG---DGET 66
S+ + QA E PA V+++G G +GK+ + + +V D +
Sbjct: 132 SRLQPYLKLRQALL---ELRPAKNVLIDGV--LG--SGKTWVALDVCLSYKVQCKMDFKI 184
Query: 67 ---TFGINGETGDLVDM 80
+++M
Sbjct: 185 FWLNLKNCNSPETVLEM 201
Score = 27.5 bits (60), Expect = 1.9
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 26 EEQYPASLVILEG---KTAAGKYTGKSMIEIARTQDEEVGD-----GETTFGINGETGDL 77
+ Y L++L A + I + T+ ++V D T ++ + L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 78 VDMKTLGI---WEPLTVKLQ 94
+ + + L + Q
Sbjct: 299 TPDEVKSLLLKY--LDCRPQ 316
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 29.4 bits (67), Expect = 0.32
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
V G+ +G N T + +M +GI +P V + A A L++ + +V +
Sbjct: 466 NTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMV--TDL 523
Query: 119 KKDENQNQAAQPTEESM 135
K++ + A M
Sbjct: 524 PKNDAADLGAAGGMGGM 540
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 29.4 bits (67), Expect = 0.32
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 59 EEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKK 118
E+V + G+N +TG D+ G+ +P+ V + A A L L + +V + K
Sbjct: 464 EKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVV--ADK 521
Query: 119 KKDENQNQAAQPTEESM 135
+ E + M
Sbjct: 522 PEKEKASVPGGGDMGGM 538
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 1.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 2 ELDDIVSGSKKKKDENQNQAAQPTEEQY 29
ELD + SK + E + +A + EE
Sbjct: 100 ELD---AASKVMEQEWREKAKKDLEEWN 124
Score = 24.7 bits (53), Expect = 9.5
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 108 RIDDIVSGSKKKKDENQNQAAQPTEESMRE 137
R+ ++ + SK + E + +A + EE +
Sbjct: 97 RLQELDAASKVMEQEWREKAKKDLEEWNQR 126
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 27.9 bits (63), Expect = 1.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 62 GDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKKD 121
+G N TG+ VDM GI +P V + A L+L + +V+ +KK+
Sbjct: 471 ETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKE 530
Query: 122 E 122
Sbjct: 531 S 531
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske,
thermosynechococcus elongatu photosynthesis, electron
transport; 2.00A {Thermosynechococcus elongatus}
Length = 133
Score = 27.1 bits (60), Expect = 1.5
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 36 LEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGINGE 73
+EG+ A G + GD GI G+
Sbjct: 3 IEGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGD 40
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 25.2 bits (56), Expect = 8.4
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 64 GETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVSGSKKKK 120
+ FG N +T + DM G+ +P V + A A LL+ + +++ + K
Sbjct: 473 SDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEPK 529
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.126 0.333
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,961,766
Number of extensions: 111583
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 59
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (23.9 bits)