RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2834
         (137 letters)



>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, beta chain [TaxId:
           2303]}
          Length = 243

 Score = 71.7 bits (175), Expect = 9e-17
 Identities = 27/68 (39%), Positives = 40/68 (58%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   I+I      E   G  T+GIN  TG++ DM   G+ EP+ V  Q  ++A E AI++
Sbjct: 176 GLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMI 235

Query: 107 LRIDDIVS 114
           LRIDD+++
Sbjct: 236 LRIDDVIA 243


>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
           {Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
           2303]}
          Length = 245

 Score = 67.5 bits (164), Expect = 3e-15
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   I        +   G  + G++ +   + DMK  G+ +PL VK    ++AVE A ++
Sbjct: 179 GIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMI 238

Query: 107 LRIDDIV 113
           LRIDD++
Sbjct: 239 LRIDDVI 245


>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain
           {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId:
           79679]}
          Length = 258

 Score = 61.3 bits (148), Expect = 6e-13
 Identities = 26/68 (38%), Positives = 36/68 (52%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G   +E+      E  +     GI+   G   DM   GI EPL VK Q  K+A E AI++
Sbjct: 188 GLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMI 247

Query: 107 LRIDDIVS 114
           LRIDD+++
Sbjct: 248 LRIDDVIA 255


>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus
           thermophilus [TaxId: 274]}
          Length = 255

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 47  GKSMIEIARTQDEEVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILL 106
           G     I +    E  +     G N  TG+ VDM   GI +P  V     + A     L+
Sbjct: 187 GYEGSVIVQQILAETKNPRY--GFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALI 244

Query: 107 LRIDDIVS 114
           L  + +V+
Sbjct: 245 LTTEAVVA 252


>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain
           {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 180

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 60  EVGDGETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLL 107
           +V +     G+N +TG   D+   G+ +P+ V     + A   A L L
Sbjct: 130 KVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFL 177



 Score = 26.7 bits (58), Expect = 0.89
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 48 KSMIEIARTQDEEVGDGETT 67
          + + E+A+  D+  GDG TT
Sbjct: 9  ELVKEVAKKTDDVAGDGTTT 28


>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
           denitrificans [TaxId: 266]}
          Length = 252

 Score = 30.9 bits (69), Expect = 0.038
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 65  ETTFGINGETGDLVDMKTLGIWEPLTVKLQVYKTAVETAILLLRIDDIVS 114
           +  FG N +T +  DM   G+ +P  V     + A   A LL+  + +++
Sbjct: 200 DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIA 249


>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
           [TaxId: 562]}
          Length = 346

 Score = 25.5 bits (54), Expect = 3.0
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 11  KKKKDENQNQAAQPTEEQYPASLVILEGKTAAGKYTGKSMIEIARTQDEEVGDGETTFGI 70
              K + ++ +       Y A   +       G     ++++  +        G   +  
Sbjct: 263 DALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGANTVIGPLNW-- 320

Query: 71  NGETGDLVDMKTLGIWE 87
             E GDL      G+++
Sbjct: 321 -DEKGDLKG-FDFGVFQ 335


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 25.2 bits (54), Expect = 3.6
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 29  YPASLVILEG--KTAAGKYTGKSMIEIARTQDEEVGDGET 66
            P  +++++   KT +GK   + + +I   + +++GD  T
Sbjct: 585 APKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVST 624


>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 24.6 bits (53), Expect = 4.9
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 29  YPASLVILEG--KTAAGKYTGKSMIEIARTQDEEVGDGET 66
            P  L   +   KT +GK   + + +IA      +GD  T
Sbjct: 588 TPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTST 627


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.126    0.333 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,855
Number of extensions: 18659
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 11
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 48 (22.9 bits)