BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2835
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224
++ ++YTSGT G S MLSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH------ 207
Query: 225 DIYSVMTVAATLWFADKNALKGSLI-------NTLLEV--RPHVFLAVPRVWEKIHEKLM 275
+ + + FA +GS+I + +L++ R V + VP + ++ +
Sbjct: 208 -THGLFVASNVTLFA-----RGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQSPR 261
Query: 276 AVGKQTTGVKRWIANYAKSTSLQH 299
+ T ++ +I+ A + H
Sbjct: 262 LTXETTGHMRLFISGSAPLLADTH 285
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224
++ ++YTSGT G S MLSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH------ 207
Query: 225 DIYSVMTVAATLWFADKNALKGSLI-------NTLLEV--RPHVFLAVPRVWEKIHEKLM 275
+ + + FA +GS+I + +L++ R V + VP + ++ +
Sbjct: 208 -THGLFVASNVTLFA-----RGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQSPR 261
Query: 276 AVGKQTTGVKRWIANYAKSTSLQH 299
+ T ++ +I+ A + H
Sbjct: 262 LTXETTGHMRLFISGSAPLLADTH 285
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 22/144 (15%)
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224
++ ++YTSGT G S MLSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH------ 207
Query: 225 DIYSVMTVAATLWFADKNALKGSLI-------NTLLEV--RPHVFLAVPRVWEKIHEKLM 275
+ + + FA +GS+I + +L++ R V + VP + ++ +
Sbjct: 208 -THGLFVASNVTLFA-----RGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQSPR 261
Query: 276 AVGKQTTGVKRWIANYAKSTSLQH 299
+ T ++ +I+ A + H
Sbjct: 262 LTXETTGHMRLFISGSAPLLADTH 285
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
++ ++YTSGT G SK LSHDN+ N+ ++ Y++ + +I LP+ H
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDV-LIHALPIYH 207
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 59 NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ 118
N E+F + ++ G A + +H L S I V K L+K++ V+
Sbjct: 86 NCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI-VFSSKKGLDKVITVQKT 144
Query: 119 CPKLKAIVQYEGKPDKPGVISWDELMELGRAAP---DESLDRVLETIATNECCTLVYTSG 175
+K IV + K D G D ++ R P S + +E + ++ +SG
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIK--RNTPPGFQASSFKTVEVDRKEQVALIMNSSG 202
Query: 176 TEGASKPVMLSHDNIT--FNAACIIQYFKLESAALSVISFLPLSH 218
+ G K V L+H+NI F+ A Y S +V++ +P H
Sbjct: 203 STGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 59 NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ 118
N E+F + ++ G A + +H L S I V K L+K++ V+
Sbjct: 86 NCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI-VFSSKKGLDKVITVQKT 144
Query: 119 CPKLKAIVQYEGKPDKPGVISWDELMELGRAAP---DESLDRVLETIATNECCTLVYTSG 175
+K IV + K D G D ++ R P S + +E + ++ +SG
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIK--RNTPPGFQASSFKTVEVDRKEQVALIMNSSG 202
Query: 176 TEGASKPVMLSHDNIT--FNAACIIQYFKLESAALSVISFLPLSH 218
+ G K V L+H+NI F+ A Y S +V++ +P H
Sbjct: 203 STGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 59 NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ 118
N E+F + ++ G A + +H L S I V K L+K++ V+
Sbjct: 86 NCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI-VFSSKKGLDKVITVQKT 144
Query: 119 CPKLKAIVQYEGKPDKPGVISWDELMELGRAAP---DESLDRVLETIATNECCTLVYTSG 175
+K IV + K D G D ++ R P S + +E + ++ +SG
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIK--RNTPPGYQASSFKTVEVDRKEQVALIMNSSG 202
Query: 176 TEGASKPVMLSHDNIT--FNAACIIQYFKLESAALSVISFLPLSH 218
+ G K V L+H+NI F+ A Y S +V++ +P H
Sbjct: 203 STGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 31/223 (13%)
Query: 59 NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI-----CVVEDDKQLEKIL 113
++PE+ + LGA + G ++P S A + C E K +
Sbjct: 83 SSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES 142
Query: 114 KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYT 173
VK C + PD G + + EL + A + +V I+ ++ L Y+
Sbjct: 143 DVKVMC--------VDSAPD--GCLHFSELTQ----ADENEAPQV--DISPDDVVALPYS 186
Query: 174 SGTEGASKPVMLSHDNITFNAACIIQ------YFKLESAALSVISFLPLSHIAAQTVDIY 227
SGT G K VML+H + + A + YF E L V LP+ HI A +
Sbjct: 187 SGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCV---LPMFHIYALNSIML 243
Query: 228 SVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270
+ V A + K + GSL+ + + + + VP V I
Sbjct: 244 CGLRVGAPILIMPKFEI-GSLLGLIEKYKVSIAPVVPPVMMSI 285
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 103/243 (42%), Gaps = 25/243 (10%)
Query: 53 VCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTN---SPEACLHCLVTSDANICVVEDDKQ 108
V +GFN + L A +A G A ++T N SP+ + L ++ + + D
Sbjct: 75 VATLGFN----HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLF-DPNL 129
Query: 109 LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 168
L + ++ + ++ V + K + G ++++E + E D V + C
Sbjct: 130 LPLVEAIRGELKTVQHFVVMDEKAPE-GYLAYEEAL-------GEEADPV--RVPERAAC 179
Query: 169 TLVYTSGTEGASKPVMLSHDNITFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVDI 226
+ YT+GT G K V+ SH + + AA ++ L + V+ +P+ H+ A +
Sbjct: 180 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDV-VLPVVPMFHVNAWCLP- 237
Query: 227 YSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLA-VPRVWEKIHEKLMAVGKQTTGVK 285
Y+ V A SL+ L + F A VP VW + + L + G + ++
Sbjct: 238 YAATLVGAKQVLPGPRLDPASLVE-LFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 296
Query: 286 RWI 288
R +
Sbjct: 297 RLV 299
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 19/204 (9%)
Query: 59 NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ 118
N PE+ S L A + G A +P S+ + + E + ++KI ++
Sbjct: 122 NCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEA-RYVDKIKPLQND 180
Query: 119 -CPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 177
+ I E P G + + EL + A E +D V I+ ++ L Y+SGT
Sbjct: 181 DGVVIVCIDDNESVPIPEGCLRFTELTQSTTEA-SEVIDSV--EISPDDVVALPYSSGTT 237
Query: 178 GASKPVMLSHDNITFNAACIIQ------YFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231
G K VML+H + + A + YF + L V LP+ HI A + +
Sbjct: 238 GLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCV---LPMFHIYALNSIMLCGLR 294
Query: 232 VAATLWFADKNALKGSLINTLLEV 255
V A + K IN LLE+
Sbjct: 295 VGAAILIMPKFE-----INLLLEL 313
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 51 HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS--PEACLHCLVTSDANICVVEDDKQ 108
H + + N+ ++F GA++ G G+ TN E L+ ++ V +
Sbjct: 110 HHIAVCSENSLQFFMPVCGALFIG---VGVAPTNDIYNERELYNSLSISQPTIVFCSKRA 166
Query: 109 LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECC 168
L+KIL V+ + P ++ IV + + D G S +E A D + ++
Sbjct: 167 LQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETAT 226
Query: 169 TLVY-TSGTEGASKPVMLSHDNI 190
L+ +SG+ G K V L+H NI
Sbjct: 227 ALIMNSSGSTGLPKGVELTHKNI 249
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVEDD 106
+R V ++ PEW+ LG I AG F G S + L+ L S A +V D
Sbjct: 97 QRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD-ILYRLQMSKAK-AIVAGD 154
Query: 107 KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNE 166
+ ++++ V ++CP L+ + K S D + + + S + E
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK-------SCDGWLNFKKLLNEASTTHHCVETGSQE 207
Query: 167 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 208
+ +TSGT G K S+ ++ A + L+++ +
Sbjct: 208 ASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVEDD 106
+R V ++ PEW+ LG I AG F G S + L+ L S A +V D
Sbjct: 97 QRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD-ILYRLQMSKAK-AIVAGD 154
Query: 107 KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNE 166
+ ++++ V ++CP L+ + K S D + + + S + E
Sbjct: 155 EVIQEVDTVASECPSLRIKLLVSEK-------SCDGWLNFKKLLNEASTTHHCVETGSQE 207
Query: 167 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 208
+ +TSGT G K S+ ++ A + L+++ +
Sbjct: 208 ASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 119 CPKLKAIVQYEGKPDKPGVIS-W---DELMELGRAAPDESLDRVLETIATNECCTLVYTS 174
P I + D PG ++ W D L E R+A + D ++ ++YTS
Sbjct: 109 APSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSA---AADEPAVECGGDDNLFIMYTS 165
Query: 175 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230
GT G K V+ +H+++ A+ + ++ LP+ H+AA T I+S M
Sbjct: 166 GTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLP-LPMFHVAALTTVIFSAM 220
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 221
+ +E ++YTSG+ G K V ++++ + ++ F L++ + ++ P S
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQV-FLNQAPFS-FDL 198
Query: 222 QTVDIYSVMTVAATLWFADKNAL 244
+DIY + TLW DK+ +
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMI 221
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 221
+ +E ++YTSG+ G K V ++++ + ++ F L++ + ++ P S
Sbjct: 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQV-FLNQAPFS-FDL 198
Query: 222 QTVDIYSVMTVAATLWFADKNAL 244
+DIY + TLW DK+ +
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMI 221
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA- 220
I N+ ++YTSGT G K + +H NI + Y +FL +S+ A
Sbjct: 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQ-GLVKHVDYMAFSDQD----TFLSVSNYAF 658
Query: 221 -AQTVDIYSVMTVAATLWFADKNALKGS--LINTLLEVRPHVFLAV 263
A T D Y+ M AA L AD++ L + L + +L+ +V A
Sbjct: 659 DAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFAT 704
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 119 CPKLKAIVQYEGKPDKPGVIS-W---DELMELGRAAPDESLDRVLETIATNECCTLVYTS 174
P I + D PG ++ W D L E R+A + D ++ ++YTS
Sbjct: 123 APSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSA---AADEPAVECGGDDNLFIMYTS 179
Query: 175 GTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230
GT G K V+ +H+++ A+ + ++ LP+ H+AA T I+S M
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLP-LPMFHVAALTTVIFSAM 234
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
+I +N+ L YTSG+ K V +SH N+ N I F + + S+LP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETI-IFSWLPPHH 219
>pdb|2C84|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188 With Cmp
pdb|2IY8|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188 With
Cmp- 3fneuac And Lactose
pdb|2IY7|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188 With
Cmp- 3fneuac
Length = 389
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD 133
GG A+ +Y + E H + TS+ + ED P +K + + G D
Sbjct: 327 GGVASSLYFSLPKEKISHIIFTSNKQVKSKED----------ALNNPYVK-VXRRLGIID 375
Query: 134 KPGVISWDELMELG 147
+ VI WD L ELG
Sbjct: 376 ESQVIFWDSLKELG 389
>pdb|2C83|A Chain A, Crystal Structure Of The Sialyltransferase Pm0188
Length = 391
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD 133
GG A+ +Y + E H + TS+ + ED P +K + + G D
Sbjct: 327 GGVASSLYFSLPKEKISHIIFTSNKQVKSKED----------ALNNPYVK-VXRRLGIID 375
Query: 134 KPGVISWDELMELG 147
+ VI WD L ELG
Sbjct: 376 ESQVIFWDSLKELG 389
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGA 32
+AF +L + H V I G++ PEW YS +GA
Sbjct: 248 RAFTRLNVRVPHDVVIGGYDDPEW-YSFVGA 277
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 161 TIATNECCTLVYTSGTEGASKPVMLSHDNI 190
++ ++ +++TSGT G K V +SHDN+
Sbjct: 141 SVKGDDNYYIIFTSGTTGQPKGVQISHDNL 170
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 105 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE--LMELGRAAPDESLDRVLETI 162
+D+++ ++L++ CPK Q+ P+K +I W + + E P L R LE I
Sbjct: 151 EDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEII 210
Query: 163 ATNECC 168
++
Sbjct: 211 LEDDLV 216
>pdb|1A87|A Chain A, Colicin N
Length = 321
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 209 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLL 253
+V+SFLP+S +A + + +MT++ F D N + S IN ++
Sbjct: 274 AVLSFLPISGLAVTALGVIGIMTISYLSSFIDANRV--SNINNII 316
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 105 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE--LMELGRAAPDESLDRVLETI 162
+D+++ ++L++ CPK Q+ P+K +I W + + E P L R LE I
Sbjct: 157 EDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEII 216
Query: 163 ATNECC 168
++
Sbjct: 217 LEDDLV 222
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 28/149 (18%)
Query: 68 LGAIYA---GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKVKA 117
+GA+++ GGF SPEA C++ S + + + D+ L+K +
Sbjct: 155 IGAVHSVIFGGF--------SPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDAL 206
Query: 118 QCPKLKAIVQYEGKPDKPGVISWDELMEL------GRAAPDESLDRVLETIATNECCTLV 171
+ P + ++ I W E +L +A+P+ E + + ++
Sbjct: 207 KNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQ----PEAMNAEDPLFIL 262
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQY 200
YTSG+ G K V+ + AA +Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKY 291
>pdb|3IJ5|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|C Chain C, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
pdb|3IJ5|D Chain D, 1.95 Angstrom Resolution Crystal Structure Of
3-Deoxy-D-Manno- Octulosonate 8-Phosphate Phosphatase
From Yersinia Pestis
Length = 211
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 69 GAIYAGGFAAGMYTTNSPEA-CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQ 127
G IY G + N + + CL+TSD ++ ++ + K+L+ +A + +
Sbjct: 63 GLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRR--AKLLEDRANTLGITHL-- 118
Query: 128 YEGKPDKPGVISWDELMELGRAAPDE 153
Y+G+ DK ++++ EL+ + P++
Sbjct: 119 YQGQSDK--LVAYHELLATLQCQPEQ 142
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 62 EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 121
E+ + LGA+ AG A P + VT + + V+ D + + A
Sbjct: 94 EYVVAFLGALQAGRIAV-------PLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDV 146
Query: 122 LKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASK 181
++ + + G+ P +I D L++L AP+ + E +T L YTSG+
Sbjct: 147 VQHVARRPGE-SPPSIIEVD-LLDLD--APNGYTFKEDEYPST---AYLQYTSGSTRTPA 199
Query: 182 PVMLSHDNITFNAACIIQYFKLESAAL-----SVISFLPLSH 218
V++SH N+ N ++ + ++ + +++S+LP H
Sbjct: 200 GVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,671,315
Number of Sequences: 62578
Number of extensions: 330617
Number of successful extensions: 764
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 35
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)