Query psy2835
Match_columns 305
No_of_seqs 146 out of 2099
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 18:06:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1177|consensus 100.0 1.6E-45 3.4E-50 309.3 25.6 288 3-292 54-360 (596)
2 PTZ00342 acyl-CoA synthetase; 100.0 2.5E-39 5.4E-44 302.7 33.6 290 3-298 65-435 (746)
3 PLN02736 long-chain acyl-CoA s 100.0 3.2E-39 7E-44 301.9 33.3 281 3-294 48-346 (651)
4 COG0318 CaiC Acyl-CoA syntheta 100.0 4.9E-40 1.1E-44 300.1 26.2 281 3-292 15-301 (534)
5 COG1022 FAA1 Long-chain acyl-C 100.0 1.8E-39 4E-44 291.3 29.2 289 4-297 21-320 (613)
6 PLN02861 long-chain-fatty-acid 100.0 9E-39 1.9E-43 298.7 34.0 283 3-297 47-353 (660)
7 PLN02614 long-chain acyl-CoA s 100.0 1.4E-38 3.1E-43 297.3 34.1 281 3-294 49-353 (666)
8 PRK07788 acyl-CoA synthetase; 100.0 1.7E-39 3.7E-44 298.7 26.5 288 3-303 53-355 (549)
9 COG0365 Acs Acyl-coenzyme A sy 100.0 4.9E-39 1.1E-43 284.8 25.1 268 5-290 15-298 (528)
10 KOG1176|consensus 100.0 3E-39 6.4E-44 287.6 20.3 256 22-290 43-307 (537)
11 PRK07529 AMP-binding domain pr 100.0 2.3E-38 5E-43 295.0 26.6 293 3-303 29-365 (632)
12 PLN02430 long-chain-fatty-acid 100.0 2.5E-37 5.5E-42 288.6 33.2 286 3-298 46-354 (660)
13 KOG1256|consensus 100.0 6.4E-38 1.4E-42 278.3 27.6 287 3-297 79-389 (691)
14 PLN02860 o-succinylbenzoate-Co 100.0 2.2E-38 4.7E-43 292.0 25.4 295 3-303 11-321 (563)
15 PLN02387 long-chain-fatty-acid 100.0 2.5E-37 5.4E-42 290.3 32.5 283 3-294 62-385 (696)
16 PRK13295 cyclohexanecarboxylat 100.0 9.1E-38 2E-42 287.0 26.4 294 3-303 28-344 (547)
17 PRK08180 feruloyl-CoA synthase 100.0 1.5E-37 3.3E-42 288.9 27.6 281 3-290 43-342 (614)
18 PRK06334 long chain fatty acid 100.0 1.1E-37 2.3E-42 285.7 25.8 279 3-290 23-307 (539)
19 PLN03052 acetate--CoA ligase; 100.0 1.1E-37 2.4E-42 292.9 24.9 283 2-291 178-480 (728)
20 TIGR02316 propion_prpE propion 100.0 9.4E-38 2E-42 291.0 24.1 281 3-290 56-362 (628)
21 PRK07656 long-chain-fatty-acid 100.0 3.8E-37 8.3E-42 280.9 27.3 278 3-290 9-289 (513)
22 PRK08314 long-chain-fatty-acid 100.0 4.9E-37 1.1E-41 282.3 27.7 289 3-303 14-337 (546)
23 PLN02654 acetate-CoA ligase 100.0 2.1E-37 4.6E-42 289.8 25.2 279 3-289 92-404 (666)
24 PRK04319 acetyl-CoA synthetase 100.0 1.6E-37 3.5E-42 286.7 23.7 290 3-303 47-355 (570)
25 PLN03102 acyl-activating enzym 100.0 3.8E-37 8.2E-42 284.4 25.3 296 2-303 17-331 (579)
26 PRK08279 long-chain-acyl-CoA s 100.0 1.1E-36 2.4E-41 282.7 28.4 278 3-286 41-318 (600)
27 TIGR02188 Ac_CoA_lig_AcsA acet 100.0 3E-37 6.6E-42 287.7 24.5 280 2-289 60-365 (625)
28 PRK06087 short chain acyl-CoA 100.0 8.2E-37 1.8E-41 280.8 26.9 292 3-303 27-333 (547)
29 PRK13382 acyl-CoA synthetase; 100.0 8.8E-37 1.9E-41 279.8 26.3 285 3-303 47-344 (537)
30 PRK06187 long-chain-fatty-acid 100.0 2E-36 4.4E-41 276.5 28.3 290 3-303 10-313 (521)
31 PF00501 AMP-binding: AMP-bind 100.0 1.6E-36 3.5E-41 269.9 26.4 271 5-289 1-284 (417)
32 PTZ00216 acyl-CoA synthetase; 100.0 9.6E-36 2.1E-40 280.1 32.9 283 3-296 73-401 (700)
33 PTZ00297 pantothenate kinase; 100.0 1E-35 2.2E-40 289.7 33.2 281 3-299 431-732 (1452)
34 PRK00174 acetyl-CoA synthetase 100.0 1.2E-36 2.5E-41 284.3 25.6 279 3-289 71-374 (637)
35 PRK12582 acyl-CoA synthetase; 100.0 2.3E-36 4.9E-41 281.5 27.0 281 3-290 53-354 (624)
36 PRK08315 AMP-binding domain pr 100.0 3E-36 6.5E-41 277.8 27.6 285 3-290 20-323 (559)
37 PRK06155 crotonobetaine/carnit 100.0 6.4E-36 1.4E-40 274.3 29.5 291 3-303 25-324 (542)
38 TIGR03208 cyc_hxne_CoA_lg cycl 100.0 2.9E-36 6.3E-41 276.6 26.8 294 3-303 26-342 (538)
39 PRK06839 acyl-CoA synthetase; 100.0 2.6E-36 5.6E-41 274.4 25.7 266 3-290 6-272 (496)
40 KOG1179|consensus 100.0 9.8E-37 2.1E-41 261.4 21.4 268 3-277 81-352 (649)
41 PRK07008 long-chain-fatty-acid 100.0 2.6E-36 5.7E-41 276.9 25.9 292 2-303 13-325 (539)
42 PTZ00237 acetyl-CoA synthetase 100.0 1E-36 2.3E-41 284.2 23.5 285 2-290 62-388 (647)
43 PRK05605 long-chain-fatty-acid 100.0 4.6E-36 1E-40 277.3 27.5 295 3-303 36-368 (573)
44 TIGR02262 benz_CoA_lig benzoat 100.0 6E-36 1.3E-40 272.8 27.7 291 2-303 7-310 (508)
45 TIGR02275 DHB_AMP_lig 2,3-dihy 100.0 2.6E-36 5.7E-41 276.2 25.2 289 3-303 27-331 (527)
46 PRK06164 acyl-CoA synthetase; 100.0 3.3E-36 7.1E-41 276.5 25.6 294 3-303 14-326 (540)
47 TIGR03098 ligase_PEP_1 acyl-Co 100.0 5.5E-36 1.2E-40 273.5 26.5 274 3-289 4-281 (515)
48 PRK05620 long-chain-fatty-acid 100.0 5.3E-36 1.1E-40 276.9 26.6 292 2-303 13-330 (576)
49 PRK08316 acyl-CoA synthetase; 100.0 6.8E-36 1.5E-40 273.3 26.5 277 3-290 15-294 (523)
50 PRK12583 acyl-CoA synthetase; 100.0 1E-35 2.2E-40 274.3 26.7 285 3-290 22-325 (558)
51 PRK08043 bifunctional acyl-[ac 100.0 1.9E-36 4E-41 286.1 21.9 287 3-303 208-511 (718)
52 PRK08008 caiC putative crotono 100.0 1.7E-35 3.6E-40 270.4 27.3 292 3-303 11-319 (517)
53 COG1021 EntE Peptide arylation 100.0 4.8E-37 1E-41 253.1 15.1 281 2-293 31-316 (542)
54 PLN02246 4-coumarate--CoA liga 100.0 1.1E-35 2.4E-40 272.7 25.8 274 3-290 27-306 (537)
55 PRK10524 prpE propionyl-CoA sy 100.0 5.1E-36 1.1E-40 279.7 23.9 282 2-290 56-363 (629)
56 PRK05677 long-chain-fatty-acid 100.0 2.4E-35 5.2E-40 271.8 27.3 293 3-303 28-358 (562)
57 PRK07470 acyl-CoA synthetase; 100.0 2.4E-35 5.2E-40 270.0 27.1 288 3-303 11-312 (528)
58 PRK06188 acyl-CoA synthetase; 100.0 3.7E-35 8E-40 268.6 27.2 274 3-290 16-289 (524)
59 PRK09274 peptide synthase; Pro 100.0 2.9E-35 6.3E-40 270.8 26.2 270 3-290 10-296 (552)
60 PLN02574 4-coumarate--CoA liga 100.0 1.4E-35 3E-40 273.2 23.3 266 10-290 50-327 (560)
61 PRK03640 O-succinylbenzoic aci 100.0 2.5E-35 5.3E-40 267.1 24.6 270 3-303 6-285 (483)
62 TIGR01217 ac_ac_CoA_syn acetoa 100.0 3.6E-35 7.7E-40 274.3 25.8 259 23-290 113-392 (652)
63 PRK03584 acetoacetyl-CoA synth 100.0 2.1E-35 4.6E-40 276.6 24.2 271 11-290 96-391 (655)
64 PRK13388 acyl-CoA synthetase; 100.0 6.1E-35 1.3E-39 267.8 26.7 272 12-303 14-295 (540)
65 PRK06018 putative acyl-CoA syn 100.0 3.1E-35 6.7E-40 270.0 24.7 291 3-303 14-325 (542)
66 PRK05857 acyl-CoA synthetase; 100.0 8.4E-36 1.8E-40 273.5 19.5 284 3-303 18-317 (540)
67 PRK07867 acyl-CoA synthetase; 100.0 8.2E-35 1.8E-39 266.2 25.6 279 3-303 9-297 (529)
68 PRK05852 acyl-CoA synthetase; 100.0 5.2E-35 1.1E-39 268.1 23.9 291 3-303 20-327 (534)
69 PRK08633 2-acyl-glycerophospho 100.0 7E-35 1.5E-39 289.1 26.0 296 3-303 619-930 (1146)
70 PLN02479 acetate-CoA ligase 100.0 2E-34 4.4E-39 265.9 26.6 291 3-303 24-341 (567)
71 PRK07514 malonyl-CoA synthase; 100.0 2.3E-34 5E-39 262.1 25.9 270 3-290 7-277 (504)
72 TIGR03205 pimA dicarboxylate-- 100.0 5.9E-34 1.3E-38 261.5 28.3 290 3-303 25-344 (541)
73 PRK07786 long-chain-fatty-acid 100.0 1.1E-33 2.3E-38 259.9 29.6 263 3-275 21-284 (542)
74 PRK07798 acyl-CoA synthetase; 100.0 5.2E-34 1.1E-38 261.5 27.1 275 3-289 7-303 (533)
75 PRK10946 entE enterobactin syn 100.0 1.9E-34 4.1E-39 264.4 23.9 286 3-303 29-332 (536)
76 PRK06060 acyl-CoA synthetase; 100.0 1.2E-34 2.6E-39 273.6 23.2 258 3-290 8-268 (705)
77 PRK08751 putative long-chain f 100.0 3.7E-34 8E-39 264.0 25.9 280 3-290 29-337 (560)
78 PRK06178 acyl-CoA synthetase; 100.0 1.6E-33 3.5E-38 260.0 29.4 276 3-286 37-329 (567)
79 PRK08162 acyl-CoA synthetase; 100.0 7E-34 1.5E-38 261.3 26.5 291 2-303 21-327 (545)
80 PRK06814 acylglycerophosphoeth 100.0 3.6E-34 7.9E-39 283.5 25.7 289 4-303 636-939 (1140)
81 PRK06145 acyl-CoA synthetase; 100.0 5.4E-34 1.2E-38 259.3 24.1 267 3-290 6-272 (497)
82 PRK12492 long-chain-fatty-acid 100.0 8.3E-34 1.8E-38 261.6 25.4 292 3-303 28-365 (562)
83 PRK10252 entF enterobactin syn 100.0 2E-34 4.3E-39 288.7 22.4 273 3-303 462-749 (1296)
84 PRK07059 Long-chain-fatty-acid 100.0 1.8E-33 4E-38 259.1 26.9 293 3-303 27-359 (557)
85 PLN02330 4-coumarate--CoA liga 100.0 4E-33 8.7E-38 256.3 28.1 266 3-283 32-302 (546)
86 PRK09088 acyl-CoA synthetase; 100.0 4.7E-34 1E-38 259.1 21.0 255 6-290 2-260 (488)
87 KOG1180|consensus 100.0 6.6E-33 1.4E-37 237.2 26.5 292 2-301 63-379 (678)
88 PRK06710 long-chain-fatty-acid 100.0 3.1E-33 6.8E-38 257.9 26.4 278 3-290 28-331 (563)
89 PRK07638 acyl-CoA synthetase; 100.0 6.4E-33 1.4E-37 251.6 27.7 244 3-273 5-248 (487)
90 TIGR01734 D-ala-DACP-lig D-ala 100.0 1.4E-33 3E-38 256.9 22.8 261 3-290 4-266 (502)
91 PRK07769 long-chain-fatty-acid 100.0 2.5E-33 5.5E-38 261.6 23.6 265 3-290 25-314 (631)
92 PRK12476 putative fatty-acid-- 100.0 3E-33 6.5E-38 260.1 23.5 264 3-290 38-325 (612)
93 PRK13383 acyl-CoA synthetase; 100.0 3.8E-33 8.1E-38 254.8 22.9 271 3-303 39-324 (516)
94 TIGR03443 alpha_am_amid L-amin 100.0 2.1E-33 4.6E-38 282.6 22.9 279 3-290 240-537 (1389)
95 PRK12467 peptide synthase; Pro 100.0 2.5E-33 5.5E-38 299.8 23.9 260 3-290 3099-3359(3956)
96 PRK13391 acyl-CoA synthetase; 100.0 1.4E-32 3.1E-37 250.7 25.6 271 6-290 4-283 (511)
97 PRK08974 long-chain-fatty-acid 100.0 2.1E-32 4.6E-37 252.2 26.1 293 3-303 27-357 (560)
98 PRK12467 peptide synthase; Pro 100.0 4.3E-33 9.3E-38 298.1 24.3 263 3-290 1578-1842(3956)
99 PRK05691 peptide synthase; Val 100.0 3.5E-33 7.5E-38 300.9 23.4 264 3-290 3724-3991(4334)
100 PRK04813 D-alanine--poly(phosp 100.0 1.4E-32 3.1E-37 250.3 23.7 261 3-290 6-268 (503)
101 PRK07868 acyl-CoA synthetase; 100.0 3.1E-32 6.7E-37 263.9 26.6 268 3-287 451-725 (994)
102 PRK12316 peptide synthase; Pro 100.0 6.5E-33 1.4E-37 300.9 24.3 262 3-290 4555-4817(5163)
103 PRK09192 acyl-CoA synthetase; 100.0 1.7E-32 3.7E-37 253.7 23.3 267 2-290 24-307 (579)
104 PRK12316 peptide synthase; Pro 100.0 1.1E-32 2.3E-37 299.2 24.2 262 3-290 515-778 (5163)
105 PRK05851 long-chain-fatty-acid 100.0 1.6E-32 3.4E-37 251.1 20.9 259 3-290 6-280 (525)
106 PRK09029 O-succinylbenzoic aci 100.0 2E-32 4.3E-37 246.5 21.1 253 5-303 9-271 (458)
107 PRK05850 acyl-CoA synthetase; 100.0 2.3E-32 5E-37 252.9 21.3 266 2-290 4-296 (578)
108 PRK08276 long-chain-fatty-acid 100.0 1.2E-31 2.5E-36 244.2 24.5 272 16-303 3-294 (502)
109 PRK07787 acyl-CoA synthetase; 100.0 3.1E-32 6.7E-37 246.1 19.7 252 10-303 11-273 (471)
110 PRK13390 acyl-CoA synthetase; 100.0 1.4E-31 3.1E-36 243.6 23.8 264 7-290 5-278 (501)
111 PRK08308 acyl-CoA synthetase; 100.0 2.8E-31 6.1E-36 236.0 23.5 207 18-274 2-208 (414)
112 PRK07768 long-chain-fatty-acid 100.0 2.6E-31 5.6E-36 244.3 23.4 262 3-290 6-284 (545)
113 PRK05691 peptide synthase; Val 100.0 1.3E-31 2.9E-36 288.8 24.3 264 3-290 2192-2456(4334)
114 PRK12406 long-chain-fatty-acid 100.0 6.5E-31 1.4E-35 239.7 22.3 257 17-290 4-279 (509)
115 TIGR01733 AA-adenyl-dom amino 100.0 4.2E-31 9.2E-36 234.4 19.0 238 26-289 1-241 (408)
116 PRK07445 O-succinylbenzoic aci 100.0 1E-30 2.3E-35 234.3 21.6 232 24-303 19-261 (452)
117 TIGR01923 menE O-succinylbenzo 100.0 4.4E-31 9.5E-36 236.3 17.3 240 26-303 1-250 (436)
118 TIGR03089 conserved hypothetic 100.0 6.6E-29 1.4E-33 201.4 21.0 212 4-258 1-227 (227)
119 PLN03051 acyl-activating enzym 100.0 3.1E-29 6.8E-34 227.9 16.7 231 57-290 1-244 (499)
120 KOG1175|consensus 100.0 1.3E-27 2.8E-32 213.1 18.3 255 24-289 96-366 (626)
121 COG1020 EntF Non-ribosomal pep 99.9 6.7E-23 1.4E-27 192.1 25.3 242 3-273 231-474 (642)
122 KOG3628|consensus 99.8 1.5E-18 3.3E-23 159.3 19.5 264 3-278 774-1058(1363)
123 TIGR02372 4_coum_CoA_lig 4-cou 99.7 7.8E-17 1.7E-21 141.0 13.7 115 164-286 94-210 (386)
124 PRK07824 O-succinylbenzoic aci 99.6 7.2E-16 1.6E-20 134.6 9.4 137 162-303 32-182 (358)
125 TIGR02155 PA_CoA_ligase phenyl 99.5 5E-14 1.1E-18 125.7 8.5 139 163-303 73-227 (422)
126 KOG1178|consensus 99.5 3.2E-13 6.9E-18 127.5 12.6 248 4-274 41-306 (1032)
127 TIGR03335 F390_ftsA coenzyme F 99.4 1.2E-12 2.5E-17 117.4 9.2 137 163-303 84-236 (445)
128 KOG3628|consensus 98.9 8.2E-09 1.8E-13 96.5 8.3 243 23-289 123-405 (1363)
129 COG1541 PaaK Coenzyme F390 syn 98.6 1.3E-07 2.9E-12 82.1 8.2 125 163-290 88-218 (438)
130 TIGR02304 aden_form_hyp probab 97.5 0.00045 9.7E-09 61.5 8.7 126 168-303 102-244 (430)
131 COG1541 PaaK Coenzyme F390 syn 96.9 0.013 2.8E-07 51.7 10.7 92 24-117 109-202 (438)
132 PF04443 LuxE: Acyl-protein sy 95.0 0.61 1.3E-05 40.8 12.2 114 163-277 87-213 (365)
133 TIGR03335 F390_ftsA coenzyme F 93.5 1.9 4.1E-05 39.0 12.6 80 24-107 105-186 (445)
134 TIGR02155 PA_CoA_ligase phenyl 92.6 2.6 5.7E-05 37.7 12.1 81 25-107 95-177 (422)
135 PF00501 AMP-binding: AMP-bind 89.9 4.3 9.3E-05 36.0 10.7 91 161-262 6-99 (417)
136 COG0031 CysK Cysteine synthase 89.4 7.1 0.00015 33.0 10.6 91 30-121 41-137 (300)
137 PRK09274 peptide synthase; Pro 86.9 13 0.00027 34.6 12.0 99 163-264 19-121 (552)
138 PLN02736 long-chain acyl-CoA s 86.1 21 0.00046 34.0 13.3 106 162-272 56-166 (651)
139 PRK06187 long-chain-fatty-acid 86.1 13 0.00028 34.0 11.6 85 185-272 32-119 (521)
140 PLN03102 acyl-activating enzym 85.8 13 0.00029 34.8 11.6 97 162-270 26-125 (579)
141 PLN02565 cysteine synthase 85.4 21 0.00045 30.8 11.7 72 34-105 49-121 (322)
142 PLN03052 acetate--CoA ligase; 84.7 18 0.00039 35.1 12.2 100 163-266 188-290 (728)
143 TIGR03089 conserved hypothetic 84.6 7.1 0.00015 31.7 8.1 54 43-98 171-226 (227)
144 PRK06839 acyl-CoA synthetase; 84.3 23 0.0005 32.2 12.3 98 162-271 14-115 (496)
145 KOG1176|consensus 84.2 18 0.00039 33.6 11.2 90 182-274 43-137 (537)
146 PRK05857 acyl-CoA synthetase; 84.0 13 0.00029 34.4 10.7 95 162-266 26-123 (540)
147 PRK08316 acyl-CoA synthetase; 84.0 20 0.00044 32.8 11.9 98 163-272 24-124 (523)
148 PRK07656 long-chain-fatty-acid 84.0 20 0.00043 32.7 11.8 96 163-270 18-116 (513)
149 PTZ00237 acetyl-CoA synthetase 83.5 20 0.00044 34.2 11.8 95 164-264 75-172 (647)
150 TIGR03590 PseG pseudaminic aci 83.0 24 0.00052 29.6 10.9 81 18-106 5-89 (279)
151 PRK07788 acyl-CoA synthetase; 83.0 14 0.00029 34.4 10.3 97 162-270 61-160 (549)
152 PRK08008 caiC putative crotono 82.7 23 0.0005 32.5 11.7 102 162-270 19-123 (517)
153 TIGR02188 Ac_CoA_lig_AcsA acet 82.4 23 0.00051 33.5 11.8 97 163-265 70-169 (625)
154 PRK00174 acetyl-CoA synthetase 82.4 23 0.00051 33.6 11.8 97 163-265 80-179 (637)
155 PRK05677 long-chain-fatty-acid 81.8 23 0.00051 33.0 11.4 95 163-269 37-135 (562)
156 PRK13295 cyclohexanecarboxylat 81.6 22 0.00048 32.9 11.2 97 163-265 37-136 (547)
157 PF03321 GH3: GH3 auxin-respon 81.5 0.7 1.5E-05 42.7 1.2 31 162-192 77-108 (528)
158 PRK13383 acyl-CoA synthetase; 81.0 18 0.0004 33.2 10.3 97 163-271 48-147 (516)
159 PLN02654 acetate-CoA ligase 80.9 30 0.00066 33.1 12.0 98 163-266 102-202 (666)
160 PLN03013 cysteine synthase 80.7 31 0.00067 31.0 11.0 73 34-106 157-230 (429)
161 PRK08279 long-chain-acyl-CoA s 80.6 31 0.00067 32.4 11.9 98 162-271 49-149 (600)
162 PRK13391 acyl-CoA synthetase; 80.5 40 0.00087 30.9 12.4 100 162-271 9-111 (511)
163 PRK08276 long-chain-fatty-acid 80.4 21 0.00046 32.6 10.5 85 183-270 10-97 (502)
164 PRK06334 long chain fatty acid 80.4 16 0.00035 33.9 9.8 85 184-271 45-129 (539)
165 PRK07798 acyl-CoA synthetase; 80.4 39 0.00084 31.0 12.3 97 163-271 16-115 (533)
166 PRK03584 acetoacetyl-CoA synth 80.1 33 0.00072 32.7 12.0 96 163-265 97-195 (655)
167 TIGR03098 ligase_PEP_1 acyl-Co 79.7 18 0.0004 33.0 9.9 84 184-270 25-111 (515)
168 PRK10696 tRNA 2-thiocytidine b 79.1 30 0.00065 28.7 10.1 80 25-104 3-94 (258)
169 PRK11761 cysM cysteine synthas 79.0 21 0.00045 30.3 9.2 70 35-105 47-117 (296)
170 PRK08315 AMP-binding domain pr 78.9 27 0.00058 32.4 10.8 93 163-265 29-124 (559)
171 PRK08314 long-chain-fatty-acid 78.9 21 0.00045 33.0 10.0 98 163-272 23-124 (546)
172 PLN02330 4-coumarate--CoA liga 78.6 24 0.00052 32.7 10.4 98 163-270 41-141 (546)
173 PRK07514 malonyl-CoA synthase; 78.3 26 0.00057 31.9 10.4 87 182-271 26-115 (504)
174 PRK06155 crotonobetaine/carnit 78.1 27 0.00059 32.4 10.5 97 163-271 34-133 (542)
175 PLN02246 4-coumarate--CoA liga 78.0 25 0.00054 32.5 10.3 98 163-270 36-136 (537)
176 PRK08162 acyl-CoA synthetase; 78.0 22 0.00047 32.9 9.9 98 162-271 30-130 (545)
177 PLN02614 long-chain acyl-CoA s 78.0 67 0.0015 30.8 13.4 105 162-271 57-166 (666)
178 PRK07059 Long-chain-fatty-acid 77.9 40 0.00087 31.3 11.6 95 163-269 36-133 (557)
179 PLN02556 cysteine synthase/L-3 77.6 47 0.001 29.3 11.2 71 35-105 94-165 (368)
180 PRK04319 acetyl-CoA synthetase 77.5 36 0.00078 31.8 11.2 100 163-270 57-159 (570)
181 PRK09088 acyl-CoA synthetase; 77.3 39 0.00085 30.7 11.2 93 163-265 8-103 (488)
182 TIGR01217 ac_ac_CoA_syn acetoa 77.1 45 0.00098 31.9 11.9 95 164-265 98-195 (652)
183 TIGR01733 AA-adenyl-dom amino 77.1 20 0.00043 31.6 9.0 67 201-270 20-86 (408)
184 TIGR02316 propion_prpE propion 77.1 50 0.0011 31.3 12.2 96 163-264 65-163 (628)
185 PRK07529 AMP-binding domain pr 77.0 42 0.00091 31.9 11.6 97 162-263 37-136 (632)
186 PRK05605 long-chain-fatty-acid 76.9 26 0.00057 32.6 10.2 96 163-270 45-143 (573)
187 COG0318 CaiC Acyl-CoA syntheta 76.6 51 0.0011 30.6 11.8 94 162-265 23-119 (534)
188 PRK07470 acyl-CoA synthetase; 76.3 46 0.00099 30.6 11.5 96 163-270 20-118 (528)
189 PRK06087 short chain acyl-CoA 76.2 33 0.00071 31.8 10.6 91 162-263 35-128 (547)
190 PRK08751 putative long-chain f 76.1 29 0.00063 32.2 10.2 96 163-270 38-137 (560)
191 PRK06164 acyl-CoA synthetase; 76.0 32 0.00068 31.8 10.4 92 162-265 22-116 (540)
192 TIGR03443 alpha_am_amid L-amin 75.8 31 0.00067 36.3 11.2 101 161-264 247-350 (1389)
193 PLN02479 acetate-CoA ligase 75.7 61 0.0013 30.2 12.2 97 162-270 32-131 (567)
194 PRK12492 long-chain-fatty-acid 75.5 34 0.00075 31.8 10.5 95 163-269 37-135 (562)
195 KOG1252|consensus 75.5 18 0.00039 31.1 7.5 79 44-122 96-182 (362)
196 PLN02861 long-chain-fatty-acid 75.4 41 0.0009 32.2 11.1 106 162-272 55-165 (660)
197 PRK05620 long-chain-fatty-acid 75.4 72 0.0016 29.8 12.7 102 162-272 22-127 (576)
198 PRK12583 acyl-CoA synthetase; 75.2 44 0.00095 31.0 11.1 93 163-265 31-126 (558)
199 TIGR02262 benz_CoA_lig benzoat 75.2 63 0.0014 29.5 12.0 96 163-270 18-116 (508)
200 PRK13388 acyl-CoA synthetase; 74.9 61 0.0013 30.0 12.0 97 163-270 14-113 (540)
201 PLN02247 indole-3-acetic acid- 74.8 3.6 7.7E-05 38.5 3.6 30 164-193 88-118 (606)
202 KOG1250|consensus 74.7 28 0.00061 30.7 8.6 79 35-118 101-179 (457)
203 PLN02249 indole-3-acetic acid- 74.5 2.3 5E-05 39.9 2.4 29 163-191 98-127 (597)
204 PRK10524 prpE propionyl-CoA sy 73.7 62 0.0013 30.7 11.8 96 163-264 66-164 (629)
205 PRK03640 O-succinylbenzoic aci 73.5 71 0.0015 28.9 12.0 96 162-269 14-112 (483)
206 PRK12406 long-chain-fatty-acid 72.8 38 0.00083 31.0 10.0 85 184-271 11-98 (509)
207 PRK13390 acyl-CoA synthetase; 72.6 75 0.0016 29.0 11.9 94 163-266 10-106 (501)
208 PLN02387 long-chain-fatty-acid 72.1 48 0.001 32.1 10.7 88 183-273 105-195 (696)
209 TIGR01139 cysK cysteine syntha 71.2 63 0.0014 27.4 10.7 71 35-106 41-112 (298)
210 KOG1177|consensus 71.0 31 0.00066 31.4 8.2 85 181-268 74-161 (596)
211 TIGR01136 cysKM cysteine synth 71.0 47 0.001 28.2 9.4 71 35-106 42-113 (299)
212 TIGR02379 ECA_wecE TDP-4-keto- 70.5 28 0.00061 30.7 8.1 57 44-104 65-126 (376)
213 PRK13382 acyl-CoA synthetase; 70.3 59 0.0013 30.1 10.7 97 162-270 55-154 (537)
214 PRK06178 acyl-CoA synthetase; 70.1 48 0.001 30.8 10.2 97 163-271 46-145 (567)
215 PLN02574 4-coumarate--CoA liga 70.1 72 0.0016 29.7 11.3 98 163-270 52-153 (560)
216 PF01041 DegT_DnrJ_EryC1: DegT 70.0 18 0.00039 31.7 6.9 60 41-104 56-120 (363)
217 TIGR03208 cyc_hxne_CoA_lg cycl 70.0 73 0.0016 29.4 11.3 97 163-265 35-134 (538)
218 PRK11706 TDP-4-oxo-6-deoxy-D-g 69.5 33 0.00072 30.2 8.4 56 44-103 65-125 (375)
219 PRK05852 acyl-CoA synthetase; 69.3 81 0.0017 29.1 11.4 91 163-263 29-122 (534)
220 PLN02860 o-succinylbenzoate-Co 69.0 37 0.0008 31.7 9.1 79 184-265 32-113 (563)
221 COG0079 HisC Histidinol-phosph 68.7 58 0.0013 28.5 9.6 87 40-131 89-185 (356)
222 TIGR01138 cysM cysteine syntha 68.6 71 0.0015 27.0 9.9 71 34-105 42-113 (290)
223 COG4009 Uncharacterized protei 68.0 23 0.0005 23.1 5.0 66 23-100 8-76 (88)
224 PRK06018 putative acyl-CoA syn 67.4 49 0.0011 30.6 9.5 100 163-270 23-125 (542)
225 PLN00011 cysteine synthase 66.6 68 0.0015 27.6 9.6 72 34-106 51-124 (323)
226 PRK07008 long-chain-fatty-acid 66.4 65 0.0014 29.8 10.1 85 183-270 38-125 (539)
227 PRK05850 acyl-CoA synthetase; 66.4 1.1E+02 0.0025 28.5 12.2 106 162-271 13-124 (578)
228 cd01445 TST_Repeats Thiosulfat 66.1 21 0.00045 26.4 5.5 41 36-76 81-124 (138)
229 PRK07638 acyl-CoA synthetase; 65.7 1.1E+02 0.0023 27.8 11.7 85 24-114 162-247 (487)
230 PRK07867 acyl-CoA synthetase; 65.5 77 0.0017 29.3 10.4 85 183-270 27-115 (529)
231 PRK06188 acyl-CoA synthetase; 65.3 54 0.0012 30.1 9.4 79 24-107 187-265 (524)
232 TIGR00936 ahcY adenosylhomocys 65.2 89 0.0019 28.0 10.1 66 38-103 20-87 (406)
233 PRK06060 acyl-CoA synthetase; 64.5 66 0.0014 31.0 10.1 93 163-268 19-114 (705)
234 PRK08633 2-acyl-glycerophospho 64.5 80 0.0017 32.4 11.1 100 161-271 626-727 (1146)
235 PRK06702 O-acetylhomoserine am 64.2 35 0.00076 30.8 7.5 40 66-105 92-133 (432)
236 PRK08974 long-chain-fatty-acid 63.8 56 0.0012 30.4 9.2 95 163-269 36-134 (560)
237 KOG0023|consensus 63.1 78 0.0017 27.3 8.7 78 41-122 173-250 (360)
238 PRK07786 long-chain-fatty-acid 63.0 75 0.0016 29.4 9.9 96 163-270 30-128 (542)
239 COG1064 AdhP Zn-dependent alco 62.6 34 0.00074 29.7 6.8 60 42-105 159-218 (339)
240 PLN02430 long-chain-fatty-acid 62.3 1.5E+02 0.0033 28.5 14.2 103 163-270 55-162 (660)
241 PLN02356 phosphateglycerate ki 62.2 86 0.0019 28.3 9.4 70 34-104 87-157 (423)
242 TIGR01923 menE O-succinylbenzo 62.1 67 0.0015 28.5 9.2 63 200-265 18-80 (436)
243 TIGR01734 D-ala-DACP-lig D-ala 61.5 69 0.0015 29.1 9.3 81 183-266 24-107 (502)
244 PTZ00216 acyl-CoA synthetase; 61.1 1.5E+02 0.0031 28.8 11.7 89 181-272 118-209 (700)
245 PLN03051 acyl-activating enzym 60.6 1.1E+02 0.0023 28.1 10.3 80 24-107 138-218 (499)
246 PTZ00342 acyl-CoA synthetase; 60.3 1E+02 0.0022 30.2 10.4 105 162-273 73-194 (746)
247 PRK06710 long-chain-fatty-acid 59.8 67 0.0014 29.9 9.0 94 163-268 37-133 (563)
248 COG0399 WecE Predicted pyridox 59.4 65 0.0014 28.5 8.0 72 42-117 66-146 (374)
249 PRK10717 cysteine synthase A; 59.3 83 0.0018 27.2 8.8 70 35-105 48-118 (330)
250 cd06448 L-Ser-dehyd Serine deh 59.3 39 0.00084 29.0 6.7 66 40-106 41-106 (316)
251 PRK05939 hypothetical protein; 59.2 70 0.0015 28.5 8.5 30 72-103 108-137 (397)
252 PRK12582 acyl-CoA synthetase; 59.1 68 0.0015 30.4 9.0 96 163-264 62-165 (624)
253 PRK11658 UDP-4-amino-4-deoxy-L 58.7 56 0.0012 28.8 7.8 56 43-102 66-126 (379)
254 PRK07787 acyl-CoA synthetase; 58.5 78 0.0017 28.6 9.0 89 162-264 12-100 (471)
255 TIGR03588 PseC UDP-4-keto-6-de 57.9 78 0.0017 27.8 8.7 60 41-103 60-127 (380)
256 TIGR01137 cysta_beta cystathio 57.9 1E+02 0.0023 27.9 9.6 71 34-105 45-116 (454)
257 PRK06381 threonine synthase; V 57.7 40 0.00087 28.9 6.6 68 35-106 51-118 (319)
258 PLN02620 indole-3-acetic acid- 57.7 7.1 0.00015 36.6 2.0 30 163-192 99-129 (612)
259 COG1167 ARO8 Transcriptional r 57.0 69 0.0015 29.2 8.2 86 205-301 177-265 (459)
260 PRK08308 acyl-CoA synthetase; 56.9 1.4E+02 0.0031 26.4 11.5 97 24-126 120-218 (414)
261 PRK09192 acyl-CoA synthetase; 56.7 1.5E+02 0.0032 27.7 10.8 87 182-271 47-143 (579)
262 PRK07050 cystathionine beta-ly 56.6 82 0.0018 28.0 8.5 41 65-105 95-137 (394)
263 PRK09029 O-succinylbenzoic aci 56.4 96 0.0021 27.9 9.2 91 162-264 15-108 (458)
264 TIGR02275 DHB_AMP_lig 2,3-dihy 56.2 85 0.0018 28.9 8.9 92 162-265 35-129 (527)
265 PF04122 CW_binding_2: Putativ 56.1 59 0.0013 21.8 7.8 72 28-103 6-78 (92)
266 PRK04813 D-alanine--poly(phosp 55.9 90 0.0019 28.3 9.0 78 184-264 27-107 (503)
267 cd01449 TST_Repeat_2 Thiosulfa 55.8 35 0.00075 24.0 5.1 40 37-76 65-104 (118)
268 cd00640 Trp-synth-beta_II Tryp 55.4 57 0.0012 26.6 6.9 69 37-106 37-105 (244)
269 PRK08180 feruloyl-CoA synthase 53.9 1E+02 0.0023 29.1 9.3 95 163-264 52-154 (614)
270 TIGR03205 pimA dicarboxylate-- 53.9 1.1E+02 0.0024 28.2 9.4 78 184-264 46-126 (541)
271 PRK12476 putative fatty-acid-- 53.1 2E+02 0.0044 27.1 13.5 103 163-270 47-156 (612)
272 PRK07476 eutB threonine dehydr 52.8 1.5E+02 0.0033 25.5 10.9 67 37-106 56-122 (322)
273 COG2236 Predicted phosphoribos 52.6 25 0.00053 27.8 4.0 32 23-55 5-36 (192)
274 KOG1138|consensus 52.2 60 0.0013 29.6 6.6 61 46-106 414-475 (653)
275 PRK15407 lipopolysaccharide bi 52.1 87 0.0019 28.4 8.0 55 46-104 107-166 (438)
276 KOG0350|consensus 51.7 49 0.0011 30.2 6.0 127 163-303 182-315 (620)
277 COG0436 Aspartate/tyrosine/aro 51.4 47 0.001 29.6 6.1 54 47-104 110-170 (393)
278 PRK06382 threonine dehydratase 51.4 1.8E+02 0.0038 26.1 9.8 63 41-106 66-128 (406)
279 PRK14057 epimerase; Provisiona 51.2 1.4E+02 0.0031 24.8 11.3 64 39-105 91-164 (254)
280 cd01519 RHOD_HSP67B2 Member of 51.1 44 0.00096 22.8 4.9 53 24-76 37-92 (106)
281 PRK10252 entF enterobactin syn 51.0 1E+02 0.0022 32.3 9.3 84 184-270 483-569 (1296)
282 PRK04870 histidinol-phosphate 51.0 1.7E+02 0.0036 25.4 9.7 34 70-103 122-159 (356)
283 PRK08574 cystathionine gamma-s 50.9 68 0.0015 28.4 7.0 41 65-105 83-124 (385)
284 PRK08134 O-acetylhomoserine am 50.0 86 0.0019 28.4 7.6 14 92-105 123-136 (433)
285 COG0365 Acs Acyl-coenzyme A sy 49.8 1.8E+02 0.0038 27.2 9.6 100 165-270 25-126 (528)
286 PF08734 GYD: GYD domain; Int 49.7 80 0.0017 21.4 7.5 66 28-94 16-91 (91)
287 PF09269 DUF1967: Domain of un 49.5 18 0.00038 23.2 2.3 20 36-55 43-62 (69)
288 cd00615 Orn_deC_like Ornithine 49.2 1E+02 0.0023 25.9 7.7 55 47-104 96-161 (294)
289 TIGR03595 Obg_CgtA_exten Obg f 49.2 23 0.0005 22.6 2.8 19 38-56 45-63 (69)
290 PRK06145 acyl-CoA synthetase; 48.6 1.5E+02 0.0033 26.9 9.3 80 184-266 27-109 (497)
291 cd01561 CBS_like CBS_like: Thi 47.6 1.7E+02 0.0037 24.6 11.5 69 37-106 39-108 (291)
292 PRK07868 acyl-CoA synthetase; 47.4 3.3E+02 0.0071 27.8 12.0 94 162-270 459-555 (994)
293 PRK11267 biopolymer transport 46.8 95 0.0021 23.0 6.3 27 50-76 99-128 (141)
294 TIGR02080 O_succ_thio_ly O-suc 46.4 1.5E+02 0.0033 26.2 8.5 37 68-104 84-122 (382)
295 PRK09545 znuA high-affinity zi 46.2 1.9E+02 0.0041 24.8 9.0 68 51-120 203-275 (311)
296 COG1167 ARO8 Transcriptional r 46.1 90 0.002 28.5 7.2 57 49-106 178-235 (459)
297 PRK10595 SOS cell division inh 44.7 1.2E+02 0.0025 23.3 6.4 16 88-103 97-112 (164)
298 cd01562 Thr-dehyd Threonine de 44.6 1.1E+02 0.0024 25.9 7.2 52 55-106 69-120 (304)
299 PF01297 TroA: Periplasmic sol 44.6 1.8E+02 0.0038 23.9 8.5 99 28-131 128-231 (256)
300 PRK14012 cysteine desulfurase; 44.1 2.2E+02 0.0047 25.2 9.3 57 47-104 91-151 (404)
301 PRK11493 sseA 3-mercaptopyruva 43.6 54 0.0012 27.6 5.1 53 24-76 201-257 (281)
302 PF05728 UPF0227: Uncharacteri 43.6 1.6E+02 0.0034 23.1 8.4 78 7-93 23-101 (187)
303 PF07994 NAD_binding_5: Myo-in 43.1 2.1E+02 0.0046 24.4 9.2 70 27-99 128-227 (295)
304 cd04863 MtLigD_Pol_like MtLigD 42.5 1.5E+02 0.0034 24.1 7.1 65 11-91 100-165 (231)
305 PRK14807 histidinol-phosphate 42.5 2.2E+02 0.0047 24.7 8.9 55 47-104 97-155 (351)
306 PRK08043 bifunctional acyl-[ac 42.3 1.5E+02 0.0033 28.7 8.6 82 184-268 231-314 (718)
307 PLN02723 3-mercaptopyruvate su 41.9 62 0.0013 27.9 5.2 41 36-76 255-295 (320)
308 PRK07239 bifunctional uroporph 41.6 1.5E+02 0.0032 26.2 7.7 13 165-177 200-212 (381)
309 COG0552 FtsY Signal recognitio 41.4 2.4E+02 0.0052 24.5 8.5 68 35-106 156-230 (340)
310 KOG1179|consensus 41.4 3.1E+02 0.0068 25.9 9.9 77 25-106 262-340 (649)
311 COG1240 ChlD Mg-chelatase subu 41.0 1.1E+02 0.0023 25.4 6.1 59 25-98 92-150 (261)
312 PRK09331 Sep-tRNA:Cys-tRNA syn 40.9 1.9E+02 0.0041 25.5 8.4 55 47-104 99-165 (387)
313 PRK05967 cystathionine beta-ly 40.9 2.4E+02 0.0052 25.2 8.8 80 24-106 55-137 (395)
314 cd01563 Thr-synth_1 Threonine 40.9 1.1E+02 0.0023 26.4 6.6 68 35-106 58-125 (324)
315 PRK06348 aspartate aminotransf 40.6 1.7E+02 0.0038 25.7 8.1 21 178-198 240-260 (384)
316 PRK05638 threonine synthase; V 40.2 1.1E+02 0.0023 27.8 6.7 52 55-106 116-167 (442)
317 PRK06721 threonine synthase; R 40.2 1.3E+02 0.0028 26.3 7.0 65 38-106 66-131 (352)
318 cd04861 LigD_Pol_like LigD_Pol 39.9 1.7E+02 0.0036 23.9 7.0 66 11-92 96-162 (227)
319 KOG0633|consensus 39.9 25 0.00055 29.1 2.4 71 36-106 96-169 (375)
320 PLN02550 threonine dehydratase 39.8 3.4E+02 0.0074 25.8 10.9 62 42-106 151-212 (591)
321 cd06502 TA_like Low-specificit 39.4 64 0.0014 27.6 5.1 20 178-197 199-219 (338)
322 PRK07503 methionine gamma-lyas 38.8 2E+02 0.0044 25.7 8.2 14 182-195 222-235 (403)
323 PF09373 PMBR: Pseudomurein-bi 38.7 63 0.0014 17.1 3.2 27 22-49 2-28 (33)
324 cd02067 B12-binding B12 bindin 38.5 1.4E+02 0.003 21.0 7.1 34 72-105 25-58 (119)
325 PRK05942 aspartate aminotransf 38.4 1.8E+02 0.0038 25.7 7.8 24 175-198 246-269 (394)
326 PF08845 SymE_toxin: Toxin Sym 38.3 44 0.00095 20.5 2.7 22 38-59 29-50 (57)
327 PRK06234 methionine gamma-lyas 38.3 2.5E+02 0.0053 25.1 8.7 38 68-105 97-136 (400)
328 PRK09028 cystathionine beta-ly 38.3 2.7E+02 0.0058 24.9 8.8 51 55-105 80-133 (394)
329 PLN00175 aminotransferase fami 38.2 2.3E+02 0.0049 25.4 8.5 23 176-198 263-285 (413)
330 PRK06814 acylglycerophosphoeth 37.6 2.9E+02 0.0062 28.5 10.1 83 183-268 657-741 (1140)
331 KOG1371|consensus 37.1 2.8E+02 0.0061 24.1 8.7 24 167-190 120-145 (343)
332 COG1111 MPH1 ERCC4-like helica 37.0 3.4E+02 0.0075 25.1 9.2 75 82-178 407-484 (542)
333 cd04865 LigD_Pol_like_2 LigD_P 36.8 1.9E+02 0.0042 23.5 6.9 65 11-91 97-162 (228)
334 TIGR01747 diampropi_NH3ly diam 36.6 3E+02 0.0066 24.4 10.1 56 51-106 94-149 (376)
335 PRK09162 hypoxanthine-guanine 36.5 1.3E+02 0.0028 23.4 5.8 47 22-70 14-60 (181)
336 PRK12414 putative aminotransfe 36.4 2.3E+02 0.0049 24.9 8.2 64 37-103 74-141 (384)
337 PRK09177 xanthine-guanine phos 36.2 1.3E+02 0.0028 22.7 5.7 48 24-74 9-56 (156)
338 cd04862 PaeLigD_Pol_like PaeLi 36.0 2E+02 0.0044 23.4 6.9 64 11-90 96-160 (227)
339 PRK07409 threonine synthase; V 35.8 1.5E+02 0.0032 25.9 6.8 53 54-106 81-134 (353)
340 PRK06450 threonine synthase; V 35.7 1.6E+02 0.0035 25.6 6.9 77 24-107 77-153 (338)
341 PRK07769 long-chain-fatty-acid 35.6 3.9E+02 0.0085 25.3 13.2 103 163-270 34-143 (631)
342 PRK08638 threonine dehydratase 35.5 2.4E+02 0.0051 24.5 7.9 53 54-106 78-130 (333)
343 cd01448 TST_Repeat_1 Thiosulfa 35.5 1.3E+02 0.0029 21.1 5.5 41 36-76 65-106 (122)
344 PF07538 ChW: Clostridial hydr 35.5 24 0.00052 19.2 1.2 11 173-183 16-26 (36)
345 PRK07048 serine/threonine dehy 35.5 2E+02 0.0044 24.6 7.5 52 55-106 76-127 (321)
346 PTZ00433 tyrosine aminotransfe 35.4 2.5E+02 0.0054 25.0 8.3 6 38-43 84-89 (412)
347 TIGR02822 adh_fam_2 zinc-bindi 35.2 1.9E+02 0.0042 24.8 7.3 58 42-103 158-215 (329)
348 PLN02368 alanine transaminase 35.2 2.5E+02 0.0053 25.2 8.1 65 35-103 113-182 (407)
349 PRK07591 threonine synthase; V 35.2 2E+02 0.0044 25.9 7.6 76 24-106 117-192 (421)
350 PRK08329 threonine synthase; V 35.0 1.9E+02 0.0042 25.2 7.3 76 24-106 84-159 (347)
351 PLN02231 alanine transaminase 34.8 2.6E+02 0.0056 26.2 8.4 12 84-95 253-264 (534)
352 PRK09082 methionine aminotrans 34.8 2.5E+02 0.0055 24.7 8.2 17 181-197 245-261 (386)
353 TIGR03201 dearomat_had 6-hydro 34.8 2.1E+02 0.0046 24.6 7.6 59 42-104 159-217 (349)
354 TIGR02778 ligD_pol DNA polymer 34.7 2.5E+02 0.0053 23.2 7.2 64 11-90 112-176 (245)
355 PF08479 POTRA_2: POTRA domain 34.3 75 0.0016 20.4 3.6 28 20-48 26-53 (76)
356 TIGR03531 selenium_SpcS O-phos 34.3 3.1E+02 0.0067 25.0 8.5 44 49-95 150-200 (444)
357 PLN02409 serine--glyoxylate am 34.0 3.4E+02 0.0073 24.1 12.0 36 69-104 79-114 (401)
358 PRK05752 uroporphyrinogen-III 34.0 2E+02 0.0043 23.7 6.9 13 165-177 181-193 (255)
359 TIGR01124 ilvA_2Cterm threonin 34.0 3.9E+02 0.0084 24.8 10.0 52 55-106 69-120 (499)
360 PLN03026 histidinol-phosphate 33.9 3.1E+02 0.0068 24.1 8.6 21 175-195 243-263 (380)
361 cd07050 BMC_EutL_repeat2 ethan 33.7 87 0.0019 20.7 3.6 40 39-78 3-43 (87)
362 PRK06108 aspartate aminotransf 33.7 3.2E+02 0.007 23.8 11.8 23 175-197 235-257 (382)
363 PRK05166 histidinol-phosphate 33.6 3.2E+02 0.007 23.8 10.2 53 47-103 109-165 (371)
364 PRK06290 aspartate aminotransf 33.1 2.6E+02 0.0057 24.9 8.0 67 35-104 87-158 (410)
365 PRK06207 aspartate aminotransf 33.0 2.3E+02 0.005 25.2 7.7 67 36-104 85-154 (405)
366 COG1832 Predicted CoA-binding 33.0 94 0.002 23.0 4.1 38 52-89 18-58 (140)
367 PF14552 Tautomerase_2: Tautom 33.0 87 0.0019 20.8 3.7 38 24-62 39-77 (82)
368 PRK08197 threonine synthase; V 32.9 1.8E+02 0.0039 25.9 6.8 53 54-106 130-182 (394)
369 TIGR01127 ilvA_1Cterm threonin 32.9 3.5E+02 0.0075 23.9 10.3 53 54-106 51-103 (380)
370 PF07722 Peptidase_C26: Peptid 32.6 73 0.0016 25.6 4.0 30 68-97 31-60 (217)
371 PRK13355 bifunctional HTH-doma 32.6 3E+02 0.0066 25.5 8.6 11 175-185 356-366 (517)
372 smart00450 RHOD Rhodanese Homo 32.6 1.4E+02 0.0031 19.4 5.7 39 38-76 44-82 (100)
373 TIGR00260 thrC threonine synth 32.5 1.9E+02 0.0042 24.8 6.9 54 53-106 73-127 (328)
374 PLN02855 Bifunctional selenocy 32.3 3.1E+02 0.0067 24.5 8.4 13 91-103 141-153 (424)
375 PRK02261 methylaspartate mutas 32.2 1.6E+02 0.0035 21.7 5.5 41 65-105 22-62 (137)
376 PRK08045 cystathionine gamma-s 32.2 1.9E+02 0.0042 25.6 6.9 17 69-85 86-102 (386)
377 cd06447 D-Ser-dehyd D-Serine d 32.1 2.7E+02 0.0059 25.0 7.8 54 53-106 136-189 (404)
378 PF13580 SIS_2: SIS domain; PD 31.7 1.5E+02 0.0033 21.7 5.4 44 37-80 90-136 (138)
379 TIGR02539 SepCysS Sep-tRNA:Cys 31.6 2.1E+02 0.0045 25.1 7.0 54 48-104 88-153 (370)
380 PRK08912 hypothetical protein; 31.4 2.3E+02 0.0049 24.9 7.3 17 181-197 241-257 (387)
381 TIGR01324 cysta_beta_ly_B cyst 31.4 3.7E+02 0.008 23.8 8.5 41 65-105 80-122 (377)
382 cd04864 LigD_Pol_like_1 LigD_P 31.2 2.9E+02 0.0063 22.5 7.2 64 11-90 98-161 (228)
383 PRK08248 O-acetylhomoserine am 31.0 3.2E+02 0.0069 24.7 8.2 14 91-104 122-135 (431)
384 PRK11493 sseA 3-mercaptopyruva 31.0 1.5E+02 0.0032 24.9 5.8 50 35-84 72-123 (281)
385 PF00291 PALP: Pyridoxal-phosp 30.8 1.8E+02 0.0039 24.5 6.4 56 50-106 56-111 (306)
386 PRK06352 threonine synthase; V 30.7 2.1E+02 0.0046 25.0 6.8 65 38-106 66-131 (351)
387 PRK09422 ethanol-active dehydr 30.6 2.5E+02 0.0055 23.8 7.4 59 43-104 156-214 (338)
388 PRK08133 O-succinylhomoserine 30.5 3.8E+02 0.0082 23.8 8.5 52 55-106 80-134 (390)
389 PRK13237 tyrosine phenol-lyase 30.4 2.8E+02 0.006 25.4 7.5 51 43-97 110-174 (460)
390 TIGR03392 FeS_syn_CsdA cystein 30.3 3.3E+02 0.0072 23.9 8.3 58 46-104 74-138 (398)
391 PRK07445 O-succinylbenzoic aci 30.3 4.1E+02 0.0089 24.0 9.5 78 184-263 19-99 (452)
392 KOG0733|consensus 30.3 1.2E+02 0.0026 28.8 5.2 90 2-93 272-373 (802)
393 PRK08198 threonine dehydratase 30.3 3.1E+02 0.0067 24.5 8.0 52 55-106 74-125 (404)
394 TIGR02803 ExbD_1 TonB system t 29.7 1.4E+02 0.003 21.4 4.7 27 50-76 85-114 (122)
395 TIGR02035 D_Ser_am_lyase D-ser 29.6 3.4E+02 0.0074 24.6 8.0 55 53-107 154-208 (431)
396 PRK14665 mnmA tRNA-specific 2- 29.6 2.3E+02 0.0051 24.9 6.8 59 47-105 2-68 (360)
397 cd06453 SufS_like Cysteine des 29.6 3.5E+02 0.0076 23.5 8.2 13 182-194 209-221 (373)
398 PRK10287 thiosulfate:cyanide s 29.5 2E+02 0.0043 20.0 6.0 48 24-79 42-89 (104)
399 PLN02238 hypoxanthine phosphor 29.3 1.9E+02 0.0041 22.7 5.7 41 24-65 11-51 (189)
400 smart00728 ChW Clostridial hyd 29.2 33 0.00071 20.0 1.1 11 173-183 17-27 (46)
401 TIGR02304 aden_form_hyp probab 29.2 4.4E+02 0.0095 23.9 10.7 84 45-131 138-223 (430)
402 PRK07324 transaminase; Validat 29.1 2E+02 0.0044 25.2 6.6 21 177-197 227-247 (373)
403 PLN02494 adenosylhomocysteinas 29.1 4.6E+02 0.01 24.2 8.6 82 22-103 18-101 (477)
404 TIGR00639 PurN phosphoribosylg 28.9 2.9E+02 0.0062 21.7 7.3 66 38-106 17-88 (190)
405 PRK05613 O-acetylhomoserine am 28.9 2.8E+02 0.006 25.2 7.4 94 35-130 94-192 (437)
406 PF00156 Pribosyltran: Phospho 28.9 2.1E+02 0.0045 20.1 5.8 26 24-50 4-29 (125)
407 PRK14185 bifunctional 5,10-met 28.9 3.7E+02 0.008 22.9 8.2 66 40-105 22-97 (293)
408 COG1171 IlvA Threonine dehydra 28.8 2.5E+02 0.0055 24.5 6.7 54 52-107 77-130 (347)
409 PRK08246 threonine dehydratase 28.8 3.7E+02 0.008 23.0 8.1 57 49-106 67-123 (310)
410 PRK06939 2-amino-3-ketobutyrat 28.7 1.6E+02 0.0034 25.9 5.8 54 47-104 123-181 (397)
411 PRK08960 hypothetical protein; 28.5 2.6E+02 0.0057 24.5 7.3 24 175-198 237-260 (387)
412 PF00464 SHMT: Serine hydroxym 28.5 4.4E+02 0.0094 23.7 9.9 73 47-119 107-196 (399)
413 PRK02991 D-serine dehydratase; 28.4 3.3E+02 0.0071 24.8 7.7 54 53-106 159-212 (441)
414 PRK12723 flagellar biosynthesi 28.3 2.8E+02 0.0061 24.7 7.1 103 26-132 146-264 (388)
415 PRK15400 lysine decarboxylase 28.1 2.4E+02 0.0051 27.5 7.0 57 47-106 232-307 (714)
416 TIGR00858 bioF 8-amino-7-oxono 28.1 1.9E+02 0.004 24.9 6.2 53 48-104 98-153 (360)
417 PF06745 KaiC: KaiC; InterPro 28.0 1.5E+02 0.0033 23.7 5.2 55 44-98 13-72 (226)
418 PRK08363 alanine aminotransfer 28.0 4.2E+02 0.0092 23.3 8.7 18 175-192 240-259 (398)
419 PRK10874 cysteine sulfinate de 28.0 3.9E+02 0.0084 23.6 8.3 32 73-104 108-141 (401)
420 COG2746 Aminoglycoside N3'-ace 27.9 71 0.0015 26.3 3.1 26 36-61 15-40 (251)
421 cd01019 ZnuA Zinc binding prot 27.8 3.7E+02 0.008 22.6 9.4 69 50-120 178-251 (286)
422 PRK11024 colicin uptake protei 27.8 1.6E+02 0.0034 21.8 4.8 8 25-32 85-92 (141)
423 PLN02723 3-mercaptopyruvate su 27.8 1.6E+02 0.0035 25.3 5.5 49 36-84 89-139 (320)
424 PRK15411 rcsA colanic acid cap 27.7 3.1E+02 0.0067 21.7 7.9 72 55-126 4-82 (207)
425 cd06451 AGAT_like Alanine-glyo 27.6 4E+02 0.0086 22.9 8.8 69 35-104 60-131 (356)
426 PF00667 FAD_binding_1: FAD bi 27.4 66 0.0014 25.8 3.0 29 45-73 40-68 (219)
427 PRK05968 hypothetical protein; 27.4 3.1E+02 0.0068 24.3 7.5 37 69-105 97-135 (389)
428 PRK03317 histidinol-phosphate 26.9 4.2E+02 0.0092 23.0 9.8 21 175-195 231-251 (368)
429 cd04866 LigD_Pol_like_3 LigD_P 26.9 3.5E+02 0.0075 22.0 7.0 65 11-91 91-157 (223)
430 PF01861 DUF43: Protein of unk 26.8 3.6E+02 0.0079 22.2 8.0 49 18-71 18-66 (243)
431 PTZ00377 alanine aminotransfer 26.8 3.6E+02 0.0078 24.7 8.0 19 178-196 306-327 (481)
432 PRK12483 threonine dehydratase 26.7 5.3E+02 0.012 24.1 10.8 53 54-106 88-140 (521)
433 TIGR02326 transamin_PhnW 2-ami 26.7 4.2E+02 0.0091 22.9 11.4 59 46-104 49-108 (363)
434 PRK06260 threonine synthase; V 26.7 2.6E+02 0.0056 24.9 6.8 77 23-106 94-171 (397)
435 cd08239 THR_DH_like L-threonin 26.6 3.4E+02 0.0073 23.2 7.5 60 42-105 156-216 (339)
436 PRK10537 voltage-gated potassi 26.4 1.8E+02 0.0039 26.0 5.7 66 40-106 293-358 (393)
437 PF04014 Antitoxin-MazE: Antid 26.4 1.2E+02 0.0026 17.4 3.2 20 41-60 15-34 (47)
438 PRK08811 uroporphyrinogen-III 26.2 49 0.0011 27.6 2.0 17 49-65 69-85 (266)
439 PLN02242 methionine gamma-lyas 26.2 3.3E+02 0.0071 24.5 7.4 94 35-130 101-200 (418)
440 PRK03321 putative aminotransfe 26.1 4.3E+02 0.0092 22.8 8.4 53 47-103 95-151 (352)
441 PRK10083 putative oxidoreducta 26.0 3.5E+02 0.0076 23.0 7.5 59 44-105 155-214 (339)
442 PTZ00323 NAD+ synthase; Provis 25.9 4.2E+02 0.009 22.6 10.6 89 22-113 21-121 (294)
443 TIGR02801 tolR TolR protein. T 25.8 1.9E+02 0.0041 20.9 4.9 13 20-32 99-111 (129)
444 COG4821 Uncharacterized protei 25.7 1.8E+02 0.004 23.2 4.8 54 31-106 86-140 (243)
445 PRK08091 ribulose-phosphate 3- 25.6 3.7E+02 0.0081 21.9 12.1 65 38-105 83-150 (228)
446 PTZ00297 pantothenate kinase; 25.5 7.7E+02 0.017 26.6 10.6 85 183-272 456-543 (1452)
447 PLN02970 serine racemase 25.3 4.4E+02 0.0096 22.7 9.7 52 55-106 79-130 (328)
448 PF02254 TrkA_N: TrkA-N domain 25.3 1E+02 0.0022 21.5 3.3 62 40-103 53-115 (116)
449 PRK07337 aminotransferase; Val 25.1 4.2E+02 0.0092 23.2 7.9 23 176-198 236-258 (388)
450 cd01137 PsaA Metal binding pro 25.1 3.2E+02 0.007 23.0 6.8 70 50-119 176-248 (287)
451 TIGR03540 DapC_direct LL-diami 25.0 4.1E+02 0.0088 23.2 7.8 17 181-197 246-262 (383)
452 KOG3938|consensus 25.0 1.7E+02 0.0038 24.3 4.8 52 165-217 50-101 (334)
453 TIGR03877 thermo_KaiC_1 KaiC d 25.0 2.9E+02 0.0064 22.4 6.4 54 44-97 15-72 (237)
454 PRK06855 aminotransferase; Val 25.0 2.8E+02 0.0061 24.9 6.8 10 85-94 158-167 (433)
455 TIGR01822 2am3keto_CoA 2-amino 24.9 1.8E+02 0.004 25.5 5.6 54 47-104 119-177 (393)
456 KOG0025|consensus 24.9 4.2E+02 0.0092 22.7 7.0 63 46-108 157-220 (354)
457 PRK13238 tnaA tryptophanase/L- 24.9 2.2E+02 0.0049 26.0 6.2 54 47-104 114-184 (460)
458 COG0796 MurI Glutamate racemas 24.8 4.2E+02 0.0091 22.3 9.0 78 3-85 19-102 (269)
459 PF02670 DXP_reductoisom: 1-de 24.7 2.1E+02 0.0046 20.9 4.8 42 75-116 25-66 (129)
460 PRK13958 N-(5'-phosphoribosyl) 24.7 3.4E+02 0.0075 21.6 6.5 73 51-123 23-101 (207)
461 PLN02607 1-aminocyclopropane-1 24.7 3.9E+02 0.0085 24.3 7.7 21 175-195 282-303 (447)
462 PRK07811 cystathionine gamma-s 24.7 4.2E+02 0.009 23.5 7.7 34 71-104 97-132 (388)
463 PF12646 DUF3783: Domain of un 24.5 1.8E+02 0.0038 17.7 4.4 31 35-66 14-44 (58)
464 COG2062 SixA Phosphohistidine 24.4 3.3E+02 0.0071 20.9 7.0 77 18-97 19-98 (163)
465 PRK09295 bifunctional cysteine 24.4 4.3E+02 0.0093 23.4 7.9 11 93-103 134-144 (406)
466 COG0313 Predicted methyltransf 24.3 1.7E+02 0.0038 24.5 4.8 57 3-60 170-227 (275)
467 TIGR00623 sula cell division i 24.3 2.9E+02 0.0064 21.3 5.7 65 38-103 49-116 (168)
468 PLN02409 serine--glyoxylate am 24.2 5E+02 0.011 23.0 8.2 57 47-104 81-144 (401)
469 cd06454 KBL_like KBL_like; thi 24.2 3.1E+02 0.0067 23.4 6.8 53 48-104 83-139 (349)
470 TIGR03801 asp_4_decarbox aspar 24.2 2.7E+02 0.0059 26.0 6.5 15 175-189 313-327 (521)
471 PRK09275 aspartate aminotransf 24.2 2.7E+02 0.0059 26.0 6.6 55 47-103 187-247 (527)
472 PRK05205 bifunctional pyrimidi 24.1 3.1E+02 0.0067 21.1 6.1 46 24-71 6-53 (176)
473 PTZ00376 aspartate aminotransf 24.1 4.9E+02 0.011 23.0 8.2 31 71-103 121-151 (404)
474 PRK02261 methylaspartate mutas 24.0 3E+02 0.0065 20.3 7.6 47 217-263 15-61 (137)
475 cd01017 AdcA Metal binding pro 24.0 3.2E+02 0.007 22.9 6.6 68 52-119 172-242 (282)
476 KOG3055|consensus 24.0 3.7E+02 0.0079 21.3 9.8 94 35-132 46-144 (263)
477 PRK05476 S-adenosyl-L-homocyst 23.8 5.5E+02 0.012 23.3 9.1 81 22-102 20-102 (425)
478 TIGR03528 2_3_DAP_am_ly diamin 23.7 3.9E+02 0.0085 23.9 7.3 54 53-106 115-168 (396)
479 PRK10946 entE enterobactin syn 23.7 5.8E+02 0.013 23.5 10.7 79 24-107 201-282 (536)
480 PRK08249 cystathionine gamma-s 23.6 5.3E+02 0.011 23.0 8.3 38 68-105 97-136 (398)
481 PRK07683 aminotransferase A; V 23.3 5.1E+02 0.011 22.7 8.2 65 37-104 73-141 (387)
482 TIGR01979 sufS cysteine desulf 23.3 5.2E+02 0.011 22.7 8.4 15 90-104 126-140 (403)
483 PRK12738 kbaY tagatose-bisphos 23.3 4.7E+02 0.01 22.2 7.9 64 15-85 44-108 (286)
484 TIGR03366 HpnZ_proposed putati 23.0 4E+02 0.0087 22.0 7.1 60 41-104 112-172 (280)
485 cd00378 SHMT Serine-glycine hy 23.0 2.1E+02 0.0045 25.3 5.6 19 85-103 149-167 (402)
486 cd08230 glucose_DH Glucose deh 22.8 5E+02 0.011 22.4 7.8 57 46-103 169-225 (355)
487 PRK08361 aspartate aminotransf 22.7 4.9E+02 0.011 22.8 7.9 16 181-196 246-261 (391)
488 PRK08776 cystathionine gamma-s 22.5 5.5E+02 0.012 23.0 8.1 38 68-105 93-132 (405)
489 TIGR03880 KaiC_arch_3 KaiC dom 22.5 3.2E+02 0.0069 21.8 6.1 54 45-98 11-68 (224)
490 PRK15481 transcriptional regul 22.5 4.9E+02 0.011 23.3 7.9 19 177-195 286-304 (431)
491 KOG1553|consensus 22.4 5.4E+02 0.012 22.7 8.8 88 174-276 280-368 (517)
492 PRK15029 arginine decarboxylas 22.4 2.9E+02 0.0063 27.2 6.6 47 47-96 242-302 (755)
493 PRK14119 gpmA phosphoglyceromu 22.3 2.4E+02 0.0051 22.8 5.3 37 25-62 150-186 (228)
494 PF05621 TniB: Bacterial TniB 22.2 2.1E+02 0.0045 24.5 5.0 52 52-106 98-154 (302)
495 PF01276 OKR_DC_1: Orn/Lys/Arg 21.9 1.3E+02 0.0027 27.2 3.8 48 47-97 103-164 (417)
496 PRK08813 threonine dehydratase 21.9 5.5E+02 0.012 22.5 10.4 77 24-106 60-136 (349)
497 COG0279 GmhA Phosphoheptose is 21.7 3.8E+02 0.0083 20.7 7.4 62 23-93 91-154 (176)
498 PRK05958 8-amino-7-oxononanoat 21.6 2.3E+02 0.005 24.6 5.6 54 47-104 120-175 (385)
499 PRK08637 hypothetical protein; 21.6 4.3E+02 0.0093 23.2 7.3 47 48-94 91-140 (388)
500 PRK07768 long-chain-fatty-acid 21.5 6.4E+02 0.014 23.2 8.9 82 182-266 27-118 (545)
No 1
>KOG1177|consensus
Probab=100.00 E-value=1.6e-45 Score=309.34 Aligned_cols=288 Identities=17% Similarity=0.215 Sum_probs=255.6
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|+..+++.||+.+..+ ++.++||+|+.++ ++.+|++|.++|+++||+|+++.||+.+|+.+++||+++|.+.+++
T Consensus 54 q~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~e-v~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~ 132 (596)
T KOG1177|consen 54 QLLETTTERVPDKEAAVFDHEGIRLTFSEFVSE-VESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNL 132 (596)
T ss_pred HHHHHHhhccCcceEEEEeeccchhhHHHHHHH-HHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEecc
Confidence 568888999999555444 6778999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHH----HHHHHh-------------ccCCCccEEEEccCCCCCCCcccHHHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLE----KILKVK-------------AQCPKLKAIVQYEGKPDKPGVISWDEL 143 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~----~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~l 143 (305)
||.+..++++..|++.+.+++|+...+..+ .+.++. +.++.+.+++..+++...++...+.++
T Consensus 133 NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~Ga~~~sev 212 (596)
T KOG1177|consen 133 NPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLPGAFLLSEV 212 (596)
T ss_pred CcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCCCceehHHH
Confidence 999999999999999999999998754322 222222 235788889988867667889999999
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
+..........+........+|+++.|-|||||||.|||+.+||-+++++......+.++ ..++++++..|++|.+|.+
T Consensus 213 ~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~-~e~~~i~~~~Pl~H~~G~~ 291 (596)
T KOG1177|consen 213 LKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGY-NEKHRICIPNPLYHCFGCV 291 (596)
T ss_pred HHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCc-CcceEEEecCchHHHHHHH
Confidence 988776555555555556788999999999999999999999999999999999999999 8888999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHH
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYA 292 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a 292 (305)
.++++++..|+++|++.+..+|.+.+++|+++|||.++.+|++|..|++.+....++++++|..+.+++
T Consensus 292 ~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa 360 (596)
T KOG1177|consen 292 LGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGA 360 (596)
T ss_pred HHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCC
Confidence 999999999999999888777999999999999999999999999999999999999999998887654
No 2
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.5e-39 Score=302.74 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=228.5
Q ss_pred hHHHHHHHhcccceeeecc--C---CccchHHHHHHHHHHHHHHHHHc---CCCCC-----------CeEEEEecCChhH
Q psy2835 3 AFLKLGLERYHSVCIIGFN--A---PEWFYSDLGAIYAGGLAKAFLKL---GLERY-----------HSVCIIGFNAPEW 63 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~---~~~Ty~el~~~~~~~la~~L~~~---g~~~g-----------d~V~i~~~n~~~~ 63 (305)
++|.+.++++|++.++... + +.+||+|+.++ +.++|++|.+. |+++| |+|+|+++|+++|
T Consensus 65 ~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~-v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew 143 (746)
T PTZ00342 65 KLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKK-VLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINW 143 (746)
T ss_pred HHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHH-HHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHH
Confidence 5788888999997777652 2 58999999996 99999999974 99998 9999999999999
Q ss_pred HHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---------
Q psy2835 64 FYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK--------- 134 (305)
Q Consensus 64 ~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------- 134 (305)
+++++||+++|++++|+++.++.+++.++++++++++++++.+ ..+.+.+....++.++.+++++.....
T Consensus 144 ~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 222 (746)
T PTZ00342 144 LVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLD-LVEGLLERKNELPHLKKLIILDTLIKSKEININKEE 222 (746)
T ss_pred HHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHH-HHHHHHHhhccCCCceEEEEECCCCccccccccccc
Confidence 9999999999999999999999999999999999999999766 467777777778888888887652110
Q ss_pred ---------CCc-------------------------------ccHHHHHHhccCC--CCchhHH---------hhhccC
Q psy2835 135 ---------PGV-------------------------------ISWDELMELGRAA--PDESLDR---------VLETIA 163 (305)
Q Consensus 135 ---------~~~-------------------------------~~~~~l~~~~~~~--~~~~~~~---------~~~~~~ 163 (305)
.+. .++.++....... ....+.. ......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (746)
T PTZ00342 223 KNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNED 302 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCCCCCCC
Confidence 000 1122222211100 0000000 011346
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh--ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
++++++|+|||||||.||||++||+|+..++....... .. ...|++++.+|++|++++.. .+.++..|+++++.+.
T Consensus 303 ~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~-~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~~i~~~~~ 380 (746)
T PTZ00342 303 PDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK-YNPKTHLSYLPISHIYERVI-AYLSFMLGGTINIWSK 380 (746)
T ss_pred ccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccC-CCCCeEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC
Confidence 79999999999999999999999999999887654332 12 35689999999999999876 6778999999999875
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhhH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQ 298 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~~ 298 (305)
+ +..+++.|++++||+++++|.++++|.+.......+.+.++..++.+|.+.+..
T Consensus 381 -~-~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 435 (746)
T PTZ00342 381 -D-INYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS 435 (746)
T ss_pred -C-HHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3 689999999999999999999999999877666666778888888888876654
No 3
>PLN02736 long-chain acyl-CoA synthetase
Probab=100.00 E-value=3.2e-39 Score=301.87 Aligned_cols=281 Identities=22% Similarity=0.373 Sum_probs=231.5
Q ss_pred hHHHHHHHhcccceeeec----cC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF----NA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~----~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
++++..++++|+..++.. ++ +.+||+|+.++ ++++|++|.++|+++||+|+++++|+++|+++++||+++
T Consensus 48 ~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~-v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 126 (651)
T PLN02736 48 DNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTA-RTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAY 126 (651)
T ss_pred HHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 578889999999777631 21 35999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---------CCCcccHHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---------KPGVISWDELM 144 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~l~ 144 (305)
|++++|+++.++.+++.+++++++++++|++.+ ..+.+.++...++.++.++.+++... .....+++++.
T Consensus 127 G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (651)
T PLN02736 127 SYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQ-TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLL 205 (651)
T ss_pred CCeEEEeecCCCHHHHHHHHhccCCCEEEECHH-HHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHH
Confidence 999999999999999999999999999999876 35666666666777777776643211 01234677766
Q ss_pred HhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH
Q psy2835 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
......+... ....++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|++|+..
T Consensus 206 ~~~~~~~~~~-----~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~-~~~d~~l~~lPl~h~~~~~~ 279 (651)
T PLN02736 206 AQGRSSPQPF-----RPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKF-YPSDVHISYLPLAHIYERVN 279 (651)
T ss_pred HhcccCCCCC-----CCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCC-CCCCEEEEeCCHHHHHHHHH
Confidence 5432111110 13467999999999999999999999999999999888888888 89999999999999999865
Q ss_pred HHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Q psy2835 225 DIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKS 294 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~ 294 (305)
++.++..|+++++.+.. +..+++.+++++||+++++|.+++.+.+.........+.++..++.++..
T Consensus 280 -~~~~l~~G~~i~~~~~~--~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (651)
T PLN02736 280 -QIVMLHYGVAVGFYQGD--NLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYN 346 (651)
T ss_pred -HHHHHHcCCEEEEeCCC--HHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 78899999999988753 58899999999999999999999999887666555566777777666544
No 4
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.9e-40 Score=300.13 Aligned_cols=281 Identities=22% Similarity=0.267 Sum_probs=228.6
Q ss_pred hHHHHHHHhcccceeeeccCCc--cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPE--WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~--~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++++.+.++|+..++.+.++. +||+||.++ ++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 15 ~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~-~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpl 93 (534)
T COG0318 15 SLLERAARRNPDRPALIFLGRGGRLTYRELDRR-ANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPL 93 (534)
T ss_pred HHHHHHHHhCCCceEEEEcCCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeec
Confidence 6788999999998888887776 999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
||.++..++.+++++.++++++++.+ ..+....+....+....+........... .+++++........... .
T Consensus 94 n~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~ 166 (534)
T COG0318 94 NPRLTPRELAYILNDAGAKVLITSAE-FAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAEGPGPDADA-----R 166 (534)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEccc-chhHHHHHhccCCcceEEEeccccccccc-ccHHHHhhccCCccccc-----C
Confidence 99999999999999999999999987 33455555444433333332222110000 24555533221111110 0
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc--cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
...++++++++|||||||.||||++||+++..+.......++ + +++|++++++|++|.+|+...++.++..|+++++
T Consensus 167 ~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~ 245 (534)
T COG0318 167 PVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGL-TPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVL 245 (534)
T ss_pred CCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccC-CCCceEEEecChHHHHHHHHHHHHHHHcCCEEEe
Confidence 146899999999999999999999999999999988888888 8 9999999999999999999877888999999999
Q ss_pred eCC-ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccCh-HHHHHHHHH
Q psy2835 239 ADK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTG-VKRWIANYA 292 (305)
Q Consensus 239 ~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~s-l~~~~~~~a 292 (305)
.+. ..++..++..+.++++|+++++|+++..+++++.....+.++ ||.++.+++
T Consensus 246 ~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~ 301 (534)
T COG0318 246 LSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGA 301 (534)
T ss_pred CCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCC
Confidence 984 333789999999999999999999999999988777666665 776666533
No 5
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=100.00 E-value=1.8e-39 Score=291.32 Aligned_cols=289 Identities=26% Similarity=0.421 Sum_probs=222.7
Q ss_pred HHHHHHHhcccceeeec----cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 4 FLKLGLERYHSVCIIGF----NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~----~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
.+.+.++.+|+..++.+ ..+.+||+|+.++ +.++|.+|.+.|+.+||+|+|++.|+++|+++.+||+.+|++.||
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~-v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp 99 (613)
T COG1022 21 RLAERVKDRPDGVALMYKELGGWEAITYRELYER-VRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVP 99 (613)
T ss_pred HHHHHhhcCCcceeEeeecCCcceEeeHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEe
Confidence 44555666676555543 3468999999997 999999999999977999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccC---CCCCCCcccHHHHHHhccC---CCCc
Q psy2835 80 MYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG---KPDKPGVISWDELMELGRA---APDE 153 (305)
Q Consensus 80 i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~l~~~~~~---~~~~ 153 (305)
+.+..++++++++|++++++++|++.....+.+......++.........+ .........++........ ....
T Consensus 100 ~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (613)
T COG1022 100 IYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSA 179 (613)
T ss_pred cCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhhhhccc
Confidence 999999999999999999999999997666777666665443221111111 0000001111110000000 0000
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-cCCCCceEEEeCchhHHHHHHHHHHHHHHh
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTV 232 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~ 232 (305)
.......+..++|+|.|+|||||||.||||++||+|+.+++........ . +++|+.++.+|+.|++..++.....+..
T Consensus 180 ~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~-~~~d~~LsfLPlaHi~Er~~~~~~~~~~ 258 (613)
T COG1022 180 GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPI-GPGDRVLSFLPLAHIFERAFEGGLALYG 258 (613)
T ss_pred ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCC-CCCcEEEEeCcHHHHHHHHHHHHHHhhc
Confidence 0001112467899999999999999999999999999999999999986 7 8999999999999999998765555555
Q ss_pred CcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhh
Q psy2835 233 AATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297 (305)
Q Consensus 233 G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~ 297 (305)
|+++..... +.++++.+++.|||++.++|.+|+++.+....+..+.+-.+..+|.||.+.+.
T Consensus 259 g~~~~~~~~---~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~ 320 (613)
T COG1022 259 GVTVLFKED---PRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAY 320 (613)
T ss_pred ceEEEecCC---HHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 555554433 47999999999999999999999999999888888888899999999998874
No 6
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=9e-39 Score=298.72 Aligned_cols=283 Identities=23% Similarity=0.378 Sum_probs=224.8
Q ss_pred hHHHHHHHhcccceeeec----c---C--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF----N---A--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~----~---~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.. . + +++||+|+.++ ++++|++|.++|+++||+|+|+++|+++|+++++||+++
T Consensus 47 ~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 125 (660)
T PLN02861 47 QFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDA-AIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQ 125 (660)
T ss_pred HHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 568888999999777642 1 1 36999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-CccEEEEccCCCCC---------CCcccHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDK---------PGVISWDEL 143 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~---------~~~~~~~~l 143 (305)
|++++|+++.++.+++.+++++++++++|++.+. .+.+......++ .++.++.+++.... ....+++++
T Consensus 126 G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~-~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (660)
T PLN02861 126 GITYVPLYDTLGANAVEFIINHAEVSIAFVQESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEF 204 (660)
T ss_pred CCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHH-HHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHH
Confidence 9999999999999999999999999999998763 455554444432 46666666542110 112456666
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-----cCCCCceEEEeCchhH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-----LESAALSVISFLPLSH 218 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~ 218 (305)
......... ..+..++++++|+|||||||.||||++||+++..++......++ + ..+|++++.+|++|
T Consensus 205 ~~~~~~~~~------~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H 277 (660)
T PLN02861 205 SLMGSLDCE------LPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVA-TEEDSYFSYLPLAH 277 (660)
T ss_pred HHhCcccCC------CCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccC-CCCCEEEEECcHHH
Confidence 543321111 01346799999999999999999999999999988776555433 4 67899999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhh
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~ 297 (305)
+++... .+.++..|+++++.+. + +..+++.|++++||+++++|++++.|.+.........+.++..++.|+.+.+.
T Consensus 278 ~~~~~~-~~~~l~~G~~v~~~~~-~-~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~ 353 (660)
T PLN02861 278 VYDQVI-ETYCISKGASIGFWQG-D-IRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKL 353 (660)
T ss_pred HHHHHH-HHHHHHhCCEEEEeCC-C-HHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999876 4568999999998753 3 68999999999999999999999999886655555667778888887766443
No 7
>PLN02614 long-chain acyl-CoA synthetase
Probab=100.00 E-value=1.4e-38 Score=297.27 Aligned_cols=281 Identities=26% Similarity=0.408 Sum_probs=217.8
Q ss_pred hHHHHHHHhcccceeeec----cC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF----NA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~----~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.+ .+ +.+||+|+.++ ++++|++|.++|+++||+|+|+++|+++|+++++||+++
T Consensus 49 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~ 127 (666)
T PLN02614 49 DVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDI-VIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAH 127 (666)
T ss_pred HHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 678888999999877752 11 24899999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhc-cCCCccEEEEccCCCCC---------CCcccHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKA-QCPKLKAIVQYEGKPDK---------PGVISWDEL 143 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~---------~~~~~~~~l 143 (305)
|++++|+++.++.+++.+++++++++++|++.+. ...+..... ..+.++.++.+++.... ....+++++
T Consensus 128 Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (666)
T PLN02614 128 GLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK-ISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEF 206 (666)
T ss_pred CCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH-HHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHH
Confidence 9999999999999999999999999999998763 333322211 12235666666432100 113456666
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-----ccCCCCceEEEeCchhH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSH 218 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~~ 218 (305)
.......... .....++|+++|+|||||||.||||++||+++...+......+ ++ ..+|++++.+|++|
T Consensus 207 ~~~~~~~~~~-----~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~-~~~d~~l~~lPl~H 280 (666)
T PLN02614 207 LKLGEGKQYD-----LPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAAL-TVKDVYLSYLPLAH 280 (666)
T ss_pred HhhcccCCCC-----CCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCC-CCCcEEEEeccHHH
Confidence 5433211100 0123578999999999999999999999999998877655443 46 78999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKS 294 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~ 294 (305)
+++... .+..+..|+++++.+. ++..+++.+++++||+++++|++++++.+.......+.+.++..++.++.+
T Consensus 281 ~~~~~~-~~~~l~~G~~v~~~~~--~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 353 (666)
T PLN02614 281 IFDRVI-EECFIQHGAAIGFWRG--DVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFS 353 (666)
T ss_pred HHHHHH-HHHHHHhCCEEEEeCC--CHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999865 5677889999998863 368999999999999999999999999876655444445556666665544
No 8
>PRK07788 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.7e-39 Score=298.69 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=234.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.++++.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 53 ~~~~~~a~~~pd~~Al~~~~~~~Ty~el~~~-~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~ 131 (549)
T PRK07788 53 GLVAHAARRAPDRAALIDERGTLTYAELDEQ-SNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNT 131 (549)
T ss_pred HHHHHHHHHCCCceEEEECCCceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 5788999999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--CCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
.++.+++.++++++++++++++.+. ...+.++....+....++...... ...++..++++.......+.
T Consensus 132 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 202 (549)
T PRK07788 132 GFSGPQLAEVAAREGVKALVYDDEF-TDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPL-------- 202 (549)
T ss_pred CCCHHHHHHHHHhcCCcEEEECchh-HHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCCC--------
Confidence 9999999999999999999999773 344544444444444433222211 11345667777654322111
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
+...+++++++|||||||.||+|.+||+++...+......+++ ..+|++++..|++|.+|+.. ++.++..|+++++.+
T Consensus 203 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~ 280 (549)
T PRK07788 203 PKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPF-RAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRR 280 (549)
T ss_pred CCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCC-CcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECC
Confidence 2245788999999999999999999999999988887788888 89999999999999999865 788999999999987
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
.++ +..+++.+++++||++.++|+++..+++.... ...++++||.++++ +.+.+|.++++.|
T Consensus 281 ~~~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~Y 355 (549)
T PRK07788 281 RFD-PEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLY 355 (549)
T ss_pred CCC-HHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceecc
Confidence 655 79999999999999999999999999886554 45567888866544 2334566777665
No 9
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=100.00 E-value=4.9e-39 Score=284.82 Aligned_cols=268 Identities=19% Similarity=0.168 Sum_probs=212.5
Q ss_pred HHHHHHh-cccceeeeccC-----CccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 5 LKLGLER-YHSVCIIGFNA-----PEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 5 l~~~~~~-~~~~~~~~~~~-----~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
+++.... .++..++.+.+ +++||+||.++ ++++|+.|++ .|+ +||||++++||.++.+++++||+++|++.
T Consensus 15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~-v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~ 92 (528)
T COG0365 15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRRE-VARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIP 92 (528)
T ss_pred hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHH-HHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 4444443 34555555542 57999999996 9999999987 568 99999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHH-----H-HhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKIL-----K-VKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~-----~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
+|+.+.++++++...+++.+++++|+.+.. ..... + +.+.... ++++.... ..|+++........
T Consensus 93 ~~vf~~f~~~al~~Ri~d~~~k~vit~d~~-~~~gk~~~~~~~~~~~~~~---~iv~~r~~-----~~~~~~~~~~~~~~ 163 (528)
T COG0365 93 AVVSPGLSAEAVADRIADLGPKVLIADDGT-FRNGKEIALLEDADAVLSS---VVVVPRLG-----LWYDEAVEKASEKF 163 (528)
T ss_pred eecccCCCHHHHHHHHHccCCCEEEEeccc-ccccccccchhHHHHhhcc---eEEecccc-----ccHHHHhhccCCCC
Confidence 999999999999999999999999998753 11111 1 1111111 33232211 56777776543222
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.. .+...+|+++|+|||||||+||||+|+|..+......... .+.+ .++|++++..++.|++|..+.++.+|
T Consensus 164 ~~------~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~-~~~Dv~w~~ad~GW~~g~~~~v~~pL 236 (528)
T COG0365 164 EF------EPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDL-LPGDRFWNSSDPGWIYGLWYSVFSPL 236 (528)
T ss_pred Cc------cccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCC-CCCCEEEeCCCchhhhCchHHHHHHH
Confidence 21 1357899999999999999999999999988877665444 5677 89999999999999999999999999
Q ss_pred HhCcEEEEeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.+|+++++...... |+.+++.+++|++|+++..|+.+++|.+......++++|||.+...
T Consensus 237 ~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 237 ASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred hcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 99999999865433 7899999999999999999999999998766667899999966543
No 10
>KOG1176|consensus
Probab=100.00 E-value=3e-39 Score=287.60 Aligned_cols=256 Identities=21% Similarity=0.300 Sum_probs=209.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcC--CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLG--LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g--~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
++.+||+|+.++ +.++|..|.++| +++||+|+++++|++++..+++||+..|+++.++||.+.+.++.++++.++++
T Consensus 43 g~~~T~~e~~~~-~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~k 121 (537)
T KOG1176|consen 43 GRELTYSELHDR-CRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPK 121 (537)
T ss_pred CcEEcHHHHHHH-HHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCe
Confidence 489999999996 999999999876 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCC------ccc-HHHHHHhccCCCCchhHHhhhccCCCceeEEEe
Q psy2835 100 ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG------VIS-WDELMELGRAAPDESLDRVLETIATNECCTLVY 172 (305)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 172 (305)
++|++... .+.+.+....+. ..++++........ ... +..+...... . . ..+...+|++.|+|
T Consensus 122 iif~d~~~-~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~---~~~~~~dd~~~il~ 191 (537)
T KOG1176|consen 122 LIFVDEDF-YDKISEATSKLA--LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP--D--G---IRPVSEDDTAAILY 191 (537)
T ss_pred EEEEcCch-HHHHHHHHhhcC--CceEEEecccCccccccccccccchhhccccCCC--c--c---cccCCCCCeEEEec
Confidence 99999884 577776665554 33444443311100 011 2222211110 0 0 23456799999999
Q ss_pred ccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHh
Q psy2835 173 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTL 252 (305)
Q Consensus 173 TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i 252 (305)
||||||.||||++||++++.+.........+ ..+|+.++.+|++|++|+...+.+.+..|++++..+.++ ++.+++.+
T Consensus 192 SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~-~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~-~~~~~~~i 269 (537)
T KOG1176|consen 192 SSGTTGLPKGVVLSHRNLIANTLSIKIGWEL-TSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFD-AELFLDLI 269 (537)
T ss_pred CCCCCCCCceEEEecHHHHHHHHHhhhcccC-CCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCC-HHHHHHHH
Confidence 9999999999999999999998887777777 789999999999999999885555666666666666665 79999999
Q ss_pred hhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 253 LEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 253 ~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++|++|++.++|.++..|++++....++++|+|.+.++
T Consensus 270 ~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~g 307 (537)
T KOG1176|consen 270 EKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSG 307 (537)
T ss_pred HHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEec
Confidence 99999999999999999999987888999999988654
No 11
>PRK07529 AMP-binding domain protein; Validated
Probab=100.00 E-value=2.3e-38 Score=295.03 Aligned_cols=293 Identities=19% Similarity=0.217 Sum_probs=232.2
Q ss_pred hHHHHHHHhcccceeeec--------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 3 AFLKLGLERYHSVCIIGF--------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
++|++.++++|++.++.+ .++++||+||.++ +.++|+.|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 29 ~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~-v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G 107 (632)
T PRK07529 29 ELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLAD-VTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG 107 (632)
T ss_pred HHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 578888999999777754 3468999999996 9999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCC----------------C
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPD----------------K 134 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~----------------~ 134 (305)
+++|+++.++.+++.+++++++++++++++.+ ..+.+.+.....+..+.++.++.... .
T Consensus 108 -i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (632)
T PRK07529 108 -IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAH 186 (632)
T ss_pred -EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccc
Confidence 57999999999999999999999999997542 23455555566677777776654321 1
Q ss_pred CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeC
Q psy2835 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFL 214 (305)
Q Consensus 135 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 214 (305)
.+...+.+.+......... ......++++++++|||||||.||+|.+||+++..+.......+++ .++|++++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~ 261 (632)
T PRK07529 187 ARILDFDAELARQPGDRLF----SGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGL-GPGDTVFCGL 261 (632)
T ss_pred cccCCHHHHHhcCCCcccc----ccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCC-CCCCEEEEec
Confidence 2234555554432211100 0012367999999999999999999999999999988877777888 8999999999
Q ss_pred chhHHHHHHHHHHHHHHhCcEEEEeCCcc--c---hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 215 PLSHIAAQTVDIYSVMTVAATLWFADKNA--L---KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 215 pl~~~~g~~~~~~~~l~~G~~~v~~~~~~--~---~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
|++|++|....++.++..|+++++.+... . ...+++.++++++|++.++|+++..|++.+. ...++++||.+++
T Consensus 262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~ 340 (632)
T PRK07529 262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALC 340 (632)
T ss_pred CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEE
Confidence 99999999888999999999999986421 1 2578899999999999999999999987643 2346788886554
Q ss_pred H-----------HHHHhhhHHHhhh
Q psy2835 290 N-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 290 ~-----------~a~~~g~~~~~~~ 303 (305)
+ +....|+++++.|
T Consensus 341 gg~~l~~~l~~~~~~~~g~~l~~~Y 365 (632)
T PRK07529 341 GAAPLPVEVFRRFEAATGVRIVEGY 365 (632)
T ss_pred cCCCCCHHHHHHHHHHhCCcEeeee
Confidence 3 3344677777766
No 12
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=100.00 E-value=2.5e-37 Score=288.60 Aligned_cols=286 Identities=24% Similarity=0.372 Sum_probs=226.7
Q ss_pred hHHHHHHHhcccceeeecc----C-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFN----A-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~----~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++... + +.+||+|+.++ ++++|..|.+.|+++||+|+|+++|+++|+++++||+++
T Consensus 46 ~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~ 124 (660)
T PLN02430 46 DIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEE-VLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAH 124 (660)
T ss_pred HHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 5788888999997776431 1 24799999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---------CCcccHHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---------PGVISWDELM 144 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~l~ 144 (305)
|++++|+++.++.+++.+++++++++++|+++......+.......+.++.++.+++.... ....+|+++.
T Consensus 125 G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (660)
T PLN02430 125 SLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFL 204 (660)
T ss_pred CCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHH
Confidence 9999999999999999999999999999998764333333333344566777776542210 1134577766
Q ss_pred HhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-----ccCCCCceEEEeCchhHH
Q psy2835 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSHI 219 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~~~ 219 (305)
..+...+... ....++++++|+|||||||.||||++||+++..++....... ++ +.+|++++.+|++|+
T Consensus 205 ~~~~~~~~~~-----~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~-~~~d~~ls~lPl~H~ 278 (660)
T PLN02430 205 HMGKENPSET-----NPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKM-THDDVYLSFLPLAHI 278 (660)
T ss_pred HhhccCCCCC-----CCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCC-CCCCEEEEeCcHHHH
Confidence 5443221111 123578999999999999999999999999998876654321 45 788999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhhH
Q psy2835 220 AAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQ 298 (305)
Q Consensus 220 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~~ 298 (305)
++... .+.++..|+++++.... +..+++.+++++||++.++|.+++++.+.......+.+.++..++.++.+.+..
T Consensus 279 ~~~~~-~~~~l~~G~~i~~~~~~--~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 354 (660)
T PLN02430 279 LDRMI-EEYFFRKGASVGYYHGD--LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA 354 (660)
T ss_pred HHHHH-HHHHHHcCCEEEEeCCC--hhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99876 45678899999887653 478999999999999999999999999877666666777888888887776543
No 13
>KOG1256|consensus
Probab=100.00 E-value=6.4e-38 Score=278.28 Aligned_cols=287 Identities=30% Similarity=0.424 Sum_probs=241.5
Q ss_pred hHHHHHHHhcccceeeec--------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 3 AFLKLGLERYHSVCIIGF--------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
+++.+....+++..++.. ..+.+||+|..++ +++++..|++.|+++++.|+|++.|++||+++.+||...|
T Consensus 79 ~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~-~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~ 157 (691)
T KOG1256|consen 79 EGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYER-AENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYS 157 (691)
T ss_pred HHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHH-HHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcC
Confidence 567777888888555433 1247999999996 9999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhc--cCCCccEEEEccCCCCC-----C----CcccHHHH
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKA--QCPKLKAIVQYEGKPDK-----P----GVISWDEL 143 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~-----~----~~~~~~~l 143 (305)
.+.|||...++++++++++++....++|+|++...+.+.+... +.+.++.++.+++..+. . .+.+|+++
T Consensus 158 ~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~ 237 (691)
T KOG1256|consen 158 LVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEF 237 (691)
T ss_pred CEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHH
Confidence 9999999999999999999999999999998877788877766 47889999999987643 2 27789999
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh--ccC---CCCceEEEeCchhH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF--KLE---SAALSVISFLPLSH 218 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~---~~~~~~l~~~pl~~ 218 (305)
.+.+.+....+ + .++.++|.|.|.|||||||.||||++||+|++..+....... ... ...|.+++.+||.|
T Consensus 238 ~~lG~~~~~~~---~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAH 313 (691)
T KOG1256|consen 238 EELGKKNQRKP---R-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAH 313 (691)
T ss_pred HhhcccccCCC---C-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHH
Confidence 98876333222 1 256889999999999999999999999999999655322111 110 34799999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhh
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~ 297 (305)
++..+.. ...+..|+++.|.+... ..+.+.+++.+||++.++|.+++++.+.......+.+.+|+.+++||.....
T Consensus 314 i~er~~~-~~~~~~G~~IgF~~gD~--~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~ 389 (691)
T KOG1256|consen 314 IFERVVE-LYTFYIGAKIGFARGDI--LKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKL 389 (691)
T ss_pred HHHHHHH-HhHhhcccEEEEecCCh--HHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 9999885 44458999999999664 7888889999999999999999999999888888777899999999988665
No 14
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=100.00 E-value=2.2e-38 Score=291.98 Aligned_cols=295 Identities=16% Similarity=0.139 Sum_probs=225.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.++++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 11 ~~~~~~~~~~p~~~a~~~~~~~~Ty~el~~~-~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl~~ 89 (563)
T PLN02860 11 QCLTRLATLRGNAVVTISGNRRRTGHEFVDG-VLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNY 89 (563)
T ss_pred HHHHHHHHhcCCceEEecCCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeCCc
Confidence 5788889999998888788889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHH-hccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC-chhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKV-KAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD-ESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 160 (305)
.++.+++.+++++.++++++++++. ......+ ...++..+..+..++.... ....+.++......... ........
T Consensus 90 ~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (563)
T PLN02860 90 RWSFEEAKSAMLLVRPVMLVTDETC-SSWYEELQNDRLPSLMWQVFLESPSSS-VFIFLNSFLTTEMLKQRALGTTELDY 167 (563)
T ss_pred ccCHHHHHHHHHhcCceEEEEeccc-chHHHHHhhccCCceeEEEEecCcccc-cccchhhccccchhccCccccccccC
Confidence 9999999999999999999998753 1222222 1233444444444332110 00111111110000000 00000001
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
...++++++|+|||||||.||+|++||+++..+.......+++ .++|++++..|++|.+|+.. ++.++..|+++++.+
T Consensus 168 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~v~~~ 245 (563)
T PLN02860 168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGY-GEDDVYLHTAPLCHIGGLSS-ALAMLMVGACHVLLP 245 (563)
T ss_pred CCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCC-CCCCEEEEecCchhhccHHH-HHHHHHcCceEEecC
Confidence 2357899999999999999999999999999887777677788 89999999999999999854 889999999999988
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh--hcccChHHHHHHH-----------HHHHh-hhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV--GKQTTGVKRWIAN-----------YAKST-SLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~~sl~~~~~~-----------~a~~~-g~~~~~~~ 303 (305)
.++ +..+++.++++++|++.++|+++..|++..... ..++++||.++++ +.+.+ |+++++.|
T Consensus 246 ~~~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~Y 321 (563)
T PLN02860 246 KFD-AKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAY 321 (563)
T ss_pred CCC-HHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCC
Confidence 765 789999999999999999999999998865432 3456788766544 22233 67777766
No 15
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=100.00 E-value=2.5e-37 Score=290.27 Aligned_cols=283 Identities=20% Similarity=0.349 Sum_probs=225.6
Q ss_pred hHHHHHHHhcccceeeec------------cC-----------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGF------------NA-----------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFN 59 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------------~~-----------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n 59 (305)
+++++.++++||..++.+ ++ +.+||+|+.++ ++++|++|.++|+++||+|+|+++|
T Consensus 62 ~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~lG~~~gd~Vai~~~n 140 (696)
T PLN02387 62 ALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFER-VCNFASGLVALGHNKEERVAIFADT 140 (696)
T ss_pred HHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCC
Confidence 688999999999777731 12 13899999996 9999999999999999999999999
Q ss_pred ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC-----
Q psy2835 60 APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----- 134 (305)
Q Consensus 60 ~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 134 (305)
+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+ ..+.+.++..+++.++.++.+++....
T Consensus 141 ~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~ 219 (696)
T PLN02387 141 RAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSK-QLKKLIDISSQLETVKRVIYMDDEGVDSDSSL 219 (696)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHH-HHHHHHHHhhccCCceEEEEECCCCchhhhhh
Confidence 99999999999999999999999999999999999999999999876 457777777777888888887653211
Q ss_pred -----CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-ccCCCCc
Q psy2835 135 -----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAAL 208 (305)
Q Consensus 135 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~ 208 (305)
....+++++...+...+... ....++|+++|+|||||||.||||++||+++..++......+ ++ .++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~-~~~d 293 (696)
T PLN02387 220 SGSSNWTVSSFSEVEKLGKENPVDP-----DLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKL-GKND 293 (696)
T ss_pred hccCCcEEEEHHHHHHhhccCCCCC-----CCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC-CCCC
Confidence 11245666665433211111 123679999999999999999999999999999887765553 56 8899
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc-------hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhccc
Q psy2835 209 SVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL-------KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQT 281 (305)
Q Consensus 209 ~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~-------~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 281 (305)
++++.+|++|++++.. ....+..|+++.+...... +..++..+++++||++.++|.+++++.+.........
T Consensus 294 ~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~ 372 (696)
T PLN02387 294 VYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAK 372 (696)
T ss_pred EEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcc
Confidence 9999999999999876 4556778888776543211 1345678999999999999999999998766555556
Q ss_pred ChHHHHHHHHHHH
Q psy2835 282 TGVKRWIANYAKS 294 (305)
Q Consensus 282 ~sl~~~~~~~a~~ 294 (305)
+.+...++.++..
T Consensus 373 ~~~~~~l~~~a~~ 385 (696)
T PLN02387 373 GGLAKKLFDIAYK 385 (696)
T ss_pred cHHHHHHHHHHHH
Confidence 6677777776654
No 16
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=100.00 E-value=9.1e-38 Score=287.04 Aligned_cols=294 Identities=15% Similarity=0.159 Sum_probs=235.1
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+++++.++.+|+..++.+.+ +.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++|++++|++
T Consensus 28 ~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~ 106 (547)
T PRK13295 28 DDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAAL-VDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAV 106 (547)
T ss_pred HHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcE
Confidence 57888889999987776654 78999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC-
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP- 151 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~- 151 (305)
++|++|..+.+++.++++.++++++++++.. ..+.+.++....+..+.++.++.. +..++.++........
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 182 (547)
T PRK13295 107 LNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD----GADSFEALLITPAWEQE 182 (547)
T ss_pred EeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC----CccCHHHHhhCCccccc
Confidence 9999999999999999999999999998752 123334444455566666655432 2234555543211000
Q ss_pred -CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 -DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
............++++++++|||||||.||+|++||+++..++......+++ .++|++++..|++|.+|++..++.++
T Consensus 183 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGL-GADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred cccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCC-CCCCeEEEecCchhhhhHHHHHHHHH
Confidence 0000001112456899999999999999999999999999988888888888 89999999999999999988899999
Q ss_pred HhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHH
Q psy2835 231 TVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQH 299 (305)
Q Consensus 231 ~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~ 299 (305)
..|+++++.+..+ +..+++.++++++|++.++|+++..+.+.......++++||.++.+ +.+.+|+++
T Consensus 262 ~~G~~~~~~~~~~-~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~ 340 (547)
T PRK13295 262 MLGATAVLQDIWD-PARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGAKI 340 (547)
T ss_pred HcCCeEEeCCCCC-HHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhCCCe
Confidence 9999999988765 6999999999999999999999999988766666778888766543 233456777
Q ss_pred Hhhh
Q psy2835 300 YMAY 303 (305)
Q Consensus 300 ~~~~ 303 (305)
++.|
T Consensus 341 ~~~Y 344 (547)
T PRK13295 341 VSAW 344 (547)
T ss_pred EEec
Confidence 6665
No 17
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=288.89 Aligned_cols=281 Identities=19% Similarity=0.250 Sum_probs=213.8
Q ss_pred hHHHHHHHhcccceeeecc-----CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGFN-----APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~-----~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|++.++++|+..++.+. .+++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 43 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~-v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~ 121 (614)
T PRK08180 43 DRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALER-VRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPY 121 (614)
T ss_pred HHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeE
Confidence 5678888999997777553 258999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCC-----HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 78 AGMYTTNS-----PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 78 v~i~~~~~-----~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
+|+++.++ .+++.+++++++++++++++............ .....++..+.........+++++........
T Consensus 122 vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (614)
T PRK08180 122 APVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV--PADVEVVAVRGAVPGRAATPFAALLATPPTAA- 198 (614)
T ss_pred eeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc--cCCceEEEecCCCCCcccccHHHHhccccccc-
Confidence 99999998 79999999999999999986522222111111 11122333332211112345666654321100
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCC--CCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES--AALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.........++++++|+|||||||.||||++||+++..++......+++ . .++++++.+|++|.+|+...++.++
T Consensus 199 --~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~~l~~lPl~h~~g~~~~~~~~l 275 (614)
T PRK08180 199 --VDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPF-LAEEPPVLVDWLPWNHTFGGNHNLGIVL 275 (614)
T ss_pred --hhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccc-cCCCCcEEEEecchHHHhhHHHHHHHHH
Confidence 0011113457899999999999999999999999999988877666665 3 5689999999999999887788999
Q ss_pred HhCcEEEEeCCccch---hHHHHHhhhcCCcEEEechHHHHHHHHHHHH----hhcccChHHHHHHH
Q psy2835 231 TVAATLWFADKNALK---GSLINTLLEVRPHVFLAVPRVWEKIHEKLMA----VGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~~~~~---~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~sl~~~~~~ 290 (305)
..|+++++.+....+ ..+++.++++++|+++++|.++..|++.... ...++++||.++++
T Consensus 276 ~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~g 342 (614)
T PRK08180 276 YNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYA 342 (614)
T ss_pred hcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEc
Confidence 999999997643222 4678889999999999999999999875432 23456788766654
No 18
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.1e-37 Score=285.69 Aligned_cols=279 Identities=13% Similarity=0.124 Sum_probs=214.5
Q ss_pred hHHHHHHHhcccceeeeccC-CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~-~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+.+.+.++++|+..++.+.+ +++||+||.++ ++++|+.|.+. +||+|+++++|+++++++++||+++|++++|++
T Consensus 23 ~~~~~~~~~~p~~~a~~~~~~~~~Ty~el~~~-~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 23 ESFLKLCSEMTTATVCWDEQLGKLSYNQVRKA-VIALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHHHHHHhCCCceEEEeCCCCcccHHHHHHH-HHHHHHHHhhc---cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 45677888899977775544 78999999996 99999999873 899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-CccEEEEccCCCCCCCcccHHHHHHhcc--CCCCchhH--
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELGR--AAPDESLD-- 156 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~-- 156 (305)
+..+.+++.++++++++++++++.+. ...+.+...... ....++.+++.. ....+.+...... ..+.....
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQL-MQHLAQTHGEDAEYPFSLIYMEEVR---KELSFWEKCRIGIYMSIPFEWLMRW 174 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHH-HHHHhhhhhccccccccEEEEehhh---hhccHHHhhhhhhhhcCCchhhhhc
Confidence 99999999999999999999998763 344433322111 111233332211 0111111111000 00000000
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
.......++++++|+|||||||.||||.+||+++..+.......+++ +.+|++++.+|++|.+|+...++.++..|+++
T Consensus 175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~v 253 (539)
T PRK06334 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSP-KEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPV 253 (539)
T ss_pred ccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC-CCCceEEEecchHhhhhhHHHHHHHHHcCCeE
Confidence 00113467899999999999999999999999999988777777888 89999999999999999887788999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.....++..+++.|+++++|++.++|++++.|++.......++++||.++++
T Consensus 254 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g 307 (539)
T PRK06334 254 VFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIG 307 (539)
T ss_pred EEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEEC
Confidence 988654457999999999999999999999999998776666778888876654
No 19
>PLN03052 acetate--CoA ligase; Provisional
Probab=100.00 E-value=1.1e-37 Score=292.94 Aligned_cols=283 Identities=14% Similarity=0.134 Sum_probs=214.0
Q ss_pred hhHHHHHHHhcccceeeeccC--------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 2 KAFLKLGLERYHSVCIIGFNA--------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~--------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+.+|++..++.|+..++.+.+ +++||+||.++ ++++|+.|++.|+++||+|+++++|+++++++++||+++
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~ 256 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQ-VSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILA 256 (728)
T ss_pred HHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 345666555677766666543 37999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHH-----HHHHHHHhccCCCccEEEEccCCCC------CCCcccHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ-----LEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWDE 142 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~ 142 (305)
|++++|+++.++.+++.+++++++++++|+++... .+....+..... ..++++..... ......|++
T Consensus 257 Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~~~~~~~~~~ 334 (728)
T PLN03052 257 GCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKLREGDMSWDD 334 (728)
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCccccccccCCccHHH
Confidence 99999999999999999999999999999976421 111111111111 12222221110 012345777
Q ss_pred HHHhccCCC-CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHH
Q psy2835 143 LMELGRAAP-DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 221 (305)
Q Consensus 143 l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g 221 (305)
+........ ..... ......+++++|+|||||||+||||+++|.+++.........+++ .++|++++..|++|++|
T Consensus 335 ~~~~~~~~~~~~~~~--~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l-~~~d~~~~~~~l~w~~g 411 (728)
T PLN03052 335 FLARANGLRRPDEYK--AVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDI-RKGDIVCWPTNLGWMMG 411 (728)
T ss_pred HHhcccccccccccc--ccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCC-CCCcEEEECCCcHHHhH
Confidence 654321110 00000 012246899999999999999999999999987776665556778 89999999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH
Q psy2835 222 QTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY 291 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~ 291 (305)
. +.++.+|..|+++++.+....+..+++.+++++||++.++|++++.|.+.......++++||.++.++
T Consensus 412 ~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~G 480 (728)
T PLN03052 412 P-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTG 480 (728)
T ss_pred H-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecC
Confidence 7 45889999999999998644457899999999999999999999999875434566788999776543
No 20
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=100.00 E-value=9.4e-38 Score=291.01 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=214.6
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.++++.+.+.|+..++.+ .++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 56 ~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav 134 (628)
T TIGR02316 56 NALDRHLDERGEQLALVTVSSETGQERTLTYRQLHRE-VNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134 (628)
T ss_pred HHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 466666677888766654 2357999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccC-CCccEEEEccCCCCC-----CCcccHHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQC-PKLKAIVQYEGKPDK-----PGVISWDE 142 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~-~~~~~~i~~~~~~~~-----~~~~~~~~ 142 (305)
++|+++.++.+++.+++++++++++|+++.. ....+.+..... ....+++.++..... .....+++
T Consensus 135 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 214 (628)
T TIGR02316 135 HSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAA 214 (628)
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHH
Confidence 9999999999999999999999999997531 012222222222 234455555532111 11234555
Q ss_pred HHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHH-HHHHHHhhccCCCCceEEEeCchhHHHH
Q psy2835 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAA 221 (305)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~~~~g 221 (305)
+......... + .....++++++|+|||||||.||||+++|.++..+ .......+++ +++|++++..|++|+.|
T Consensus 215 ~~~~~~~~~~-~----~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g 288 (628)
T TIGR02316 215 LRTQHEDAQV-P----VEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGI-RAGQVMFSASDVGWVVG 288 (628)
T ss_pred HhhccccCCC-C----ceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCC-CCCcEEEEcCCCCeeeh
Confidence 5443211100 0 01236789999999999999999999999998654 3445556778 88999999999999998
Q ss_pred HHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH
Q psy2835 222 QTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN 290 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~ 290 (305)
+...++.++..|+++++.+. ..++..+++.++++++|+++++|++++.|.+... ....++++||.++++
T Consensus 289 ~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~g 362 (628)
T TIGR02316 289 HSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLA 362 (628)
T ss_pred hhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEe
Confidence 87778999999999999874 2236889999999999999999999999877532 234567888866543
No 21
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=3.8e-37 Score=280.91 Aligned_cols=278 Identities=19% Similarity=0.279 Sum_probs=233.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|++.++.+|+..++.+.++++||+||.++ +.++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 9 ~~l~~~~~~~~~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 87 (513)
T PRK07656 9 ELLARAARRFGDKEAYVFGDQRLTYAELNAR-VRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNT 87 (513)
T ss_pred HHHHHHHHHCCCCeEEEeCCCceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCc
Confidence 5678889999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---CCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---PGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
..+.+++.+++++.+++++++++.. ...........+..+.++........ ....+|+++..........
T Consensus 88 ~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 160 (513)
T PRK07656 88 RYTADEAAYILARGDAKALFVLGLF-LGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERA------ 160 (513)
T ss_pred ccCHHHHHHHHhhcCceEEEEchhh-HHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCCc------
Confidence 9999999999999999999998873 34444444555556666544433211 1224566666443221111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++++|||||||.||+|.+||.++...+......+++ +++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 161 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~ 239 (513)
T PRK07656 161 PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGL-TEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL 239 (513)
T ss_pred CCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCC-CCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec
Confidence 23467899999999999999999999999999988888888888 99999999999999999888889999999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+... +..+++.++++++|++.++|.++..+.+.......+++++|.++++
T Consensus 240 ~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~ 289 (513)
T PRK07656 240 PVFD-PDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTG 289 (513)
T ss_pred CcCC-HHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEec
Confidence 7665 7999999999999999999999999998766666678888877654
No 22
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.9e-37 Score=282.27 Aligned_cols=289 Identities=19% Similarity=0.243 Sum_probs=232.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|.+.+.++|+..++.+.++++||+||.++ +.++|..|.+. |+++||+|+++++|+++++++++||+++|++++|++
T Consensus 14 ~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~-v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 92 (546)
T PRK08314 14 HNLEVSARRYPDKTAIVFYGRAISYRELLEE-AERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVN 92 (546)
T ss_pred HHHHHHHHHcCCCcceeecCceecHHHHHHH-HHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeecC
Confidence 5678888999998888888999999999996 99999999999 999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC-----------------------CCCCcc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-----------------------DKPGVI 138 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~ 138 (305)
+..+.+++.++++.+++++++++... ...+......+ ..+.++...... ...++.
T Consensus 93 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (546)
T PRK08314 93 PMNREEELAHYVTDSGARVAIVGSEL-APKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVV 170 (546)
T ss_pred cCcCHHHHHHHHHhCCCeEEEEccch-hhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccccccccccccccc
Confidence 99999999999999999999998773 34444443332 233333221000 001233
Q ss_pred cHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhH
Q psy2835 139 SWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218 (305)
Q Consensus 139 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~ 218 (305)
.+++........ ......++++++|+|||||||.||+|.+||+++..++......+++ .++|++++.+|++|
T Consensus 171 ~~~~~~~~~~~~-------~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~ 242 (546)
T PRK08314 171 AWKEALAAGLAP-------PPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNS-TPESVVLAVLPLFH 242 (546)
T ss_pred cHHHHhcccCCC-------CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC-CCCceEEEEcCchH
Confidence 455444321110 0123467899999999999999999999999999998888778888 99999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH-------
Q psy2835 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY------- 291 (305)
Q Consensus 219 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~------- 291 (305)
.+|+...++.++..|+++++.+... +..+++.++++++|++.++|.++..++........+++++|.++.++
T Consensus 243 ~~g~~~~~~~~l~~G~~i~~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~ 321 (546)
T PRK08314 243 VTGMVHSMNAPIYAGATVVLMPRWD-REAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAV 321 (546)
T ss_pred HHHHHHHHHHHHHcCCeEEecCCCC-HHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHH
Confidence 9999888899999999999998765 68999999999999999999999998876544555678888766543
Q ss_pred ----HHHhhhHHHhhh
Q psy2835 292 ----AKSTSLQHYMAY 303 (305)
Q Consensus 292 ----a~~~g~~~~~~~ 303 (305)
...+|+++++.|
T Consensus 322 ~~~~~~~~~~~~~~~Y 337 (546)
T PRK08314 322 AERLKELTGLDYVEGY 337 (546)
T ss_pred HHHHHHHcCCcEEecc
Confidence 333566666655
No 23
>PLN02654 acetate-CoA ligase
Probab=100.00 E-value=2.1e-37 Score=289.78 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=209.4
Q ss_pred hHHHHHHH-hcccceeeecc------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLE-RYHSVCIIGFN------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~-~~~~~~~~~~~------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
.+|++.++ .+|+..++.+. ++.+||+||.++ +.++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus 92 ~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 92 NCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDR-VCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 46666554 47787776552 258999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccC----CCccEEEEccCCCC----C-----
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQC----PKLKAIVQYEGKPD----K----- 134 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~----~~~~~~i~~~~~~~----~----- 134 (305)
+++|+++.++.+++..++++++++++|+++... ...+.+..... .....++.+..... .
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 999999999999999999999999999986521 01122221111 11122222221100 0
Q ss_pred CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHH-HHHHHHhhccCCCCceEEEe
Q psy2835 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISF 213 (305)
Q Consensus 135 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~ 213 (305)
.....|+++..... ... ......++++++|+|||||||.||||+++|.+++.. .......+++ +++|++++.
T Consensus 251 ~~~~~~~~~~~~~~--~~~----~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~ 323 (666)
T PLN02654 251 GRDVWWQDVVPNYP--TKC----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDY-KPTDVYWCT 323 (666)
T ss_pred CCcccHHHHhhcCC--CCC----CceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCC-CCCcEEEEc
Confidence 01122444432211 000 011246799999999999999999999999998653 3455566788 999999999
Q ss_pred CchhHHHHHHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHH
Q psy2835 214 LPLSHIAAQTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWI 288 (305)
Q Consensus 214 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~ 288 (305)
.|++|+.|..+.++.+|..|+++++.+. ...+..+++.|++++||+++.+|++++.|.+... ....++++||.++
T Consensus 324 ~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~ 403 (666)
T PLN02654 324 ADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLG 403 (666)
T ss_pred CCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEE
Confidence 9999999988878999999999999874 2337899999999999999999999999987643 2345678888654
Q ss_pred H
Q psy2835 289 A 289 (305)
Q Consensus 289 ~ 289 (305)
.
T Consensus 404 ~ 404 (666)
T PLN02654 404 S 404 (666)
T ss_pred E
Confidence 4
No 24
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.6e-37 Score=286.67 Aligned_cols=290 Identities=17% Similarity=0.207 Sum_probs=228.1
Q ss_pred hHHHHHHH-hcccceeeecc----CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLE-RYHSVCIIGFN----APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~-~~~~~~~~~~~----~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
+++++.+. .+|++.++.+. .+.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 47 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~-v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v~ 125 (570)
T PRK04319 47 EAIDRHADGGRKDKVALRYLDASRKEKYTYKELKEL-SNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIV 125 (570)
T ss_pred HHHHHhhccCCCCceEEEEECCCCceeecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 45666655 46887777553 368999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC-CCCcccHHHHHHhccCCCCchhH
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD-KPGVISWDELMELGRAAPDESLD 156 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 156 (305)
+|+++.++.+++.++++++++++++++... ..... ....+..+.++.+++... ..+...+.++..........
T Consensus 126 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 199 (570)
T PRK04319 126 GPLFEAFMEEAVRDRLEDSEAKVLITTPAL-LERKP--ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDI--- 199 (570)
T ss_pred cccccccCHHHHHHHHHccCCcEEEEChhh-hhccc--hhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCCc---
Confidence 999999999999999999999999998763 22221 123455556665543321 13345566665433211111
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
....++++++++|||||||.||+|+++|+++..+.......+++ .++|++++..|++|.+|....++.++..|+++
T Consensus 200 ---~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~ 275 (570)
T PRK04319 200 ---EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDL-HEDDVYWCTADPGWVTGTSYGIFAPWLNGATN 275 (570)
T ss_pred ---cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCC-CCCceEEecCChHHhhCchHHHHHHHhcCceE
Confidence 13456899999999999999999999999999888877777888 89999999999999999888899999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH----------HHH-HhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN----------YAK-STSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~----------~a~-~~g~~~~~~~ 303 (305)
++.+...++..+++.++++++|+++++|++++.|++... ....++++||.++.+ +.. .+|.++++.|
T Consensus 276 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~Y 355 (570)
T PRK04319 276 VIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNW 355 (570)
T ss_pred EEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEece
Confidence 998765558999999999999999999999999987532 223457777765433 223 3666666655
No 25
>PLN03102 acyl-activating enzyme; Provisional
Probab=100.00 E-value=3.8e-37 Score=284.37 Aligned_cols=296 Identities=16% Similarity=0.173 Sum_probs=220.8
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.+++++.++++|+..++.+.++++||+||.++ ++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 17 ~~~l~~~~~~~p~~~Al~~~~~~~Ty~eL~~~-~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~ 95 (579)
T PLN03102 17 ITFLKRASECYPNRTSIIYGKTRFTWPQTYDR-CCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPIN 95 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCcEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecc
Confidence 46788889999998888888899999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC-----ccEEEEccCCCC----CCCcccHHHHHHhccCCCC
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK-----LKAIVQYEGKPD----KPGVISWDELMELGRAAPD 152 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~ 152 (305)
+.++.+++.++++.+++++++++.+. .+.+.++...++. ...++.++.... .....+++++.........
T Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (579)
T PLN03102 96 TRLDATSIAAILRHAKPKILFVDRSF-EPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPS 174 (579)
T ss_pred ccCCHHHHHHHHhccCCeEEEEChhh-HHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhccCCCCc
Confidence 99999999999999999999998763 3444444332221 112333332111 0123456665543221111
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHh
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTV 232 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~ 232 (305)
. .........++++++|+|||||||.||+|++||.++............+ ...++++..+|++|..|+.. .+.++..
T Consensus 175 ~-~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~-~~~~~~~ 251 (579)
T PLN03102 175 L-VARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM-GTCPVYLWTLPMFHCNGWTF-TWGTAAR 251 (579)
T ss_pred c-cccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCC-CCCCeEEecCChhhhcchhH-HHHHHHh
Confidence 0 0000112356899999999999999999999999976655444444455 67789999999999988765 6778888
Q ss_pred CcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhh
Q psy2835 233 AATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMA 302 (305)
Q Consensus 233 G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~ 302 (305)
|+++++.+... +..+++.|+++++|++.++|+++..|.+.......+.++++.+++ .+..+.|.++++.
T Consensus 252 g~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~ 330 (579)
T PLN03102 252 GGTSVCMRHVT-APEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHA 330 (579)
T ss_pred cCcEEeeccCC-hHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHHcCCeEEee
Confidence 99998887765 588999999999999999999999998764333333334443322 2333456666665
Q ss_pred h
Q psy2835 303 Y 303 (305)
Q Consensus 303 ~ 303 (305)
|
T Consensus 331 Y 331 (579)
T PLN03102 331 Y 331 (579)
T ss_pred c
Confidence 5
No 26
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.1e-36 Score=282.71 Aligned_cols=278 Identities=19% Similarity=0.197 Sum_probs=221.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|.+.++++|+..++.++++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+.+++++++||+++|++++++++
T Consensus 41 ~~l~~~a~~~p~~~Ai~~~~~~~Ty~eL~~~-~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~ 119 (600)
T PRK08279 41 DVFEEAAARHPDRPALLFEDQSISYAELNAR-ANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNT 119 (600)
T ss_pred HHHHHHHHhCCCCcEEEeCCCcccHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 5778888999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++++++++++++++. .+.+.+..........++..++ ........+.++.......+.. ........
T Consensus 120 ~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 196 (600)
T PRK08279 120 QQRGAVLAHSLNLVDAKHLIVGEEL-VEAFEEARADLARPPRLWVAGG-DTLDDPEGYEDLAAAAAGAPTT-NPASRSGV 196 (600)
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHhhhhcccceEEEecC-ccccccccHHHHhhhcccCCcc-CCCcccCC
Confidence 9999999999999999999999873 4555555444433333332222 1111122344444322211111 00111234
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
..+++++|+|||||||.||||++||+++..++......+++ +++|++++.+|++|.+|+...++.++..|+++++.+.+
T Consensus 197 ~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~ 275 (600)
T PRK08279 197 TAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRL-TPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKF 275 (600)
T ss_pred CccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCC-CCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCC
Confidence 56899999999999999999999999999999888888888 99999999999999999988778888999999998876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR 286 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~ 286 (305)
. +..+++.++++++|++.++|++++.+++..........++|.
T Consensus 276 ~-~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~ 318 (600)
T PRK08279 276 S-ASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRL 318 (600)
T ss_pred C-HHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeE
Confidence 6 689999999999999999999999988754333333445543
No 27
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=100.00 E-value=3e-37 Score=287.73 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=217.2
Q ss_pred hhHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
..+|++.++++|+..++.+.+ +.+||+||.++ +.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 60 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 138 (625)
T TIGR02188 60 YNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHRE-VCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGA 138 (625)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCC
Confidence 346667777788877775532 47999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCC-CccEEEEccCCCCC-----CCcccHH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCP-KLKAIVQYEGKPDK-----PGVISWD 141 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~~~~~ 141 (305)
+++|+++.++.+++.+++++++++++|+++.. ..+.+.+....++ .++.++.++..... .....++
T Consensus 139 v~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (625)
T TIGR02188 139 IHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWH 218 (625)
T ss_pred EEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHH
Confidence 99999999999999999999999999998642 1233444444455 45656655432211 1123455
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++......... .....++++++|+|||||||.||||+++|.++..+... ....+++ .++|++++..|++|+.
T Consensus 219 ~~~~~~~~~~~------~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 291 (625)
T TIGR02188 219 DLMAKASAYCE------PEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDI-KDGDIFWCTADVGWIT 291 (625)
T ss_pred HHHhhcCCCCC------ceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCC-CCCcEEEECCCchhhh
Confidence 55543211111 12346789999999999999999999999998765433 3445677 8899999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
|..+.++.++..|+++++.+. ..++..+++.++++++|++.++|++++.|.+.... ...++++||.++.
T Consensus 292 g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~ 365 (625)
T TIGR02188 292 GHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGS 365 (625)
T ss_pred ccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEE
Confidence 887778999999999999863 22378999999999999999999999999875432 2346778876544
No 28
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=100.00 E-value=8.2e-37 Score=280.81 Aligned_cols=292 Identities=17% Similarity=0.176 Sum_probs=233.1
Q ss_pred hHHHHHHHhcccceeeeccC-CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~-~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++++.++++|+..++.+.+ +.+||+|+.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 27 ~~~~~~~~~~pd~~a~~~~~~~~~Ty~~l~~~-v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 105 (547)
T PRK06087 27 DYWQQTARAMPDKIAVVDNHGASYTYSALDHA-ASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105 (547)
T ss_pred HHHHHHHHHCCCceEEEcCCCCEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccc
Confidence 57888889999977776654 79999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
+..+.+++.++++..+++++++++.. ..+.+.+...+.+..+.++.++.........++.++.........
T Consensus 106 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 180 (547)
T PRK06087 106 PSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTT----- 180 (547)
T ss_pred hhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCCcccC-----
Confidence 99999999999999999999997631 234444444555566666655543322233355555443221110
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
......+++++|+|||||||.||+|.+||.++..........+++ .++|++++..|++|.+|+...++.++..|++++
T Consensus 181 -~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~ 258 (547)
T PRK06087 181 -AITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNL-TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSV 258 (547)
T ss_pred -CCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCC-CCCCeEEEecchHHHHHHHHHHHHHHhcCCEEE
Confidence 113457899999999999999999999999999888777777788 899999999999999998888999999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++..+|+.+..+++.......+++++|.++.+ ...+.|+++++.|
T Consensus 259 ~~~~~~-~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~Y 333 (547)
T PRK06087 259 LLDIFT-PDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY 333 (547)
T ss_pred ecCCCC-HHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEe
Confidence 998776 6899999999999999998888777777655555567777765433 2334566666655
No 29
>PRK13382 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=8.8e-37 Score=279.81 Aligned_cols=285 Identities=14% Similarity=0.114 Sum_probs=225.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|.+.++++|+..++.+.++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 47 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~ 125 (537)
T PRK13382 47 SGFAIAAQRCPDRPGLIDELGTLTWRELDER-SDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNT 125 (537)
T ss_pred HHHHHHHHhCCCCeEEEeCCCeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEecCc
Confidence 5688899999998888888889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++.+++++++++.+. ...+.......+....++...+. .....++++........ ...
T Consensus 126 ~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~ 193 (537)
T PRK13382 126 SFAGPALAEVVTREGVDTVIYDEEF-SATVDRALADCPQATRIVAWTDE---DHDLTVEVLIAAHAGQR--------PEP 193 (537)
T ss_pred ccCHHHHHHHHHhcCCCEEEEchhh-HHHHHHHHhhccccceEEEecCC---cccccHHHHhhccCcCC--------CCC
Confidence 9999999999999999999998764 34444433333333333333221 11223444443221111 012
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||||+++|+++..+.......+.+ ..+++++...|++|.+|+. .++.++..|+++++.+.+
T Consensus 194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~-~~~~~l~~g~~~~~~~~~ 271 (537)
T PRK13382 194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPW-RAEEPTVIVAPMFHAWGFS-QLVLAASLACTIVTRRRF 271 (537)
T ss_pred CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCC-CCCCeEEEecChHhhhHHH-HHHHHHhcCcEEEECCCc
Confidence 46788999999999999999999999998888877777778 8899999999999999984 589999999999988766
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+ +..+++.++++++|++.++|++++.|++.... ...+++++|.++.+ |.+.+|.++++.|
T Consensus 272 ~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~Y 344 (537)
T PRK13382 272 D-PEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNY 344 (537)
T ss_pred C-HHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecc
Confidence 5 79999999999999999999999999875422 23345567654333 4445676676665
No 30
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2e-36 Score=276.55 Aligned_cols=290 Identities=20% Similarity=0.333 Sum_probs=242.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++.+|+..++.+.++.+||+||.++ +.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|+++
T Consensus 10 ~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~~~ 88 (521)
T PRK06187 10 RILRHGARKHPDKEAVYFDGRRTTYAELDER-VNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINI 88 (521)
T ss_pred HHHHHHHHHCCCceEEEeCCceEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeccc
Confidence 5788999999998888888889999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---CCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
..+.+++..+++..++++++++... .+.+.++....+..+.++..++... ......+.++......... .
T Consensus 89 ~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 161 (521)
T PRK06187 89 RLKPEEIAYILNDAEDRVVLVDSEF-VPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFD------F 161 (521)
T ss_pred CCCHHHHHHHHHhcCCeEEEEcchH-HHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCC------C
Confidence 9999999999999999999999874 5667777777777777776655432 1344556666543321111 1
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.....+++++++|||||||.||+|.+||.++..........+++ ..+|++++..|++|.+++.. .+.++..|+++++.
T Consensus 162 ~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~-~~~~l~~G~~~v~~ 239 (521)
T PRK06187 162 PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL-SRDDVYLVIVPMFHVHAWGL-PYLALMAGAKQVIP 239 (521)
T ss_pred CCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCC-CCCCEEEEeCCchHHhhHHH-HHHHHHhCCEEEec
Confidence 13466889999999999999999999999999988888888888 99999999999999998876 45599999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.. .+..+++.++++++|++.++|+++..|.+.......+++++|.++.+ +...+|+++++.|
T Consensus 240 ~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~Y 313 (521)
T PRK06187 240 RRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGY 313 (521)
T ss_pred CCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheee
Confidence 887 47999999999999999999999999988776656677888876543 2223477776655
No 31
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=100.00 E-value=1.6e-36 Score=269.85 Aligned_cols=271 Identities=23% Similarity=0.306 Sum_probs=210.8
Q ss_pred HHHHHHhcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 5 LKLGLERYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 5 l~~~~~~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
++++++++||..++.+ .++.+||+|+.++ ++++|..|.++|+++||+|+++++|+.+++++++||+++|++++|++|.
T Consensus 1 f~~~a~~~pd~~a~~~~~~~~~Ty~~l~~~-v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~ 79 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDDEGRSLTYKQLYER-VRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS 79 (417)
T ss_dssp HHHHHHHSTTSEEEEETTTEEEEHHHHHHH-HHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred ChhHHhhCCCceEEEECCCEEEEHHHHHHH-HHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence 5789999999988888 8899999999996 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEE----eChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 84 NSPEACLHCLVTSDANICVV----EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++.+++.++++.++++++++ +... ...+.+..........++.++.... ...+.+...........
T Consensus 80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----- 149 (417)
T PF00501_consen 80 LSEDELRHILRQSGPKVIITSEAVDSEP-LKKLKSIFKQEDPSSSIIILDRDDL----PKKEALKSASLSDEPQS----- 149 (417)
T ss_dssp SSHHHHHHHHHHHTESEEEECHHHSCHH-HHHHHHHHTTSTTTEEEEEESHSSC----TTCHHHHHHHHCHCSHS-----
T ss_pred cccccccccccccceeEEEEeccccccc-cccchhhhccccccccccccccccc----ccccccccccccccccc-----
Confidence 99999999999999999997 3432 3444444444334444554443221 11111111110000000
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH--HhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII--QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
....++++++++|||||||.||+|.+||++++..+.... ...++ + |++++.+|++|.+|+...++.++..|++++
T Consensus 150 ~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~-~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (417)
T PF00501_consen 150 PEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGL-G--DRILSFLPLSHIFGLISALLAALFSGATLV 226 (417)
T ss_dssp TTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTT-T--TEEEESS-TTSHHHHHHHHHHHHHCTSEEE
T ss_pred CCCCccceeEeecccccccccccccccccccccccccccccccccc-C--ceEEeecccccccccccccccccccccccc
Confidence 000469999999999999999999999999999887754 22333 3 699999999999999777999999999999
Q ss_pred EeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh----hcccChHHHHHH
Q psy2835 238 FADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV----GKQTTGVKRWIA 289 (305)
Q Consensus 238 ~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----~~~~~sl~~~~~ 289 (305)
+.+.... ++.+++.+++++||++.++|+++..++++.+.. ..++++||.+++
T Consensus 227 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~ 284 (417)
T PF00501_consen 227 LPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVIS 284 (417)
T ss_dssp EESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEE
T ss_pred ccccccccccccchhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9998764 567899999999999999999999999844332 347888886544
No 32
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=9.6e-36 Score=280.07 Aligned_cols=283 Identities=20% Similarity=0.303 Sum_probs=218.5
Q ss_pred hHHHHHHHhcccceeeec---------------------------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Q psy2835 3 AFLKLGLERYHSVCIIGF---------------------------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCI 55 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---------------------------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i 55 (305)
++|++.++++|+..++.+ +++.+||+|+.++ ++++|+.|.++|+++||+|+|
T Consensus 73 ~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~-~~~lA~~L~~~Gv~~gd~V~i 151 (700)
T PTZ00216 73 QRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWER-IVNFGRGLAELGLTKGSNVAI 151 (700)
T ss_pred HHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHH-HHHHHHHHHHhCCCCCCEEEE
Confidence 678899999999776655 2468999999996 999999999999999999999
Q ss_pred EecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhcc--CCCccEEEEccCCCC
Q psy2835 56 IGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ--CPKLKAIVQYEGKPD 133 (305)
Q Consensus 56 ~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~ 133 (305)
+++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+. ...+.+.... .+.. .++.+++...
T Consensus 152 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~-~~~l~~~~~~~~~~~~-~ii~~~~~~~ 229 (700)
T PTZ00216 152 YEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKN-VPNLLRLMKSGGMPNT-TIIYLDSLPA 229 (700)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHH-HHHHHHhhhhccCCce-EEEEECCCcc
Confidence 9999999999999999999999999999999999999999999999998763 3444333221 2232 4555543221
Q ss_pred C-----CCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-----cc
Q psy2835 134 K-----PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-----KL 203 (305)
Q Consensus 134 ~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~ 203 (305)
. ....+|+++...+...... . .......++++++|+|||||||.||||++||+++.+++......+ .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~ 307 (700)
T PTZ00216 230 SVDTEGCRLVAWTDVVAKGHSAGSH-H-PLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPP 307 (700)
T ss_pred ccccCCceEEEHHHHHHhCCccccc-c-ccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCC
Confidence 1 2245677777654211110 0 001234679999999999999999999999999999887765543 23
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHH-------HhhhcCCcEEEechHHHHHHHHHHHH
Q psy2835 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLIN-------TLLEVRPHVFLAVPRVWEKIHEKLMA 276 (305)
Q Consensus 204 ~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-------~i~~~~vt~~~~~P~~~~~l~~~~~~ 276 (305)
.++|++++.+|++|+++... ....+..|+++++.+ +..+.+ .+++++||++.++|.+++.+.+....
T Consensus 308 -~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~ 381 (700)
T PTZ00216 308 -EEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEA 381 (700)
T ss_pred -CCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHH
Confidence 67899999999999998765 456677888877642 334444 68899999999999999999987766
Q ss_pred hhcccChHHHHHHHHHHHhh
Q psy2835 277 VGKQTTGVKRWIANYAKSTS 296 (305)
Q Consensus 277 ~~~~~~sl~~~~~~~a~~~g 296 (305)
...+.+.++..++.++...+
T Consensus 382 ~~~~~~~~~~~~~~~a~~~~ 401 (700)
T PTZ00216 382 KLPPVGSLKRRVFDHAYQSR 401 (700)
T ss_pred HHhccCHHHHHHHHHHHHHH
Confidence 66667788888887766544
No 33
>PTZ00297 pantothenate kinase; Provisional
Probab=100.00 E-value=1e-35 Score=289.67 Aligned_cols=281 Identities=14% Similarity=0.194 Sum_probs=227.8
Q ss_pred hHHHHHHHhcccceeeec---cC--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGF---NA--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---~~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
+++.+.++++|+..++.. .+ +++||+|+.++ ++++|.+|.++|+++||+|+|+++|+++|+++.+||+.+|+++
T Consensus 431 dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~-V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~ 509 (1452)
T PTZ00297 431 EMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDAR-ARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTT 509 (1452)
T ss_pred HHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 578888999999877753 12 57999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC--------C--CCcccHHHHHHhc
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD--------K--PGVISWDELMELG 147 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~--~~~~~~~~l~~~~ 147 (305)
+|+++ +.+++.+++++++++++|++.+. ++.+.++.. +.+++++++++... . ....+|+++...+
T Consensus 510 VPly~--t~~eL~yIL~~S~akvVfv~~~~-l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G 584 (1452)
T PTZ00297 510 LPLVG--KGSTMRTLIDEHKIKVVFADRNS-VAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG 584 (1452)
T ss_pred EeCCC--CHHHHHHHHHhcCCcEEEEchhH-HHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence 99975 46799999999999999998763 566655433 36888888864210 0 1245688888765
Q ss_pred cCCCCchhHHhhhccCCCceeEEEe---ccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHH
Q psy2835 148 RAAPDESLDRVLETIATNECCTLVY---TSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAA 221 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~---TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g 221 (305)
..... + ......++|++.|+| ||||||.||||++||+|++.++....... .. .++|++++.+|++|+++
T Consensus 585 ~~~~~-~---~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~-~~~D~~Ls~LPLaHI~e 659 (1452)
T PTZ00297 585 RLCPV-P---LKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSS-FKKHLMVHFTPFAMLFN 659 (1452)
T ss_pred cccCc-c---ccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCC-CCCCEEEEechHHHHHH
Confidence 32111 1 111336789999986 99999999999999999999998865532 34 67899999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhhhHH
Q psy2835 222 QTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQH 299 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g~~~ 299 (305)
.+. .+.++..|+++.+. ++..+++.|+++|||++.++|.+++++.+.........+.++..++.||.+.+.+.
T Consensus 660 r~~-~~~~l~~G~~I~~~----d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~ 732 (1452)
T PTZ00297 660 RVF-VLGLFAHGSAVATV----DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRL 732 (1452)
T ss_pred HHH-HHHHHHcCCEEEeC----CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 755 67788999998742 26899999999999999999999999988777666667889999999998876543
No 34
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.2e-36 Score=284.34 Aligned_cols=279 Identities=15% Similarity=0.189 Sum_probs=216.8
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+|++.++++|+..++.+.+ +.+||+||.++ +.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 71 ~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 71 NCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHRE-VCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 46777777889877776532 37999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccCCCccEEEEccCCCCC-----CCcccHHHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPDK-----PGVISWDEL 143 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l 143 (305)
++|+++.++.+++.+++++++++++|+++... .+.+.+....++..+.++.++..... .....++++
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHEL 229 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHH
Confidence 99999999999999999999999999976421 13333444445566666655432211 112335555
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQ 222 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~g~ 222 (305)
......... .....++++++|+|||||||.||||+++|.++..+... ....+++ .++|++++..|++|+.+.
T Consensus 230 ~~~~~~~~~------~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~ 302 (637)
T PRK00174 230 VAGASDECE------PEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY-KDGDVYWCTADVGWVTGH 302 (637)
T ss_pred HhhcCCCCC------ccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCC-CCCcEEEEcCCchHhhhh
Confidence 542211111 11346789999999999999999999999998765433 3344677 889999999999999998
Q ss_pred HHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 223 TVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 223 ~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
.+.++.++..|+++++.+. ..++..+++.++++++|++.++|++++.|++.... ...++++||.++.
T Consensus 303 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~ 374 (637)
T PRK00174 303 SYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGS 374 (637)
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEE
Confidence 7778999999999999753 22368999999999999999999999999875432 2345778876544
No 35
>PRK12582 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.3e-36 Score=281.54 Aligned_cols=281 Identities=18% Similarity=0.214 Sum_probs=211.2
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
++|+..++++|+..++.+.+ +.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 53 ~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v 131 (624)
T PRK12582 53 HLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRA-VDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVP 131 (624)
T ss_pred HHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCe
Confidence 56788889999977776532 58999999995 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCH-----HHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 77 AAGMYTTNSP-----EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 77 ~v~i~~~~~~-----~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
++|++|.++. +++.+++++++++++|+++.............. ..+ ++.++..........++++......
T Consensus 132 ~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~~~~~~~~~~~~~-- 207 (624)
T PRK12582 132 AAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLL-DVT-VVHVTGPGEGIASIAFADLAATPPT-- 207 (624)
T ss_pred EeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhc-Cce-EEEEcCCCcccccccHHHHhhcCCc--
Confidence 9999999885 899999999999999998753222222221111 222 3333332211223456665543211
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCC---CceEEEeCchhHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA---ALSVISFLPLSHIAAQTVDIYS 228 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~---~~~~l~~~pl~~~~g~~~~~~~ 228 (305)
...........++++++|+|||||||.||||++||+++..+.......... .. .+++++++|++|.+|+...++.
T Consensus 208 -~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~~~~~~~l~~lPl~h~~g~~~~~~~ 285 (624)
T PRK12582 208 -AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPR-EPDPPPPVSLDWMPWNHTMGGNANFNG 285 (624)
T ss_pred -chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccc-cCCCCCceEEEechHHHHHhHHHHHHH
Confidence 111111123457899999999999999999999999999887765554444 33 5899999999999998777888
Q ss_pred HHHhCcEEEEeCCccch---hHHHHHhhhcCCcEEEechHHHHHHHHHHHH----hhcccChHHHHHHH
Q psy2835 229 VMTVAATLWFADKNALK---GSLINTLLEVRPHVFLAVPRVWEKIHEKLMA----VGKQTTGVKRWIAN 290 (305)
Q Consensus 229 ~l~~G~~~v~~~~~~~~---~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~sl~~~~~~ 290 (305)
++..|+++++.+....+ ..+++.++++++|++.++|.++.+|++.... ...++++||.++++
T Consensus 286 ~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~g 354 (624)
T PRK12582 286 LLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYG 354 (624)
T ss_pred HHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEec
Confidence 99999999997643322 3567778999999999999999999875422 23456788877655
No 36
>PRK08315 AMP-binding domain protein; Validated
Probab=100.00 E-value=3e-36 Score=277.81 Aligned_cols=285 Identities=22% Similarity=0.319 Sum_probs=227.2
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+ .++.+||+||.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 20 ~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 20 QLLDRTAARYPDREALVYRDQGLRWTYREFNEE-VDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTI 98 (559)
T ss_pred HHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEec
Confidence 577888899999777655 5668999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccC-------------CCccEEEEccCCCCCCCcccHHHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQC-------------PKLKAIVQYEGKPDKPGVISWDEL 143 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~~~~l 143 (305)
+|..+.+++.++++.++++++++++... .+.+.+...++ +..+.++.++.. ...+...++++
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 177 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-KHPGMLNFDEL 177 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-CCcccccHHHH
Confidence 9999999999999999999999986521 12222222211 333444444332 12334566666
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
.....................+++++++|||||||.||+|.+||+++..++......+++ .++|+++...|++|.+|+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~ 256 (559)
T PRK08315 178 LALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL-TEEDRLCIPVPLYHCFGMV 256 (559)
T ss_pred HhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCC-CCCceEEEecCcHHHHHHH
Confidence 543321111111111123467889999999999999999999999999988888888888 9999999999999999998
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..++.++..|+++++......|..+++.++++++|++.++|+++..++........++++||.++++
T Consensus 257 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~ 323 (559)
T PRK08315 257 LGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMA 323 (559)
T ss_pred HHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEec
Confidence 8899999999999966555457999999999999999999999999888766566678889876554
No 37
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=100.00 E-value=6.4e-36 Score=274.35 Aligned_cols=291 Identities=19% Similarity=0.215 Sum_probs=226.9
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++.+||+||.++ +.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++
T Consensus 25 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl~~ 103 (542)
T PRK06155 25 AMLARQAERYPDRPLLVFGGTRWTYAEAARA-AAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINT 103 (542)
T ss_pred HHHHHHHHHCCCCeEEEeCCccccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEecc
Confidence 5789999999998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.+. ...+.+........+.++.++..........+........ .... .....
T Consensus 104 ~~~~~~l~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~ 177 (542)
T PRK06155 104 ALRGPQLEHILRNSGARLLVVEAAL-LAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPL-DAPA----PAAAV 177 (542)
T ss_pred ccCHHHHHHHHHhcCceEEEEChhh-HHHHHHhcccccCcceEEEecCccccccccccchhhhccc-CCCC----CCCCC
Confidence 9999999999999999999998763 4555444333333445554443221000011111000000 0000 01133
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||+|+++|.++..........+++ .+++++++.+|++|..++.. ++.++..|+++++.+..
T Consensus 178 ~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~ 255 (542)
T PRK06155 178 QPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEI-GADDVLYTTLPLFHTNALNA-FFQALLAGATYVLEPRF 255 (542)
T ss_pred CCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCC-CCCCEEEEecCHHHHHHHHH-HHHHHHcCceEEeeCCC
Confidence 56899999999999999999999999999887777777888 89999999999999998765 79999999999998876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH---------HHHHHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW---------IANYAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~---------~~~~a~~~g~~~~~~~ 303 (305)
. +..+++.++++++|++.++|+++..|.+.......+.+++|.+ .-.+...+|+++++.|
T Consensus 256 ~-~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~v~~~Y 324 (542)
T PRK06155 256 S-ASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGVPAALHAAFRERFGVDLLDGY 324 (542)
T ss_pred C-HHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcCCCHHHHHHHHHHcCCCEEeee
Confidence 5 7999999999999999999999999887654444445555432 2234445677777665
No 38
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.9e-36 Score=276.62 Aligned_cols=294 Identities=15% Similarity=0.144 Sum_probs=231.3
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+++++.++++|++.++.. .++.+||+||.++ +.++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 26 ~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~ 104 (538)
T TIGR03208 26 DHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCR-VDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAV 104 (538)
T ss_pred HHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEE
Confidence 567888899999777654 2368999999995 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
++|+++..+.+++.++++.++++++++++... ...+.++....+..+.++..+.. +...++++.........
T Consensus 105 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 180 (538)
T TIGR03208 105 LNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD----GDDSFDRVLMTPERDDT 180 (538)
T ss_pred EeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC----CCcCHHHHhhccccccc
Confidence 99999999999999999999999999987531 22333344445555566655432 22334444432110000
Q ss_pred chh--HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 153 ESL--DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 153 ~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
... ........++++++++|||||||.||+|+++|+++...+......+++ ..+|++++.+|++|..|++..++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l 259 (538)
T TIGR03208 181 PDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLEL-GGGDVILMASPMAHQTGFMYGLMMPL 259 (538)
T ss_pred cccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCC-CCCCeEEEeCCchhHHHHHHHHHHHH
Confidence 000 000113467899999999999999999999999999998888888888 89999999999999999888899999
Q ss_pred HhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHH
Q psy2835 231 TVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQH 299 (305)
Q Consensus 231 ~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~ 299 (305)
..|+++++.+..+ +..+++.++++++|++.++|+++..+.........+++++|.++++ +.+.+|.++
T Consensus 260 ~~g~~~~~~~~~~-~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~ 338 (538)
T TIGR03208 260 ILNATAVLQDIWN-PARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALI 338 (538)
T ss_pred HcCCEEEecCccC-HHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCCeE
Confidence 9999999987665 7999999999999999999999999887655455567788766543 233456666
Q ss_pred Hhhh
Q psy2835 300 YMAY 303 (305)
Q Consensus 300 ~~~~ 303 (305)
++.|
T Consensus 339 ~~~Y 342 (538)
T TIGR03208 339 VSAW 342 (538)
T ss_pred Eeee
Confidence 6655
No 39
>PRK06839 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.6e-36 Score=274.38 Aligned_cols=266 Identities=15% Similarity=0.169 Sum_probs=218.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+.+++.++++|++.++.++++.+||+|+.++ ++++|+.|.+ .|+.+||+|+++++|+++++++++||+++|++++|++
T Consensus 6 ~~~~~~a~~~p~~~a~~~~~~~~ty~~l~~~-~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~~~ 84 (496)
T PRK06839 6 YWIEKRAYLHPDRIAIITEEEEMTYKQLHEY-VSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLN 84 (496)
T ss_pred HHHHHHHHHCCCCeEEEECCceEEHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecC
Confidence 5678889999998888888999999999996 9999999985 7999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+..+.+++..++++.+++.++++++. ...+.++.... ....++.+. +++++....... ...
T Consensus 85 ~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~--------~~~ 145 (496)
T PRK06839 85 IRLTENELIFQLKDSGTTVLFVEKTF-QNMALSMQKVS-YVQRVISIT---------SLKEIEDRKIDN--------FVE 145 (496)
T ss_pred cccCHHHHHHHHHhcCceEEEEcHHH-HHHHHHhhhcc-CcceEEEec---------chHhhhccCCCC--------CCC
Confidence 99999999999999999999998763 34444433322 122233222 122222211110 013
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||+|.++|+++..........+++ ..+|++++.+|++|.+|+...++.++..|+++++.+.
T Consensus 146 ~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 224 (496)
T PRK06839 146 KNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDL-TMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK 224 (496)
T ss_pred CCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCC-CCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC
Confidence 356899999999999999999999999998777666667778 8999999999999999988777899999999998876
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.. +..+++.++++++|++.++|.+++.+++.......+++++|.++.+
T Consensus 225 ~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 272 (496)
T PRK06839 225 FE-PTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNG 272 (496)
T ss_pred CC-HHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEEC
Confidence 65 7999999999999999999999999998766656677888765443
No 40
>KOG1179|consensus
Probab=100.00 E-value=9.8e-37 Score=261.38 Aligned_cols=268 Identities=20% Similarity=0.173 Sum_probs=226.1
Q ss_pred hHHHHHHHhcccceeeeccC--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.++++|+++++.+.+ +.+||+|+.++ ++++|+.|...|++.||.|+++++|.++|+.+.+|++++|++...|
T Consensus 81 ~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~-s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~i 159 (649)
T KOG1179|consen 81 ELFLSQVRRQPDKPAIIYEGPFQSLTFAELDAR-SNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAFI 159 (649)
T ss_pred HHHHHHHHhCCCccEEEEeCCCceeeHHHHHHH-HHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeeee
Confidence 56788899999988888866 69999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCc-cEEEEccCCCCCCCcccHHHHHHhccCCCCchhH-Hh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL-KAIVQYEGKPDKPGVISWDELMELGRAAPDESLD-RV 158 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 158 (305)
|+++..+.+.|.++-+++++++++.+. .+.+.++.+..... -.+...+... .....+++....+..+..+.+ ..
T Consensus 160 NtNlR~~~LlHsi~~s~aralv~~~el-~~~~~e~~~~l~~~~i~~~~~~~~~---~~~g~~~L~~~l~~~~~~~vp~~~ 235 (649)
T KOG1179|consen 160 NTNLRGEPLLHSITVSGARALVVGPEL-LNALEEILPLLIKNGIHVFSLGPTS---VPDGIESLLAKLSAAPKHPVPVST 235 (649)
T ss_pred ccccccchhhhhhhhcCceEEEECHHH-HHHHHhcchhhhhccceEEecCCCC---CCchHHHHHHhhcccccCCCCccc
Confidence 999999999999999999999999884 56777764444333 2223222222 223344555554444444433 22
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.......++++.+|||||||.||+.++||.............+++ +++|+++..+|+||..|.+.++..++..|+|+|+
T Consensus 236 ~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~-~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~Vl 314 (649)
T KOG1179|consen 236 RSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGM-TADDVVYTTLPLYHSAAGILGIGGCLLHGATVVL 314 (649)
T ss_pred CCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CccceEEEcchhHHHHHHHHHHHHHHhcCceEEE
Confidence 334567899999999999999999999999999988888889999 9999999999999999999999999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 277 (305)
-+++. ...||+...+|+||++.-.-.+.+.|++.+..+
T Consensus 315 rkKFS-AS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~ 352 (649)
T KOG1179|consen 315 RKKFS-ASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSP 352 (649)
T ss_pred ecccc-hhhhHHHHHHhCCeeeehHHHHHHHHHcCCCCh
Confidence 99998 599999999999999999999999999865443
No 41
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.6e-36 Score=276.87 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=231.5
Q ss_pred hhHHHHHHHhcccceeeecc--C--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 2 KAFLKLGLERYHSVCIIGFN--A--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~--~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
.++|++.+.++|+..++.+. + +.+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~ 91 (539)
T PRK07008 13 SSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERR-AKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVC 91 (539)
T ss_pred HHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEE
Confidence 47899999999998887641 2 57999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC----CCcccHHHHHHhccCCCCc
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----PGVISWDELMELGRAAPDE 153 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 153 (305)
+|++|..+.+++..+++.+++++++++.++ .+.+.++.......+.++...+.... ....+++++..........
T Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (539)
T PRK07008 92 HTINPRLFPEQIAYIVNHAEDRYVLFDLTF-LPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDYDW 170 (539)
T ss_pred eecccccCHHHHHHHHhccCCcEEEEcchh-HHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCcCc
Confidence 999999999999999999999999998874 45566665556666665544432211 2245566665432211110
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH--HHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA--CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
....++++++++|||||||.||+|++||.++..+.. .....+++ ..+|++++..|++|.+++.. .+.++.
T Consensus 171 ------~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~-~~~~l~ 242 (539)
T PRK07008 171 ------PRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGL-SARDAVLPVVPMFHVNAWGL-PYSAPL 242 (539)
T ss_pred ------ccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCC-CCCceEEecCchHHhhhHHH-HHHHHh
Confidence 134568899999999999999999999999875432 23345667 88999999999999887655 578889
Q ss_pred hCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHH
Q psy2835 232 VAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHY 300 (305)
Q Consensus 232 ~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~ 300 (305)
.|+++++.+...++..+++.+++++||++.++|+++..++++......+++++|.++++ +....|++++
T Consensus 243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~ 322 (539)
T PRK07008 243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVI 322 (539)
T ss_pred cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence 99999998654457899999999999999999999999998776666678888866543 3445677777
Q ss_pred hhh
Q psy2835 301 MAY 303 (305)
Q Consensus 301 ~~~ 303 (305)
+.|
T Consensus 323 ~~Y 325 (539)
T PRK07008 323 HAW 325 (539)
T ss_pred ccc
Confidence 766
No 42
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=100.00 E-value=1e-36 Score=284.23 Aligned_cols=285 Identities=13% Similarity=0.142 Sum_probs=206.4
Q ss_pred hhHHHHHHHh--cccceeeecc------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 2 KAFLKLGLER--YHSVCIIGFN------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 2 ~~~l~~~~~~--~~~~~~~~~~------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
..+|++.+++ .|+..++.+. .+++||+||.++ ++++|+.|+++|+++||+|+++++|+++++++++||+++
T Consensus 62 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~ 140 (647)
T PTZ00237 62 YNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEK-VCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARI 140 (647)
T ss_pred HHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 3566666543 5676666542 257999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCC-CccEEEEccCCC------------
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCP-KLKAIVQYEGKP------------ 132 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~-~~~~~i~~~~~~------------ 132 (305)
|++++|+++.++.+++.+++++++++++|+++.. ..+.+.+...... ...+++.+....
T Consensus 141 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 220 (647)
T PTZ00237 141 GATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIET 220 (647)
T ss_pred CcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccc
Confidence 9999999999999999999999999999997521 1223333322111 123444331110
Q ss_pred --CCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhH-HHHHHHHHHHhhccCCCCce
Q psy2835 133 --DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAACIIQYFKLESAALS 209 (305)
Q Consensus 133 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~ 209 (305)
..++...|++++.........+. .......++++++|+|||||||.||||+++|.+ +............. ..+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~-~~~d~ 298 (647)
T PTZ00237 221 IPTIPNTLSWYDEIKKIKENNQSPF-YEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEK-DIPTV 298 (647)
T ss_pred cCCCcccccHHHHHhhhccccCCCC-CCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCC-CCCcE
Confidence 00123446665543211000000 001234679999999999999999999999998 44433333444555 77899
Q ss_pred EEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc-c----hhHHHHHhhhcCCcEEEechHHHHHHHHHHH-----Hhhc
Q psy2835 210 VISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA-L----KGSLINTLLEVRPHVFLAVPRVWEKIHEKLM-----AVGK 279 (305)
Q Consensus 210 ~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~-~----~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~ 279 (305)
+++..|++|+.+.. .++.++..|+++++.+... . +..+++.+++++||++.++|++++.|.+... ....
T Consensus 299 ~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~ 377 (647)
T PTZ00237 299 VFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY 377 (647)
T ss_pred EEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccccccccc
Confidence 99999999986654 4889999999999986421 1 4789999999999999999999999987532 1345
Q ss_pred ccChHHHHHHH
Q psy2835 280 QTTGVKRWIAN 290 (305)
Q Consensus 280 ~~~sl~~~~~~ 290 (305)
++++||.++++
T Consensus 378 ~l~~Lr~i~~~ 388 (647)
T PTZ00237 378 DLSNLKEIWCG 388 (647)
T ss_pred CcchheEEEec
Confidence 68888876554
No 43
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=4.6e-36 Score=277.28 Aligned_cols=295 Identities=19% Similarity=0.266 Sum_probs=227.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 36 ~~~~~~~~~~p~~~a~~~~~~~~Ty~ql~~~-~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 114 (573)
T PRK05605 36 DLYDNAVARFGDRPALDFFGATTTYAELGKQ-VRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNP 114 (573)
T ss_pred HHHHHHHHHCCCCeEEEeCCCcccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCc
Confidence 5678888999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--------------------------CCCC
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--------------------------DKPG 136 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------------~~~~ 136 (305)
.++.+++.+++++.+++++|++++. ...+.++.... ..+.++.++... ...+
T Consensus 115 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (573)
T PRK05605 115 LYTAHELEHPFEDHGARVAIVWDKV-APTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPG 192 (573)
T ss_pred CCCHHHHHHHHhccCCcEEEechhh-HHHHHhhhhcc-ccceeEeeecccccccccccccccccccccccccccccCCCc
Confidence 9999999999999999999998763 34444433221 222232222100 0123
Q ss_pred cccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-cCCCCceEEEeCc
Q psy2835 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLP 215 (305)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~l~~~p 215 (305)
...|+++........... ........+++++++|||||||.||+|++||+++..++......+. +...++++++..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 270 (573)
T PRK05605 193 TVPWETLVDAAIGGDGSD--VSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALP 270 (573)
T ss_pred ceeHHHHhhccccccccc--cCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecC
Confidence 334555544321110000 0011345789999999999999999999999999887765443332 2145789999999
Q ss_pred hhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH----
Q psy2835 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY---- 291 (305)
Q Consensus 216 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~---- 291 (305)
++|.+|+...++.++..|+++++.+..+ +..+++.++++++|++.++|.+++.|.+.......++++||.++.++
T Consensus 271 ~~~~~g~~~~~~~~l~~g~~~~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~ 349 (573)
T PRK05605 271 MFHAYGLTLCLTLAVSIGGELVLLPAPD-IDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALP 349 (573)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCCCC-HHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCC
Confidence 9999998887888999999999988765 79999999999999999999999999987766666778887665542
Q ss_pred -------HHHhhhHHHhhh
Q psy2835 292 -------AKSTSLQHYMAY 303 (305)
Q Consensus 292 -------a~~~g~~~~~~~ 303 (305)
....|.++++.|
T Consensus 350 ~~~~~~~~~~~~~~i~~~Y 368 (573)
T PRK05605 350 VSTVELWEKLTGGLLVEGY 368 (573)
T ss_pred HHHHHHHHHHhCCCeeccc
Confidence 333566666655
No 44
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=100.00 E-value=6e-36 Score=272.76 Aligned_cols=291 Identities=18% Similarity=0.199 Sum_probs=232.2
Q ss_pred hhHHHHH-HHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 2 KAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 2 ~~~l~~~-~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
.+++.+. ++.+||..++.+.++.+||+|+.++ ++++|.+|.+.|+++|++|+++++|+.+++++++||+++|++++|+
T Consensus 7 ~~~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~-~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 7 EDLLDRNVVEGRGGKTAFIDDISSLSYGELEAQ-VRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred HHHHHHHHhcccCCceEEEeCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeec
Confidence 5667766 5668998888788899999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++.++.+++.++++.+++++++++.+. .+.+.+.....+..+.++..+... .....+.++......... ..
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~ 156 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGEL-LPVIKAALGKSPHLEHRVVVGRPE--AGEVQLAELLATESEQFK------PA 156 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhh-HHHHHHHHhcCCCccEEEEeCCCC--cccccHHHHhhcCCCccC------CC
Confidence 999999999999999999999998773 466666666666666666554422 222344444432211110 01
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHH-HHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC-IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++++++++|||||||.||+|.+||+++...+.. ....+++ +++|+++...|++|.+++...++.++..|+++++.
T Consensus 157 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 235 (508)
T TIGR02262 157 ATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGI-REDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM 235 (508)
T ss_pred CCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCC-CCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEe
Confidence 345789999999999999999999999999987765 4456677 89999999999999999877788899999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH-----------HHHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA-----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~-----------~~a~~~g~~~~~~~ 303 (305)
+....+..+++.+++++||++.++|.++..++++.........++|.++. .|...+|+++++.|
T Consensus 236 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~Y 310 (508)
T TIGR02262 236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGI 310 (508)
T ss_pred CCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCc
Confidence 76555799999999999999999999998887654333334556664432 24445678888776
No 45
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=100.00 E-value=2.6e-36 Score=276.22 Aligned_cols=289 Identities=13% Similarity=0.131 Sum_probs=228.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++++||+|+.++ ++++|..|.+.|+++||+|+++++|+.+++++++||+++|++++++++
T Consensus 27 ~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~ 105 (527)
T TIGR02275 27 DILRDQAARYPDAIAIICGNRQWSYRELDQR-ADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLALF 105 (527)
T ss_pred HHHHHHHHHCCCceEEEeCCceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEecccc
Confidence 5678888999998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHH----HHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..+.++++++++..+++.+++++.... +....+....+..+.++...... .................
T Consensus 106 ~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------ 176 (527)
T TIGR02275 106 SHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTR---VEAELFLWLESPAEPVK------ 176 (527)
T ss_pred ccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCC---CcchhhHHhhCcCcccc------
Confidence 999999999999999999999865211 12222333344444444332211 01111111111110000
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++++|||||||.||+|++||+++..++......+.+ +.+|++++.+|++|.+++.. .++.++..|++++
T Consensus 177 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v 255 (527)
T TIGR02275 177 FPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWL-TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVV 255 (527)
T ss_pred CCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCC-CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEE
Confidence 113467899999999999999999999999999988887778888 89999999999999998765 5788999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH-----------HHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY-----------AKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~-----------a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++.++|+++..+.+..+....+++++|.+++++ ....|.++++.|
T Consensus 256 ~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~Y 331 (527)
T TIGR02275 256 LAPDPS-PTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVF 331 (527)
T ss_pred ECCCCC-HHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeee
Confidence 987665 78999999999999999999999999887766666778887665542 233566666655
No 46
>PRK06164 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.3e-36 Score=276.45 Aligned_cols=294 Identities=16% Similarity=0.138 Sum_probs=225.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|...++++|+..++...++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 14 ~~l~~~a~~~p~~~a~~~~~~~~Ty~~L~~~-~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~~ 92 (540)
T PRK06164 14 SLLDAHARARPDAVALIDEDRPLSRAELRAL-VDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNT 92 (540)
T ss_pred HHHHHHHHhCCCCeEEecCCCcccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecCC
Confidence 6788889999998888788899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhc-cCCCccEEEEccCCCCC-CCc--ccHHHHHHhccCCCCch
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKA-QCPKLKAIVQYEGKPDK-PGV--ISWDELMELGRAAPDES 154 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~ 154 (305)
..+.+++.++++.++++++++++++. .+.+..... ..+..+.++.++..... +.. ..+..+...........
T Consensus 93 ~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (540)
T PRK06164 93 RYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAA 172 (540)
T ss_pred CCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccccccCCccc
Confidence 99999999999999999999987631 111222111 12334444444311110 000 00111111000000000
Q ss_pred hHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCc
Q psy2835 155 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA 234 (305)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 234 (305)
........+++++++|||||||.||+|++||+++..++......+++ .+++++++.+|++|.+|+. .++.++..|+
T Consensus 173 --~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~ 248 (540)
T PRK06164 173 --AGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGY-DPGAVLLAALPFCGVFGFS-TLLGALAGGA 248 (540)
T ss_pred --ccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCCEEEEcCCchhHHHHH-HHHHHHhcCc
Confidence 00012346899999999999999999999999999998888888888 8999999999999999985 5899999999
Q ss_pred EEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH-----------HHHHHhhhHHHhhh
Q psy2835 235 TLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA-----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 235 ~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~-----------~~a~~~g~~~~~~~ 303 (305)
++++.+.++ +..+++.++++++|+++++|+++..+.+. .....+++++|.+.+ .|..+.|+++++.|
T Consensus 249 ~~~~~~~~~-~~~~~~~l~~~~~t~~~~~p~~l~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 326 (540)
T PRK06164 249 PLVCEPVFD-AARTARALRRHRVTHTFGNDEMLRRILDT-AGERADFPSARLFGFASFAPALGELAALARARGVPLTGLY 326 (540)
T ss_pred eEEecCCCC-HHHHHHHHHHhCCeeecCCHHHHHHHHHh-hcccCCCcceeeeeeccCCcchHHHHHHHhhcCCceecce
Confidence 999988766 68999999999999999999999999886 334556777775433 23344466666655
No 47
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=100.00 E-value=5.5e-36 Score=273.46 Aligned_cols=274 Identities=21% Similarity=0.281 Sum_probs=224.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++.+||+||.++ +.+++++|.+.|+.+||+|+++++|+.+++++++||+.+|++++|+++
T Consensus 4 ~~~~~~~~~~p~~~a~~~~~~~~ty~~l~~~-v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 82 (515)
T TIGR03098 4 HLLEDAAARLPDATALVHHDRTLTYAALSER-VLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82 (515)
T ss_pred HHHHHHHHHCCCCeEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCC
Confidence 5788899999998888788889999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC----CCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----PGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..+.+++..+++..++++++++.+. .+.+......++....++.+++.... .....|+++....... .
T Consensus 83 ~~~~~~~~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 154 (515)
T TIGR03098 83 LLKAEQVAHILADCNVRLLVTSSER-LDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD-------P 154 (515)
T ss_pred CCCHHHHHHHHHcCCCeEEEEccch-hhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc-------c
Confidence 9999999999999999999998763 45555555555555566655543211 1223455554322211 0
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
......+++++++|||||||.||+|.+||+++...+......+++ ..+|++++.+|++|.+|+.. ++.++..|+++++
T Consensus 155 ~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~ 232 (515)
T TIGR03098 155 PHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLEN-RPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVL 232 (515)
T ss_pred cCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCC-CcccEEEEECchhhHhHHHH-HHHHHHcCCEEEE
Confidence 112356889999999999999999999999999988888788888 89999999999999999865 8999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
.+... +..+++.++++++|++.++|+++..|.+.. ....+++++|.++.
T Consensus 233 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l~~~~~ 281 (515)
T TIGR03098 233 HDYLL-PRDVLKALEKHGITGLAAVPPLWAQLAQLD-WPESAAPSLRYLTN 281 (515)
T ss_pred cCCCC-HHHHHHHHHHcCCceEecChHHHHHHHhcc-cCCCCccceEEEEe
Confidence 87765 799999999999999999999999987642 12234566665544
No 48
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=5.3e-36 Score=276.94 Aligned_cols=292 Identities=16% Similarity=0.272 Sum_probs=230.2
Q ss_pred hhHHHHHHHhcccceeeecc---CCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 2 KAFLKLGLERYHSVCIIGFN---APEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~---~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
.++|+..+..+|+..++.++ ++.+||+|+.++ +.++|.+|.+ .|+++||+|+++++|+.+++++++||+++|+++
T Consensus 13 ~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~-~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~ 91 (576)
T PRK05620 13 TRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGAR-AAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVF 91 (576)
T ss_pred HHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEE
Confidence 36889999999998777653 368999999996 9999999986 799999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---------CCCcccHHHHHHhcc
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---------KPGVISWDELMELGR 148 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~l~~~~~ 148 (305)
++++|..+.+++.++++..+++++++++.. .+.+.+....++..+.++..+.... .....+|+++.....
T Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (576)
T PRK05620 92 NPLNKQLMNDQIVHIINHAEDEVIVADPRL-AEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRS 170 (576)
T ss_pred eecccccCHHHHHHHHhccCCcEEEEChhh-HHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCC
Confidence 999999999999999999999999998774 4666666666666666655442211 122345777765332
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHH--HHhhccCCCCceEEEeCchhHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDI 226 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~g~~~~~ 226 (305)
..... ....++++++++|||||||.||+|.+||+++....... ...+++ ..++++++.+|++|.+|... .
T Consensus 171 ~~~~~------~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g~~~-~ 242 (576)
T PRK05620 171 TVYDW------PELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAV-THGESFLCCVPIYHVLSWGV-P 242 (576)
T ss_pred CcCCC------CCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCC-CCCCeEEEeCChHHhhhhHH-H
Confidence 11111 13467899999999999999999999999987654432 334667 88999999999999998765 7
Q ss_pred HHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHh
Q psy2835 227 YSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKST 295 (305)
Q Consensus 227 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~ 295 (305)
+.++..|+++++.+....+..+++.++++++|++.++|+++..++.+......+..++|.++++ +...+
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~ 322 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY 322 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh
Confidence 8889999999998755558999999999999999999999999887654443444566644433 34446
Q ss_pred hhHHHhhh
Q psy2835 296 SLQHYMAY 303 (305)
Q Consensus 296 g~~~~~~~ 303 (305)
|+++++.|
T Consensus 323 ~~~~~~~Y 330 (576)
T PRK05620 323 GVDVVHVW 330 (576)
T ss_pred CCceeeec
Confidence 77777665
No 49
>PRK08316 acyl-CoA synthetase; Validated
Probab=100.00 E-value=6.8e-36 Score=273.30 Aligned_cols=277 Identities=22% Similarity=0.252 Sum_probs=225.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|.+.++++|+..++.+.++.+||+||.++ +.++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 15 ~~l~~~a~~~~~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~~ 93 (523)
T PRK08316 15 DILRRSARRYPDKTALVFGDRSWTYAELDAA-VNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNF 93 (523)
T ss_pred HHHHHHHHHCCCCeEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEeccc
Confidence 6788889999998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCC---CCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK---PDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
..+.+++.++++..++++++++.+. ...+.+........ .+...... ........++++..........
T Consensus 94 ~~~~~~i~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 165 (523)
T PRK08316 94 MLTGEELAYILDHSGARAFLVDPAL-APTAEAALALLPVD-TLILSLVLGGREAPGGWLDFADWAEAGSVAEPD------ 165 (523)
T ss_pred ccCHHHHHHHHHhCCCCEEEEccch-HHHHHHHhhhcCcc-ceeeeecccccccccchhhHHHHHhcCCCccCc------
Confidence 9999999999999999999999874 34554443332211 11111110 0112334455444332211111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.....+++++++|||||||.||+|.+||+++..........+++ ..+|++++.+|++|..|+...++.++..|+++++.
T Consensus 166 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~ 244 (523)
T PRK08316 166 VELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDM-SADDIPLHALPLYHCAQLDVFLGPYLYVGATNVIL 244 (523)
T ss_pred cCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCC-CCCceEEEccCCchhhhHHHHHHHHHhcCceEEEe
Confidence 23467899999999999999999999999999988877778888 99999999999999999877677789999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+... +..+++.++++++|++.++|.++..+.++......+++++|.++++
T Consensus 245 ~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~g 294 (523)
T PRK08316 245 DAPD-PELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYG 294 (523)
T ss_pred cCCC-HHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEc
Confidence 7765 7999999999999999999999999988766666678888866554
No 50
>PRK12583 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1e-35 Score=274.32 Aligned_cols=285 Identities=19% Similarity=0.272 Sum_probs=224.5
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+ .++.+||+||.++ ++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++++
T Consensus 22 ~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l 100 (558)
T PRK12583 22 DAFDATVARFPDREALVVRHQALRYTWRQLADA-VDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNI 100 (558)
T ss_pred HHHHHHHHHCCCCeEEEecCCCcEecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEec
Confidence 578888999999777755 4578999999995 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhc-------------cCCCccEEEEccCCCCCCCcccHHHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKA-------------QCPKLKAIVQYEGKPDKPGVISWDEL 143 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~l 143 (305)
++..+.+++.+++++.+++++++++... ...+.+... ..+....++.+... ...+...|+++
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 179 (558)
T PRK12583 101 NPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-PPPGFLAWHEL 179 (558)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC-CCccccchHhh
Confidence 9999999999999999999999976421 111222111 12233344433322 12334456555
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
....................++++++++|||||||.||+|.+||.++..++......+++ .++|++++..|++|.+|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~ 258 (558)
T PRK12583 180 QARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGL-TEHDRLCVPVPLYHCFGMV 258 (558)
T ss_pred hhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCC-CCCCeEEEecCchhhhhHH
Confidence 443322111111111123457889999999999999999999999999988888888888 8999999999999999999
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..++.++..|+++++......+..+++.++++++|++.++|+++..++++......+++++|.++++
T Consensus 259 ~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~ 325 (558)
T PRK12583 259 LANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMA 325 (558)
T ss_pred HHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEec
Confidence 9899999999999987655557899999999999999999999998887665555678888876554
No 51
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=100.00 E-value=1.9e-36 Score=286.10 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=215.9
Q ss_pred hHHHHHHHhccc-ceeeecc-CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHS-VCIIGFN-APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~-~~~~~~~-~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++...++++|+ ..++.+. .+.+||+|+.++ ++++|++|.+. +++||+|+++++|+++++++++||+++|++++|+
T Consensus 208 ~~l~~~~~~~p~~~~a~~~~~~~~~Ty~el~~~-~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl 285 (718)
T PRK08043 208 EALLSAQYRYGAGKPCIEDVNFTPDSYRKLLKK-TLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRRRIPAMM 285 (718)
T ss_pred HHHHHHHHHhCCCCcceEcCCCCcccHHHHHHH-HHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcCCccccc
Confidence 567888889987 5666553 478999999996 99999999987 5999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHH--HHHhccCCCccEEEEccCCCCCCCcccHHHHH--HhccCCCCchhH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKI--LKVKAQCPKLKAIVQYEGKPDKPGVISWDELM--ELGRAAPDESLD 156 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 156 (305)
++.++.+++.++++++++++++++.+. .+.. ......++....+ .+++.. ....+.+.. ......+..
T Consensus 286 ~~~~~~~~l~~~l~~s~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~i-~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 357 (718)
T PRK08043 286 NYTAGVKGLTSAITAAEIKTIFTSRQF-LDKGKLWHLPEQLTQVRWV-YLEDLK---DDVTTADKLWIFAHLLMPRL--- 357 (718)
T ss_pred ccCcCHHHHHHHHHHcCCcEEEEcHHH-HhhccCCChhhhhccccEE-Ehhhhh---hhcchhHHHHHHHHHhCCcc---
Confidence 999999999999999999999998663 2211 0111112222222 222211 011111100 000000000
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
......++++++++|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+...++.++..|+++
T Consensus 358 -~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~v 435 (718)
T PRK08043 358 -AQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADF-TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEV 435 (718)
T ss_pred -ccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCC-CccCeEEEcCcchhhhhhHHHHHHHHHcCCEE
Confidence 0012356899999999999999999999999999988887777788 89999999999999999888889999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
++.+....+..+++.++++++|++.++|+++..+.+.. ...++++||.++++ +...+|+++++.|
T Consensus 436 v~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~Y 511 (718)
T PRK08043 436 FLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGY 511 (718)
T ss_pred EEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcCCCeeccc
Confidence 99876444577889999999999999999998876532 23456777765543 3334677777766
No 52
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=100.00 E-value=1.7e-35 Score=270.40 Aligned_cols=292 Identities=16% Similarity=0.222 Sum_probs=223.3
Q ss_pred hHHHHHHHhcccceeeeccC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGFNA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++++..++++|++.++.+.+ +.+||+||.++ ++++|..|.++|+++||+|+++++|+.+++++++||+++|+++
T Consensus 11 ~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~-v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~ 89 (517)
T PRK08008 11 QMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEE-INRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89 (517)
T ss_pred HHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence 67888999999988876643 68999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhcc-CCCccEEEEccCCC-CCCCcccHHHHHHhccCCCCchh
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQ-CPKLKAIVQYEGKP-DKPGVISWDELMELGRAAPDESL 155 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 155 (305)
+++++..+.+++.+++++.+++.++++.+. ...+.++... ....+.++..+... .......++++..........
T Consensus 90 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 166 (517)
T PRK08008 90 VPINARLLREESAWILQNSQASLLVTSAQF-YPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLCY-- 166 (517)
T ss_pred EEcCcccCHHHHHHHHHhcCceEEEEecch-hHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCccccc--
Confidence 999999999999999999999999999874 4555554332 23344455443321 112334455544322111110
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
.....++++++|+|||||||.||+|.+||.++............+ ..++++++.+|++|..+....++.++..|++
T Consensus 167 ---~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~ 242 (517)
T PRK08008 167 ---APPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCAL-RDDDVYLTVMPAFHIDCQCTAAMAAFSAGAT 242 (517)
T ss_pred ---cCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCC-CCCCeEEEecCcHHHHHHHHHHHHHHhcCcE
Confidence 113456899999999999999999999999998654433333456 7899999999999998888888999999999
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH----------HHHHHHhhhHHHhhh
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI----------ANYAKSTSLQHYMAY 303 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~----------~~~a~~~g~~~~~~~ 303 (305)
+++.+... +..+++.++++++|++.++|++++.+............+++.++ -.+.+..|+++++.|
T Consensus 243 ~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 319 (517)
T PRK08008 243 FVLLEKYS-ARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSY 319 (517)
T ss_pred EEEccccC-HHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEecCCCHHHHHHHHHHhCCeEEeec
Confidence 99998766 78999999999999999999999988764332222233444332 223444566666655
No 53
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-37 Score=253.10 Aligned_cols=281 Identities=13% Similarity=0.094 Sum_probs=241.8
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.++|...++++||+.++.+.++.+||+||.++ ++++|..|+++|+++||+|.+.++|..+|++++||++++|+.+|.--
T Consensus 31 ~d~L~~~A~~~pdriAv~d~~~~~sY~eLdqr-~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlAL 109 (542)
T COG1021 31 TDILTDHAARYPDRIAVIDGERRLSYAELDQR-ADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLAL 109 (542)
T ss_pred HHHHHHHHhhcCCceEEecCcccccHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhcc
Confidence 47899999999999999899999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChH----HHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDK----QLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
|+-...|+....+.+.++.+|.+... ....+.++....+.++++++.++... ....+..+..........
T Consensus 110 psHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~--~~~~~~~~~~~a~~~~~a---- 183 (542)
T COG1021 110 PSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEH--PSVLEAALCHPAGLFTPA---- 183 (542)
T ss_pred chhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCC--cchhhhhhhCccccCCcC----
Confidence 99999999999999999999997632 34666778888999999997754321 111122222222211111
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEE
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATL 236 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~ 236 (305)
.+..++++++...+.||||+||.+..||.....++....+..++ +..+++||.+|..|-+.+.+ +++..++.|+++
T Consensus 184 --~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~-~~~tvyL~~LP~AHNfplssPG~LGv~~agG~V 260 (542)
T COG1021 184 --PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGF-DQQTVYLCALPAAHNFPLSSPGALGVFLAGGTV 260 (542)
T ss_pred --CCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCc-CccceEEEecccccCCCCCCcchhheeeeccEE
Confidence 24567889999999999999999999999999999999999999 99999999999999887654 688999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAK 293 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~ 293 (305)
|+.+... |+..+..|++++||++.++|.+...|+.+.+....+++|||.+=.++|+
T Consensus 261 Vla~~ps-p~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGar 316 (542)
T COG1021 261 VLAPDPS-PELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGAR 316 (542)
T ss_pred EECCCCC-HHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcc
Confidence 9998887 7999999999999999999999999999999999999999977666543
No 54
>PLN02246 4-coumarate--CoA ligase
Probab=100.00 E-value=1.1e-35 Score=272.69 Aligned_cols=274 Identities=18% Similarity=0.261 Sum_probs=217.7
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++...+++.|+..++.+. ++++||+||.++ ++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|+
T Consensus 27 ~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~-~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l 105 (537)
T PLN02246 27 DYCFERLSEFSDRPCLIDGATGRVYTYADVELL-SRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTA 105 (537)
T ss_pred HHHHHHHHhCCCCeEEEecCCCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecC
Confidence 4667777788887776553 478999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++..+.+++..+++..++++++++... .+.+.+.... +. ..++.++... .....+.++......... ..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~-~~-~~~i~~~~~~--~~~~~~~~~~~~~~~~~~------~~ 174 (537)
T PLN02246 106 NPFYTPAEIAKQAKASGAKLIITQSCY-VDKLKGLAED-DG-VTVVTIDDPP--EGCLHFSELTQADENELP------EV 174 (537)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEccch-HHHHHHHhhc-CC-ceEEEeCCCC--CCceeHHHHhcCCCCCCC------CC
Confidence 999999999999999999999998763 3444444321 12 2344344321 223445554432111110 11
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
...++++++++|||||||.||+|++||+++......... .+++ ..+|++++..|++|.+++...++.++..|+++
T Consensus 175 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 253 (537)
T PLN02246 175 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYSLNSVLLCGLRVGAAI 253 (537)
T ss_pred CCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCC-CCCcEEEEeechHHHHHHHHHHHHHHhcCCEE
Confidence 345789999999999999999999999999987765433 4567 88999999999999999877788899999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.+... +..+++.++++++|++.++|+++..|.+.......+++++|.++.+
T Consensus 254 ~~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~g 306 (537)
T PLN02246 254 LIMPKFE-IGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSG 306 (537)
T ss_pred EEeCCCC-HHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEe
Confidence 9998765 6899999999999999999999999987665555567777766543
No 55
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=100.00 E-value=5.1e-36 Score=279.72 Aligned_cols=282 Identities=12% Similarity=0.099 Sum_probs=212.7
Q ss_pred hhHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 2 KAFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
..++++.++..|+..++.+ ..+.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 56 ~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 56 HNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDE-VNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 3567777777888777654 2357999999996 99999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccC-CCccEEEEccCCCCC-----CCcccHH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQC-PKLKAIVQYEGKPDK-----PGVISWD 141 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~-~~~~~~i~~~~~~~~-----~~~~~~~ 141 (305)
+++|+++.++.+++.+++++++++++|+++.. ..+.+.++.... +....++.++..... .....++
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 214 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA 214 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence 99999999999999999999999999997531 112333332222 233445544432110 1223455
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH-HHHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++.......... .....++++++|+|||||||.||||+++|.++..... .....+++ .++|++++..|++|..
T Consensus 215 ~~~~~~~~~~~~-----~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 288 (629)
T PRK10524 215 TLRAQHLGARVP-----VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGG-KAGETFFCASDIGWVV 288 (629)
T ss_pred HHHhcCCCCCCC-----ceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCC-CCCCEEEEcCCCCeec
Confidence 554332111110 0123578999999999999999999999999865443 34445677 8899999999999998
Q ss_pred HHHHHHHHHHHhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN 290 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~ 290 (305)
|..+.++.++..|+++++.+. ..++..+++.++++++|++.++|++++.|.+... ....++++||.++.+
T Consensus 289 ~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~ 363 (629)
T PRK10524 289 GHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLA 363 (629)
T ss_pred cchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEe
Confidence 877778999999999998864 2236889999999999999999999999876532 133467777765543
No 56
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.4e-35 Score=271.81 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=221.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++++.++++|+..++...++.+||+||.++ ++++|+.|.+ .|+++||+|+++++|++++++++|||+++|++++|++
T Consensus 28 ~~l~~~a~~~p~~~al~~~~~~~Ty~el~~~-~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l~ 106 (562)
T PRK05677 28 AVLKQSCQRFADKPAFSNLGKTLTYGELYKL-SGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTN 106 (562)
T ss_pred HHHHHHHHhCCCCeeEEECCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeecC
Confidence 5678888889998888788889999999996 9999999997 6999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC------------------------CCCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD------------------------KPGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------~~~~ 137 (305)
|..+.+++.++++++++++++++... ...+.++.... ..+.++..+.... .+..
T Consensus 107 ~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (562)
T PRK05677 107 PLYTAREMEHQFNDSGAKALVCLANM-AHLAEKVLPKT-GVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHLPQA 184 (562)
T ss_pred CCCCHHHHHHHHhccCceEEEEecch-hhhHHHhhhcc-CcceeEEecccccccchhhhhcccchhhccccccccCCccc
Confidence 99999999999999999999998763 34444333222 2333332211000 0111
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-C-CCceEEEeCc
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-S-AALSVISFLP 215 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~-~~~~~l~~~p 215 (305)
..+.+........... .....++++++|+|||||||.||+|+++|+++..+.......+... . ..+.+++.+|
T Consensus 185 ~~~~~~~~~~~~~~~~-----~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (562)
T PRK05677 185 VKFNDALAKGAGQPVT-----EANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLP 259 (562)
T ss_pred ccHHHHHhcCCCCCCC-----CCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCc
Confidence 2233333222111100 1134568999999999999999999999999988776655544320 3 3478899999
Q ss_pred hhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----
Q psy2835 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----- 290 (305)
Q Consensus 216 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----- 290 (305)
++|.+|+...++..+..|++.++.+....+..+++.++++++|+++++|+++..+.+.......+++++|.++.+
T Consensus 260 l~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~ 339 (562)
T PRK05677 260 LYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQ 339 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCC
Confidence 999999887788888999988877655557899999999999999999999999887544444456777766554
Q ss_pred ------HHHHhhhHHHhhh
Q psy2835 291 ------YAKSTSLQHYMAY 303 (305)
Q Consensus 291 ------~a~~~g~~~~~~~ 303 (305)
|....|+++++.|
T Consensus 340 ~~~~~~~~~~~~~~v~~~Y 358 (562)
T PRK05677 340 LATAERWKEVTGCAICEGY 358 (562)
T ss_pred HHHHHHHHHHcCCCeeccC
Confidence 3344577777766
No 57
>PRK07470 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.4e-35 Score=270.00 Aligned_cols=288 Identities=17% Similarity=0.211 Sum_probs=224.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++.+||+|+.++ +.++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++
T Consensus 11 ~~~~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~~ 89 (528)
T PRK07470 11 HFLRQAARRFPDRIALVWGDRSWTWREIDAR-VDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNF 89 (528)
T ss_pred HHHHHHHHHCCCceEEEECCccccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecCc
Confidence 5788889999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++..+++.+++++.. .+..............++.++... ...+++++.......... ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~ 160 (528)
T PRK07470 90 RQTPDEVAYLAEASGARAMICHADF-PEHAAAVRAASPDLTHVVAIGGAR---AGLDYEALVARHLGARVA-----NAAV 160 (528)
T ss_pred cCCHHHHHHHHHhcCceEEEEcchh-HHHHHHHHhhCCcCceEEEeCCCc---ccccHHHHHhcCCCCCCC-----cccC
Confidence 9999999999999999999999874 344444444445555556554432 234566665432111111 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh--ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
.++++++|+|||||||.||+|++||+++...+....... ++ ...|+++..+|++|.+++.. ++ .+..|++.++.+
T Consensus 161 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~ 237 (528)
T PRK07470 161 DHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGT-TEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLP 237 (528)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCC-CcccEEEEeccchhHHHHHH-HH-HHhcCceEEEec
Confidence 668999999999999999999999999976554432222 45 77899999999999988754 44 567777777665
Q ss_pred -CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHH-----------HHHhhhHHHhhh
Q psy2835 241 -KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANY-----------AKSTSLQHYMAY 303 (305)
Q Consensus 241 -~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~-----------a~~~g~~~~~~~ 303 (305)
....+..+++.++++++|++.++|++++.+.+.+.....+++++|.+++++ ....|.++++.|
T Consensus 238 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~Y 312 (528)
T PRK07470 238 SERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYF 312 (528)
T ss_pred ccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhC
Confidence 333478999999999999999999999999887655556777887665432 233566777665
No 58
>PRK06188 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.7e-35 Score=268.55 Aligned_cols=274 Identities=19% Similarity=0.217 Sum_probs=223.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++.+.++++|+..++.+.++.+||+||.++ +++++..|.+.|+++|++|+++++|+++++++++||++.|++++|++|
T Consensus 16 ~~~~~~~~~~~~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 94 (524)
T PRK06188 16 HLLVSALKRYPDRPALVLGDTRLTYGQLADR-ISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHP 94 (524)
T ss_pred HHHHHHHHHCCCCeEEEECCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEeccc
Confidence 5778888999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++.++++.+++++......+.+.....+...+++.+.... . ..++.......+..... ...
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~---~~~ 165 (524)
T PRK06188 95 LGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP---D---GVDLLAAAAKFGPAPLV---AAA 165 (524)
T ss_pred CCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCcc---c---hhhHHHhhhccCccccc---ccC
Confidence 99999999999999999999987643445555555555555555444321 0 11222111111111100 122
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||+|.+||.++...+......+++ ..+|++++..|++|.+|+. ++.++..|+++++.+..
T Consensus 166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~~~~~~~ 242 (524)
T PRK06188 166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEW-PADPRFLMCTPLSHAGGAF--FLPTLLRGGTVIVLAKF 242 (524)
T ss_pred CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCC-CcCcEEEEecCchhhhhHH--HHHHHHcCCEEEEcCCC
Confidence 45669999999999999999999999999999888888888 8999999999999988863 67889999999999876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
. +..+++.++++++|++.++|+++..+++.......+++++|.++++
T Consensus 243 ~-~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~g 289 (524)
T PRK06188 243 D-PAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYG 289 (524)
T ss_pred C-HHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEc
Confidence 6 7999999999999999999999999998766666677888765443
No 59
>PRK09274 peptide synthase; Provisional
Probab=100.00 E-value=2.9e-35 Score=270.83 Aligned_cols=270 Identities=16% Similarity=0.221 Sum_probs=208.3
Q ss_pred hHHHHHHHhcccceeeeccCC----------ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHH
Q psy2835 3 AFLKLGLERYHSVCIIGFNAP----------EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~----------~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~ 72 (305)
+++.+.++++|+..++.+.+. .+||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||++
T Consensus 10 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~-~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~ 88 (552)
T PRK09274 10 RHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDAR-SDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFK 88 (552)
T ss_pred HHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHH
Confidence 467778888999777766443 8999999996 99999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHH-HHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 73 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 73 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
+|++++|++|.++.+++.++++++++++++++.+... ..+... .......++.++... ..+...++++........
T Consensus 89 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 165 (552)
T PRK09274 89 AGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL-LWGGTTLATLLRDGAAAP 165 (552)
T ss_pred cCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc-ccCCccHHHhcccCcccc
Confidence 9999999999999999999999999999999753211 111111 112233333332210 112223444432111111
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
. ......++++++|+|||||||.||+|++||+++..++......+++ .++|+.++.+|++|.+++ .
T Consensus 166 ~-----~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~~--------~ 231 (552)
T PRK09274 166 F-----PMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGI-EPGEIDLPTFPLFALFGP--------A 231 (552)
T ss_pred C-----CCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCC-CCCceeeeccCHHHhhhh--------h
Confidence 0 0113456899999999999999999999999999998888888888 899999999999886543 3
Q ss_pred hCcEEEEeCC------ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 232 VAATLWFADK------NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 232 ~G~~~v~~~~------~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.|+++++.+. ..++..+++.++++++|+++++|+++..|.+.......++++||.++++
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 296 (552)
T PRK09274 232 LGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISA 296 (552)
T ss_pred hCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEec
Confidence 5888887652 2236899999999999999999999999998876667789999977665
No 60
>PLN02574 4-coumarate--CoA ligase-like
Probab=100.00 E-value=1.4e-35 Score=273.21 Aligned_cols=266 Identities=15% Similarity=0.233 Sum_probs=204.7
Q ss_pred Hhcccceeeecc--CCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCH
Q psy2835 10 ERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86 (305)
Q Consensus 10 ~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~ 86 (305)
+++|+..++.+. +.++||+||.++ ++++|+.|.+ .|+++||+|+++++|+.++++++|||+++|++++|++|..+.
T Consensus 50 ~~~~~~~a~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~ 128 (560)
T PLN02574 50 HNHNGDTALIDSSTGFSISYSELQPL-VKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSL 128 (560)
T ss_pred cccCCCCEEEECCCCCcccHHHHHHH-HHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCH
Confidence 456676555553 347999999996 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC----CCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP----DKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 87 ~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
+++.++++++++++++++.+. .+.+... ... ++.+.... .......++++.......... ...
T Consensus 129 ~~l~~~l~~~~~~~~~~~~~~-~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 195 (560)
T PLN02574 129 GEIKKRVVDCSVGLAFTSPEN-VEKLSPL-----GVP-VIGVPENYDFDSKRIEFPKFYELIKEDFDFVPK------PVI 195 (560)
T ss_pred HHHHHHHHhcCCEEEEECHHH-HHHHHhc-----CCc-EEecCcccccccCccCcccHHHHhhcCCccccc------CCC
Confidence 999999999999999998763 3333221 111 22121110 012234455554432211111 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++++++++|||||||.||||++||+++..++..... .......++++++.+|++|.+|+...++.++..|+++++
T Consensus 196 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~ 275 (560)
T PLN02574 196 KQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVV 275 (560)
T ss_pred CcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEE
Confidence 5689999999999999999999999999987765543 122213568899999999999988777888889999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH-hhcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA-VGKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~~sl~~~~~~ 290 (305)
.+.++ +..+++.+++|++|++.++|+++..|.+.... ...+++++|.++++
T Consensus 276 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~g 327 (560)
T PLN02574 276 MRRFD-ASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCG 327 (560)
T ss_pred ecCCC-HHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEe
Confidence 98765 79999999999999999999999999886543 34567888876554
No 61
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=2.5e-35 Score=267.13 Aligned_cols=270 Identities=18% Similarity=0.212 Sum_probs=217.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|++.+.+.||..++.+.++.+||+|+.++ ++++|++|.+.|+++||+|+++++|+.+++++++|++++|++++|+++
T Consensus 6 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i~~ 84 (483)
T PRK03640 6 NWLKQRAFLTPDRTAIEFEEKKVTFMELHEA-VVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNT 84 (483)
T ss_pred HHHHHHHHhCCCceEEEeCCeeeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEecCc
Confidence 5788899999999888888999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++.++++.+++++... ....... ...++++.......... ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~~~--------------------~~~~~~~~~~~~~~~~~-----~~~~ 138 (483)
T PRK03640 85 RLSREELLWQLDDAEVKCLITDDDFE-AKLIPGI--------------------SVKFAELMNGPKEEAEI-----QEEF 138 (483)
T ss_pred CCCHHHHHHHHHhCCCCEEEEcchhh-HHHhhhc--------------------cccHHHHhhcccccCCC-----CCCC
Confidence 99999999999999999999987632 2221110 00133333221111000 0123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|.+||.++...+......+++ +.+|++++.+|++|++|+.. ++.++..|+++++.+..
T Consensus 139 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~ 216 (483)
T PRK03640 139 DLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGL-TEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKF 216 (483)
T ss_pred CCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCC-CcCcEEEEecCHHHHHHHHH-HHHHHhcCCEEEecCCC
Confidence 56899999999999999999999999998887777777888 99999999999999999865 78999999999999876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~~ 303 (305)
. +..+++.++++++|++.++|+++..|.+..... ...+++|.+++ .+.++.|+++++.|
T Consensus 217 ~-~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~Y 285 (483)
T PRK03640 217 D-AEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSY 285 (483)
T ss_pred C-HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeee
Confidence 5 799999999999999999999999998643322 22345554433 23444577777665
No 62
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=100.00 E-value=3.6e-35 Score=274.32 Aligned_cols=259 Identities=15% Similarity=0.120 Sum_probs=199.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+++||+||.++ +.++|+.|+++|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++|+++|
T Consensus 113 ~~~Ty~eL~~~-v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li 191 (652)
T TIGR01217 113 APVTWAELRRQ-VASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLF 191 (652)
T ss_pred eEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 47999999996 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeChH--------HHHHHHHHhccCCCccEEEEccCCCC-------CCCcccHHHHHHhccCCCCchhHHhhhccCCCce
Q psy2835 103 VEDDK--------QLEKILKVKAQCPKLKAIVQYEGKPD-------KPGVISWDELMELGRAAPDESLDRVLETIATNEC 167 (305)
Q Consensus 103 ~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (305)
+++.. ..+.+.++...++.++.++.+..... ..+...|+++.......... ......+++
T Consensus 192 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~ 266 (652)
T TIGR01217 192 TVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELV-----FEQLPFDHP 266 (652)
T ss_pred EccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCCCC-----ceecCCCCC
Confidence 97642 13455555566666666665542110 01234566665432111100 012356899
Q ss_pred eEEEeccCCCCCCcceEechhHHHH-HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC---cc
Q psy2835 168 CTLVYTSGTEGASKPVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK---NA 243 (305)
Q Consensus 168 ~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~---~~ 243 (305)
++|+|||||||.||||+++|.+++. ........+++ .++|++++..|+.|+.+. + ++.++..|+++++.+. ..
T Consensus 267 ~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~-~-~~~~l~~G~t~vl~~g~~~~~ 343 (652)
T TIGR01217 267 LWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL-GPGDRLFYYTTTGWMMWN-W-LVSGLATGATLVLYDGSPGFP 343 (652)
T ss_pred EEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCC-CCCcEEEEeCCcchhhhH-H-HHHHHhcCcEEEEECCCCCCC
Confidence 9999999999999999999998764 34444555778 899999999999997542 3 5689999999999863 22
Q ss_pred chhHHHHHhhhcCCcEEEechHHHHHHHHHH--HHhhcccChHHHHHHH
Q psy2835 244 LKGSLINTLLEVRPHVFLAVPRVWEKIHEKL--MAVGKQTTGVKRWIAN 290 (305)
Q Consensus 244 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--~~~~~~~~sl~~~~~~ 290 (305)
++..+++.++++++|++..+|.++..+.+.. .....++++||.++.+
T Consensus 344 ~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~g 392 (652)
T TIGR01217 344 ATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVAST 392 (652)
T ss_pred CchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEee
Confidence 3678999999999999988887777665421 1234578899877654
No 63
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=100.00 E-value=2.1e-35 Score=276.61 Aligned_cols=271 Identities=18% Similarity=0.182 Sum_probs=209.0
Q ss_pred hcccceeeeccC-----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCC
Q psy2835 11 RYHSVCIIGFNA-----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 85 (305)
Q Consensus 11 ~~~~~~~~~~~~-----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~ 85 (305)
++|+..++.+.+ +++||+||.++ +.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++
T Consensus 96 ~~~~~~Al~~~~~~~~~~~~Ty~eL~~~-v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~ 174 (655)
T PRK03584 96 RRDDRPAIIFRGEDGPRRELSWAELRRQ-VAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFG 174 (655)
T ss_pred CCCCCeEEEEECCCCceEEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCC
Confidence 367766665532 57999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEEEeChH--------HHHHHHHHhccCCCccEEEEccCCC------CCCCcccHHHHHHhccCCC
Q psy2835 86 PEACLHCLVTSDANICVVEDDK--------QLEKILKVKAQCPKLKAIVQYEGKP------DKPGVISWDELMELGRAAP 151 (305)
Q Consensus 86 ~~~~~~~l~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~l~~~~~~~~ 151 (305)
.+++.+++++++++++++++.. ..+.+.++...++..+.++.+.... .......|+++........
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (655)
T PRK03584 175 VQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAE 254 (655)
T ss_pred HHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccCC
Confidence 9999999999999999997642 1234444555566666666554321 1123455666654211111
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHH-HHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.. ......+++++|+|||||||.||||++||.+++.+ .......+++ .++|++++..++.|+.+. .++.++
T Consensus 255 ~~-----~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~--~~~~~L 326 (655)
T PRK03584 255 LE-----FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDL-GPGDRFFWYTTCGWMMWN--WLVSGL 326 (655)
T ss_pred CC-----ceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCC-CCCCEEEEcCCchHHhHH--HHHHHH
Confidence 10 12346789999999999999999999999987654 4455566778 899999999999987543 367899
Q ss_pred HhCcEEEEeCC---ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~~ 290 (305)
..|+++++.+. ..++..+++.++++++|++..+|++++.+.+... ....++++||.++.+
T Consensus 327 ~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~ 391 (655)
T PRK03584 327 LVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGST 391 (655)
T ss_pred HcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEe
Confidence 99999999863 2347899999999999999999999999876421 233567888866544
No 64
>PRK13388 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=6.1e-35 Score=267.77 Aligned_cols=272 Identities=19% Similarity=0.239 Sum_probs=211.3
Q ss_pred cccceeeeccCCccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHH
Q psy2835 12 YHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 90 (305)
Q Consensus 12 ~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~ 90 (305)
.|+..++.+.++.+||+||.++ ++++|..|.+.|+ .+||+|+++++|+++++++++||+++|++++|++|..+.+++.
T Consensus 14 ~p~~~Al~~~~~~lTy~el~~~-~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~ 92 (540)
T PRK13388 14 GDDTIAVRYGDRTWTWREVLAE-AAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALA 92 (540)
T ss_pred cCCceEEEECCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHH
Confidence 5777777778889999999996 9999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEE
Q psy2835 91 HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTL 170 (305)
Q Consensus 91 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (305)
++++..++++++++.+. .+.+.++. .+..+ ++.++.. .+.++.......... ....+++++++
T Consensus 93 ~~l~~~~~~~~i~~~~~-~~~~~~~~--~~~~~-~i~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~a~i 155 (540)
T PRK13388 93 ADIRRADCQLLVTDAEH-RPLLDGLD--LPGVR-VLDVDTP-------AYAELVAAAGALTPH------REVDAMDPFML 155 (540)
T ss_pred HHHHhcCCCEEEEChhh-hHHHHhhc--ccCce-EEEccch-------hhhhhhccccCcCCC------CCCCCCCeEEE
Confidence 99999999999998763 33333321 22223 2323221 233333211111110 12467999999
Q ss_pred EeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHH
Q psy2835 171 VYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLIN 250 (305)
Q Consensus 171 ~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 250 (305)
+|||||||.||||+++|+++..........+++ ..+|+++..+|++|.+|+...++.++..|+++++.+.+. +..+++
T Consensus 156 ~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~-~~~~~~ 233 (540)
T PRK13388 156 IFTSGTTGAPKAVRCSHGRLAFAGRALTERFGL-TRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFS-ASGFLD 233 (540)
T ss_pred EECCCCCCCCCEEEecHHHHHHHHHHHHHHhCC-CCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCC-HHHHHH
Confidence 999999999999999999999888887888888 999999999999999998776777899999999887665 689999
Q ss_pred HhhhcCCcEEEechHHHHHHHHHHHHhhcccChHH---------HHHHHHHHHhhhHHHhhh
Q psy2835 251 TLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK---------RWIANYAKSTSLQHYMAY 303 (305)
Q Consensus 251 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~---------~~~~~~a~~~g~~~~~~~ 303 (305)
.++++++|++..+|..+..+++.+.......++++ .....+.+..|.++++.|
T Consensus 234 ~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~~G~~~~~~~~~~~~~~~~~~l~~~Y 295 (540)
T PRK13388 234 DVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASPRDIAEFSRRFGCQVEDGY 295 (540)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEEECCCCCHHHHHHHHHHhCCceeccc
Confidence 99999999999999999988764322111112222 222334445677777766
No 65
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.1e-35 Score=270.03 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=225.0
Q ss_pred hHHHHHHHhcccceeeec--c--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGF--N--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
+++++.++++|++.++.. . .+++||+||.++ ++++|++|.+.|+++||+|+++++|+.+++++++||+++|++++
T Consensus 14 ~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~-v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v 92 (542)
T PRK06018 14 RIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDR-ALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICH 92 (542)
T ss_pred HHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEee
Confidence 678899999999877753 2 267999999995 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC-----CCcccHHHHHHhccCCCCc
Q psy2835 79 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK-----PGVISWDELMELGRAAPDE 153 (305)
Q Consensus 79 ~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 153 (305)
|++++++.+++.++++.++++.++++.+. .+.+.++....+..+.++...+.... ++...++++........
T Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (542)
T PRK06018 93 TVNPRLFPEQIAWIINHAEDRVVITDLTF-VPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGDF-- 169 (542)
T ss_pred ccccccCHHHHHHHHhccCCCEEEEcccc-HHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCccc--
Confidence 99999999999999999999999999874 45565555555555555544432111 22334555543321110
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHH--HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITF--NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
......++++++|+|||||||.||+|++||++.+. ........+++ ..+|+++...|++|.+++.. .+.++.
T Consensus 170 ----~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~h~~~~~~-~~~~~~ 243 (542)
T PRK06018 170 ----AWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGT-SAADTMLPVVPLFHANSWGI-AFSAPS 243 (542)
T ss_pred ----CcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCC-CCCCEEEEecCHHHHhhhHH-HHhhhh
Confidence 01133567899999999999999999999997532 22233445677 88999999999999988765 567889
Q ss_pred hCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHh
Q psy2835 232 VAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYM 301 (305)
Q Consensus 232 ~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~ 301 (305)
.|+++++......+..+++.++++++|++.++|+++..+.+.......+++++|.++.+ +.++.|+++++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~ 323 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRH 323 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHhCCCeEe
Confidence 99999987654457899999999999999999999999988765555567777755432 22226666666
Q ss_pred hh
Q psy2835 302 AY 303 (305)
Q Consensus 302 ~~ 303 (305)
.|
T Consensus 324 ~Y 325 (542)
T PRK06018 324 AW 325 (542)
T ss_pred ee
Confidence 55
No 66
>PRK05857 acyl-CoA synthetase; Validated
Probab=100.00 E-value=8.4e-36 Score=273.52 Aligned_cols=284 Identities=16% Similarity=0.142 Sum_probs=210.3
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+.|.+.++++|+..++.+ +++.+||+||.++ ++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 18 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 18 DRVFEQARQQPEAIALRRCDGTSALRYRELVAE-VGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHHHHHHhhCCCcEEEeecCCCceeeHHHHHHH-HHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 456777888999777654 3457999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
+++++.+++.++++.++++++++++... .....+........ .+.++.... ... ..... ..... ....
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~--~~~~~---~~~~~----~~~~ 164 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSK-MASSAVPEALHSIP-VIAVDIAAV-TRE--SEHSL---DAASL----AGNA 164 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccch-hccccccccccccc-eeEeecccc-ccc--ccccc---ccccc----cccc
Confidence 9999999999999999999999997631 11111111111222 122221110 000 00000 00000 0011
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
...++++++++|||||||.||||++||+++.++...... .+++ ..++++++.+|++|..++.. .+.++..|+++
T Consensus 165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~~~ 242 (540)
T PRK05857 165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTW-VVGETTYSPLPATHIGGLWW-ILTCLMHGGLC 242 (540)
T ss_pred CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccccc-ccCceeeecCCccccchHHH-HHHHhhcceeE
Confidence 346689999999999999999999999999876544322 2345 67889999999999998865 78889999998
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
++.+. . +..+++.+++|+||+++++|+++..|.+.......+++++|.++++ |....|+++++.|
T Consensus 243 v~~~~-~-~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~Y 317 (540)
T PRK05857 243 VTGGE-N-TTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVY 317 (540)
T ss_pred EecCC-C-hhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHHHhCCeeeccc
Confidence 76543 3 5899999999999999999999999988765555677888765443 3344666666655
No 67
>PRK07867 acyl-CoA synthetase; Validated
Probab=100.00 E-value=8.2e-35 Score=266.20 Aligned_cols=279 Identities=16% Similarity=0.152 Sum_probs=215.8
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|+..+. ++..++.+.++.+||+||.++ ++++|..|.+. |++++++|+++++|+++++++++||+++|++++|++
T Consensus 9 ~~l~~~a~--~~~~a~~~~~~~~Ty~el~~~-v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 85 (529)
T PRK07867 9 ELLLPLAE--DDDRGLYFEDSFTSWREHIRG-SAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLN 85 (529)
T ss_pred HHHHHhcc--cCCceEEECCcEEeHHHHHHH-HHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEec
Confidence 44555554 565666678889999999997 99999999997 899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+..+.+++.+++++++++++++++.. ...+.++. +... ++..+. ..+.++.......... ...
T Consensus 86 ~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~---~~~~-~~~~~~-------~~~~~~l~~~~~~~~~-----~~~ 148 (529)
T PRK07867 86 PTRRGAALARDIAHADCQLVLTESAH-AELLDGLD---PGVR-VINVDS-------PAWADELAAHRDAEPP-----FRV 148 (529)
T ss_pred CCCChHHHHHHHHhCCCeEEEECHhH-HHHHHhhc---cCce-EEEecc-------ccHHHHhcccCCCCCC-----ccc
Confidence 99999999999999999999999764 34333322 1222 221211 1244444322111110 013
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||+|++||+++..+.......+++ ..+|++++.+|++|.+++...++.++..|+++++.+.
T Consensus 149 ~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~ 227 (529)
T PRK07867 149 ADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGL-GPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK 227 (529)
T ss_pred CCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCC-CcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCC
Confidence 467899999999999999999999999999888888888888 8999999999999999988878889999999999876
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH---------HHHHHHHhhhHHHhhh
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW---------IANYAKSTSLQHYMAY 303 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~---------~~~~a~~~g~~~~~~~ 303 (305)
.+ +..+++.++++++|++.++|+.+..+++..+......+++|.+ .-.+.+..|+++++.|
T Consensus 228 ~~-~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~~~gg~~~~~~~~~~~~~~g~~l~~~Y 297 (529)
T PRK07867 228 FS-ASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGDIARFARRFGCVVVDGF 297 (529)
T ss_pred CC-HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEEEecCCCChHHHHHHHHHhCCcEEEee
Confidence 65 6899999999999999999999998876543222222344321 2234555677777766
No 68
>PRK05852 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5.2e-35 Score=268.09 Aligned_cols=291 Identities=15% Similarity=0.171 Sum_probs=215.2
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++++.++++|++.++.+. .+.+||+||.++ ++++|++|.+.|+++||+|+++++|+.+++++++||+++|++++++
T Consensus 20 ~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l 98 (534)
T PRK05852 20 DLVEVAATRLPEAPALVVTADRIAISYRDLARL-VDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL 98 (534)
T ss_pred HHHHHHHHhCCCCcEEEecCCCCcccHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEEeec
Confidence 6788889999997776553 347999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC-CCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-DKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++.++.+++.+++++++++.++++.... ....... .......+.+.... ...+.... ...... .+.... ..
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~--~~ 170 (534)
T PRK05852 99 DPALPIAEQRVRSQAAGARVVLIDADGP-HDRAEPT--TRWWPLTVNVGGDSGPSGGTLSV-HLDAAT--EPTPAT--ST 170 (534)
T ss_pred CCCCCcHHHHHHHHhCCCCEEEEcCCCc-chhcccc--ccccceeeeeccccccccccccc-cccccc--CCCccc--cc
Confidence 9999999999999999999999986521 1111000 00011111111110 00011000 000000 000000 00
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.....+++++++|||||||.||+|+++|+++...+......+++ ..+|++++..|++|.+|+...++.++..|+++++.
T Consensus 171 ~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 249 (534)
T PRK05852 171 PEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRL-SPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP 249 (534)
T ss_pred cCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCC-CCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC
Confidence 11235788999999999999999999999999988888888888 89999999999999999988889999999999886
Q ss_pred CC-ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHh--hcccChHHHHHH-----------HHHHHhhhHHHhhh
Q psy2835 240 DK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV--GKQTTGVKRWIA-----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--~~~~~sl~~~~~-----------~~a~~~g~~~~~~~ 303 (305)
+. ...+..+++.++++++|+++++|+++..|.++.... ..+.+++|.++. .+.+.+|+++++.|
T Consensus 250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~Y 327 (534)
T PRK05852 250 ARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAF 327 (534)
T ss_pred CCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhcc
Confidence 53 233678999999999999999999999998865432 234556553322 23445777887776
No 69
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=100.00 E-value=7e-35 Score=289.07 Aligned_cols=296 Identities=19% Similarity=0.195 Sum_probs=227.3
Q ss_pred hHHHHHHHhcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+.+++.++++|+..++.+ .++++||+|+.++ ++++|+.|.+ ++++||+|+++++|+++++++++||+++|++++|++
T Consensus 619 ~~~~~~a~~~p~~~a~~~~~~~~~Ty~el~~~-~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 696 (1146)
T PRK08633 619 EAWIDTAKRNWSRLAVADSTGGELSYGKALTG-ALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVPVNLN 696 (1146)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCcCcHHHHHHH-HHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeC
Confidence 567778889999777765 4679999999996 9999999987 489999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHH--hccCCCccEEEEccCCCCC-CCcccHHHHHHhccCCCCchhHHh
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKV--KAQCPKLKAIVQYEGKPDK-PGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
+..+.+++.+++++++++++++++.. .+.+.+. ....+....++..++.... .....+.+...... .+.......
T Consensus 697 ~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 774 (1146)
T PRK08633 697 YTASEAALKSAIEQAQIKTVITSRKF-LEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARL-LPARLLKRL 774 (1146)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEcHHH-HHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhcc-CCHHHHHhh
Confidence 99999999999999999999998763 3443321 0112233344444332111 11111222211110 011000000
Q ss_pred -hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 159 -LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 159 -~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
.....++++++++|||||||.||+|.+||+++..+.......+++ .++|++++.+|++|.+|+...++.++..|++++
T Consensus 775 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v 853 (1146)
T PRK08633 775 YGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNL-RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVV 853 (1146)
T ss_pred ccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCC-CCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEE
Confidence 123467999999999999999999999999999998888888888 899999999999999999877899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+...+++.+++.++++++|++.++|++++.+.++......+++++|.++.+ +.+..|+++++.|
T Consensus 854 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~Y 930 (1146)
T PRK08633 854 YHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGY 930 (1146)
T ss_pred EeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeeccc
Confidence 98765557899999999999999999999999988665566678888866554 2334677777665
No 70
>PLN02479 acetate-CoA ligase
Probab=100.00 E-value=2e-34 Score=265.88 Aligned_cols=291 Identities=14% Similarity=0.136 Sum_probs=215.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
.++...+..+|+..++.+.++.+||+||.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 24 ~~~~~~~~~~p~~~a~~~~~~~~ty~eL~~~-~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 102 (567)
T PLN02479 24 WFLERAAVVHPTRKSVVHGSVRYTWAQTYQR-CRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNI 102 (567)
T ss_pred HHHHHHHhhCCCceEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEecc
Confidence 4567778889998888788889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-------CccEEEEccCCCC---------CCCcccHHHHHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-------KLKAIVQYEGKPD---------KPGVISWDELMEL 146 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~---------~~~~~~~~~l~~~ 146 (305)
..+.+++.+++++++++++++++.+ .+...++...+. ....++.+..... ..+...++++...
T Consensus 103 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PLN02479 103 RLNAPTIAFLLEHSKSEVVMVDQEF-FTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYEKFLET 181 (567)
T ss_pred ccCHHHHHHHHhhcCceEEEEchhh-hhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHHHHHhc
Confidence 9999999999999999999998764 344333322111 1122333332110 0223345555543
Q ss_pred ccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHH
Q psy2835 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDI 226 (305)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~ 226 (305)
........ .....+++++++|||||||.||+|++||+++..........+++ +.++++++..|++|.+|+...+
T Consensus 182 ~~~~~~~~-----~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~~~~~~ 255 (567)
T PLN02479 182 GDPEFAWK-----PPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGM-NEGAVYLWTLPMFHCNGWCFTW 255 (567)
T ss_pred cccccccC-----CCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCC-CCCCEEEEecchhhhhhHHHHH
Confidence 21110000 11233567889999999999999999999988776665666777 8899999999999999976655
Q ss_pred HHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh-cccChHHHHHHH----------HHHHh
Q psy2835 227 YSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG-KQTTGVKRWIAN----------YAKST 295 (305)
Q Consensus 227 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~sl~~~~~~----------~a~~~ 295 (305)
...+..|.++++ ...+ +..+++.++++++|++.++|+++..|.++..... .++++++.++++ ...+.
T Consensus 256 ~~~~~~g~~~~~-~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~ 333 (567)
T PLN02479 256 TLAALCGTNICL-RQVT-AKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSEK 333 (567)
T ss_pred HHHhhcCceEec-cCCC-HHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHhc
Confidence 556666666555 4444 6899999999999999999999999987654332 245666544332 22334
Q ss_pred hhHHHhhh
Q psy2835 296 SLQHYMAY 303 (305)
Q Consensus 296 g~~~~~~~ 303 (305)
|.++++.|
T Consensus 334 ~~~~~~~y 341 (567)
T PLN02479 334 GFRVTHTY 341 (567)
T ss_pred CCceeccc
Confidence 66666655
No 71
>PRK07514 malonyl-CoA synthase; Validated
Probab=100.00 E-value=2.3e-34 Score=262.11 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=214.1
Q ss_pred hHHHHHHHhcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++...+ .+|+..++.+ +++.+||+||.++ ++++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|++
T Consensus 7 ~~~~~~~-~~~~~~a~~~~~~~~~Ty~eL~~~-~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~ 84 (504)
T PRK07514 7 DALRAAF-ADRDAPFIETPDGLRYTYGDLDAA-SARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLN 84 (504)
T ss_pred HHHHHHh-hCCCCeEEEeCCCCEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECC
Confidence 4556666 7788777665 6778999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+..+.+++..+++.++++++++++.. .+.+....... ....++.++... ...+.+..... +.. .....
T Consensus 85 ~~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~---~~~---~~~~~ 152 (504)
T PRK07514 85 TAYTLAELDYFIGDAEPALVVCDPAN-FAWLSKIAAAA-GAPHVETLDADG----TGSLLEAAAAA---PDD---FETVP 152 (504)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEccch-hHHHHHhhhcc-CCceEEEecCCC----cccHHHhhhhc---Ccc---cCccc
Confidence 99999999999999999999998773 34444433322 222233333211 11122222111 110 00123
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||+|.+||+++...+......+++ .++|++++..|++|..|+...++.++..|+++++.+.
T Consensus 153 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~ 231 (504)
T PRK07514 153 RGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRF-TPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK 231 (504)
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCC-CCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC
Confidence 467899999999999999999999999999998888788888 8999999999999999988888899999999999987
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.. +..+++.+ +++|++..+|.++..+++........++++|.++.+
T Consensus 232 ~~-~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~g 277 (504)
T PRK07514 232 FD-PDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISG 277 (504)
T ss_pred CC-HHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEec
Confidence 65 68888888 479999999999999987654455567788876653
No 72
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=100.00 E-value=5.9e-34 Score=261.52 Aligned_cols=290 Identities=22% Similarity=0.304 Sum_probs=217.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.+.++|+..++.+.++.+||.||.++ ++++|.+|.+.|+.+||+|+++++|+.+++++++||+++|++++|++|
T Consensus 25 ~~~~~~~~~~p~~~a~~~~~~~~ty~el~~~-~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 103 (541)
T TIGR03205 25 DLLSKAAADYGPRPALEFRDRPITYTELEAM-AETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSP 103 (541)
T ss_pred HHHHHHHHHcCCCceEEECCcEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCC
Confidence 5678888999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH-HHHHHHHhccCCCccEEEEccCCC------------CCCCcccHHHHHHhccC
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ-LEKILKVKAQCPKLKAIVQYEGKP------------DKPGVISWDELMELGRA 149 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~l~~~~~~ 149 (305)
..+.+++.+++++++++.+++++... .+...+.... .....+++..... ......+++++......
T Consensus 104 ~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (541)
T TIGR03205 104 LDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAA 182 (541)
T ss_pred CCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCcccccHHHHHhcCCC
Confidence 99999999999999999999986421 1112221111 1123333332211 01123445555543211
Q ss_pred CCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh------ccCCCCceEEEeCchhHHHHHH
Q psy2835 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF------KLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
.... ....++++++++|||||||.||+|+++|+++....... ..+ .. ...+++++..|++|.+++.
T Consensus 183 ~~~~------~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~ 254 (541)
T TIGR03205 183 PAEW------PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATR-GDVERVICVLPLFHIYALT 254 (541)
T ss_pred CCCC------CCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccC-CCCceEEEeccHHHHHHHH
Confidence 1110 12356899999999999999999999999987654322 211 12 3457999999999999988
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------H-H
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------Y-A 292 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~-a 292 (305)
..++.++..|+++++.+..+ +..+++.++++++|++.++|+++..+.+.......+++++|.++.+ + .
T Consensus 255 ~~~~~~l~~g~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~ 333 (541)
T TIGR03205 255 VILLRSLRRGDLISLHQRFD-VAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFE 333 (541)
T ss_pred HHHHHHHhcCCEEEecCCCC-HHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHH
Confidence 87889999999998887655 7999999999999999999999999887543344456777766543 2 2
Q ss_pred HHhhhHHHhhh
Q psy2835 293 KSTSLQHYMAY 303 (305)
Q Consensus 293 ~~~g~~~~~~~ 303 (305)
...|.++++.|
T Consensus 334 ~~~~~~~~~~Y 344 (541)
T TIGR03205 334 RKTGLKLKSGW 344 (541)
T ss_pred HHhCCCeeccc
Confidence 23566666655
No 73
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.1e-33 Score=259.88 Aligned_cols=263 Identities=20% Similarity=0.214 Sum_probs=215.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.++..+.++|+..++.+.++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 21 ~~~~~~a~~~~~~~a~~~~~~~~ty~~l~~~-~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~vpl~~ 99 (542)
T PRK07786 21 NQLARHALMQPDAPALRFLGNTTTWRELDDR-VAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNF 99 (542)
T ss_pred HHHHHHHHHCCCCeEEEeCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEEcCc
Confidence 4577778899998888888999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.+++++.++++++++... .+.+.......+..+.++..++.. ..+..+++++.......... ...
T Consensus 100 ~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~ 171 (542)
T PRK07786 100 RLTPPEIAFLVSDCGAHVVVTEAAL-APVATAVRDIVPLLSTVVVAGGSS-DDSVLGYEDLLAEAGPAHAP------VDI 171 (542)
T ss_pred cCCHHHHHHHHHhCCCcEEEEccch-HHHHHHhhhccCccceEEEecCCC-cccccCHHHHhhccCCCCCC------CCC
Confidence 9999999999999999999998763 345544444455666666554321 23345676665433211111 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
..+++++++|||||||.||+|.+||+++...+......+++...++++++..|++|.+|+. .++.++..|+++++.+.
T Consensus 172 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~~~~ 250 (542)
T PRK07786 172 PNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIG-SMLPGLLLGAPTVIYPLG 250 (542)
T ss_pred CCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHH-HHHHHHHccCEEEEccCC
Confidence 4578999999999999999999999999988877776666524678999999999999884 58999999999998652
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM 275 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~ 275 (305)
...|..+++.++++++|+++++|+++..+.....
T Consensus 251 ~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~ 284 (542)
T PRK07786 251 AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ 284 (542)
T ss_pred CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcc
Confidence 2347999999999999999999999999987643
No 74
>PRK07798 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5.2e-34 Score=261.46 Aligned_cols=275 Identities=19% Similarity=0.186 Sum_probs=217.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 7 ~~~~~~a~~~p~~~a~~~~~~~~ty~el~~~-~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l~~ 85 (533)
T PRK07798 7 DLFEAVADAVPDRVALVCGDRRLTYAELEER-ANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNY 85 (533)
T ss_pred HHHHHHHHhCCCceEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEecCc
Confidence 6889999999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC---CCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK---PGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
.++.+++.++++.+++++++++... ...+.++....+..+.++.+++.... .+..+++++..........
T Consensus 86 ~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 158 (533)
T PRK07798 86 RYVEDELRYLLDDSDAVALVYEREF-APRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDF------ 158 (533)
T ss_pred CCCHHHHHHHHhhcCCCEEEEchhh-HHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCC------
Confidence 9999999999999999999998773 46666666666667777766644322 2344677766543221111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---------------ccCCCCceEEEeCchhHHHHHHH
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---------------KLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---------------~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
....++.++|+|||||||.||+|++||+++..........+ .. ..+++++...|++|..++.
T Consensus 159 -~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pl~~~~~~~- 235 (533)
T PRK07798 159 -GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAA-GPGMRRFPAPPLMHGAGQW- 235 (533)
T ss_pred -CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccC-CCCceEEEecchhhhhhHH-
Confidence 11234457899999999999999999999987554432221 11 3568899999999999986
Q ss_pred HHHHHHHhCcEEEEeC--CccchhHHHHHhhhcCCcEEEechHHHH-HHHHHHH-HhhcccChHHHHHH
Q psy2835 225 DIYSVMTVAATLWFAD--KNALKGSLINTLLEVRPHVFLAVPRVWE-KIHEKLM-AVGKQTTGVKRWIA 289 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~--~~~~~~~~~~~i~~~~vt~~~~~P~~~~-~l~~~~~-~~~~~~~sl~~~~~ 289 (305)
.++.++..|+++++.+ ..+ +..+++.++++++|++.++|..+. .+.+... ....+++++|.++.
T Consensus 236 ~~~~~l~~G~~~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~ 303 (533)
T PRK07798 236 AAFAALFSGQTVVLLPDVRFD-ADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIAS 303 (533)
T ss_pred HHHHHHhcCceEEEecCCCcC-HHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEE
Confidence 5899999999999998 444 789999999999999999987664 3444333 33445667765543
No 75
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=100.00 E-value=1.9e-34 Score=264.43 Aligned_cols=286 Identities=11% Similarity=0.122 Sum_probs=222.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++ |++.++.+.++.+||+|+.++ ++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++++.+
T Consensus 29 ~~~~~~a~--p~~~a~~~~~~~~Ty~el~~~-~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~ 105 (536)
T PRK10946 29 DILTRHAA--SDAIAVICGERQFSYRELNQA-SDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALF 105 (536)
T ss_pred HHHHHhhC--CCCeEEEeCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCc
Confidence 45666665 888888788899999999996 999999999999999999999999999999999999999999888888
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
.....++..+++.++++.+++++... ......+...++..+.++..+. .+...+.++.........
T Consensus 106 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------ 175 (536)
T PRK10946 106 SHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLND----DGEHSLDDAINHPAEDFT------ 175 (536)
T ss_pred cccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecC----CCCccHHHHhhCcccccc------
Confidence 88888999999999999999986521 1223334444555555553322 122334444433221110
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++++|||||||.||+|++||+++..++......+++ .++|++++.+|++|.+++.. .++.++..|++++
T Consensus 176 ~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~ 254 (536)
T PRK10946 176 ATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGF-TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVV 254 (536)
T ss_pred cCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCceEEEecCccccccchhhhHHHHhhcCcEEE
Confidence 123467899999999999999999999999999999888888888 89999999999999888654 5788899999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++.++|.++..+++.... ...+++++|.++++ +...+|+++++.|
T Consensus 255 ~~~~~~-~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~Y 332 (536)
T PRK10946 255 LAPDPS-ATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVF 332 (536)
T ss_pred ECCCCC-HHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEee
Confidence 987765 68899999999999999999999999876322 23446666655443 2334676666655
No 76
>PRK06060 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.2e-34 Score=273.58 Aligned_cols=258 Identities=12% Similarity=0.096 Sum_probs=203.2
Q ss_pred hHHHHHHHh--cccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLER--YHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~--~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.+.. +||..++.+ ++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 8 ~~~~~~a~~~~~pd~~a~~~-~~~~Ty~eL~~~-~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi 85 (705)
T PRK06060 8 GLLAEQASEAGWYDRPAFYA-ADVVTHGQIHDG-AARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLA 85 (705)
T ss_pred HHHHHHHhhccCCCceEEEe-cCceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEec
Confidence 455666664 678777755 458999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
+|.++.+++.++++++++++++++.+. .+.+.. . .++ ...++........+.. ..
T Consensus 86 ~p~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~----~----~~~------------~~~~~~~~~~~~~~~~----~~ 140 (705)
T PRK06060 86 NPELHRDDHALAARNTEPALVVTSDAL-RDRFQP----S----RVA------------EAAELMSEAARVAPGG----YE 140 (705)
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEchHH-hhhhcc----c----ccc------------hhhhhhhhccccCCCC----CC
Confidence 999999999999999999999998652 122110 0 000 0111111110000000 01
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH-HhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII-QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++++++++|||||||.||||.++|+++..++.... ..+++ .++|++++..|++|.+++...++.++..|+++++.
T Consensus 141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 219 (705)
T PRK06060 141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRL-TPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVIN 219 (705)
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCC-CCcceeEEeccchhhcchhHHHHHHHhcCCEEEEe
Confidence 23568999999999999999999999999998876653 45677 88999999999999988877788999999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+....+..+.+.++++++|+++++|+++.++++... ..++++||.++++
T Consensus 220 ~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~g 268 (705)
T PRK06060 220 SAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSA 268 (705)
T ss_pred CCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEe
Confidence 865557888899999999999999999999987542 3456788876654
No 77
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=100.00 E-value=3.7e-34 Score=263.96 Aligned_cols=280 Identities=20% Similarity=0.236 Sum_probs=213.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|.+.++++|+..++.+.++.+||+||.++ ++++|+.|. +.|+++||+|+++++|+.+++++++||+++|++++|++
T Consensus 29 ~~l~~~~~~~~~~~a~~~~~~~~Ty~el~~~-~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 107 (560)
T PRK08751 29 EVFATSVAKFADRPAYHSFGKTITYREADQL-VEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107 (560)
T ss_pred HHHHHHHHhCCCCceEEECCceeeHHHHHHH-HHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEeccC
Confidence 5778889999998888788899999999996 999999997 68999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC------------------------CCCCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP------------------------DKPGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------~~~~~ 137 (305)
|.++.+++.+++++.+++++++++.. ...+.+.....+ ...++...... ..++.
T Consensus 108 p~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (560)
T PRK08751 108 PLYTPRELKHQLIDSGASVLVVIDNF-GTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGA 185 (560)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEcchh-HHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhhhhccccccCCCcc
Confidence 99999999999999999999998774 344444433333 22232221000 00112
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhcc---CCC-CceEEEe
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL---ESA-ALSVISF 213 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~---~~~-~~~~l~~ 213 (305)
..+++........... .....++++++++|||||||.||+|++||.++..++......++. ..+ .+.+++.
T Consensus 186 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (560)
T PRK08751 186 IRFREALALGRKHSMP-----TLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITA 260 (560)
T ss_pred ccHHHHHhccCCCCCC-----CCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEe
Confidence 2233333221110000 113456899999999999999999999999998887765555432 033 3577889
Q ss_pred CchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 214 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 214 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.|++|.+|+....+..+..|+++++......+..+++.++++++|++.++|.++..+.+.......++++||.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~g 337 (560)
T PRK08751 261 LPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGG 337 (560)
T ss_pred cChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeC
Confidence 99999999876667778888888776654447899999999999999999999999988655455567788877654
No 78
>PRK06178 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.6e-33 Score=260.05 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=214.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++.+|+..++.+.++.+||+||.++ ++++|..|.+.|+++|++|+++++|+.+++++++||+++|++++|++|
T Consensus 37 ~~l~~~a~~~p~~~al~~~~~~~Ty~~l~~~-~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p 115 (567)
T PRK06178 37 EYLRAWARERPQRPAIIFYGHVITYAELDEL-SDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSP 115 (567)
T ss_pred HHHHHHHHHCCCceEEEECCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEEeecCC
Confidence 5678888899998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCC--------C--------cccHHHHHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKP--------G--------VISWDELMEL 146 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~--------~~~~~~l~~~ 146 (305)
..+.+++.+++++.+++++++++.. .+.+.++.... ..+.++........+ . ...+.++...
T Consensus 116 ~~~~~~~~~~l~~~~~~~ii~~~~~-~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (567)
T PRK06178 116 LFREHELSYELNDAGAEVLLALDQL-APVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPA 193 (567)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccch-HHHHHHhhccC-CcceEEEeccccccccccccccccccccccccccccccHHHH
Confidence 9999999999999999999998874 45555554333 233333222110000 0 0112222221
Q ss_pred ccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCchhHHHHHHHH
Q psy2835 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVD 225 (305)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~ 225 (305)
....+... ......++++++|+|||||||.||+|++||.++......... ...+ ..+|++++.+|++|++|+...
T Consensus 194 ~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~ 269 (567)
T PRK06178 194 LRACTAPV---PLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG-GEDSVFLSFLPEFWIAGENFG 269 (567)
T ss_pred hhcccccc---ccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC-CCCcEEEEecchHHHHHHHHH
Confidence 11111100 011346789999999999999999999999999886655433 2455 889999999999999998777
Q ss_pred HHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH
Q psy2835 226 IYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR 286 (305)
Q Consensus 226 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~ 286 (305)
++.++..|+++++.+..+ +..+++.++++++|.+.++|..+..+.+.......++++++.
T Consensus 270 ~~~~l~~G~~~~l~~~~~-~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~ 329 (567)
T PRK06178 270 LLFPLFSGATLVLLARWD-AVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQ 329 (567)
T ss_pred HHHHHHcCceEEEeCCCC-HHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchhee
Confidence 899999999999998765 799999999999999999999999887754333445556554
No 79
>PRK08162 acyl-CoA synthetase; Validated
Probab=100.00 E-value=7e-34 Score=261.30 Aligned_cols=291 Identities=17% Similarity=0.147 Sum_probs=216.1
Q ss_pred hhHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 2 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.+.+++.++++|+..++.+.++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 21 ~~~~~~~~~~~~~~~a~~~~~~~~ty~~L~~~-~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 99 (545)
T PRK08162 21 LSFLERAAEVYPDRPAVIHGDRRRTWAETYAR-CRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLN 99 (545)
T ss_pred HHHHHHHHHHCCCCeEEEECCeEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccc
Confidence 35778888999998888888889999999995 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC------CCCcccHHHHHHhccCCCCchh
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWDELMELGRAAPDESL 155 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 155 (305)
++.+.+++.+++++++++.++++.+. .+.+.+.....+....++ +..... ..+..+++.+..........
T Consensus 100 ~~~~~~~~~~~l~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (545)
T PRK08162 100 TRLDAASIAFMLRHGEAKVLIVDTEF-AEVAREALALLPGPKPLV-IDVDDPEYPGGRFIGALDYEAFLASGDPDFAW-- 175 (545)
T ss_pred cccChHHHHHHHHhCCCeEEEEccch-hhHHHHHHhhCCCCceEE-EecCccccccCCCcccccHHHHhccCCccccc--
Confidence 99999999999999999999999874 455555444343322222 221110 01223455554322111000
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
......+++++|+|||||||.||+|+++|+++..+.......+++ ..++++++.+|++|.+|....++..+ .|++
T Consensus 176 ---~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~ 250 (545)
T PRK08162 176 ---TLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGM-PKHPVYLWTLPMFHCNGWCFPWTVAA-RAGT 250 (545)
T ss_pred ---cCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCC-CCCCeeEeccCcHhhhhHHHHHHHHH-HccE
Confidence 012244678999999999999999999999988777665666677 88899999999999998866444445 4555
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHH----------HHHHHHHHHhhhHHHhhh
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK----------RWIANYAKSTSLQHYMAY 303 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~----------~~~~~~a~~~g~~~~~~~ 303 (305)
.++..... +..+++.++++++|++.++|+++..|++........+.+.+ ..+..+.++.|+++++.|
T Consensus 251 ~~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Y 327 (545)
T PRK08162 251 NVCLRKVD-PKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVY 327 (545)
T ss_pred EEEeCCCC-HHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHhCCceeecc
Confidence 55555544 79999999999999999999999999875433222232222 122223344577777665
No 80
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=100.00 E-value=3.6e-34 Score=283.45 Aligned_cols=289 Identities=14% Similarity=0.058 Sum_probs=216.9
Q ss_pred HHHHHHHhc-ccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 4 FLKLGLERY-HSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 4 ~l~~~~~~~-~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
.+.+.++++ |+..++.+ +++++||+|+.++ ++++|+.|.+ |+++||+|+++++|+++++++++||+++|++++|+|
T Consensus 636 ~l~~~~~~~~~~~~ai~~~~~~~~Ty~el~~~-~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 713 (1140)
T PRK06814 636 ALIEAAKIHGFKKLAVEDPVNGPLTYRKLLTG-AFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMIN 713 (1140)
T ss_pred HHHHHHHHcCCCCeEeECCCCCccCHHHHHHH-HHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcC
Confidence 344455555 46666655 5689999999996 9999999975 999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHH--HHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKI--LKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
++.+.+++.++++++++++++++++. .+.. .+...+.+....++.+++... ....++.+........+. .. .
T Consensus 714 ~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~-~~--~ 787 (1140)
T PRK06814 714 FSAGIANILSACKAAQVKTVLTSRAF-IEKARLGPLIEALEFGIRIIYLEDVRA--QIGLADKIKGLLAGRFPL-VY--F 787 (1140)
T ss_pred CCCCHHHHHHHHHHcCCCEEEecHHH-HhhhcchhHHHHhccCceEEEehHhhc--cCChHHHHHHHhhccCCc-cc--c
Confidence 99999999999999999999998753 2211 112222223334444433211 111111111110000000 00 0
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++++|||||||.||||++||+++..+.......+++ +++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 788 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~ 866 (1140)
T PRK06814 788 CNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDF-SPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866 (1140)
T ss_pred CCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCC-CCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEe
Confidence 13467999999999999999999999999999988888888888 99999999999999999978889999999999998
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+....+..+.+.++++++|++..+|++++.+.+.. ...+++++|.++.+ +.+..|.++++.|
T Consensus 867 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~Y 939 (1140)
T PRK06814 867 PSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGY 939 (1140)
T ss_pred cCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEecc
Confidence 76544567889999999999999999999887642 34567777765543 3344567777665
No 81
>PRK06145 acyl-CoA synthetase; Validated
Probab=100.00 E-value=5.4e-34 Score=259.28 Aligned_cols=267 Identities=16% Similarity=0.167 Sum_probs=214.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||.||.++ ++++|.+|.+.|++++++|+++++|+++++++++||+++|++++|+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~ty~el~~~-v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 84 (497)
T PRK06145 6 ASIAFHARRTPDRAALVYRDQEISYAEFHQR-ILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84 (497)
T ss_pred HHHHHHHHHCCCceEEEECCcceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEeccc
Confidence 6788889999998888889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++..++++++++.+.. .. ... ....+.++... ...+..+.......... ...
T Consensus 85 ~~~~~~~~~~l~~~~~~~~i~~~~~~-~~-~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~ 146 (497)
T PRK06145 85 RLAADEVAYILGDAGAKLLLVDEEFD-AI-VAL------ETPKIVIDAAA----QADSRRLAQGGLEIPPQ------AAV 146 (497)
T ss_pred ccCHHHHHHHHHhcCCcEEEEccchh-hh-hhc------ccceEEecCcc----cchhHHHhccCCCCCCC------CCC
Confidence 99999999999999999999987631 11 111 01122222110 00111111111100000 134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|++||+++..........+++ ..+++++...|++|.+++....+.++..|+++++.+..
T Consensus 147 ~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~ 225 (497)
T PRK06145 147 APTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL-TASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREF 225 (497)
T ss_pred CccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCC-CCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcC
Confidence 67899999999999999999999999998777666667788 89999999999999999877778889999999998876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
. +..+++.++++++|++.++|+++..+++.......+++++|.++.+
T Consensus 226 ~-~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~g 272 (497)
T PRK06145 226 D-PEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGG 272 (497)
T ss_pred C-HHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEec
Confidence 5 7999999999999999999999999987655555566777765443
No 82
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=8.3e-34 Score=261.59 Aligned_cols=292 Identities=15% Similarity=0.157 Sum_probs=217.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|++.+.++|+..++...++.+||+||.++ ++++|+.|.+. |+++||+|+++++|+++++++++||+++|+++++++
T Consensus 28 ~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~~~ 106 (562)
T PRK12492 28 EVFERSCKKFADRPAFSNLGVTLSYAELERH-SAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTN 106 (562)
T ss_pred HHHHHHHHhCCCCeeEecCCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeccC
Confidence 5677888899998888778889999999996 99999999985 999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEcc--C----------------------CCCCCCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE--G----------------------KPDKPGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~----------------------~~~~~~~ 137 (305)
+..+.+++.+++++++++++++++.. .+......... .....+... + ....+..
T Consensus 107 ~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (562)
T PRK12492 107 PLYTAREMRHQFKDSGARALVYLNMF-GKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQA 184 (562)
T ss_pred ccCCHHHHHHHHhccCceEEEecccc-chHHHHhhhcc-CceEEEeechhhccccccchhcccccccccccccccCCccc
Confidence 99999999999999999999998652 23332222211 111111000 0 0000122
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc---------cCCC-C
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK---------LESA-A 207 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---------~~~~-~ 207 (305)
..|+++.......... ......+++++|+|||||||.||+|++||+++..++......+. + .. .
T Consensus 185 ~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 258 (562)
T PRK12492 185 VPFKQALRQGRGLSLK-----PVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM-KEGQ 258 (562)
T ss_pred ccHHHHHhccCCCCCC-----CCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc-cCCC
Confidence 3444444322111100 01345689999999999999999999999999887766555442 2 22 3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 208 ~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
+++++.+|++|.+|+...++..+..|+++++......+..+++.++++++|++..+|+++..+++.......+++++|.+
T Consensus 259 ~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~ 338 (562)
T PRK12492 259 EVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLT 338 (562)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEE
Confidence 57899999999999887778888899988777554446889999999999999999999999988665555667777765
Q ss_pred HHH-----------HHHHhhhHHHhhh
Q psy2835 288 IAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 288 ~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+ |.+..|+++++.|
T Consensus 339 ~~gG~~~~~~~~~~~~~~~~~~~~~~Y 365 (562)
T PRK12492 339 NSGGTALVKATAERWEQLTGCTIVEGY 365 (562)
T ss_pred EeccccCCHHHHHHHHHHhCCceeecc
Confidence 443 3444677776665
No 83
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=100.00 E-value=2e-34 Score=288.71 Aligned_cols=273 Identities=15% Similarity=0.153 Sum_probs=217.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++||+|+++++|+.+++++++||+++|++++|++|
T Consensus 462 ~~~~~~~~~~p~~~Al~~~~~~~Ty~eL~~~-~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~vpld~ 540 (1296)
T PRK10252 462 ALVAQQAAKTPDAPALADARYQFSYREMREQ-VVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDT 540 (1296)
T ss_pred HHHHHHHHhCCCCeEEEcCCCcEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCc
Confidence 5678889999999888889999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++++++++++++... ...+.+ .+... ...+.. ........+. ...
T Consensus 541 ~~p~~~~~~~l~~~~~~~~i~~~~~-~~~~~~----~~~~~-~~~~~~------------~~~~~~~~~~-------~~~ 595 (1296)
T PRK10252 541 GYPDDRLKMMLEDARPSLLITTADQ-LPRFAD----VPDLT-SLCYNA------------PLAPQGAAPL-------QLS 595 (1296)
T ss_pred cCHHHHHHHHHHhCCCCEEEECcch-hhhccc----CCCce-eeeccc------------ccccccCCCC-------CCC
Confidence 9999999999999999999998763 222211 11111 111110 0000000000 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||+++|+++.+.+......+++ +++|++++..|++|..+. +.++.++..|+++++.+..
T Consensus 596 ~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~ 673 (1296)
T PRK10252 596 QPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPL-TADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEPE 673 (1296)
T ss_pred CCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC-CCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECChh
Confidence 57899999999999999999999999999999998889999 999999999999997775 5689999999999998642
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh--cccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG--KQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
.+|..+++.++++++|++.++|+++..+++...... ..++++|.++++ |....|+++++.|
T Consensus 674 ~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~Y 749 (1296)
T PRK10252 674 AHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLY 749 (1296)
T ss_pred ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCC
Confidence 237889999999999999999999999987643322 345777765544 2223466666655
No 84
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.8e-33 Score=259.15 Aligned_cols=293 Identities=20% Similarity=0.193 Sum_probs=219.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|...++++|+..++.+.++.+||+||.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 27 ~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~-~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~~ 105 (557)
T PRK07059 27 DLLEESFRQYADRPAFICMGKAITYGELDEL-SRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNP 105 (557)
T ss_pred HHHHHHHHHcCCCceEEEcCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccCc
Confidence 5677888999998888788899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCC-----------------------CCCCCccc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK-----------------------PDKPGVIS 139 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------------------~~~~~~~~ 139 (305)
..+.+++.+++++.+++++++++.. ...+.++.... ..+.++..... ...++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (557)
T PRK07059 106 LYTPRELEHQLKDSGAEAIVVLENF-ATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVR 183 (557)
T ss_pred ccCHHHHHHHHHccCceEEEEchhh-HHHHHHhhccc-CCceeEEecccccccccccccccccccccccccccCCCCccc
Confidence 9999999999999999999998763 33444333222 22222221100 00022233
Q ss_pred HHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc----cC--CCCceEEEe
Q psy2835 140 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK----LE--SAALSVISF 213 (305)
Q Consensus 140 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~----~~--~~~~~~l~~ 213 (305)
++++.......... .....++++++|+|||||||.||+|+++|.++..++........ .. ...+.+++.
T Consensus 184 ~~~~~~~~~~~~~~-----~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (557)
T PRK07059 184 FNDALAEGARQTFK-----PVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA 258 (557)
T ss_pred HHHHhhccCCCCCC-----CCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEe
Confidence 44444322111110 12346789999999999999999999999999876654332221 10 124578889
Q ss_pred CchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH---
Q psy2835 214 LPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN--- 290 (305)
Q Consensus 214 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~--- 290 (305)
+|++|.+++....+.++..|++.++.+....+..+++.++++++|.+.++|.++..+.++......+++++|.++.+
T Consensus 259 ~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~ 338 (557)
T PRK07059 259 LPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMA 338 (557)
T ss_pred CCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEecccc
Confidence 99999998877678888899988877755457889999999999999999999999988655555566777755443
Q ss_pred --------HHHHhhhHHHhhh
Q psy2835 291 --------YAKSTSLQHYMAY 303 (305)
Q Consensus 291 --------~a~~~g~~~~~~~ 303 (305)
|...+|+++++.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~Y 359 (557)
T PRK07059 339 VQRPVAERWLEMTGCPITEGY 359 (557)
T ss_pred CCHHHHHHHHHHhCCCeeecc
Confidence 3344677777766
No 85
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=100.00 E-value=4e-33 Score=256.25 Aligned_cols=266 Identities=22% Similarity=0.287 Sum_probs=207.1
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.+.++|+..++.+ +++.+||+||.++ +.++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 32 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~-~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 110 (546)
T PLN02330 32 DFVLQDAELYADKVAFVEAVTGKAVTYGEVVRD-TRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGA 110 (546)
T ss_pred HHHhhhhhcCCCccEEEecCCCCcccHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccC
Confidence 567777888899777654 3578999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++..+.+++.+++++++++++++++.. ...+.++. . .++.++... ..+...|+++........... ...
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~-----~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~ 179 (546)
T PLN02330 111 NPTALESEIKKQAEAAGAKLIVTNDTN-YGKVKGLG-----L-PVIVLGEEK-IEGAVNWKELLEAADRAGDTS---DNE 179 (546)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEccch-hhhHhhcC-----C-cEEEecCCC-CCCcccHHHHHhhccccCccc---ccc
Confidence 999999999999999999999999874 34443321 1 133333221 123455777665432211110 011
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC---CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE---SAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~---~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++++++++|||||||.||||.+||.++..++... .++.. ...++.+..+|++|.+|+...++.++..|++++
T Consensus 180 ~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~ 257 (546)
T PLN02330 180 EILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSS--LFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVV 257 (546)
T ss_pred cCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHH--hhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEE
Confidence 2356899999999999999999999999998866532 22220 235689999999999998777889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccCh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTG 283 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~s 283 (305)
+.+.++ +..+++.++++++|++.++|+++..+++.......++++
T Consensus 258 ~~~~~~-~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~ 302 (546)
T PLN02330 258 VMSRFE-LRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSK 302 (546)
T ss_pred EecccC-HHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccch
Confidence 998776 689999999999999999999999998754443334443
No 86
>PRK09088 acyl-CoA synthetase; Validated
Probab=100.00 E-value=4.7e-34 Score=259.09 Aligned_cols=255 Identities=15% Similarity=0.157 Sum_probs=203.2
Q ss_pred HHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 6 KLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
+..+.++||..++.+ +++.+||+|+.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++|+++.
T Consensus 2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~-v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~ 80 (488)
T PRK09088 2 AFHARLQPQRLAAVDLALGRRWTYAELDAL-VGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWR 80 (488)
T ss_pred chhhhhCCCceEEEecCCCcEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCcc
Confidence 345677888776654 6789999999995 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccC
Q psy2835 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 163 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (305)
.+.+++.+++++.+++++++++... .. .. ....++++........... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~ii~~~~~~-~~------~~----------------~~~~~~~~~~~~~~~~~~~----~~~~~ 133 (488)
T PRK09088 81 LSASELDALLQDAEPRLLLGDDAVA-AG------RT----------------DVEDLAAFIASADALEPAD----TPSIP 133 (488)
T ss_pred CCHHHHHHHHHhCCCCEEEEcchhh-cc------cc----------------cccchhhhhhhcccccccc----CCCCC
Confidence 9999999999999999999986521 10 00 0011222221111110100 01235
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 243 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~ 243 (305)
.+++++++|||||||.||+|.+||+++...+......... ..+|++++.+|++|++|+...++.++..|+++++.+...
T Consensus 134 ~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~ 212 (488)
T PRK09088 134 PERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRV-DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFE 212 (488)
T ss_pred CCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCC-CCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 6889999999999999999999999999887777666677 889999999999999999888889999999999887665
Q ss_pred chhHHHHHhh--hcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 244 LKGSLINTLL--EVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 244 ~~~~~~~~i~--~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+..++..+. ++++|+++.+|.+++.+.+.......++++||.++.+
T Consensus 213 -~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~g 260 (488)
T PRK09088 213 -PKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTG 260 (488)
T ss_pred -HHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEec
Confidence 677888775 4899999999999999987654444556777765544
No 87
>KOG1180|consensus
Probab=100.00 E-value=6.6e-33 Score=237.19 Aligned_cols=292 Identities=20% Similarity=0.291 Sum_probs=237.0
Q ss_pred hhHHHHHHHhcccceeeec----cCCccchHHHHHHHHHHHHHHHHHcCCCCCCe-EEEEecCChhHHHHHHHHHHcCCe
Q psy2835 2 KAFLKLGLERYHSVCIIGF----NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHS-VCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~----~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~-V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
|++++...++.+|--.+.. +...+||.|+..+ +.+++.+|.+.|++++++ ++|+++-+.+|..++.||++.+++
T Consensus 63 R~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~-~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ip 141 (678)
T KOG1180|consen 63 RELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYER-VHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIP 141 (678)
T ss_pred HHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHH-HHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCe
Confidence 3455555555555322222 2357999999996 999999999999997776 999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC-------------CCcccHHHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK-------------PGVISWDEL 143 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~l 143 (305)
+|.+...+..+.+.|-|++++++.+|++.+ .+..+.....+++.++++|.++..... ....+++++
T Consensus 142 vVT~Y~TLGeeal~hsl~Et~~~~i~T~~~-LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v 220 (678)
T KOG1180|consen 142 VVTAYATLGEEALIHSLNETESTAIFTDSE-LLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDV 220 (678)
T ss_pred EEEEehhcChhhhhhhhccccceEEEeCHH-HHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHH
Confidence 999999999999999999999999999988 467777788999999999999852211 345689999
Q ss_pred HHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHH
Q psy2835 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT 223 (305)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~ 223 (305)
...+.....++ .++.++|+|+|||||||||.||||+++|+|+++.+.......+...+.|+++..+||.|+..+.
T Consensus 221 ~~lG~~~~~~~-----~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~ 295 (678)
T KOG1180|consen 221 EKLGKENEIPP-----HPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELT 295 (678)
T ss_pred HhhCCcCCCCC-----CCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHH
Confidence 98887653222 2347799999999999999999999999999999988777764328999999999999999998
Q ss_pred HHHHHHHHhCcEEEEeCCccchhHH-------HHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHHHHHHhh
Q psy2835 224 VDIYSVMTVAATLWFADKNALKGSL-------INTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTS 296 (305)
Q Consensus 224 ~~~~~~l~~G~~~v~~~~~~~~~~~-------~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~~a~~~g 296 (305)
+. +.+++.|+.+-..+.....+.- --.+...|||+|.++|++|+++-+....+....+.++.-+|..|...-
T Consensus 296 aE-~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K 374 (678)
T KOG1180|consen 296 AE-LVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERK 374 (678)
T ss_pred HH-HHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 84 7888899998877654321111 123456789999999999999999988888889999999998887655
Q ss_pred hHHHh
Q psy2835 297 LQHYM 301 (305)
Q Consensus 297 ~~~~~ 301 (305)
+..++
T Consensus 375 ~~~~~ 379 (678)
T KOG1180|consen 375 LSLIE 379 (678)
T ss_pred HHHHh
Confidence 54444
No 88
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=3.1e-33 Score=257.93 Aligned_cols=278 Identities=18% Similarity=0.244 Sum_probs=207.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++...++++|+..++.+.++.+||+||.++ +.++|.+|.+.|+++||+|+++++|+.++++++|||+++|++++|++|
T Consensus 28 ~~~~~~a~~~p~~~a~~~~~~~~ty~eL~~~-~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~p 106 (563)
T PRK06710 28 KYVEQMASRYPEKKALHFLGKDITFSVFHDK-VKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNP 106 (563)
T ss_pred HHHHHHHHHCCCceEEEecCeeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccCc
Confidence 5677888999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--CCCC-----------------------c
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--DKPG-----------------------V 137 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-----------------------~ 137 (305)
..+.+++.++++..+++++++++.. ...+....... ....++...... ..+. .
T Consensus 107 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (563)
T PRK06710 107 LYTERELEYQLHDSGAKVILCLDLV-FPRVTNVQSAT-KIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETI 184 (563)
T ss_pred ccCHHHHHHHHhccCCeEEEEeccc-hhhhhccchhh-ccceeEEeccccccccccccccchhhcccccccccccccchh
Confidence 9999999999999999999998753 23322221111 111222110000 0000 0
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCch
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPL 216 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl 216 (305)
..|+.+..... ... .......+++++++|||||||.||+|.+||+++..+...... .++....++++++.+|+
T Consensus 185 ~~~~~~~~~~~----~~~--~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~ 258 (563)
T PRK06710 185 HLWNSVEKEVN----TGV--EVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPF 258 (563)
T ss_pred hhhhhhhhccc----ccc--ccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCch
Confidence 01111111000 000 001123578999999999999999999999999865443222 23331345688999999
Q ss_pred hHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 217 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+|.+|+...++.++..|+++++.+.++ +..+++.++++++|++.++|+++..+++.......+++++|.++++
T Consensus 259 ~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~g 331 (563)
T PRK06710 259 FHVYGMTAVMNLSIMQGYKMVLIPKFD-MKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISG 331 (563)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcCCCC-HHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeC
Confidence 999998776778899999999987665 6899999999999999999999999987655455567888877654
No 89
>PRK07638 acyl-CoA synthetase; Validated
Probab=100.00 E-value=6.4e-33 Score=251.59 Aligned_cols=244 Identities=18% Similarity=0.154 Sum_probs=200.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|++.+++.|+..++.+.++.+||+|+.++ ++++|++|.+.|. +|++|+|+++|+.++++++|||+++|++++|+++
T Consensus 5 ~~~~~~a~~~p~~~a~~~~~~~~Ty~~l~~~-~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 82 (487)
T PRK07638 5 KEYKKHASLQPNKIAIKENDRVLTYKDWFES-VCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDI 82 (487)
T ss_pred HHHHHHHHhCCCCeEEecCCcEeeHHHHHHH-HHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCc
Confidence 5688889999998888888999999999996 9999999999984 7999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++.+++++++++... ...+.. ....++..++ +.+....... .... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~vi~~~~~-~~~~~~------~~~~~~~~~~---------~~~~~~~~~~-~~~~-----~~~ 140 (487)
T PRK07638 83 KWKQDELKERLAISNADMIVTERYK-LNDLPD------EEGRVIEIDE---------WKRMIEKYLP-TYAP-----IEN 140 (487)
T ss_pred cCCHHHHHHHHHhCCCCEEEEeccc-ccchhh------ccceEEEehh---------hhhhhhhccc-cccc-----ccc
Confidence 9999999999999999999998753 122211 0111221111 2222211110 0000 122
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
..+++++|+|||||||.||+|+++|+++..++......+++ ..+|+++...|++|..++ ..++.++..|+++++.+.+
T Consensus 141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~ 218 (487)
T PRK07638 141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHM-KREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKF 218 (487)
T ss_pred CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCc-CCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCC
Confidence 35778999999999999999999999999988887777888 899999999999998765 5588999999999999876
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
. +..+++.++++++|++.++|+++..|.+.
T Consensus 219 ~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 248 (487)
T PRK07638 219 I-PNQVLDKLETENISVMYTVPTMLESLYKE 248 (487)
T ss_pred C-HHHHHHHHHHcCCeEEEeCcHHHHHHHhC
Confidence 5 79999999999999999999999999875
No 90
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=100.00 E-value=1.4e-33 Score=256.91 Aligned_cols=261 Identities=18% Similarity=0.225 Sum_probs=212.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.|.+.+..+|+..++...++.+||+||.++ +.++|..|.+.|+++||+|+++++|+.+++++++||+++|++++|+++
T Consensus 4 ~~l~~~a~~~p~~~a~~~~~~~~ty~el~~~-~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~~ 82 (502)
T TIGR01734 4 EAIQAFAETYPQTIAYRYQGQELTYQQLKEQ-SDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDT 82 (502)
T ss_pred HHHHHHHHHCCCceEEEcCCcEEeHHHHHHH-HHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCCC
Confidence 6788899999998888888999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++..+++.++++.+.. ... .... ++.+.. ...+..... + ... ....
T Consensus 83 ~~~~~~~~~~~~~~~~~~ii~~~~~~-~~~-------~~~~-~~~~~~---------~~~~~~~~~--~-~~~---~~~~ 138 (502)
T TIGR01734 83 SIPSERIEMIIEAAGPELVIHTAELS-IDA-------VGTQ-IITLSA---------LEQAETSGG--P-VSF---DHAV 138 (502)
T ss_pred cChHHHHHHHHHhcCCCEEEeccccc-ccc-------cCCc-eEEchH---------hhhhhhhcC--C-ccc---cccC
Confidence 99999999999999999999987631 111 1111 111110 111111111 0 000 0123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|.+||+++..++......++. ..++++++..|++|..++. .++.++..|+++++.+..
T Consensus 139 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~ 216 (502)
T TIGR01734 139 KGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPL-SEGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCLDKD 216 (502)
T ss_pred CCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCC-CCCceEEeecCceechhHH-HHHHHHHCCCEEEEcCHH
Confidence 57899999999999999999999999999998888888888 8899999999999988774 588999999999998754
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..+..+++.++++++|.+.++|++++.++........++++++.++++
T Consensus 217 ~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~ 266 (502)
T TIGR01734 217 ITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFC 266 (502)
T ss_pred HhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEc
Confidence 236899999999999999999999988876544445567788766554
No 91
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.5e-33 Score=261.62 Aligned_cols=265 Identities=17% Similarity=0.161 Sum_probs=202.4
Q ss_pred hHHHHHHHhcccceeeecc---------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFN---------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~---------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
++|++.++++|+..++.+. .+.+||+||.++ ++++|++|.+. +++||+|+++++|+++++++++||+++
T Consensus 25 ~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~-v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~~~~ 102 (631)
T PRK07769 25 RHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGAR-NRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGALYA 102 (631)
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHH-HHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHHHHc
Confidence 5778888889997777542 147999999996 99999999987 899999999999999999999999999
Q ss_pred CCeEEec-CCCCC--HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC--ccEEEEccCCCCCCCcccHHHHHHhcc
Q psy2835 74 GGFAAGM-YTTNS--PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGR 148 (305)
Q Consensus 74 G~~~v~i-~~~~~--~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~ 148 (305)
|++++|+ ++..+ .+++.++++++++++++++.+. .+.+.+.....+. ...++.++.... .. ..
T Consensus 103 G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~ 170 (631)
T PRK07769 103 GRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDS-AEGVRKFFRARPAKERPRVIAVDAVPD---------EV--GA 170 (631)
T ss_pred CCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHH-HHHHHHHHhhccccccceEEEcccccc---------cc--cc
Confidence 9999999 55554 6889999999999999998763 3444443332221 123332221100 00 00
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 228 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~ 228 (305)
.... ....++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|.+|+.. ++.
T Consensus 171 -~~~~------~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~Pl~h~~gl~~-~~~ 241 (631)
T PRK07769 171 -TWVP------PEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEG-QEGDRGVSWLPFFHDMGLIT-VLL 241 (631)
T ss_pred -ccCC------CCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCC-CCcceEEEeCCCcCchhhHH-HHH
Confidence 0000 12356899999999999999999999999999988887777888 89999999999999999876 566
Q ss_pred HHHhCcEEEEeCCc-c--chhHHHHHhhhcCC---cEEEechHHHHHHHHHH---HH--hhcccChHHHHHHH
Q psy2835 229 VMTVAATLWFADKN-A--LKGSLINTLLEVRP---HVFLAVPRVWEKIHEKL---MA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 229 ~l~~G~~~v~~~~~-~--~~~~~~~~i~~~~v---t~~~~~P~~~~~l~~~~---~~--~~~~~~sl~~~~~~ 290 (305)
++..|+++++.+.. . +|..+++.++++++ |++.++|.++..+.+.. .. ...++++||.++++
T Consensus 242 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~g 314 (631)
T PRK07769 242 PALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNG 314 (631)
T ss_pred HHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEec
Confidence 77789999888642 1 47889999999986 78899999887776531 11 13568888876654
No 92
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=100.00 E-value=3e-33 Score=260.14 Aligned_cols=264 Identities=15% Similarity=0.147 Sum_probs=198.1
Q ss_pred hHHHHHHHhcccceeeecc-------C--CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFN-------A--PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~-------~--~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.+. + +.+||+||.++ ++++|++|.+. +++||+|+++++|+++++++++||+++
T Consensus 38 ~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~-~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~~~a 115 (612)
T PRK12476 38 SLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVR-LRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAAIKA 115 (612)
T ss_pred HHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHH-HHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHHHHc
Confidence 4677788889997776542 1 37999999996 99999999986 999999999999999999999999999
Q ss_pred CCeEEec-CCCCC--HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC--ccEEEEccCCCCCCCcccHHHHHHhcc
Q psy2835 74 GGFAAGM-YTTNS--PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGR 148 (305)
Q Consensus 74 G~~~v~i-~~~~~--~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~ 148 (305)
|++++|+ ++..+ .+++.++++++++++++++++. .+.+.+.....+. ...++.+++.. ....
T Consensus 116 G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~ 182 (612)
T PRK12476 116 GTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAA-AEAVEGFLRNLPRLRRPRVIAIDAIP------------DSAG 182 (612)
T ss_pred CceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHH-HHHHHHHHhhcccccCceEEEecccc------------cccc
Confidence 9999999 57766 7899999999999999998763 3444444333322 22344332211 0000
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-cCCCCceEEEeCchhHHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIY 227 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~~~~~~ 227 (305)
.... .....++++++|+|||||||.||||++||+++..++......++ + .+++++++++|++|..|+.. .+
T Consensus 183 ~~~~------~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~l~~~Pl~h~~g~~~-~~ 254 (612)
T PRK12476 183 ESFV------PVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLL-DRNTHGVSWLPLYHDMGLSM-IG 254 (612)
T ss_pred cccc------CCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccC-CCCceEEEeCCcccccchHH-HH
Confidence 0000 01235689999999999999999999999999988777666666 6 78899999999999999866 44
Q ss_pred HHHHhCcEEEEeCC-cc--chhHHHHHhh--hcCCcEEEechHHHHHHHHHHH----HhhcccChHHHHHHH
Q psy2835 228 SVMTVAATLWFADK-NA--LKGSLINTLL--EVRPHVFLAVPRVWEKIHEKLM----AVGKQTTGVKRWIAN 290 (305)
Q Consensus 228 ~~l~~G~~~v~~~~-~~--~~~~~~~~i~--~~~vt~~~~~P~~~~~l~~~~~----~~~~~~~sl~~~~~~ 290 (305)
.++..|+++++... .. +|..+++.++ ++++|++..+|+++..+++... ....+++++| ++++
T Consensus 255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~g 325 (612)
T PRK12476 255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIG 325 (612)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEec
Confidence 55555666655543 21 4789999995 5899999999999888876421 1234677887 5444
No 93
>PRK13383 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=3.8e-33 Score=254.80 Aligned_cols=271 Identities=15% Similarity=0.137 Sum_probs=208.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.+.+.++++|+..++.++++.+||+|+.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 39 ~~~~~~a~~~p~~~a~~~~~~~lTy~el~~~-~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl~~ 117 (516)
T PRK13383 39 TLLAVTAARWPGRTAIIDDDGALSYRELQRA-TESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPIST 117 (516)
T ss_pred HHHHHHHHHCCCCcEEEeCCCcEeHHHHHHH-HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEcCc
Confidence 3466778889998888778889999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.+++++++++.+++++.. .+.+..... .++.++.. ...... .... +.
T Consensus 118 ~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~------~~~~~~~~--------~~~~~~----~~~~-------p~ 171 (516)
T PRK13383 118 EFRSDALAAALRAHHISTVVADNEF-AERIAGADD------AVAVIDPA--------TAGAEE----SGGR-------PA 171 (516)
T ss_pred cCCHHHHHHHHhcCCCCEEEEchhH-HHHHHhhhc------ceEEeccc--------hhhhhc----CCCC-------CC
Confidence 9999999999999999999998763 333332211 12222111 000000 0000 11
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHH--HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITF--NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
..++.++|+|||||||.||+|.+||..... ........+++ ..+|+++..+|++|.+|+.. ++.++..|+++++..
T Consensus 172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~~~~ 249 (516)
T PRK13383 172 VAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRL-RTGSRISVAMPMFHGLGLGM-LMLTIALGGTVLTHR 249 (516)
T ss_pred CCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhcc-CCCCeEEEecCCcchhhHHH-HHHHHhcCCEEEECC
Confidence 245678999999999999999999984322 12223345567 88999999999999999865 788899999999887
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
..+ +..+++.++++++|.+.++|+++..+.+..+. ...+++++|.++++ +.+.+|.++++.|
T Consensus 250 ~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~Y 324 (516)
T PRK13383 250 HFD-AEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGY 324 (516)
T ss_pred CCC-HHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcc
Confidence 765 68999999999999999999999999875432 12346677655433 3445777887766
No 94
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=100.00 E-value=2.1e-33 Score=282.58 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=207.0
Q ss_pred hHHHHHHHhcccceeeec---------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGF---------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
+++++.++++|+..++.+ .++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++
T Consensus 240 ~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~-~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~l~~ 318 (1389)
T TIGR03443 240 DIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEA-SNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKA 318 (1389)
T ss_pred HHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 568889999999777753 4578999999996 999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHH--HHHHHHHhcc----CCCccEEEEccCCCCCCCcccH--HHHHH
Q psy2835 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--LEKILKVKAQ----CPKLKAIVQYEGKPDKPGVISW--DELME 145 (305)
Q Consensus 74 G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~--~~l~~ 145 (305)
|++++|++|.++.+++.++++++++++++++.... ...+...... ......+...++.....+.... .+...
T Consensus 319 G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1389)
T TIGR03443 319 GATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETDVLA 398 (1389)
T ss_pred CcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccccccccccc
Confidence 99999999999999999999999999999875410 1111111110 0111111111110000000000 01100
Q ss_pred hccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHH
Q psy2835 146 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVD 225 (305)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~ 225 (305)
......... ......++++++|+|||||||.||||+++|+++.+.+......+++ .++|++++..|++|..+. ..
T Consensus 399 ~~~~~~~~~---~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~~~~~d~~~-~~ 473 (1389)
T TIGR03443 399 PYQALKDTP---TGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGL-SENDKFTMLSGIAHDPIQ-RD 473 (1389)
T ss_pred cccccccCC---CCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC-CCCCEEEEecCceecchH-HH
Confidence 000000000 0012357899999999999999999999999999999888888888 999999999999997654 66
Q ss_pred HHHHHHhCcEEEEeCCcc--chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 226 IYSVMTVAATLWFADKNA--LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 226 ~~~~l~~G~~~v~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.++..|+++++++... .+..+++.+++++||++.++|++++.|.... ..++++||.++++
T Consensus 474 i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~g 537 (1389)
T TIGR03443 474 MFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFV 537 (1389)
T ss_pred HHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEe
Confidence 999999999999987543 3678999999999999999999999886532 3457778766554
No 95
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=2.5e-33 Score=299.84 Aligned_cols=260 Identities=16% Similarity=0.184 Sum_probs=213.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++++||+||.++ ++++|+.|.+.|+++|++|+++++|++++++++|||+++|++++|++|
T Consensus 3099 ~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~vpld~ 3177 (3956)
T PRK12467 3099 QLIEAQVARTPEAPALVFGDQQLSYAELNRR-ANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177 (3956)
T ss_pred HHHHHHHHhCCCcceEeeCCcccCHHHHHHH-HHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEeecCCC
Confidence 5788899999999988899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... .+.+. .... ...+.++.. ..... ....+ ....
T Consensus 3178 ~~p~~rl~~il~~~~~~~vlt~~~~-~~~~~----~~~~-~~~~~~~~~------------~~~~~-~~~~~----~~~~ 3234 (3956)
T PRK12467 3178 EYPRERLAYMIEDSGVKLLLTQAHL-LEQLP----APAG-DTALTLDRL------------DLNGY-SENNP----STRV 3234 (3956)
T ss_pred CChHHHHHHHHhCCCCcEEEechhh-hhhcc----cccC-Cceeeecch------------hhccc-CCCCC----cccC
Confidence 9999999999999999999998652 12211 0111 111212111 00000 00000 1234
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +++|++++..|++|..+ ++.++.+|..|+++++.+..
T Consensus 3235 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~~~ 3312 (3956)
T PRK12467 3235 MGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYEL-DANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRDND 3312 (3956)
T ss_pred CCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCC-CcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECCcc
Confidence 67999999999999999999999999999999998899999 99999999999999766 56699999999999999841
Q ss_pred -cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 -ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 -~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.++..+++.++++++|++.++|+++..+++.. ...++++||.++++
T Consensus 3313 ~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~g 3359 (3956)
T PRK12467 3313 LWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFG 3359 (3956)
T ss_pred cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEe
Confidence 34789999999999999999999999997643 23467788876665
No 96
>PRK13391 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.4e-32 Score=250.73 Aligned_cols=271 Identities=17% Similarity=0.197 Sum_probs=210.0
Q ss_pred HHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 6 KLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
...++++|++.++.+ +++.+||+||.++ +++++.+|.+.|+++|++|+++++|+++++++++||+++|++++++++.
T Consensus 4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~-~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~ 82 (511)
T PRK13391 4 GIHAQTTPDKPAVIMASTGEVVTYRELDER-SNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82 (511)
T ss_pred hhhHhhCCCceEEEecCCCCEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccc
Confidence 456788899777655 5678999999995 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccC
Q psy2835 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 163 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (305)
.+.+++.++++..+++.++++... ...+.++...++.....+...+.........+++.... .+... ...
T Consensus 83 ~~~~~l~~~l~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~ 152 (511)
T PRK13391 83 LTPAEAAYIVDDSGARALITSAAK-LDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAG---LPATP------IAD 152 (511)
T ss_pred cCHHHHHHHHhccCCcEEEEchhh-HHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcC---CCCCC------CCC
Confidence 999999999999999999999874 45555565555555555545432222333334443321 11111 123
Q ss_pred CCceeEEEeccCCCCCCcceEec--hhHHHHH---HHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLS--HDNITFN---AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s--~~~l~~~---~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++|||||||.||+|.++ |.++... .......+++ .+++++++..|++|..++.. .+.++..|+++++
T Consensus 153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~ 230 (511)
T PRK13391 153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGF-RSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIV 230 (511)
T ss_pred cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCC-CCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEE
Confidence 45678999999999999999964 6665432 2334455667 88899999999999988765 6788999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
.+... +..+++.++++++|++.++|+++..+.+.... ...+++++|.++.+
T Consensus 231 ~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~g 283 (511)
T PRK13391 231 MEHFD-AEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHA 283 (511)
T ss_pred CCCCC-HHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEc
Confidence 98765 79999999999999999999999988764322 23457777766543
No 97
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.1e-32 Score=252.23 Aligned_cols=293 Identities=19% Similarity=0.203 Sum_probs=215.4
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|.+|. +.|+++||+|+++++|+.++++++|||+++|++++|++
T Consensus 27 ~~l~~~a~~~p~~~a~~~~~~~lTy~~l~~~-~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 105 (560)
T PRK08974 27 DMFEQAVARYADQPAFINMGEVMTFRKLEER-SRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVN 105 (560)
T ss_pred HHHHHHHHhCCCCceEEECCccccHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccC
Confidence 5678888999998888788899999999995 999999998 48999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC------------------------CCc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK------------------------PGV 137 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~ 137 (305)
|..+.+++.++++..+++.++++.+. .+.+.++.... ....++........ +..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (560)
T PRK08974 106 PLYTPRELEHQLNDSGAKAIVIVSNF-AHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDA 183 (560)
T ss_pred ccCCHHHHHHHHHhcCceEEEEeccc-cHHHHHHhhhc-CcceEEEecccccccccccccccchhhhcccccccccCCCc
Confidence 99999999999999999999998763 24444333222 12222211100000 001
Q ss_pred ccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc--cCCCCceEEEeCc
Q psy2835 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLP 215 (305)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~p 215 (305)
.++.+.......... .......+++++|+|||||||.||+|.++|.++..++......+. ....++.++..+|
T Consensus 184 ~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p 258 (560)
T PRK08974 184 ISFRSALHKGRRMQY-----VKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALP 258 (560)
T ss_pred ccHHHHhhccCCCCC-----CCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCc
Confidence 111222111110000 001235789999999999999999999999999887655433332 1045678899999
Q ss_pred hhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----
Q psy2835 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----- 290 (305)
Q Consensus 216 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----- 290 (305)
++|.+++....+..+..|+++++......+..+++.++++++|++.++|++++.+.+.......+++++|.++.+
T Consensus 259 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~ 338 (560)
T PRK08974 259 LYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQ 338 (560)
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCC
Confidence 999999877778888899998877544446889999999999999999999999987654444556677655433
Q ss_pred ------HHHHhhhHHHhhh
Q psy2835 291 ------YAKSTSLQHYMAY 303 (305)
Q Consensus 291 ------~a~~~g~~~~~~~ 303 (305)
|....|+++++.|
T Consensus 339 ~~~~~~~~~~~g~~~~~~Y 357 (560)
T PRK08974 339 QAVAERWVKLTGQYLLEGY 357 (560)
T ss_pred HHHHHHHHHHhCCcEEeee
Confidence 3333566666655
No 98
>PRK12467 peptide synthase; Provisional
Probab=100.00 E-value=4.3e-33 Score=298.08 Aligned_cols=263 Identities=16% Similarity=0.164 Sum_probs=213.6
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 1578 ~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~vpldp 1656 (3956)
T PRK12467 1578 QLIEDQAAATPEAVALVFGEQELTYGELNRR-ANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDP 1656 (3956)
T ss_pred HHHHHHHHhCCCCeEEEeCCcEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCceeeecCC
Confidence 5788899999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... ...+ ....... ++.++... ++......... ....
T Consensus 1657 ~~p~~rl~~il~~~~~~~~l~~~~~-~~~~----~~~~~~~-~~~~~~~~---------~~~~~~~~~~~------~~~~ 1715 (3956)
T PRK12467 1657 EYPRERLAYMIEDSGIELLLTQSHL-QARL----PLPDGLR-SLVLDQED---------DWLEGYSDSNP------AVNL 1715 (3956)
T ss_pred CCCHHHHHHHHHhCCCCEEEeChhh-hhhC----ccccCCc-EEEecccc---------chhccCCCCCC------CCCC
Confidence 9999999999999999999998652 1111 1111111 22222110 11111100000 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +.+|++++..|++|..+. +.++.++..|+++++.+..
T Consensus 1716 ~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~ 1793 (3956)
T PRK12467 1716 APQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQL-SAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPPG 1793 (3956)
T ss_pred CCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCC-CcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcChh
Confidence 67899999999999999999999999999999988888899 999999999999997775 5699999999999998753
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
.+|..+++.++++++|++.++|++++.|++.. ....++++||.++++
T Consensus 1794 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~~~~~~lr~v~~g 1842 (3956)
T PRK12467 1794 AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMD-EQVEHPLSLRRVVCG 1842 (3956)
T ss_pred hcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhc-cccccCCCceEEEEc
Confidence 23789999999999999999999999998752 223457788876655
No 99
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=3.5e-33 Score=300.91 Aligned_cols=264 Identities=14% Similarity=0.124 Sum_probs=212.8
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++++||+||.++ ++++|+.|.+.|+++|++|+++++++.+++++++|++++|++++|++|
T Consensus 3724 ~~~~~~~~~~p~~~Av~~~~~~~tY~eL~~~-~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~ 3802 (4334)
T PRK05691 3724 RLFEAQVAAHPQRIAASCLDQQWSYAELNRA-ANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDP 3802 (4334)
T ss_pred HHHHHHHHhCCCceEEEcCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCC
Confidence 5788899999999999999999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCC--ccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK--LKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
.++.+.+.++++++++++++++... ......+...... ...++..++ .......... ...
T Consensus 3803 ~~p~~r~~~il~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-----~~~ 3864 (4334)
T PRK05691 3803 GLPAQRLQRIIELSRTPVLVCSAAC-REQARALLDELGCANRPRLLVWEE------------VQAGEVASHN-----PGI 3864 (4334)
T ss_pred CChHHHHHHHHHhcCCCEEEecCcc-cchhhhhhcccccccccceeeecc------------cccccccccC-----CCC
Confidence 9999999999999999999998763 2222222222211 111111111 1000000000 012
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
...++++++|+|||||||+||||+++|+++.+.+......+++ +++|+++...|++|..+ ++.++.++..|+++++++
T Consensus 3865 ~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~ 3942 (4334)
T PRK05691 3865 YSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLAL-SEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVP 3942 (4334)
T ss_pred CCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCC-CccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcC
Confidence 3467999999999999999999999999999999998889999 99999999999999665 577999999999999987
Q ss_pred Ccc--chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 241 KNA--LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 241 ~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
... +|..+++.++++++|++.++|+++..+++. ....+++||.++++
T Consensus 3943 ~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~---~~~~~~~lr~~~~g 3991 (4334)
T PRK05691 3943 NAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAE---DRQALDGLRWMLPT 3991 (4334)
T ss_pred ccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhh---ccccCCCceEEEec
Confidence 542 368899999999999999999999988754 22346677765543
No 100
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=100.00 E-value=1.4e-32 Score=250.27 Aligned_cols=261 Identities=17% Similarity=0.213 Sum_probs=211.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.+..+|+..++.+.++.+||+||.++ ++++|..|.+.|+++|++|+++++|+.++++++|||++.|++++|+++
T Consensus 6 ~~l~~~a~~~p~~~~~~~~~~~~t~~~l~~~-~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~ 84 (503)
T PRK04813 6 ETIEEFAQTQPDFPAYDYLGEKLTYGQLKED-SDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDV 84 (503)
T ss_pred HHHHHHHHhCCCceEEEeCCcEEeHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCC
Confidence 6788889999998888888899999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+++.++++..++++++++.+.. ...... ..+ .++++........... .....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~------------~~~~~~~~~~~~~~~~---~~~~~ 140 (503)
T PRK04813 85 SSPAERIEMIIEVAKPSLIIATEELP--------LEILGI-PVI------------TLDELKDIFATGNPYD---FDHAV 140 (503)
T ss_pred CChHHHHHHHHHhcCCCEEEeccccc--------ccccCC-cEE------------ehHHhhhhhhcccccc---ccccC
Confidence 99999999999999999999987631 000011 111 1222221110000000 00123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++++|||||||.||+|.+||+++..........+++ ..++++++..|++|..+.. .++.++..|+++++.+..
T Consensus 141 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~v~~~~~ 218 (503)
T PRK04813 141 KGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFAL-PEGPQFLNQAPYSFDLSVM-DLYPTLASGGTLVALPKD 218 (503)
T ss_pred CCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCC-CcCceeeecCCcchhHhHH-HHHHHHhcCCEEEEcChh
Confidence 56889999999999999999999999999988887777888 8999999999999988864 488999999999988763
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..+..+++.++++++|++..+|++++.++........+++++|.++++
T Consensus 219 ~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~ 268 (503)
T PRK04813 219 MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFC 268 (503)
T ss_pred hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEe
Confidence 236889999999999999999999998876655555667788766543
No 101
>PRK07868 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.1e-32 Score=263.93 Aligned_cols=268 Identities=9% Similarity=0.070 Sum_probs=200.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.++++.+||+||.++ ++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|++|
T Consensus 451 ~ll~~~a~~~pd~~Al~~~~~~lTY~eL~~r-a~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p 529 (994)
T PRK07868 451 RIIAEQARDAPKGEFLLFDGRVHTYEAVNRR-INNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPP 529 (994)
T ss_pred HHHHHHHHHCCCCeEEEeCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence 5788899999998888888899999999996 999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCC----C---CcccHHHHHHhccCCCCchh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDK----P---GVISWDELMELGRAAPDESL 155 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~ 155 (305)
. +++.+++++++++++|++.+. .+.+.+. ...+++++..... . ....++++.... ......
T Consensus 530 ~---~~l~~il~~s~~~~li~~~~~-~~~~~~~------~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 597 (994)
T PRK07868 530 D---TDLAAAVRLGGVTEIITDPTN-LEAARQL------PGRVLVLGGGESRDLDLPDDADVIDMEKIDPDA--VELPGW 597 (994)
T ss_pred c---hhHHHHHhccCCeEEEEChHH-HHHHHhc------CceEEEecCCccccccCCcchhhhhhhhcCccc--ccCCcc
Confidence 5 689999999999999998663 3433221 1334444321100 0 001111110000 000000
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
. ......++++++|+|| ||||.||++.++|.+...........+++ .++|++++.+|++|.+|+...++..+..|++
T Consensus 598 ~-~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l-~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~ 674 (994)
T PRK07868 598 Y-RPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAAL-DRRDTVYCLTPLHHESGLLVSLGGAVVGGSR 674 (994)
T ss_pred c-CCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCC-CCCCeEEEecChHHHhHHHHHHHHHhccceE
Confidence 0 0011235899999999 68888888888887766555555556777 8999999999999999987656666666667
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
+++.+.++ ++.+++.|++++||++.++|+++..|++.......++++||.+
T Consensus 675 vvl~~~~~-~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~ 725 (994)
T PRK07868 675 IALSRGLD-PDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLF 725 (994)
T ss_pred EEecCCCC-HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEE
Confidence 76766554 7999999999999999999999999987644444556677754
No 102
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=6.5e-33 Score=300.85 Aligned_cols=262 Identities=17% Similarity=0.208 Sum_probs=215.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++.+||+||.++ ++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 4555 ~l~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~aG~~~vpldp 4633 (5163)
T PRK12316 4555 QLVAERARMTPDAVAVVFDEEKLTYAELNRR-ANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDP 4633 (5163)
T ss_pred HHHHHHHHhCCCCeEEEeCCceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEEecCCC
Confidence 5788899999999999889999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... ...+ ....... .+.++.. .++ .... ... .....
T Consensus 4634 ~~p~~rl~~il~~~~~~~vl~~~~~-~~~~----~~~~~~~-~~~~~~~---------~~~-~~~~--~~~----~~~~~ 4691 (5163)
T PRK12316 4634 EYPRERLAYMMEDSGAALLLTQSHL-LQRL----PIPDGLA-SLALDRD---------EDW-EGFP--AHD----PAVRL 4691 (5163)
T ss_pred CChHHHHHHHHHhcCCCEEEechhh-hhhc----ccccCcc-eEeecch---------hhc-ccCC--ccC----CccCC
Confidence 9999999999999999999998652 1221 1111111 1111110 000 0000 000 01234
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +++|++++..|++|..+. +.++.++..|+++++.+..
T Consensus 4692 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~ 4769 (5163)
T PRK12316 4692 HPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYEL-TPDDRVLQFMSFSFDGSH-EGLYHPLINGASVVIRDDS 4769 (5163)
T ss_pred CCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCC-CcCCeEEEecCcchhhHH-HHHHHHHhCCCEEEEcCcc
Confidence 67999999999999999999999999999999998888999 999999999999997765 6699999999999998764
Q ss_pred c-chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 A-LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 ~-~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
. ++..+++.+++++||++.++|++++.|.+...... ++++||.++++
T Consensus 4770 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-~~~~lr~v~~g 4817 (5163)
T PRK12316 4770 LWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYCFG 4817 (5163)
T ss_pred cCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc-CCCCccEEEEe
Confidence 4 57999999999999999999999999987654332 67888877665
No 103
>PRK09192 acyl-CoA synthetase; Validated
Probab=100.00 E-value=1.7e-32 Score=253.67 Aligned_cols=267 Identities=15% Similarity=0.124 Sum_probs=203.7
Q ss_pred hhHHHHHHHhcccceeeeccC---CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 2 KAFLKLGLERYHSVCIIGFNA---PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~~---~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
.++|+..++++|+..+++..+ +.+||+||.++ +.++|.+|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~-~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v 102 (579)
T PRK09192 24 VEALDYAALGEAGMNFYDRRGQLEEALPYQTLRAR-AEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPV 102 (579)
T ss_pred HHHHHHhhccCCceEEEecCCCEEEEecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeE
Confidence 467888888888888775433 56999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCC-------HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 79 GMYTTNS-------PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 79 ~i~~~~~-------~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
|+++..+ .+++.++++.++++++++++.. .+.+.+...... . .. ..+++++........
T Consensus 103 ~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~-~~~~~~~~~~~~-~--~~----------~~~~~~~~~~~~~~~ 168 (579)
T PRK09192 103 PLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDEL-LPWVNEATHGNP-L--LH----------VLSHAWFKALPEADV 168 (579)
T ss_pred eccCCcccccchHHHHHHHHHHHhcCCCEEEeChHH-HHHHHHhhcccc-c--cc----------eeehhhhcccCCCcc
Confidence 9987543 6899999999999999998763 344443321111 1 11 112333322111100
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH-hhccCCCCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.. ....++++++|+|||||||.||+|.+||+++..+...... .+++ .++|++++++|++|.+|+...++.++
T Consensus 169 ~~------~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l 241 (579)
T PRK09192 169 AL------PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKV-RPGDRCVSWLPFYHDMGLVGFLLTPV 241 (579)
T ss_pred cc------CCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccC-CCCCeEEEeCCCCCcchhHHHHHHHH
Confidence 00 1235689999999999999999999999999998877766 6788 89999999999999999887778889
Q ss_pred HhCcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHHHH---HhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM---AVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~~~sl~~~~~~ 290 (305)
..|+++++.+... .|..+++.+.++++|+++..|..+..+..... ....+++++|.++.+
T Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~g 307 (579)
T PRK09192 242 ATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIG 307 (579)
T ss_pred HhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEec
Confidence 9999998776321 26889999999999987776666666554322 123467777766554
No 104
>PRK12316 peptide synthase; Provisional
Probab=100.00 E-value=1.1e-32 Score=299.23 Aligned_cols=262 Identities=16% Similarity=0.160 Sum_probs=214.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.++++++||+||.++ ++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 515 ~~~~~~a~~~p~~~A~~~~~~~~TY~eL~~~-~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~vpld~ 593 (5163)
T PRK12316 515 RLFEEQVERTPEAPALAFGEETLDYAELNRR-ANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDP 593 (5163)
T ss_pred HHHHHHHHHCCCCeEEEeCCceEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEeccCc
Confidence 6788999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... ...+ ...... .++.++... ........... ....
T Consensus 594 ~~p~~rl~~il~~~~~~~~l~~~~~-~~~~----~~~~~~-~~~~~~~~~---------~~~~~~~~~~~------~~~~ 652 (5163)
T PRK12316 594 EYPAERLAYMLEDSGVQLLLSQSHL-GRKL----PLAAGV-QVLDLDRPA---------AWLEGYSEENP------GTEL 652 (5163)
T ss_pred cCcHHHHHHHHHhCCCCEEEEChhh-hhhC----CcccCc-eEEEecCcc---------hhhccCCCCCC------CCCC
Confidence 9999999999999999999998753 1111 111111 222222110 00111100000 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
.++++++|+|||||||.||||+++|+++.+.+......+++ +.+|++++..|++|..+. +.++.++..|+++++.+.
T Consensus 653 ~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~~ 730 (5163)
T PRK12316 653 NPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGL-GVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAPG 730 (5163)
T ss_pred CCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCC-CCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCcc
Confidence 67899999999999999999999999999999998899999 999999999999998886 559999999999999864
Q ss_pred -ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 242 -NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 242 -~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..++..+++.+++++||++.++|++++.|++.. ...+++++|.++++
T Consensus 731 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~--~~~~~~~l~~~~~g 778 (5163)
T PRK12316 731 DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE--DVASCTSLRRIVCS 778 (5163)
T ss_pred ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc--ccccCCCccEEEEe
Confidence 233789999999999999999999999998643 23457788876665
No 105
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=100.00 E-value=1.6e-32 Score=251.05 Aligned_cols=259 Identities=17% Similarity=0.139 Sum_probs=192.2
Q ss_pred hHHHHHHHhcccceeeeccC----CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGFNA----PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~----~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
+.|+..++++|+..++.+.+ +++||+||.++ ++++|+.|.++ ++||+|+++++|+++++++++||+++|++++
T Consensus 6 ~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~-~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~ 82 (525)
T PRK05851 6 AALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGR-AENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS 82 (525)
T ss_pred HHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHH-HHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc
Confidence 46788888999977776665 68999999996 99999999988 7999999999999999999999999999865
Q ss_pred ecCC-------CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 79 GMYT-------TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 79 ~i~~-------~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
+++. ....+++.+++++++++++++++.. ...+.+.... +.+.+ +... .....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~-------~~~~~---------~~~~---~~~~~ 142 (525)
T PRK05851 83 ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSH-LERLRAVDSS-------VTVHD---------LATA---AHTNR 142 (525)
T ss_pred CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHH-HHHHHHhhcc-------ccccc---------cccc---ccccc
Confidence 4431 1233556678899999999998763 2333322111 00100 0000 00000
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCC-CCceEEEeCchhHHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES-AALSVISFLPLSHIAAQTVDIYSVM 230 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~l~~~pl~~~~g~~~~~~~~l 230 (305)
.... ....++++++|+|||||||.||||++||+++..++......+++ . ++|++++.+|++|.+|+.. ++.++
T Consensus 143 ~~~~----~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~d~~l~~~pl~h~~g~~~-~~~~l 216 (525)
T PRK05851 143 SASL----TPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGL-DAATDVGCSWLPLYHDMGLAF-LLTAA 216 (525)
T ss_pred cccC----CCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCC-CCCCCeEEEcCCCccCccHHH-HHHHH
Confidence 0000 12356899999999999999999999999999998888888888 8 8999999999999999864 88999
Q ss_pred HhCcEEEEeCC--cc-chhHHHHHhhhcCCcEEEechHHHHHHHHHHH-HhhcccChHHHHHHH
Q psy2835 231 TVAATLWFADK--NA-LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM-AVGKQTTGVKRWIAN 290 (305)
Q Consensus 231 ~~G~~~v~~~~--~~-~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~~sl~~~~~~ 290 (305)
..|+++++.+. +. .|..+++.++++++|++..+|.++..+.+... ....++++||.++++
T Consensus 217 ~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~g 280 (525)
T PRK05851 217 LAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNG 280 (525)
T ss_pred HcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEec
Confidence 99999999873 21 36789999999999987555555555443322 234457888877665
No 106
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=100.00 E-value=2e-32 Score=246.48 Aligned_cols=253 Identities=17% Similarity=0.192 Sum_probs=201.2
Q ss_pred HHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC
Q psy2835 5 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84 (305)
Q Consensus 5 l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~ 84 (305)
.+..++++|+..++.++++.+||+||.++ ++++|+.|.+.|+.+||+|+++++|+++++++++||+++|++++|+++..
T Consensus 9 ~~~~a~~~~~~~a~~~~~~~~ty~el~~~-~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~~~~ 87 (458)
T PRK09029 9 WRHWAQVRPQAIALRLNDEVLTWQQLCAR-IDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQL 87 (458)
T ss_pred HHHHHHhCCCceeeecCCcceeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecCCCC
Confidence 35567889998888888999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCC
Q psy2835 85 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164 (305)
Q Consensus 85 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 164 (305)
+.+++..++++.++++++++++.. ....+ .... .. ....... ....+
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-------~~~~-------------~~----~~~~~~~-------~~~~~ 134 (458)
T PRK09029 88 PQPLLEELLPSLTLDFALVLEGEN--TFSAL-------TSLH-------------LQ----LVEGAHA-------VAWQP 134 (458)
T ss_pred CHHHHHHHHHhcCCCEEEEcCccc--chhhc-------cccc-------------cc----cccccCc-------ccCCC
Confidence 999999999999999999987631 11100 0000 00 0000000 12357
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL 244 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~ 244 (305)
+++++++|||||||.||+|.+||+++...+......+++ .++|+++..+|++|.+|+.. ++.++..|+++++.+.
T Consensus 135 ~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~~v~~~~~--- 209 (458)
T PRK09029 135 QRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPF-TAQDSWLLSLPLFHVSGQGI-VWRWLYAGATLVVRDK--- 209 (458)
T ss_pred CCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCC-CccceEEEecCcHhhhhhHH-HHHHHhCCceEEeCCh---
Confidence 899999999999999999999999999998888888888 89999999999999999854 7788999999998875
Q ss_pred hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 245 KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 245 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
..+++.+ +++|.+..+|+++..+++.... ..++|.++++ +..+.|+++++.|
T Consensus 210 -~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~Y 271 (458)
T PRK09029 210 -QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGY 271 (458)
T ss_pred -HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHcCCcEeccc
Confidence 3456666 3799999999999988875432 2345544332 3344577777665
No 107
>PRK05850 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.3e-32 Score=252.92 Aligned_cols=266 Identities=18% Similarity=0.191 Sum_probs=195.7
Q ss_pred hhHHHHHHHhcccceeeecc---------CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHH
Q psy2835 2 KAFLKLGLERYHSVCIIGFN---------APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~~---------~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~ 72 (305)
.++|++.+..+|+..++.+. .+++||+||..+ +.++|++|.+.| .+||+|+++++|+++++++++||++
T Consensus 4 ~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~-v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~~ 81 (578)
T PRK05850 4 PSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRR-TLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGALQ 81 (578)
T ss_pred HHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHH-HHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHHH
Confidence 36788889999997776542 268999999996 999999999999 6899999999999999999999999
Q ss_pred cCCeEEecCC---CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC--CccEEEEccCCCCCCCcccHHHHHHhc
Q psy2835 73 AGGFAAGMYT---TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP--KLKAIVQYEGKPDKPGVISWDELMELG 147 (305)
Q Consensus 73 ~G~~~v~i~~---~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~ 147 (305)
+|++++|+++ ..+.+++.++++++++++++++++. .+.+.+...... ....++.++.. ++. .
T Consensus 82 ~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~ 148 (578)
T PRK05850 82 AGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAV-VDDVTEYVAPQPGQSAPPVIEVDLL----------DLD--S 148 (578)
T ss_pred cCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHH-HHHHHHHHhhcccccccceEeeccc----------ccc--c
Confidence 9999999997 5578999999999999999998763 344433221111 11112211110 000 0
Q ss_pred cCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh-c-----cCCCCceEEEeCchhHHHH
Q psy2835 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-K-----LESAALSVISFLPLSHIAA 221 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~-----~~~~~~~~l~~~pl~~~~g 221 (305)
..... ......+++++|+|||||||.||||++||+++..++......+ . . ..++++++++|++|..|
T Consensus 149 ~~~~~------~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 149 PRGSD------ARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVP-PPDTTVVSWLPFYHDMG 221 (578)
T ss_pred CCccc------cCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCC-CCcceEEEECCCCCCch
Confidence 00000 0123568999999999999999999999999998776654432 2 2 45789999999999999
Q ss_pred HHHHHHHHHHhCcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHH-HHHHHHHH---HHhhcccChHHHHHHH
Q psy2835 222 QTVDIYSVMTVAATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRV-WEKIHEKL---MAVGKQTTGVKRWIAN 290 (305)
Q Consensus 222 ~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~-~~~l~~~~---~~~~~~~~sl~~~~~~ 290 (305)
++..++.++..|+++++.+... .|..+++.+++++++++ .+|.. +..+.... .....+++++|.++.+
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~g 296 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISG 296 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEEC
Confidence 9888999999999999987532 37899999999999865 55554 44443321 1123456677654433
No 108
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=1.2e-31 Score=244.25 Aligned_cols=272 Identities=18% Similarity=0.160 Sum_probs=207.0
Q ss_pred eeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhh
Q psy2835 16 CIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVT 95 (305)
Q Consensus 16 ~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~ 95 (305)
.++.+.++.+||+||.++ +++++++|.+.|+++||+|+++++|+.+++++++||+++|++++|+++..+.+++.+++++
T Consensus 3 ~~~~~~~~~~ty~el~~~-v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~ 81 (502)
T PRK08276 3 VIMAPSGEVVTYGELEAR-SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD 81 (502)
T ss_pred eEecCCCcEEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence 455678899999999995 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeChHHHHHHHHHhccCC-CccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEecc
Q psy2835 96 SDANICVVEDDKQLEKILKVKAQCP-KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTS 174 (305)
Q Consensus 96 ~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 174 (305)
++++++++++.. .+.+.+.....+ ....++..... ......+++...... .. .....+++++++|||
T Consensus 82 ~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~------~~~~~~~~a~i~~TS 149 (502)
T PRK08276 82 SGAKVLIVSAAL-ADTAAELAAELPAGVPLLLVVAGP--VPGFRSYEEALAAQP---DT------PIADETAGADMLYSS 149 (502)
T ss_pred CCCCEEEEccch-hhHHHHHhhhccccccEEEEeCCC--CCccccHHHHHhcCC---CC------CCCCCCcceEEEECC
Confidence 999999998764 344444444443 34444433221 122334554433211 10 123557789999999
Q ss_pred CCCCCCcceEechhHHHHHH------HHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHH
Q psy2835 175 GTEGASKPVMLSHDNITFNA------ACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSL 248 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~------~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 248 (305)
||||.||+|+++|.++.... ......... ..++++++..|++|..++.. .+.++..|+++++.+... +..+
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~-~~~~ 226 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYG-GPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFD-AEEA 226 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccC-CCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCC-HHHH
Confidence 99999999999988765432 111222223 46789999999999998866 567999999999888765 7999
Q ss_pred HHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHHH-----------HHHhhhHHHhhh
Q psy2835 249 INTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIANY-----------AKSTSLQHYMAY 303 (305)
Q Consensus 249 ~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~~-----------a~~~g~~~~~~~ 303 (305)
++.++++++|++.++|+++..+++.... ...+++++|.+++++ ...+|..+++.|
T Consensus 227 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~y 294 (502)
T PRK08276 227 LALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYY 294 (502)
T ss_pred HHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhc
Confidence 9999999999999999999999876532 244677887665542 223566666665
No 109
>PRK07787 acyl-CoA synthetase; Validated
Probab=100.00 E-value=3.1e-32 Score=246.09 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=199.9
Q ss_pred HhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 10 ERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 10 ~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
+..++..++.++++++||+||.++ ++++|..|. ++|+|+++++|+++++++++||+++|++++|+++..+.+++
T Consensus 11 ~~~~~~~a~~~~~~~~Ty~el~~~-~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l 84 (471)
T PRK07787 11 AAADIADAVRIGGRVLSRSDLAGA-ATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAER 84 (471)
T ss_pred cccCCceEEEeCCcEEEHHHHHHH-HHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHH
Confidence 344556777788999999999996 999999886 47999999999999999999999999999999999999999
Q ss_pred HHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeE
Q psy2835 90 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCT 169 (305)
Q Consensus 90 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (305)
.++++++++++++++.+.. ....+...... . ...+ ... ....++++++
T Consensus 85 ~~~l~~~~~~~il~~~~~~-------~~~~~~~~~~~--~-------~~~~----------~~~------~~~~~~~~a~ 132 (471)
T PRK07787 85 RHILADSGAQAWLGPAPDD-------PAGLPHVPVRL--H-------ARSW----------HRY------PEPDPDAPAL 132 (471)
T ss_pred HHHHHhcCCCEEEecCCcc-------cccccceeeec--c-------cccc----------ccC------CCCCCCceEE
Confidence 9999999999999976410 00111110000 0 0000 000 1235689999
Q ss_pred EEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHH
Q psy2835 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249 (305)
Q Consensus 170 i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 249 (305)
++|||||||.||+|.+||+++..++......+++ ..+|++++.+|++|.+|+...++.++..|+++++.+... +..++
T Consensus 133 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~ 210 (471)
T PRK07787 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQW-TADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPT-PEAYA 210 (471)
T ss_pred EEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCC-CccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCC-HHHHH
Confidence 9999999999999999999999998888888888 899999999999999999888999999999999987765 79999
Q ss_pred HHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 250 NTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 250 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.++ +++|++.++|+++..+.+.... ..+++++|.++.+ +...+|.++++.|
T Consensus 211 ~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~Y 273 (471)
T PRK07787 211 QALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERY 273 (471)
T ss_pred HHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcCCCeeccc
Confidence 9999 9999999999999999874322 2345666644322 3334666666655
No 110
>PRK13390 acyl-CoA synthetase; Provisional
Probab=100.00 E-value=1.4e-31 Score=243.56 Aligned_cols=264 Identities=16% Similarity=0.155 Sum_probs=194.7
Q ss_pred HHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC
Q psy2835 7 LGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84 (305)
Q Consensus 7 ~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~ 84 (305)
..++++|+..++.+ +++.+||+||.++ ++++|+.|.++|+++||+|+++++|+++++++++||+++|++++|+++.+
T Consensus 5 ~~a~~~p~~~a~~~~~~~~~lTy~el~~~-~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~ 83 (501)
T PRK13390 5 THAQIAPDRPAVIVAETGEQVSYRQLDDD-SAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83 (501)
T ss_pred hhhhhCCCCcEEEecCCCeEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence 45677888777654 3678999999995 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCC
Q psy2835 85 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164 (305)
Q Consensus 85 ~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 164 (305)
+.+++.+++++.+++++++++.. .....+.... ....+.+.... .....+++...... +. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~--~~--------~~~~ 147 (501)
T PRK13390 84 TAPEADYIVGDSGARVLVASAAL-DGLAAKVGAD---LPLRLSFGGEI--DGFGSFEAALAGAG--PR--------LTEQ 147 (501)
T ss_pred CHHHHHHHHHhcCCcEEEEcchh-hhHHHHhhhc---cceEEEecCcc--cccccHHHHhcccC--CC--------CCCC
Confidence 99999999999999999998652 1222222111 11122222110 12223333322110 00 1122
Q ss_pred CceeEEEeccCCCCCCcceEe--chhHHHHHHH----HHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 165 NECCTLVYTSGTEGASKPVML--SHDNITFNAA----CIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~--s~~~l~~~~~----~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
+++++|+|||||||.||+|.+ +|.++..... .....+.+ ..+|+++...|++|..++.+ ....+..|+++++
T Consensus 148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~~~~~-~~~~~~~g~~~~~ 225 (501)
T PRK13390 148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDI-SESDIYYSSAPIYHAAPLRW-CSMVHALGGTVVL 225 (501)
T ss_pred cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCC-CCCCeEEecccchhhhHHHH-HHHHHhcCceEEE
Confidence 357999999999999999996 4555544221 12234567 88999999999999988765 3456678999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
.+... +..+++.++++++|++.++|+++..+++.... ...+++++|.++.+
T Consensus 226 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~ 278 (501)
T PRK13390 226 AKRFD-AQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHA 278 (501)
T ss_pred cCCcC-HHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEc
Confidence 87665 79999999999999999999999998864322 23456788876554
No 111
>PRK08308 acyl-CoA synthetase; Validated
Probab=100.00 E-value=2.8e-31 Score=236.00 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=183.4
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCC
Q psy2835 18 IGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 18 ~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 97 (305)
+.++++++||+||.++ ++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..++++++
T Consensus 2 ~~~~~~~~ty~el~~~-~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~ 79 (414)
T PRK08308 2 LIVNDEEYSKSDFDLR-LQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAG 79 (414)
T ss_pred eEecCceecHHHHHHH-HHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCC
Confidence 4567889999999996 999999885 68999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCC
Q psy2835 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 177 (305)
Q Consensus 98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtT 177 (305)
++.+++++... .. .. . ....++++++++||||||
T Consensus 80 ~~~~i~~~~~~----------------~~--~~-------------------~---------~~~~~~~~~~i~~TSGtT 113 (414)
T PRK08308 80 CHGLLYGESDF----------------TK--LE-------------------A---------VNYLAEEPSLLQYSSGTT 113 (414)
T ss_pred CCEEEecCccc----------------cc--cc-------------------C---------CCCCCCCceEEEECCCCC
Confidence 99999976310 00 00 0 012468899999999999
Q ss_pred CCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCC
Q psy2835 178 GASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRP 257 (305)
Q Consensus 178 G~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~v 257 (305)
|.||+|.+||+++..++......+++ ..+|+.+..+|++|.+|+...++.++..|+++++.+..+ +..+++.++++++
T Consensus 114 G~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~-~~~~~~~l~~~~~ 191 (414)
T PRK08308 114 GEPKLIRRSWTEIDREIEAYNEALNC-EQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKN-PKFALNILRNTPQ 191 (414)
T ss_pred CCCcEEEEehHhHHHHHHHHHHhhCC-CcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCC-HHHHHHHHHHhCC
Confidence 99999999999999988888888888 889999999999999999888999999999999998766 7899999999999
Q ss_pred cEEEechHHHHHHHHHH
Q psy2835 258 HVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 258 t~~~~~P~~~~~l~~~~ 274 (305)
|++.++|.++..+.+..
T Consensus 192 t~~~~~P~~~~~l~~~~ 208 (414)
T PRK08308 192 HILYAVPLMLHILGRLL 208 (414)
T ss_pred eEEEcCHHHHHHHHhcC
Confidence 99999999999998753
No 112
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=100.00 E-value=2.6e-31 Score=244.32 Aligned_cols=262 Identities=13% Similarity=0.087 Sum_probs=201.4
Q ss_pred hHHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+.+...+...|+..++.. .++.+||.||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~-v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l 84 (545)
T PRK07768 6 EKMYANARTSPRGMVTGEPDAPVRHTWGEVHER-ARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTML 84 (545)
T ss_pred HHHHHHhhCCCcceEEecCCCceEecHHHHHHH-HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccccc
Confidence 456677778887655533 4468999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHH-------HHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCc
Q psy2835 81 YTTNSPEAC-------LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDE 153 (305)
Q Consensus 81 ~~~~~~~~~-------~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 153 (305)
++..+.+++ .++++.++++.+++++... .....+... . ....+++++...... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~-------------~~~~~~~~l~~~~~~---~ 145 (545)
T PRK07768 85 HQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFL-AAAPVLEEK--G-------------IRVLTVADLLAADPI---D 145 (545)
T ss_pred CCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhh-hhhhhhccc--C-------------CceeehhhhcccCCC---C
Confidence 988776544 5567888999999987631 222111100 0 112334454432111 0
Q ss_pred hhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCC-ceEEEeCchhHHHHHHHHHHHHHHh
Q psy2835 154 SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA-LSVISFLPLSHIAAQTVDIYSVMTV 232 (305)
Q Consensus 154 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~l~~~pl~~~~g~~~~~~~~l~~ 232 (305)
.....++++++|+|||||||.||+|++||+++..+.......+++ ..+ |++++.+|++|..|+...++.++..
T Consensus 146 -----~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 219 (545)
T PRK07768 146 -----PVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEF-DVETDVMVSWLPLFHDMGMVGFLTVPMYF 219 (545)
T ss_pred -----cCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCC-CCCCceeEEeCCCccchHHHHHHHHHHHC
Confidence 013457999999999999999999999999999988877777787 665 8999999999999988777889999
Q ss_pred CcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHHHHH----hhcccChHHHHHHH
Q psy2835 233 AATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA----VGKQTTGVKRWIAN 290 (305)
Q Consensus 233 G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----~~~~~~sl~~~~~~ 290 (305)
|+++++.+... .|..+.+.++++++|++..+|..+..+.+.... ...+++++|.++++
T Consensus 220 g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~ 284 (545)
T PRK07768 220 GAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNG 284 (545)
T ss_pred CceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEec
Confidence 99999886532 367889999999999998888888777654322 13567788766554
No 113
>PRK05691 peptide synthase; Validated
Probab=100.00 E-value=1.3e-31 Score=288.79 Aligned_cols=264 Identities=17% Similarity=0.169 Sum_probs=211.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++++||+||.++ ++++|++|.+.|+++|++|+++++|+.+++++++|++++|++++|++|
T Consensus 2192 ~~~~~~a~~~p~~~Av~~~~~~lTY~eL~~~-~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG~~~vpld~ 2270 (4334)
T PRK05691 2192 GLFAAQAARTPQAPALTFAGQTLSYAELDAR-ANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDP 2270 (4334)
T ss_pred HHHHHHHHHCCCCeEEEeCCeEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCcEeecCCC
Confidence 5788899999999898899999999999995 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++... .+.+.+.. .....+. .... ...+ ......... ...
T Consensus 2271 ~~p~~rl~~il~~~~~~~~l~~~~~-~~~~~~~~---~~~~~~~-~~~~--------~~~~-~~~~~~~~~------~~~ 2330 (4334)
T PRK05691 2271 EYPLERLHYMIEDSGIGLLLSDRAL-FEALGELP---AGVARWC-LEDD--------AAAL-AAYSDAPLP------FLS 2330 (4334)
T ss_pred CChHHHHHHHHHhcCCCEEEeChhh-hhhhcccc---ccceeEE-eccc--------hhhh-hcCCCCCCC------CCC
Confidence 9999999999999999999998763 23222211 1111111 1110 0000 000000000 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+.+......+++ +++|++++..|++|..+. ..++.++..|+++++.+..
T Consensus 2331 ~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~fd~~~-~~i~~~L~~G~~lvl~~~~ 2408 (4334)
T PRK05691 2331 LPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGM-RADDCELHFYSINFDAAS-ERLLVPLLCGARVVLRAQG 2408 (4334)
T ss_pred CCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCC-CcccEEEEecCccHHHHH-HHHHHHHhCCCEEEECCcc
Confidence 56899999999999999999999999999999888888999 999999999999997665 6699999999999997642
Q ss_pred -cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 243 -ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 243 -~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
..+..+.+.++++++|++.++|++++.|.+..... ....++|.++++
T Consensus 2409 ~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~~-~~~~~lr~i~~g 2456 (4334)
T PRK05691 2409 QWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAGQ-GEQLPVRMCITG 2456 (4334)
T ss_pred cCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhcc-ccCCCceEEEEc
Confidence 23689999999999999999999999998765332 345667766544
No 114
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=99.98 E-value=6.5e-31 Score=239.71 Aligned_cols=257 Identities=17% Similarity=0.193 Sum_probs=194.5
Q ss_pred eeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC
Q psy2835 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS 96 (305)
Q Consensus 17 ~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~ 96 (305)
++..+++.+||+||.++ ++++|.+|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++.+
T Consensus 4 ~~~~~~~~~Ty~el~~~-~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~ 82 (509)
T PRK12406 4 TIISGDRRRSFDELAQR-AARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDS 82 (509)
T ss_pred EEEECCeeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhcc
Confidence 34457889999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC--------------CCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 97 DANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP--------------DKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 97 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
+++.++++... .+.+.+.. +.....+...... .......++++..... .. ...
T Consensus 83 ~~~~i~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~ 149 (509)
T PRK12406 83 GARVLIAHADL-LHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PY------DGP 149 (509)
T ss_pred CCcEEEEccch-hhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC---cc------CCC
Confidence 99999998763 33332221 1111111111100 0012233444432111 00 123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHH---HHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNI---TFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..+++++++|||||||.||+|.++|... ..........+++ .+++++++..|++|..+..+ .+.++..|+++++.
T Consensus 150 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~ 227 (509)
T PRK12406 150 PVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGL-KPGIRALLTGPLYHSAPNAY-GLRAGRLGGVLVLQ 227 (509)
T ss_pred CCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCC-CCCceEEEEeCCcccchHHH-HHHHHhhheEEEEc
Confidence 5689999999999999999999876654 3333344556777 88999999999999888766 45678899999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIAN 290 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~~ 290 (305)
+... +..+++.++++++|++.++|+++..+++.... ...+++++|.++.+
T Consensus 228 ~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~g 279 (509)
T PRK12406 228 PRFD-PEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHA 279 (509)
T ss_pred cCCC-HHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEc
Confidence 7655 79999999999999999999999999875432 34467788776544
No 115
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.97 E-value=4.2e-31 Score=234.36 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=191.2
Q ss_pred chHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 26 FYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 26 Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
||+||.++ ++++++.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++..+.+++.++++..++++++++
T Consensus 1 t~~~l~~~-~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~ 79 (408)
T TIGR01733 1 TYRELDER-ANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTD 79 (408)
T ss_pred CHHHHHHH-HHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 79999995 9999999998 899999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceE
Q psy2835 105 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVM 184 (305)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~ 184 (305)
... ...+.... ...+..... +...... ....... ......+++++++|||||||.||+|.
T Consensus 80 ~~~-~~~~~~~~------~~~~~~~~~--------~~~~~~~---~~~~~~~--~~~~~~~~~~~i~~TSGTtG~pK~v~ 139 (408)
T TIGR01733 80 SAL-ASRLAGLV------LPIILVDPL--------ELAALDD---APAPPPP--DAPSGPDDLAYVIYTSGSTGRPKGVV 139 (408)
T ss_pred Cch-hhhccccC------CceEEechh--------hhhhccc---ccccccc--cCCCCCCCcEEEEEcCCCCCCCCEEE
Confidence 763 22222111 011111100 0000000 0000000 01135789999999999999999999
Q ss_pred echhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc--hhHHHHHhhhcCCcEEEe
Q psy2835 185 LSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL--KGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 185 ~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~--~~~~~~~i~~~~vt~~~~ 262 (305)
+||+++..+.......+.+ .++|++++..|++|.+++. .++.++..|+++++.+.... +..+.+.++++++|.+.+
T Consensus 140 ~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~ 217 (408)
T TIGR01733 140 VTHRSLVNLLAWLARRYGL-DPDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL 217 (408)
T ss_pred eccHHHHHHHHHHHHhcCC-CCCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence 9999999999888888888 8999999999999998864 58999999999999887664 678999999999999999
Q ss_pred chHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 263 VPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 263 ~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+|.+++.+.+... .++++||.++.
T Consensus 218 ~p~~~~~l~~~~~---~~~~~l~~v~~ 241 (408)
T TIGR01733 218 TPSLLALLAAALP---PALASLRLVIL 241 (408)
T ss_pred CHHHHHHHHHhhh---hcccCceEEEE
Confidence 9999999998765 45777776553
No 116
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=99.97 E-value=1e-30 Score=234.35 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=180.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
-+.|+||.++ +.++|+.|.+.|+ .+|++|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++
T Consensus 19 ~~~~~el~~~-~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 19 GYNSQRFYQL-AQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred ecChHHHHHH-HHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 4789999996 9999999999998 5799999999999999999999999999999999999999999999999999999
Q ss_pred EeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcc
Q psy2835 103 VEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 182 (305)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~ 182 (305)
++++.. .. . ... . .... ....++++++++|||||||.||+
T Consensus 98 ~~~~~~-~~-------~--------~~~----~--------------~~~~------~~~~~~~~~~i~~TSGTTG~PKg 137 (452)
T PRK07445 98 GLDQLK-LS-------H--------PPP----L--------------PSQG------ILPNLETGWIMIPTGGSSGQIRF 137 (452)
T ss_pred ecCccc-cc-------c--------CCC----C--------------Cccc------cCCCCCCcEEEEeCCCCCCCCcE
Confidence 876521 00 0 000 0 0000 01246899999999999999999
Q ss_pred eEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEe
Q psy2835 183 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~ 262 (305)
|++||+++..++......+++ .+ ++.++.+|++|.+|+.. ++.++..|+++++.+.... ........++++|++.+
T Consensus 138 V~~t~~~l~~~~~~~~~~~~~-~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t~v~~~~~~~-~~~~~~~~~~~~t~~~~ 213 (452)
T PRK07445 138 AIHTWETLTASVQGFQRYFQL-QQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGKLVILPYKRL-KSGQELPPNPSDFFLSL 213 (452)
T ss_pred EEechHHHHHHHHHHHHHhcC-CC-CceEeccCchhhhhHHH-HHHHHHcCCeEEEcChHhc-cchhhhhhhcCceEEEe
Confidence 999999999888877777766 54 46889999999999854 8899999999999874321 22234445789999999
Q ss_pred chHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 263 VPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 263 ~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
+|++++.+++.. ..++++||.++++ ...+.|+++++.|
T Consensus 214 vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~Y 261 (452)
T PRK07445 214 VPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTY 261 (452)
T ss_pred hHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhcCCeEecCc
Confidence 999999988632 2345666644433 2233456666554
No 117
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=99.97 E-value=4.4e-31 Score=236.31 Aligned_cols=240 Identities=22% Similarity=0.246 Sum_probs=190.8
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 26 FYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 26 Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
||+|+.++ ++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..++++++++.+++++
T Consensus 1 Ty~~l~~~-~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 79 (436)
T TIGR01923 1 TWQDLDCE-AAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS 79 (436)
T ss_pred CHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcC
Confidence 89999996 99999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEe
Q psy2835 106 DKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 185 (305)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~ 185 (305)
... .. . +. ...+.++......... .......+++++++|||||||.||+|++
T Consensus 80 ~~~-~~----------~--~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~TSGtTG~PK~v~~ 131 (436)
T TIGR01923 80 LLE-EK----------D--FQ----------ADSLDRIEAAGRYETS-----LSASFNMDQIATLMFTSGTTGKPKAVPH 131 (436)
T ss_pred ccc-cc----------c--ee----------ecchHhhhhccccccc-----ccccCCcCceEEEEeCCCCCCCCcEEEE
Confidence 621 00 0 00 0011111111110000 0013356889999999999999999999
Q ss_pred chhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 186 SHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 186 s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
+|+++...+......+++ .++|++++..|++|..|+. .++.++..|+++++.+.. ..+++.++++++|++.++|+
T Consensus 132 s~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~~~~P~ 206 (436)
T TIGR01923 132 TFRNHYASAVGSKENLGF-TEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKF---NQLLEMIANERVTHISLVPT 206 (436)
T ss_pred ehHHHHHHHHHHHhhcCC-CCCceEEEccCcHhHHHHH-HHHHHHhcCceEEecchH---HHHHHHHHHhCCeEEEeHHH
Confidence 999999998888888888 9999999999999999875 488999999999998766 38899999999999999999
Q ss_pred HHHHHHHHHHHhhcccChHHHH----------HHHHHHHhhhHHHhhh
Q psy2835 266 VWEKIHEKLMAVGKQTTGVKRW----------IANYAKSTSLQHYMAY 303 (305)
Q Consensus 266 ~~~~l~~~~~~~~~~~~sl~~~----------~~~~a~~~g~~~~~~~ 303 (305)
++..+.+..... +++|.+ +..+..+.|+++++.|
T Consensus 207 ~l~~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~Y 250 (436)
T TIGR01923 207 QLNRLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSY 250 (436)
T ss_pred HHHHHHhCcCCC----CceEEEEECCCCCCHHHHHHHHHhCCceeeEe
Confidence 999998753221 334332 2334444577777655
No 118
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.97 E-value=6.6e-29 Score=201.44 Aligned_cols=212 Identities=14% Similarity=0.042 Sum_probs=160.0
Q ss_pred HHHHHHHhcccceeeec-c-----CCccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 4 FLKLGLERYHSVCIIGF-N-----APEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~-~-----~~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+|...++++|++.++.. + ++++||+|+.++ ++++|+.|++ .|+++||+|+++++|+++++++++|++++|++
T Consensus 1 ~~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~-~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v 79 (227)
T TIGR03089 1 LLSPLLAADPASPRLTFYDDATGERVELSAATLANW-VAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVE 79 (227)
T ss_pred ChhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHH-HHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCE
Confidence 35677888899777743 2 226999999995 9999999998 79999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEc-----cCC---CCCCCcccHHHHHHhcc
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-----EGK---PDKPGVISWDELMELGR 148 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~---~~~~~~~~~~~l~~~~~ 148 (305)
++|++ ++++++++++++. ...+. .. +.++.+ ... ....++.++.+......
T Consensus 80 ~vp~n-------------~s~a~~~v~~~~~-~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (227)
T TIGR03089 80 VVLAG-------------DPDADVVVTGPDR-LAAAA-----GS--GEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHG 138 (227)
T ss_pred EEeCC-------------CCCCCEEEeCcch-hhhcc-----cC--CceEEEeccccccCCCCCCCCcccchhhhhhccC
Confidence 99995 6799999998773 33322 11 222222 110 01123345555444211
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 228 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~ 228 (305)
...... ....++|+++|+||||+ +|.++..+. ...++ +++|+++ .+|++|++|+...++.
T Consensus 139 ~~~~~~-----~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l-~~~D~~l-~~Pl~H~~gl~~~~~~ 198 (227)
T TIGR03089 139 DQFAPY-----EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGL-PPGDRVL-VLAWTDLEDFLATLLA 198 (227)
T ss_pred CCCCCC-----CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCC-CCCCeEE-ecCCCchHHHHHHHHH
Confidence 111100 02356899999999985 666666554 45667 8999999 9999999999888999
Q ss_pred HHHhCcEEEEeCCccchhHHHHHhhhcCCc
Q psy2835 229 VMTVAATLWFADKNALKGSLINTLLEVRPH 258 (305)
Q Consensus 229 ~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt 258 (305)
++..|+++++.++++ +..+++.|++||||
T Consensus 199 ~l~~G~t~v~~~rFd-~~~~l~~i~~~~vT 227 (227)
T TIGR03089 199 PLAAGGSLVLVTHPD-PARLDQIAETERVT 227 (227)
T ss_pred HhccCceEEEecCCC-HHHHHHHHHhhcCC
Confidence 999999999998776 79999999999997
No 119
>PLN03051 acyl-activating enzyme; Provisional
Probab=99.96 E-value=3.1e-29 Score=227.90 Aligned_cols=231 Identities=16% Similarity=0.100 Sum_probs=166.9
Q ss_pred ecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH-----HHHHHHHHhccCCCccEEEEccCC
Q psy2835 57 GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-----QLEKILKVKAQCPKLKAIVQYEGK 131 (305)
Q Consensus 57 ~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~ 131 (305)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++.. ..+.+.++..... ...++.....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998641 1122222222121 2222222111
Q ss_pred CC-----CCCcccHHHHHHhccCCCC-chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCC
Q psy2835 132 PD-----KPGVISWDELMELGRAAPD-ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205 (305)
Q Consensus 132 ~~-----~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~ 205 (305)
.. ..+...++++......... ...........++++++|+|||||||.||||++||+++..+.......+++ +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-~ 158 (499)
T PLN03051 80 EPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDI-Q 158 (499)
T ss_pred cccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCC-C
Confidence 00 0123456666532111000 000000012246899999999999999999999999988776655566777 8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccCh
Q psy2835 206 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTG 283 (305)
Q Consensus 206 ~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~s 283 (305)
++|++++..|++|..|+. .++.++..|+++++.+....+..+++.|+++++|++.++|+++..|+++.. ....++++
T Consensus 159 ~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~ 237 (499)
T PLN03051 159 PGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSK 237 (499)
T ss_pred CCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchh
Confidence 899999999999998874 588999999999998753336899999999999999999999999987543 33456788
Q ss_pred HHHHHHH
Q psy2835 284 VKRWIAN 290 (305)
Q Consensus 284 l~~~~~~ 290 (305)
||.++++
T Consensus 238 Lr~i~~g 244 (499)
T PLN03051 238 LRVFAST 244 (499)
T ss_pred heEEEec
Confidence 8866554
No 120
>KOG1175|consensus
Probab=99.96 E-value=1.3e-27 Score=213.13 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=197.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.+||.|+.++ +.++|..|.+.|+++||+|++.+|+.++++++++||.++|++..++...++++++...++.++++++++
T Consensus 96 ~~t~~el~~~-v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t 174 (626)
T KOG1175|consen 96 VWTYKELLDQ-VVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIIT 174 (626)
T ss_pred EEEHHHHHHH-HHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEE
Confidence 4899999996 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eChH--------HHHHHHHHhccCCCc----cEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccCCCceeEEE
Q psy2835 104 EDDK--------QLEKILKVKAQCPKL----KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLV 171 (305)
Q Consensus 104 ~~~~--------~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 171 (305)
.+.. ....+.+........ ...+.+... .....|+........... ..+...+||-+|+
T Consensus 175 ~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~a~~~~~------~~~~~~edpl~Il 245 (626)
T KOG1175|consen 175 QDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR---NRDLFWSLELKKASPEHP------CVPVKAEDPLFIL 245 (626)
T ss_pred EeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc---cccccHHHHhhhcCCCCC------ceecCccCceEEE
Confidence 7531 112222222222211 111111111 223445555444432222 1356789999999
Q ss_pred eccCCCCCCcceEechhHHHH-HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc-chhHHH
Q psy2835 172 YTSGTEGASKPVMLSHDNITF-NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA-LKGSLI 249 (305)
Q Consensus 172 ~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~-~~~~~~ 249 (305)
|||||||.||++.+++....- .+......+++ .++|+.++...+.|+.|..+.++.+|++|+++++.+... ++..++
T Consensus 246 fTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~-q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~ 324 (626)
T KOG1175|consen 246 FTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDL-QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIW 324 (626)
T ss_pred ecCCCCCCCCceeeccCcchHHHhhhcceeccC-CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhh
Confidence 999999999999999886555 44455556777 999999999999999999988888999999999987443 689999
Q ss_pred HHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 250 NTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 250 ~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
+.+.+|++|+++..|+.++.|.+.... ..++.++||.+..
T Consensus 325 ~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S 366 (626)
T KOG1175|consen 325 KILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGS 366 (626)
T ss_pred hhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEee
Confidence 999999999999999999988765433 3444455665443
No 121
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=6.7e-23 Score=192.13 Aligned_cols=242 Identities=18% Similarity=0.184 Sum_probs=196.3
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+.+...+.+.|+..++...+..+||+++..+ ++++|..|.+.|+.+++.|+++.+.+.++++.++|++++|..++|+++
T Consensus 231 ~~f~~~a~~~p~~~a~~~~~~~lty~el~~~-a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~yvP~d~ 309 (642)
T COG1020 231 LLFEEQAATTPDAVALVRGGQQLTYAELDAR-ANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDP 309 (642)
T ss_pred HHHHHHHHhCCCceeEecCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeEecCCC
Confidence 3678889999999888788899999999996 999999999999999999999998899999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
..+.+.+.+++++.+++.+++..... ... ...+. +..+... +. .....+. ....
T Consensus 310 ~~P~~r~~~~l~~~~~~~~~~~~~~~--~~~---~~~~~----~~~~~~~-------~~----~~~~~~~------~~~~ 363 (642)
T COG1020 310 LYPAERLAYILEDSRPTLLLTQAHLR--VDD---VGLPG----LALDDAL-------SE----IPDTDPI------PQAL 363 (642)
T ss_pred CChHHHHHHHHhhcCccEEEeccccc--ccc---ccCCc----ccccccc-------cc----CCccCcc------cccC
Confidence 99999999999999999999983310 000 00110 1111100 00 0000000 0123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.+++.++++|||||||+||||..+|+++.+........+.+ +..|+++...++.+ +..++.++.++..|+++++.+..
T Consensus 364 ~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~-~~~d~~l~~~s~~f-D~~~~~~f~~l~~G~~l~~~~~~ 441 (642)
T COG1020 364 LGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGL-DADDRVLALASLSF-DASVFEIFGALLEGARLVLAPAL 441 (642)
T ss_pred CCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCC-CcccEEeecCCccc-chhHHHHHHHHhCCCEEEecCcc
Confidence 55899999999999999999999999999977777777888 88999999999966 55567899999999999999854
Q ss_pred c--chhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 243 A--LKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 243 ~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
. ++..+.+.+.++++|++..+|.++..++..
T Consensus 442 ~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~ 474 (642)
T COG1020 442 LQVDPAALLELLEAQGITVLLLVPLLLRLLLLA 474 (642)
T ss_pred ccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhc
Confidence 3 268889999999999999999999999876
No 122
>KOG3628|consensus
Probab=99.82 E-value=1.5e-18 Score=159.29 Aligned_cols=264 Identities=9% Similarity=0.018 Sum_probs=198.7
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
++|++.++++|+..++.. ...++||.+|..| +.+++.+|...+ +++||+|+++.+++.|++++++||+.+|.
T Consensus 774 e~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~kr-va~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~Gl 852 (1363)
T KOG3628|consen 774 EILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKR-VARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGL 852 (1363)
T ss_pred HHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHH-HHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCe
Confidence 689999999999555543 2358999999997 999999999774 79999999999999999999999999999
Q ss_pred eEEecCCCC------CHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC-----CccEEEEccCCCCCCCcccHHHHH
Q psy2835 76 FAAGMYTTN------SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP-----KLKAIVQYEGKPDKPGVISWDELM 144 (305)
Q Consensus 76 ~~v~i~~~~------~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~l~ 144 (305)
+++|++|.- ..+.+..+++.+++..|+++.. ...++...+... ....++..++.+ .+|..-.
T Consensus 853 iPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~--v~~lLrsr~~s~~~~~s~~p~i~~~~~~~-----~t~~k~~ 925 (1363)
T KOG3628|consen 853 IPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQK--VLKLLRSREASAHVDQSAIPLILVLPKLP-----ETIRKRK 925 (1363)
T ss_pred eeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHH--HHHHHhhhhHHHHhhhhcchhhhcccccc-----hhhhhhh
Confidence 999998853 4567889999999999999976 233322211111 111111111110 0011111
Q ss_pred HhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH
Q psy2835 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
.. .............+.+.+|++-+.--++|.--++.+||+++++......+...+ ..+.-++.+.+++.+.|+..
T Consensus 926 ~~---~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l-~~~rpl~~~~~~~sGlgf~~ 1001 (1363)
T KOG3628|consen 926 KN---IKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQL-YKSRPLLGCSSPYSGLGFNH 1001 (1363)
T ss_pred hh---hhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHcc-ccCCceEEEecCccchhHHH
Confidence 11 011111111112456899999999999999999999999999999999888888 88888888888888899999
Q ss_pred HHHHHHHhCcEEEEeCCccc---hhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh
Q psy2835 225 DIYSVMTVAATLWFADKNAL---KGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG 278 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~---~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~ 278 (305)
.++...+.|.+.++.++.+. |..+++.|++|+|.-++.+=..++.+.+......
T Consensus 1002 wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~ 1058 (1363)
T KOG3628|consen 1002 WCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSV 1058 (1363)
T ss_pred HHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccccc
Confidence 99999999999877765432 7899999999999999999998988887554433
No 123
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=99.72 E-value=7.8e-17 Score=140.98 Aligned_cols=115 Identities=18% Similarity=0.194 Sum_probs=95.2
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCC--CceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA--ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
.+..++++|||||||.||+|++||+++...+......+++ .. .|++++.+|++|++|+.+.++.++..|+++++.+.
T Consensus 94 ~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~ 172 (386)
T TIGR02372 94 TPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGE-RPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA 172 (386)
T ss_pred CCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCc-CCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence 3557899999999999999999999999988877777766 43 46899999999999988888999999999999887
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR 286 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~ 286 (305)
+. +..+++.++.+ |++.++|++++.+.+.. .++++++.
T Consensus 173 ~~-~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~ 210 (386)
T TIGR02372 173 AP-ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG 210 (386)
T ss_pred CC-hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee
Confidence 65 57777777643 89999999999997642 34566664
No 124
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=99.64 E-value=7.2e-16 Score=134.59 Aligned_cols=137 Identities=19% Similarity=0.164 Sum_probs=102.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE--e
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF--A 239 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~--~ 239 (305)
..++++++++|||||||.||+|++||+++.......... + ...++++..+|++|..|+.. ++.++..|+++++ .
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~-~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--L-GGPGQWLLALPAHHIAGLQV-LVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--c-CCCCeEEEECChHHHHHHHH-HHHHHHcCCeEEecCc
Confidence 356899999999999999999999999999887765443 3 45678999999999999865 7888999999887 3
Q ss_pred CCccchhHHHHHhhhcC--CcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVR--PHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~--vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
.....+..+++.+++++ .++...+|..+..++.+... ..+++++|.++++ +..+.|+++++.|
T Consensus 108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~Y 182 (358)
T PRK07824 108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTY 182 (358)
T ss_pred CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecc
Confidence 33334789999999998 56667789888877664332 2346666644333 3344566666655
No 125
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.50 E-value=5e-14 Score=125.65 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHH---HHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI---IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..++++.+++||||||.||++.+||.++....... ...+++ .++|++++..+..+..+.....+..+..|++++..
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGG-RPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCC-CCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 34678889999999999999999999987654332 234577 88999988776554333333356677889999877
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+... ++.+++.|++++||++.++|+++..|.+.......+ ..++|.++++ +.+.+|+++++.|
T Consensus 152 ~~~~-~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~Y 227 (422)
T TIGR02155 152 SGGQ-TEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIY 227 (422)
T ss_pred CCCC-HHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecc
Confidence 7655 589999999999999999999999998866544322 2355544332 2334666666655
No 126
>KOG1178|consensus
Probab=99.48 E-value=3.2e-13 Score=127.51 Aligned_cols=248 Identities=15% Similarity=0.091 Sum_probs=159.7
Q ss_pred HHHHHHHhcccceeeec------c--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 4 FLKLGLERYHSVCIIGF------N--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~------~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
.+.+.+..+|......+ . -..+||++... .++.+++.+...|...|+.|++.+..+.++++..++.++.|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~-~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~ 119 (1032)
T KOG1178|consen 41 SFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRL-LSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGL 119 (1032)
T ss_pred HHHHHHhhcccCCCceEeecccccccccchhhhhhhc-ccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcce
Confidence 44555555665333222 1 24799999999 599999999999999999999999999999999999999999
Q ss_pred eEEecCCCCC----HHHHHH---HHhhCCceEEEEeChHHHHHHHHHhccC-CCccEEEEccCCCCCCCcccHHHHHHhc
Q psy2835 76 FAAGMYTTNS----PEACLH---CLVTSDANICVVEDDKQLEKILKVKAQC-PKLKAIVQYEGKPDKPGVISWDELMELG 147 (305)
Q Consensus 76 ~~v~i~~~~~----~~~~~~---~l~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~ 147 (305)
.+++++|+++ .+++.. .+......+ .... +-......+. +... +. .....+..+....
T Consensus 120 ~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i--~~~l---~i~~~~~~~~~~~~s----v~-----~~~~~f~~~~~~~ 185 (1032)
T KOG1178|consen 120 TFLPIDPSWPNSELAGYLMRIAHFLTSVELEI--VRRL---NIIDILLNSLFPKLS----VE-----TIADSFQMVLHNE 185 (1032)
T ss_pred EEEEecCCCcccccchHHHhhhhhheecccee--hhhh---hhHHHHhhccccccc----hh-----hccchhhhhhccC
Confidence 9999999999 232111 111111111 1110 0011011111 0000 00 0011122221111
Q ss_pred cCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHH
Q psy2835 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227 (305)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~ 227 (305)
.. .. ......+..+++.||||+||.||+|.-+|..+.....+....++. +.+++.-.....+........+.
T Consensus 186 ~~-r~------~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~-t~s~~~~~~~~~~~~d~i~~~~~ 257 (1032)
T KOG1178|consen 186 DT-RE------IRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPP-TGSDRFTFKTSVYFDDTIQKFIG 257 (1032)
T ss_pred CC-cc------eeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCc-CccchhhhhheeecccchHHHHh
Confidence 11 00 012355778999999999999999999999999999988888777 77776533333333333333355
Q ss_pred HHHHhCcEEEEeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHH
Q psy2835 228 SVMTVAATLWFADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 228 ~~l~~G~~~v~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 274 (305)
+.+.+|..+..+..... |..+.+.+++|+++..+.+|++.+.++...
T Consensus 258 ~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~ 306 (1032)
T KOG1178|consen 258 ALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAIL 306 (1032)
T ss_pred hHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhc
Confidence 66666665655544332 689999999999999999999988887643
No 127
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.39 E-value=1.2e-12 Score=117.37 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=99.3
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..++++.+.+||||||.||+|.+||.++.......... .++ +++|+++...|..+..|.....+.++..|++++..
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~-~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGF-TAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 45688899999999999999999999988766544433 477 88999999999887666544345667788887644
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhc--ccChHHHHHHH----------H-HHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGK--QTTGVKRWIAN----------Y-AKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~sl~~~~~~----------~-a~~~g~~~~~~~ 303 (305)
... ...++.|+++++|.+.++|+.+..|.+....... +..++|.++++ + ...+|+++++.|
T Consensus 163 ~~~---~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~Y 236 (445)
T TIGR03335 163 GKC---TFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTY 236 (445)
T ss_pred Cch---hHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecC
Confidence 432 4568999999999999999998888776554432 23566654443 2 223577777665
No 128
>KOG3628|consensus
Probab=98.85 E-value=8.2e-09 Score=96.50 Aligned_cols=243 Identities=13% Similarity=0.087 Sum_probs=170.7
Q ss_pred CccchHHHHHHHHHHHHH-HHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 23 PEWFYSDLGAIYAGGLAK-AFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~-~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
..+||..+..| +++.|+ .|-+.|..++|+|.++...+ .++++..++|+..|++++|+.+..+.+++..+++..+.+
T Consensus 123 ~~~twdkl~~r-A~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~ 201 (1363)
T KOG3628|consen 123 TSITWDKLLNR-AEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPER 201 (1363)
T ss_pred eeeeHHHHHHH-HHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccc
Confidence 36999999997 999999 77788999999999987665 699999999999999999999999999999999999999
Q ss_pred EEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCC-CC--chhHHh-hhccCCCceeEEEeccC
Q psy2835 100 ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA-PD--ESLDRV-LETIATNECCTLVYTSG 175 (305)
Q Consensus 100 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~~-~~~~~~~~~~~i~~TSG 175 (305)
+++..... +++..-.. . -.+++..+...... .. ...+.. .+..... ..+|-||++
T Consensus 202 ~~l~t~a~--~r~~~~~~-~-----------------~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s 260 (1363)
T KOG3628|consen 202 VALTTEAG--ERAFINDN-S-----------------PVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRS 260 (1363)
T ss_pred eEeehhhh--HHHhhhcc-C-----------------cccHHHHHHhhhcccccceeehhhccCCceeee-eEEEEEecc
Confidence 99987652 22211100 0 01122222111000 00 000000 0011223 789999999
Q ss_pred CCCCCcceEechhHHHHHHHHHHHh--------------------hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 176 TEGASKPVMLSHDNITFNAACIIQY--------------------FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 176 tTG~pK~v~~s~~~l~~~~~~~~~~--------------------~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
++|.--|++.+|. +..+.+.+... ++. ...+..+.....+...|++.+++.++..|.|
T Consensus 261 ~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~s~~lGlilGV~~alfsg~c 338 (1363)
T KOG3628|consen 261 PLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPV-PSEDVLLTNLDPSQQLGLILGVLVALFSGYC 338 (1363)
T ss_pred chhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcccc-CcccceeeccCcccccchhhhhhhhhhcCce
Confidence 9999999999998 55544433221 122 5567888888888889999999999999999
Q ss_pred EEEeCCccc--hhHHHHHhhhcCCcEEEechHHHHHHHHHH-----------HHhhcccChHHHHHH
Q psy2835 236 LWFADKNAL--KGSLINTLLEVRPHVFLAVPRVWEKIHEKL-----------MAVGKQTTGVKRWIA 289 (305)
Q Consensus 236 ~v~~~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----------~~~~~~~~sl~~~~~ 289 (305)
.+..++... |..+.+.+.+||.+++..--..++.....+ +....+++++|.++.
T Consensus 339 ~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~V 405 (1363)
T KOG3628|consen 339 TIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMV 405 (1363)
T ss_pred eecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEE
Confidence 999987322 689999999999999877655554443221 223356777775544
No 129
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=98.63 E-value=1.3e-07 Score=82.12 Aligned_cols=125 Identities=15% Similarity=0.150 Sum_probs=90.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHH-HHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHI-AAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~-~g~~~~~~~~l~~G~~~v~ 238 (305)
..++...|--||||||+|+.+.++...+...+..+...+ +. ..+|++....-..-. .|+.. -..+--.|++++-
T Consensus 88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~-~~gd~v~~~~~yGl~tgg~~~-~~ga~rig~~vip 165 (438)
T COG1541 88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGV-RKGDKVQNAYGYGLFTGGLGL-HYGAERIGATVIP 165 (438)
T ss_pred cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeeeccccCCchh-HHHHHhhCEEEEc
Confidence 446677799999999999999999998888666655544 44 677776665542111 22111 2333346777776
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh--cccChHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG--KQTTGVKRWIAN 290 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~sl~~~~~~ 290 (305)
..+... +.-++.++.+++|++.++|+.+..|.+..+... .+-.+||.++++
T Consensus 166 ~~~g~~-~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~g 218 (438)
T COG1541 166 ISGGNT-ERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFG 218 (438)
T ss_pred cCCccH-HHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEe
Confidence 655443 788999999999999999999999999888873 566778877776
No 130
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=97.54 E-value=0.00045 Score=61.48 Aligned_cols=126 Identities=20% Similarity=0.171 Sum_probs=74.2
Q ss_pred eEEEeccCCCCCCcceEechhHHHHHHHHH-HHhh--ccCCCCceEEEe--CchhHHHHHHHHHHHHHHhCc-EEEEeCC
Q psy2835 168 CTLVYTSGTEGASKPVMLSHDNITFNAACI-IQYF--KLESAALSVISF--LPLSHIAAQTVDIYSVMTVAA-TLWFADK 241 (305)
Q Consensus 168 ~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~-~~~~--~~~~~~~~~l~~--~pl~~~~g~~~~~~~~l~~G~-~~v~~~~ 241 (305)
..+..||||||.|=.+..+........... .... ++ ..++++... .+. + +...+.+.. .+-+.+-
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~-~~g~r~a~~~~~~~-~-------ly~~~~~~~~~~~~~~l 172 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGL-FAKHRIAFFLRADN-N-------LYQSVNNRWISLDFFDL 172 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcccc-ccCCcEEEEEccCh-h-------HHHHHHhccceeeecCC
Confidence 456789999999999999988665433222 2222 33 444554444 222 2 122222221 1222322
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------H-HHHhhhHHHhhh
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------Y-AKSTSLQHYMAY 303 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~-a~~~g~~~~~~~ 303 (305)
....+..++.|++++|+++.+.|+.+..|.+.......+ .+++.+++. . .+.+|+++++.|
T Consensus 173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~Y 244 (430)
T TIGR02304 173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIY 244 (430)
T ss_pred CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEcc
Confidence 232488999999999999999999999999876554322 234432222 1 223577777665
No 131
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=96.90 E-value=0.013 Score=51.69 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=73.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
-+|+.|+.. ++..+|..|...|..+||+|.....-+ ..-.-..+|+.++|+.++|+.+. ..+....++++.++.+|
T Consensus 109 ~~t~~D~~~-wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 109 GYTAKDIER-WAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred ecCHHHHHH-HHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 399999999 699999999999999999988765511 11167889999999999999983 44566788999999999
Q ss_pred EEeChHHHHHHHHHhc
Q psy2835 102 VVEDDKQLEKILKVKA 117 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~ 117 (305)
.+.....+..++.+.+
T Consensus 187 ~~tps~~l~lae~~~~ 202 (438)
T COG1541 187 AATPSYLLYLAEEAEE 202 (438)
T ss_pred EEChHHHHHHHHHHHH
Confidence 9998865444444433
No 132
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=95.04 E-value=0.61 Score=40.82 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=61.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc---cCC-CCceEEEeCchhHH---HHH-HHHHHHHHHhCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK---LES-AALSVISFLPLSHI---AAQ-TVDIYSVMTVAA 234 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~---~~~-~~~~~l~~~pl~~~---~g~-~~~~~~~l~~G~ 234 (305)
.++++..++-||||||.|.-+.+.+..+..+.......+. ... ....++...|-... .+. .......+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 3467788999999999986666666666665544443332 101 12233333333211 111 111222333445
Q ss_pred EEEEeCCc-cchhHHHHHh----hhcCCcEEEechHHHHHHHHHHHHh
Q psy2835 235 TLWFADKN-ALKGSLINTL----LEVRPHVFLAVPRVWEKIHEKLMAV 277 (305)
Q Consensus 235 ~~v~~~~~-~~~~~~~~~i----~~~~vt~~~~~P~~~~~l~~~~~~~ 277 (305)
. .+..+. .+.+.+.+.+ .+.++..+++.|.++..++...+..
T Consensus 167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~ 213 (365)
T PF04443_consen 167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEER 213 (365)
T ss_pred e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhc
Confidence 5 444332 2234444444 3556888999999888777665544
No 133
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=93.53 E-value=1.9 Score=39.00 Aligned_cols=80 Identities=15% Similarity=-0.008 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh--HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE--WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~--~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
-+|.+++.. .+...+..+...|+.+||++.+..+-+.. .....+++...|+.+++... .+....++++.++.++
T Consensus 105 ~~T~~dl~~-~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 105 FLTWDDWKR-YAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eecHHHHHH-HHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 378999988 58888888888899999999888765542 23456788899998876653 2345678899999998
Q ss_pred EEeChH
Q psy2835 102 VVEDDK 107 (305)
Q Consensus 102 ~~~~~~ 107 (305)
++....
T Consensus 181 ~~~ps~ 186 (445)
T TIGR03335 181 VASVFK 186 (445)
T ss_pred EECHHH
Confidence 876653
No 134
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=92.58 E-value=2.6 Score=37.70 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCh--hHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+|..++.. ....++..+...|+.+||++........ ......++....|+.++++++.. .+.+...+++.++++++
T Consensus 95 ~t~~~~~~-~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~ 172 (422)
T TIGR02155 95 YTQNDIDT-WSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM 172 (422)
T ss_pred cCHHHHHH-HHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence 77888877 4666777778889999999877654432 22334677889999999988764 57788999999999999
Q ss_pred EeChH
Q psy2835 103 VEDDK 107 (305)
Q Consensus 103 ~~~~~ 107 (305)
+....
T Consensus 173 ~~Ps~ 177 (422)
T TIGR02155 173 VTPSY 177 (422)
T ss_pred EcHHH
Confidence 98774
No 135
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=89.94 E-value=4.3 Score=35.98 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=69.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++. -....+|++.+...+..+... .++ +.++++....|-+. .++..+++++..|+..+
T Consensus 6 ~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~-~~~~~V~i~~~n~~--~~~~~~~A~~~~G~~~v 74 (417)
T PF00501_consen 6 QRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGV-KKGDRVAILLPNSI--EFVVAFLACLRAGAIPV 74 (417)
T ss_dssp HHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTS-STTSEEEEEESSSH--HHHHHHHHHHHTT-EEE
T ss_pred hhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCC-CccccccccCCccc--eeeeeeccccccccccc
Confidence 44788888876 245688999999877766554 466 78888888777754 23444889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEe
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~ 262 (305)
..+.....+.+...+++.++.+++.
T Consensus 75 ~l~~~~~~~~~~~~l~~~~~~~ii~ 99 (417)
T PF00501_consen 75 PLDPSLSEDELRHILRQSGPKVIIT 99 (417)
T ss_dssp EEETTSSHHHHHHHHHHHTESEEEE
T ss_pred ccccccccccccccccccceeEEEE
Confidence 9977665788999999999999996
No 136
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=89.36 E-value=7.1 Score=33.04 Aligned_cols=91 Identities=12% Similarity=-0.002 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh-H
Q psy2835 30 LGAIYAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD-K 107 (305)
Q Consensus 30 l~~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~-~ 107 (305)
+.+|.+..+.....+.| +++|+ ..|=...+.--+...+.|...|..++..=|..-..+...+|+..++.+++++.. .
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g 119 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCC
Confidence 33444444444555666 78888 555556666667777777788888777777666678889999999999999872 1
Q ss_pred ----HHHHHHHHhccCCC
Q psy2835 108 ----QLEKILKVKAQCPK 121 (305)
Q Consensus 108 ----~~~~~~~~~~~~~~ 121 (305)
..+++.++..+.++
T Consensus 120 ~~~~a~~~a~el~~~~p~ 137 (300)
T COG0031 120 NMKGAIERAKELAAEIPG 137 (300)
T ss_pred chHHHHHHHHHHHHhCCC
Confidence 23444445555544
No 137
>PRK09274 peptide synthase; Provisional
Probab=86.86 E-value=13 Score=34.55 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=71.5
Q ss_pred CCCceeEEEeccCCC-CCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTE-GASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++....++. +..+...+|++.+...+..+...+ ++ .++|++...++-+.- .+..+++++..|+..+.
T Consensus 19 ~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~-~~gd~V~~~~~n~~~--~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 19 RPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGI-GRGMRAVLMVTPSLE--FFALTFALFKAGAVPVL 95 (552)
T ss_pred CCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCcHH--HHHHHHHHHHcCeEEEE
Confidence 556777654332221 223344789999988777666554 67 889999998886653 34447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEech
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.+....++.+...+++.++..+...+
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~ 121 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIP 121 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEecc
Confidence 87766568888899999999988755
No 138
>PLN02736 long-chain acyl-CoA synthetase
Probab=86.15 E-value=21 Score=34.00 Aligned_cols=106 Identities=7% Similarity=-0.107 Sum_probs=76.5
Q ss_pred cCCCceeEEEec--cCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 162 IATNECCTLVYT--SGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 162 ~~~~~~~~i~~T--SGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
..++.+++.... .|.+|. -..+|++.+...+..+... .++ .++|++...+|-.--+ +...++++..|+.+
T Consensus 56 ~~p~~~al~~~~~~~~~~~~--~~~lTy~el~~~v~~lA~~L~~~Gv-~~gd~Vai~~~n~~e~--~~~~lA~~~~G~v~ 130 (651)
T PLN02736 56 TFRDYKYLGTRIRVDGTVGE--YKWMTYGEAGTARTAIGSGLVQHGI-PKGACVGLYFINRPEW--LIVDHACSAYSYVS 130 (651)
T ss_pred hCCCCCeEEEEecCCCCCCC--cEEEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCCeE
Confidence 356777764321 232221 2458999998887776554 467 8899998888766533 34478999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+.......++.+...++..++.+++..+..+..+..
T Consensus 131 vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~ 166 (651)
T PLN02736 131 VPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLS 166 (651)
T ss_pred EEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHH
Confidence 987766667899999999999999999887766544
No 139
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=86.09 E-value=13 Score=33.99 Aligned_cols=85 Identities=12% Similarity=0.022 Sum_probs=67.2
Q ss_pred echhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEE
Q psy2835 185 LSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFL 261 (305)
Q Consensus 185 ~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~ 261 (305)
+|+..+...+..+... .++ +.++++....|-+.. .+..+++++..|+..+..+....+..+...+++.++..++
T Consensus 32 ~Ty~~l~~~~~~~a~~L~~~g~-~~~~~V~l~~~~~~~--~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~ 108 (521)
T PRK06187 32 TTYAELDERVNRLANALRALGV-KKGDRVAVFDWNSHE--YLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVL 108 (521)
T ss_pred EcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEE
Confidence 9999988876665544 456 789999999888763 3445899999999999888766678899999999999999
Q ss_pred echHHHHHHHH
Q psy2835 262 AVPRVWEKIHE 272 (305)
Q Consensus 262 ~~P~~~~~l~~ 272 (305)
........+.+
T Consensus 109 ~~~~~~~~~~~ 119 (521)
T PRK06187 109 VDSEFVPLLAA 119 (521)
T ss_pred EcchHHHHHHH
Confidence 88877666543
No 140
>PLN03102 acyl-activating enzyme; Provisional
Probab=85.81 E-value=13 Score=34.78 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=74.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. .| -.+|++.+...+..+...+ ++ ..+|++...+|-.- .+...+++++..|+.++.
T Consensus 26 ~~p~~~Al~~--~~-------~~~Ty~eL~~~~~~~a~~L~~~Gl-~~gd~Vai~~~n~~--e~~~~~la~~~~G~~~vp 93 (579)
T PLN03102 26 CYPNRTSIIY--GK-------TRFTWPQTYDRCCRLAASLISLNI-TKNDVVSVLAPNTP--AMYEMHFAVPMAGAVLNP 93 (579)
T ss_pred hCCCCeEEEE--CC-------cEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcH--HHHHHHHHHHhcCcEEee
Confidence 3567777653 11 2689999998877766654 67 88999998888654 334458899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...+++.+++.+...+.....+
T Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 125 (579)
T PLN03102 94 INTRLDATSIAAILRHAKPKILFVDRSFEPLA 125 (579)
T ss_pred ccccCCHHHHHHHHhccCCeEEEEChhhHHHH
Confidence 88776679999999999999999877665444
No 141
>PLN02565 cysteine synthase
Probab=85.41 E-value=21 Score=30.78 Aligned_cols=72 Identities=13% Similarity=-0.066 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 34 YAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 34 ~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.+..+...+.+.|. .+|....+....+..-....+++...|..+..+-|...+......++..+++++++++
T Consensus 49 ~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~ 121 (322)
T PLN02565 49 IGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDP 121 (322)
T ss_pred HHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Confidence 34445555566664 7786656666777777888888889999988877877888888999999999999985
No 142
>PLN03052 acetate--CoA ligase; Provisional
Probab=84.74 E-value=18 Score=35.11 Aligned_cols=100 Identities=3% Similarity=0.069 Sum_probs=74.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.-..|..|.+ ...+|++.|...+..+... .++ .++|++...+|-+-- .+..+++++..|+..+.+
T Consensus 188 ~pd~~Ai~~~~e~~~~~~-~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GdrVai~~pn~~e--~via~LA~~~~Gav~vpi 263 (728)
T PLN03052 188 TDDSIAIIWRDEGSDDLP-VNRMTLSELRSQVSRVANALDALGF-EKGDAIAIDMPMNVH--AVIIYLAIILAGCVVVSI 263 (728)
T ss_pred CCCCeEEEEECCCCCCCc-eEEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHcCCEEEee
Confidence 457777654333322222 3568999998877766654 467 899999999998653 334488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
.....++.+...++..++.+++.....
T Consensus 264 ~p~~~~~~l~~rl~~~~~k~lit~d~~ 290 (728)
T PLN03052 264 ADSFAPSEIATRLKISKAKAIFTQDVI 290 (728)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcCcc
Confidence 777667999999999999999887643
No 143
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=84.64 E-value=7.1 Score=31.68 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHcCCCCCCeEEEEecCCh--hHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 43 LKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
...|+.++|++. .+|=.. -....+++.+..|+..+.. ++.+++.+...+++.++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV 226 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence 567889999998 877544 3345689999999998887 58999999999888765
No 144
>PRK06839 acyl-CoA synthetase; Validated
Probab=84.27 E-value=23 Score=32.16 Aligned_cols=98 Identities=8% Similarity=0.062 Sum_probs=74.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
.+++.++++. ....+|+..+...+..+...+ ++ .+++++...++-+.- ++..+++++..|+..+
T Consensus 14 ~~p~~~a~~~---------~~~~~ty~~l~~~~~~la~~L~~~~g~-~~~~~V~i~~~~~~~--~~~~~la~~~~G~~~~ 81 (496)
T PRK06839 14 LHPDRIAIIT---------EEEEMTYKQLHEYVSKVAAYLIYELNV-KKGERIAILSQNSLE--YIVLLFAIAKVECIAV 81 (496)
T ss_pred HCCCCeEEEE---------CCceEEHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEE
Confidence 3567777663 145799999998877766554 56 788998888877753 3444889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
..+....+..+...+++.+++.++..+.....+.
T Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 115 (496)
T PRK06839 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMAL 115 (496)
T ss_pred ecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHH
Confidence 8886665788888999999999999887765543
No 145
>KOG1176|consensus
Probab=84.17 E-value=18 Score=33.62 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=75.1
Q ss_pred ceEechhHHHHHHHHHHHhhc-----cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcC
Q psy2835 182 PVMLSHDNITFNAACIIQYFK-----LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVR 256 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~ 256 (305)
+..+|++.+...+..++..+. + +.+|++...+|=+.-+.. ..++++..|+.+.-.....++.++...++..+
T Consensus 43 g~~~T~~e~~~~~~r~A~~L~~~~~~i-~~gDvV~i~~pNs~~~~~--~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~ 119 (537)
T KOG1176|consen 43 GRELTYSELHDRCRRLASALSELGLGI-KKGDVVGILAPNTPEFVE--LALAVPMAGAVLNPLNPRLTASEIAKQLKDSK 119 (537)
T ss_pred CcEEcHHHHHHHHHHHHHHHHhcCCCC-CCCCEEEEEcCCCHHHHH--HHHHHHHcCccccccCcccCHHHHHHHHHhcC
Confidence 789999999998888777653 5 779999999998775443 36888899999988877776789999999999
Q ss_pred CcEEEechHHHHHHHHHH
Q psy2835 257 PHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 257 vt~~~~~P~~~~~l~~~~ 274 (305)
+.+++.....+..+.+..
T Consensus 120 ~kiif~d~~~~~~i~~~~ 137 (537)
T KOG1176|consen 120 PKLIFVDEDFYDKISEAT 137 (537)
T ss_pred CeEEEEcCchHHHHHHHH
Confidence 999999999888886543
No 146
>PRK05857 acyl-CoA synthetase; Validated
Probab=84.02 E-value=13 Score=34.39 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=71.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. .| ...+|+..+...+..+...+ ++ .++|++...++-+.-+ +..+++++..|+..+.
T Consensus 26 ~~p~~~a~~~~-~~------~~~~Ty~el~~~~~~~a~~L~~~g~-~~g~~V~i~~~~~~e~--~~~~lA~~~~G~v~v~ 95 (540)
T PRK05857 26 QQPEAIALRRC-DG------TSALRYRELVAEVGGLAADLRAQSV-SRGSRVLVISDNGPET--YLSVLACAKLGAIAVM 95 (540)
T ss_pred hCCCcEEEeec-CC------CceeeHHHHHHHHHHHHHHHHHhCc-CCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEe
Confidence 35677776532 22 14689999998877766654 56 8899999888776633 3448999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
++....++.+...++..++..++..+..
T Consensus 96 l~~~~~~~~l~~~~~~~~~~~ii~~~~~ 123 (540)
T PRK05857 96 ADGNLPIAAIERFCQITDPAAALVAPGS 123 (540)
T ss_pred cCccCCHHHHHHHHHhcCCceEEEeccc
Confidence 8876667888889999999988877653
No 147
>PRK08316 acyl-CoA synthetase; Validated
Probab=84.00 E-value=20 Score=32.77 Aligned_cols=98 Identities=9% Similarity=-0.044 Sum_probs=73.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. ...+|+..+...+..+...+ ++ .++|++....|-..- +...+++++..|+..+..
T Consensus 24 ~~~~~a~~~~---------~~~~Ty~~l~~~~~~~a~~L~~~gi-~~~~~V~l~~~~~~~--~~~~~~a~~~~G~~~v~l 91 (523)
T PRK08316 24 YPDKTALVFG---------DRSWTYAELDAAVNRVAAALLDLGL-KKGDRVAALGHNSDA--YALLWLACARAGAVHVPV 91 (523)
T ss_pred CCCCeEEEEC---------CceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEec
Confidence 4566776532 15689999888776665543 56 788998888877663 234488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+....++.+...+++.++..++..+.....+.+
T Consensus 92 ~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~ 124 (523)
T PRK08316 92 NFMLTGEELAYILDHSGARAFLVDPALAPTAEA 124 (523)
T ss_pred ccccCHHHHHHHHHhCCCCEEEEccchHHHHHH
Confidence 876656888899999999999988877666543
No 148
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=84.00 E-value=20 Score=32.72 Aligned_cols=96 Identities=6% Similarity=-0.032 Sum_probs=71.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. . +-.+|++.+...+..+... .++ ..+|++....|-.-- .+..+++++..|+..+..
T Consensus 18 ~~~~~a~~~--~-------~~~~Ty~~l~~~~~~~a~~L~~~gv-~~g~~V~l~~~~~~~--~~~~~la~~~~G~~~v~l 85 (513)
T PRK07656 18 FGDKEAYVF--G-------DQRLTYAELNARVRRAAAALAALGI-GKGDRVAIWAPNSPH--WVIAALGALKAGAVVVPL 85 (513)
T ss_pred CCCCeEEEe--C-------CCceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCChH--HHHHHHHHHhcCeEEEec
Confidence 456777654 1 2358999998877666554 356 788999888877643 334478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....+..+.+.+++.++..+...+.....+
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 116 (513)
T PRK07656 86 NTRYTADEAAYILARGDAKALFVLGLFLGVD 116 (513)
T ss_pred CcccCHHHHHHHHhhcCceEEEEchhhHHHH
Confidence 8766678888999999999998887765544
No 149
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=83.48 E-value=20 Score=34.20 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
++.++++.-..+ .+ ....+|++.+...+..+... .++ ..+|++...+|..--. +..+++++..|+..+...
T Consensus 75 ~~~~A~~~~~~~-~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GDrV~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 148 (647)
T PTZ00237 75 RDQDALIYECPY-LK--KTIKLTYYQLYEKVCEFSRVLLNLNI-SKNDNVLIYMANTLEP--LIAMLSCARIGATHCVLF 148 (647)
T ss_pred CCceEEEEEcCC-CC--ceEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHHhCcEEEeeC
Confidence 566676543221 11 23579999999887776665 477 8999999999987633 344889999999988887
Q ss_pred CccchhHHHHHhhhcCCcEEEech
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
....++.+...++..++.+++...
T Consensus 149 ~~~~~~~l~~~l~~~~~~~li~~~ 172 (647)
T PTZ00237 149 DGYSVKSLIDRIETITPKLIITTN 172 (647)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcc
Confidence 766679999999999999998764
No 150
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=83.02 E-value=24 Score=29.63 Aligned_cols=81 Identities=15% Similarity=0.019 Sum_probs=57.5
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC----CHHHHHHHH
Q psy2835 18 IGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN----SPEACLHCL 93 (305)
Q Consensus 18 ~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~----~~~~~~~~l 93 (305)
..+.+..+-.+=+.+ +-.+|..|++.|. .|.+++.+......- .+...|..+..++-.. ..+++..++
T Consensus 5 r~Da~~~iG~GHv~R--cl~LA~~l~~~g~----~v~f~~~~~~~~~~~--~i~~~g~~v~~~~~~~~~~~d~~~~~~~l 76 (279)
T TIGR03590 5 RADASSEIGLGHVMR--CLTLARALHAQGA----EVAFACKPLPGDLID--LLLSAGFPVYELPDESSRYDDALELINLL 76 (279)
T ss_pred EecCCccccccHHHH--HHHHHHHHHHCCC----EEEEEeCCCCHHHHH--HHHHcCCeEEEecCCCchhhhHHHHHHHH
Confidence 334556677777776 7889999987653 577777776554433 3357788877775443 355788999
Q ss_pred hhCCceEEEEeCh
Q psy2835 94 VTSDANICVVEDD 106 (305)
Q Consensus 94 ~~~~~~~v~~~~~ 106 (305)
+..+|+++++|..
T Consensus 77 ~~~~~d~vV~D~y 89 (279)
T TIGR03590 77 EEEKFDILIVDHY 89 (279)
T ss_pred HhcCCCEEEEcCC
Confidence 9999999999974
No 151
>PRK07788 acyl-CoA synthetase; Validated
Probab=82.97 E-value=14 Score=34.36 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=73.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++- + .-.+|++.+...+..+...+ ++ .++|++...++-.- .++..+++++..|+..+.
T Consensus 61 ~~pd~~Al~~---~------~~~~Ty~el~~~~~~la~~L~~~gi-~~gd~V~i~~~n~~--~~~~~~la~~~~G~~~v~ 128 (549)
T PRK07788 61 RAPDRAALID---E------RGTLTYAELDEQSNALARGLLALGV-RAGDGVAVLARNHR--GFVLALYAAGKVGARIIL 128 (549)
T ss_pred HCCCceEEEE---C------CCceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCH--HHHHHHHHHHhcCCEEEE
Confidence 3567777652 1 12689999988777665554 66 78999988876654 334558999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...+++.++..+...+.....+
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 160 (549)
T PRK07788 129 LNTGFSGPQLAEVAAREGVKALVYDDEFTDLL 160 (549)
T ss_pred eCCCCCHHHHHHHHHhcCCcEEEECchhHHHH
Confidence 98776678899999999999999988766655
No 152
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=82.75 E-value=23 Score=32.46 Aligned_cols=102 Identities=8% Similarity=0.021 Sum_probs=75.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.-.. .| ..-.+|+..+...+..+... .++ .++|++....+-+.-+ +..+++++..|+.++.
T Consensus 19 ~~p~~~a~~~~~~--~~--~~~~~ty~~l~~~v~~la~~L~~~g~-~~~~~v~i~~~n~~~~--~~~~la~~~~G~~~v~ 91 (517)
T PRK08008 19 VYGHKTALIFESS--GG--VVRRYSYLELNEEINRTANLFYSLGI-RKGDKVALHLDNCPEF--IFCWFGLAKIGAIMVP 91 (517)
T ss_pred HCCCceEEEcccC--CC--ccceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEE
Confidence 3677788664321 11 12358999988877776654 467 8889999988887643 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...+++.++..++..+.....+
T Consensus 92 l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~ 123 (517)
T PRK08008 92 INARLLREESAWILQNSQASLLVTSAQFYPMY 123 (517)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEecchhHHH
Confidence 88777678999999999999998887655443
No 153
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=82.44 E-value=23 Score=33.49 Aligned_cols=97 Identities=5% Similarity=0.085 Sum_probs=72.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++... ..+| ..-.+|++.+...+..+... .++ .++|++...+|-.-- .+..+++++..|+..+..
T Consensus 70 ~p~~~Al~~~~-~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~i 143 (625)
T TIGR02188 70 RPDKVAIIWEG-DEPG--EVRKITYRELHREVCRFANVLKSLGV-KKGDRVAIYMPMIPE--AAIAMLACARIGAIHSVV 143 (625)
T ss_pred CCCCeEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCCEEecc
Confidence 56778876432 1122 24579999998887766654 467 899999999987653 344488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++..++....
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~li~~~~ 169 (625)
T TIGR02188 144 FGGFSAEALADRINDAGAKLVITADE 169 (625)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 77666789999999999999987654
No 154
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=82.36 E-value=23 Score=33.59 Aligned_cols=97 Identities=6% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++... .. ......+|++.+...+..+...+ ++ .++|++...+|-.--+ +..+++++..|+..+..
T Consensus 80 ~p~~~Al~~~~--~~-~~~~~~lTy~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~v~l 153 (637)
T PRK00174 80 RGDKVAIIWEG--DD-PGDSRKITYRELHREVCRFANALKSLGV-KKGDRVAIYMPMIPEA--AVAMLACARIGAVHSVV 153 (637)
T ss_pred CCCCeEEEEEC--CC-CCceEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEec
Confidence 56778776422 11 11356799999999887766654 67 8899999998877533 34488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++.+++....
T Consensus 154 ~~~~~~~~l~~~l~~~~~~~li~~~~ 179 (637)
T PRK00174 154 FGGFSAEALADRIIDAGAKLVITADE 179 (637)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCc
Confidence 77766789999999999999987654
No 155
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=81.80 E-value=23 Score=32.95 Aligned_cols=95 Identities=6% Similarity=0.022 Sum_probs=72.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++. . +..+|+..+...+..+...+ ++ ..+|++...+|-..-+ ...+++++..|+..+.
T Consensus 37 ~p~~~al~~--~-------~~~~Ty~el~~~~~~la~~L~~~~gi-~~gd~Vai~~~n~~~~--~~~~la~~~~Ga~~v~ 104 (562)
T PRK05677 37 FADKPAFSN--L-------GKTLTYGELYKLSGAFAAWLQQHTDL-KPGDRIAVQLPNVLQY--PVAVFGAMRAGLIVVN 104 (562)
T ss_pred CCCCeeEEE--C-------CceeeHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHHH--HHHHHHHHHcCeEEee
Confidence 567777653 1 23689999998887776644 56 8899999998887533 3448899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEK 269 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~ 269 (305)
.+.....+.+...+++.++..+.........
T Consensus 105 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~ 135 (562)
T PRK05677 105 TNPLYTAREMEHQFNDSGAKALVCLANMAHL 135 (562)
T ss_pred cCCCCCHHHHHHHHhccCceEEEEecchhhh
Confidence 8776666889999999999999876655443
No 156
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=81.61 E-value=22 Score=32.95 Aligned_cols=97 Identities=12% Similarity=0.000 Sum_probs=72.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++..- ++.++.-.+|+..+...+..+...+ ++ .++|++...+|-..-+ +..+++.+..|+..+..
T Consensus 37 ~p~~~A~~~~~---~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~-~~g~~Val~~~n~~e~--~~~~la~~~~G~~~vpl 110 (547)
T PRK13295 37 CPDKTAVTAVR---LGTGAPRRFTYRELAALVDRVAVGLARLGV-GRGDVVSCQLPNWWEF--TVLYLACSRIGAVLNPL 110 (547)
T ss_pred CCCceEEEecC---CCccccceeeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCChHH--HHHHHHHHhcCcEEecc
Confidence 56777766432 2334445799999988777666654 67 8899999988876533 34478999999999887
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++..+...+.
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (547)
T PRK13295 111 MPIFRERELSFMLKHAESKVLVVPKT 136 (547)
T ss_pred ccccCHHHHHHHHHhcCceEEEEecc
Confidence 76666788899999999999887654
No 157
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=81.49 E-value=0.7 Score=42.71 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=25.7
Q ss_pred cCCCceeEEEeccCCCCC-CcceEechhHHHH
Q psy2835 162 IATNECCTLVYTSGTEGA-SKPVMLSHDNITF 192 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~-pK~v~~s~~~l~~ 192 (305)
..++.+.+...||||||. ||-+++|.+.+..
T Consensus 77 L~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 77 LTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp TSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 356778999999999999 9999999998766
No 158
>PRK13383 acyl-CoA synthetase; Provisional
Probab=80.99 E-value=18 Score=33.18 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=72.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. .+ -.+|+..+...+..+...+ ++ .++|++...++-+- ..+..+++.+..|+..+..
T Consensus 48 ~p~~~a~~~--~~-------~~lTy~el~~~~~~la~~L~~~gi-~~g~~V~i~~~~~~--~~~~~~la~~~~G~v~vpl 115 (516)
T PRK13383 48 WPGRTAIID--DD-------GALSYRELQRATESLARRLTRDGV-APGRAVGVMCRNGR--GFVTAVFAVGLLGADVVPI 115 (516)
T ss_pred CCCCcEEEe--CC-------CcEeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCH--HHHHHHHHHHHhCeEEEEc
Confidence 566777653 11 1589999988777766654 56 78999888887654 3344478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++.+...+++.++..+...+...+.+.
T Consensus 116 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 147 (516)
T PRK13383 116 STEFRSDALAAALRAHHISTVVADNEFAERIA 147 (516)
T ss_pred CccCCHHHHHHHHhcCCCCEEEEchhHHHHHH
Confidence 87766789999999999999998887665543
No 159
>PLN02654 acetate-CoA ligase
Probab=80.88 E-value=30 Score=33.15 Aligned_cols=98 Identities=12% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.-.. -.| ....+|++.|...+..+... .++ +++|++...+|-.-- .+..+++++..|+..+.+
T Consensus 102 ~~~~~Al~~~~~-~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GdrV~i~~pn~~e--~v~a~lA~~~~Gav~vpv 175 (666)
T PLN02654 102 NGDKIAIYWEGN-EPG--FDASLTYSELLDRVCQLANYLKDVGV-KKGDAVVIYLPMLME--LPIAMLACARIGAVHSVV 175 (666)
T ss_pred CCCCEEEEEEcC-CCC--ceEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEec
Confidence 457777653221 111 23568999999887776654 467 899999999988653 344588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
.....++.+...++..++.++......
T Consensus 176 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 202 (666)
T PLN02654 176 FAGFSAESLAQRIVDCKPKVVITCNAV 202 (666)
T ss_pred CCCCCHHHHHHHHHhcCceEEEEcCcc
Confidence 776667899999999999999876543
No 160
>PLN03013 cysteine synthase
Probab=80.75 E-value=31 Score=31.04 Aligned_cols=73 Identities=10% Similarity=-0.091 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 34 YAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 34 ~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+..+.....+.| +.+|....+....+..-+.+.++|...|..+..+=|....++....++..+++++++++.
T Consensus 157 ~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 157 IGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCC
Confidence 3444444555666 478866667777777788888888889988877777777788889999999999999754
No 161
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=80.56 E-value=31 Score=32.44 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=73.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.- .-.+|+..+...+..+... .++ .++|++...++-..- ++..+++++..|+..+.
T Consensus 49 ~~p~~~Ai~~~---------~~~~Ty~eL~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~--~v~~~lA~~~~G~~~v~ 116 (600)
T PRK08279 49 RHPDRPALLFE---------DQSISYAELNARANRYAHWAAARGV-GKGDVVALLMENRPE--YLAAWLGLAKLGAVVAL 116 (600)
T ss_pred hCCCCcEEEeC---------CCcccHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEee
Confidence 35677776641 2368999998877666554 466 788999998877653 34458899999999988
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+.....+.+...+++.++..++........+.
T Consensus 117 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 149 (600)
T PRK08279 117 LNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFE 149 (600)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 877665688889999999999998887666553
No 162
>PRK13391 acyl-CoA synthetase; Provisional
Probab=80.48 E-value=40 Score=30.88 Aligned_cols=100 Identities=5% Similarity=0.034 Sum_probs=75.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++...+| -.+|+..+...+..+...+ ++ .+++++...++-..-+ ...+++.+..|+..+.
T Consensus 9 ~~p~~~a~~~~~~~-------~~~ty~~l~~~~~~la~~L~~~g~-~~~~~V~v~~~~~~~~--~~~~~a~~~~G~~~~~ 78 (511)
T PRK13391 9 TTPDKPAVIMASTG-------EVVTYRELDERSNRLAHLFRSLGL-KRGDHVAIFMENNLRY--LEVCWAAERSGLYYTC 78 (511)
T ss_pred hCCCceEEEecCCC-------CEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHHhccEEec
Confidence 35677776654332 2599999988777666654 56 7889998888877633 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+....+..+...+++.++..+...+.....+.
T Consensus 79 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~ 111 (511)
T PRK13391 79 VNSHLTPAEAAYIVDDSGARALITSAAKLDVAR 111 (511)
T ss_pred cccccCHHHHHHHHhccCCcEEEEchhhHHHHH
Confidence 877766788899999999999988887665543
No 163
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=80.44 E-value=21 Score=32.55 Aligned_cols=85 Identities=5% Similarity=-0.050 Sum_probs=65.9
Q ss_pred eEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcE
Q psy2835 183 VMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHV 259 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~ 259 (305)
-.+|+..+...+...... .++ +++|++...++-+.-. . ..+++++..|+..+..+.......+...+++.+++.
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~-~~~~~V~i~~~~~~~~-~-~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGL-REGDVVAILLENNPEF-F-EVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKV 86 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEeCCCHHH-H-HHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCE
Confidence 358888888877665554 457 8899999988877533 3 338999999999998877665688889999999999
Q ss_pred EEechHHHHHH
Q psy2835 260 FLAVPRVWEKI 270 (305)
Q Consensus 260 ~~~~P~~~~~l 270 (305)
+...+.....+
T Consensus 87 ii~~~~~~~~~ 97 (502)
T PRK08276 87 LIVSAALADTA 97 (502)
T ss_pred EEEccchhhHH
Confidence 99887766554
No 164
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=80.37 E-value=16 Score=33.85 Aligned_cols=85 Identities=7% Similarity=-0.001 Sum_probs=69.2
Q ss_pred EechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEec
Q psy2835 184 MLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
.+|++.+...+..+...+.- .++|++...+|-+.- ++..+++++..|+..+.++.....+.+...++..++..+...
T Consensus 45 ~~Ty~el~~~~~~lA~~L~~-~~gd~Val~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~ 121 (539)
T PRK06334 45 KLSYNQVRKAVIALATKVSK-YPDQHIGIMMPASAG--AYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTS 121 (539)
T ss_pred cccHHHHHHHHHHHHHHHhh-ccCCeEEEEcCCchH--HHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEeh
Confidence 48999999999888888766 688999988887653 334478999999999988776656889999999999999988
Q ss_pred hHHHHHHH
Q psy2835 264 PRVWEKIH 271 (305)
Q Consensus 264 P~~~~~l~ 271 (305)
...+..+.
T Consensus 122 ~~~~~~~~ 129 (539)
T PRK06334 122 KQLMQHLA 129 (539)
T ss_pred HHHHHHHh
Confidence 77666553
No 165
>PRK07798 acyl-CoA synthetase; Validated
Probab=80.37 E-value=39 Score=30.99 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=72.0
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. ++-.+|+..+...+..+...+ ++ ..+|++...++-.- .....+++.+..|+..+..
T Consensus 16 ~p~~~a~~~---------~~~~~ty~el~~~~~~la~~L~~~g~-~~~~~v~v~~~n~~--~~~~~~~a~~~~G~~~v~l 83 (533)
T PRK07798 16 VPDRVALVC---------GDRRLTYAELEERANRLAHYLIAQGL-GPGDHVGIYARNRI--EYVEAMLGAFKARAVPVNV 83 (533)
T ss_pred CCCceEEEE---------CCceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCH--HHHHHHHHHHhcCeEEEec
Confidence 456777654 234699999888777665554 56 78898888876654 3344478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++.+...+++.++..++..+.....+.
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 115 (533)
T PRK07798 84 NYRYVEDELRYLLDDSDAVALVYEREFAPRVA 115 (533)
T ss_pred CcCCCHHHHHHHHhhcCCCEEEEchhhHHHHH
Confidence 87766788889999999999988876655543
No 166
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=80.09 E-value=33 Score=32.72 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.... .| ....+|++.+...+..+...+ ++ .++|++...+|-.-- .+..+++++..|+..+.+
T Consensus 97 ~~~~~Al~~~~~--~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~v~~~lA~~~~Gav~v~l 169 (655)
T PRK03584 97 RDDRPAIIFRGE--DG--PRRELSWAELRRQVAALAAALRALGV-GPGDRVAAYLPNIPE--TVVAMLATASLGAIWSSC 169 (655)
T ss_pred CCCCeEEEEECC--CC--ceEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCcEEEee
Confidence 456777654322 22 235799999998877665554 67 889999999987653 334488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.....++.+...++..++.++.....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (655)
T PRK03584 170 SPDFGVQGVLDRFGQIEPKVLIAVDG 195 (655)
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEccc
Confidence 77666788999999999999887654
No 167
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=79.72 E-value=18 Score=33.02 Aligned_cols=84 Identities=6% Similarity=0.062 Sum_probs=65.6
Q ss_pred EechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|++.+...+......+ ++ ..++++...++-+.-+ ...+++++..|+..+..+....++.+...+++.++..+
T Consensus 25 ~~ty~~l~~~v~~~a~~l~~~g~-~~~~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~ 101 (515)
T TIGR03098 25 TLTYAALSERVLALASGLRGLGL-ARGERVAIYLDKRLET--VTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLL 101 (515)
T ss_pred eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEE
Confidence 689999988776655543 46 7888998888776633 33478999999999988877667899999999999999
Q ss_pred EechHHHHHH
Q psy2835 261 LAVPRVWEKI 270 (305)
Q Consensus 261 ~~~P~~~~~l 270 (305)
+..+..+..+
T Consensus 102 i~~~~~~~~~ 111 (515)
T TIGR03098 102 VTSSERLDLL 111 (515)
T ss_pred EEccchhhhh
Confidence 8887666554
No 168
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=79.15 E-value=30 Score=28.68 Aligned_cols=80 Identities=9% Similarity=0.005 Sum_probs=52.6
Q ss_pred cchHHHHHHHHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHc------C--CeEEecCCCC---CHHHHHHH
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYA------G--GFAAGMYTTN---SPEACLHC 92 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~------G--~~~v~i~~~~---~~~~~~~~ 92 (305)
+++..+...+.+++.+.+.+.+ +.+|++|++...-+.++.+++..+... | ..++-++... +.+.+..+
T Consensus 3 ~~~~~~~~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~~ 82 (258)
T PRK10696 3 YEFNKLQKRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPEY 82 (258)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHHH
Confidence 3444455444556777777776 578999999999999999887777442 2 3555566543 33445666
Q ss_pred HhhCCceEEEEe
Q psy2835 93 LVTSDANICVVE 104 (305)
Q Consensus 93 l~~~~~~~v~~~ 104 (305)
.+..+..+.+.+
T Consensus 83 ~~~lgI~~~v~~ 94 (258)
T PRK10696 83 LESLGVPYHIEE 94 (258)
T ss_pred HHHhCCCEEEEE
Confidence 677776666655
No 169
>PRK11761 cysM cysteine synthase B; Provisional
Probab=79.04 E-value=21 Score=30.34 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 35 AGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 35 ~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+..+...+.+.| +.+|+.|+. ...+..-..+.++|...|..+..+-|...+++....++..++++++++.
T Consensus 47 a~~~~~~a~~~g~~~~g~~vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 47 ALSMIVQAEKRGEIKPGDTLIE-ATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred HHHHHHHHHHcCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 444555556666 467766544 5666777778888889998888777776667888899999999999986
No 170
>PRK08315 AMP-binding domain protein; Validated
Probab=78.90 E-value=27 Score=32.44 Aligned_cols=93 Identities=8% Similarity=-0.007 Sum_probs=69.5
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.... ...+|++.+...+..+...+ ++ .+++++....|-... ++..+++++..|+..+..
T Consensus 29 ~~~~~ai~~~~~-------~~~~Ty~~l~~~~~~~a~~L~~~gi-~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 29 YPDREALVYRDQ-------GLRWTYREFNEEVDALAKGLLALGI-EKGDRVGIWAPNVPE--WVLTQFATAKIGAILVTI 98 (559)
T ss_pred CCCCeEEEEcCC-------CeEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCChH--HHHHHHHHHHhCeEEEec
Confidence 456677654322 23589999988776665543 56 788998888877653 344589999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
+.......+...+++.+++.+...+.
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~~~ 124 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAADG 124 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecc
Confidence 87766788999999999999887654
No 171
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=78.88 E-value=21 Score=33.02 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=73.5
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++... ..+|+..+...+..+...+ ++ ..++++...++-.- ..+..+++++..|+..+.
T Consensus 23 ~~~~~a~~~~~---------~~~Ty~~l~~~v~~~a~~L~~~~g~-~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~ 90 (546)
T PRK08314 23 YPDKTAIVFYG---------RAISYRELLEEAERLAGYLQQECGV-RKGDRVLLYMQNSP--QFVIAYYAILRANAVVVP 90 (546)
T ss_pred cCCCcceeecC---------ceecHHHHHHHHHHHHHHHHHhhCC-CCCCEEEEECCCCh--HHHHHHHHHHHcCcEEee
Confidence 45666665421 2589999888776655543 67 88899988888654 344558999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....+..+...+++.+++.+...+.....+.+
T Consensus 91 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 124 (546)
T PRK08314 91 VNPMNREEELAHYVTDSGARVAIVGSELAPKVAP 124 (546)
T ss_pred cCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHH
Confidence 8877667899999999999999988877665543
No 172
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=78.63 E-value=24 Score=32.69 Aligned_cols=98 Identities=9% Similarity=0.090 Sum_probs=71.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++-.. . +..+|+..+...+..+...+ ++ .++|++...+|-..-+ ...+++++..|+..+..
T Consensus 41 ~p~~~a~~~~~---~----~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 110 (546)
T PLN02330 41 YADKVAFVEAV---T----GKAVTYGEVVRDTRRFAKALRSLGL-RKGQVVVVVLPNVAEY--GIVALGIMAAGGVFSGA 110 (546)
T ss_pred CCCccEEEecC---C----CCcccHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCchHH--HHHHHHHHHhCcEeccC
Confidence 45677765321 1 24689999988877766543 56 7889998888776633 34478999999998877
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....+..+...+++.++..+...+..+..+
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 141 (546)
T PLN02330 111 NPTALESEIKKQAEAAGAKLIVTNDTNYGKV 141 (546)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEccchhhhH
Confidence 7666568889999999999998877655543
No 173
>PRK07514 malonyl-CoA synthase; Validated
Probab=78.33 E-value=26 Score=31.93 Aligned_cols=87 Identities=8% Similarity=0.044 Sum_probs=68.3
Q ss_pred ceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCc
Q psy2835 182 PVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPH 258 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt 258 (305)
+..+|+..+...+..+...+ ++ .++|++...++-.. .....+++++..|+..+..+....+..+...+++.+++
T Consensus 26 ~~~~Ty~eL~~~~~~la~~L~~~g~-~~gd~v~i~~~~~~--e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~ 102 (504)
T PRK07514 26 GLRYTYGDLDAASARLANLLVALGV-KPGDRVAVQVEKSP--EALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPA 102 (504)
T ss_pred CCEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCH--HHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCc
Confidence 45799999988777666544 66 88999988888764 33455789999999999887766678888999999999
Q ss_pred EEEechHHHHHHH
Q psy2835 259 VFLAVPRVWEKIH 271 (305)
Q Consensus 259 ~~~~~P~~~~~l~ 271 (305)
.+...+.....+.
T Consensus 103 ~ii~~~~~~~~~~ 115 (504)
T PRK07514 103 LVVCDPANFAWLS 115 (504)
T ss_pred EEEEccchhHHHH
Confidence 9988877766553
No 174
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=78.11 E-value=27 Score=32.37 Aligned_cols=97 Identities=6% Similarity=-0.094 Sum_probs=74.3
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. . .-.+|++.+...+..+...+ ++ .+++++....|-..-+ +..+++++..|+..+..
T Consensus 34 ~p~~~a~~~--~-------~~~~Ty~el~~~v~~la~~L~~~gi-~~g~~V~v~~~n~~~~--~~~~lA~~~~G~~~vpl 101 (542)
T PRK06155 34 YPDRPLLVF--G-------GTRWTYAEAARAAAAAAHALAAAGV-KRGDRVALMCGNRIEF--LDVFLGCAWLGAIAVPI 101 (542)
T ss_pred CCCCeEEEe--C-------CccccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCChHH--HHHHHHHHHhCCEEEEe
Confidence 566777653 1 13689999988877766654 56 7889988888776533 34489999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++++...+++.+++.++..+.....+.
T Consensus 102 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~ 133 (542)
T PRK06155 102 NTALRGPQLEHILRNSGARLLVVEAALLAALE 133 (542)
T ss_pred ccccCHHHHHHHHHhcCceEEEEChhhHHHHH
Confidence 87766789999999999999999887766553
No 175
>PLN02246 4-coumarate--CoA ligase
Probab=78.02 E-value=25 Score=32.47 Aligned_cols=98 Identities=8% Similarity=0.078 Sum_probs=72.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. +. ++-.+|+..+...+..+... .++ .++|++...++-+. .....+++++..|+..+..
T Consensus 36 ~~~~~a~~~---~~----~~~~~ty~el~~~~~~la~~L~~~g~-~~gd~V~i~~~~~~--~~~~~~la~~~~G~~~v~l 105 (537)
T PLN02246 36 FSDRPCLID---GA----TGRVYTYADVELLSRRVAAGLHKLGI-RQGDVVMLLLPNCP--EFVLAFLGASRRGAVTTTA 105 (537)
T ss_pred CCCCeEEEe---cC----CCceeeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCCh--HHHHHHHHHHHcCEEEecC
Confidence 567777653 11 22468999998877666554 366 88999988887664 3344478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....+..+...++..++..+.........+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 136 (537)
T PLN02246 106 NPFYTPAEIAKQAKASGAKLIITQSCYVDKL 136 (537)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Confidence 8776678888999999999988876655544
No 176
>PRK08162 acyl-CoA synthetase; Validated
Probab=77.96 E-value=22 Score=32.92 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=75.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. + +..+|+..+...+..+...+ ++ ..+|++...+|-..- ++..+++.+..|+..+.
T Consensus 30 ~~~~~~a~~~---~------~~~~ty~~L~~~~~~~a~~L~~~g~-~~g~~v~i~~~~~~~--~~~~~lA~~~~G~~~vp 97 (545)
T PRK08162 30 VYPDRPAVIH---G------DRRRTWAETYARCRRLASALARRGI-GRGDTVAVLLPNIPA--MVEAHFGVPMAGAVLNT 97 (545)
T ss_pred HCCCCeEEEE---C------CeEEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCchH--HHHHHHHHHHhCcEEec
Confidence 3566776543 1 13589999998877766654 67 889999998888763 34458899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+....+..+...+++.+++.++..+..+..+.
T Consensus 98 l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~ 130 (545)
T PRK08162 98 LNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAR 130 (545)
T ss_pred cccccChHHHHHHHHhCCCeEEEEccchhhHHH
Confidence 887766789999999999999999887766553
No 177
>PLN02614 long-chain acyl-CoA synthetase
Probab=77.95 E-value=67 Score=30.83 Aligned_cols=105 Identities=7% Similarity=-0.108 Sum_probs=75.2
Q ss_pred cCCCceeEEEec--cCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 162 IATNECCTLVYT--SGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 162 ~~~~~~~~i~~T--SGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
..++.++++... .|..| .-..+|++.+...+..+... .++ .++|++...++-+.- .+...++++..|+..
T Consensus 57 ~~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~v~~lA~~L~~~Gv-~~Gd~Vai~~~n~~e--~~~~~lA~~~~Gav~ 131 (666)
T PLN02614 57 KYPNNPMLGRREIVDGKPG--KYVWQTYQEVYDIVIKLGNSLRSVGV-KDEAKCGIYGANSPE--WIISMEACNAHGLYC 131 (666)
T ss_pred hCCCCCeEEEecccCCCCC--CcEEeEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEE
Confidence 356777765321 12112 12457999998877766654 467 889999888887653 344478999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+.......++.+...++..++.+++.....+..+.
T Consensus 132 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 166 (666)
T PLN02614 132 VPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELF 166 (666)
T ss_pred EEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 98877766789999999999999998876655543
No 178
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=77.95 E-value=40 Score=31.31 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=71.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +..+|+..+...+..+...+ ++ .++|++...++-..-. ...+++++..|+..+..
T Consensus 36 ~p~~~a~~~~---------~~~lTy~~l~~~~~~~a~~L~~~gi-~~gd~V~i~~~n~~~~--~~~~la~~~~G~~~v~v 103 (557)
T PRK07059 36 YADRPAFICM---------GKAITYGELDELSRALAAWLQSRGL-AKGARVAIMMPNVLQY--PVAIAAVLRAGYVVVNV 103 (557)
T ss_pred cCCCceEEEc---------CceeeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCCHHH--HHHHHHHHhcCeEEecc
Confidence 5566676531 24789999988877666553 56 7889998888776533 34478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEK 269 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~ 269 (305)
+....+..+...+++.+++.+.........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 133 (557)
T PRK07059 104 NPLYTPRELEHQLKDSGAEAIVVLENFATT 133 (557)
T ss_pred CcccCHHHHHHHHHccCceEEEEchhhHHH
Confidence 776657888999999999998887665443
No 179
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=77.56 E-value=47 Score=29.26 Aligned_cols=71 Identities=8% Similarity=-0.100 Sum_probs=53.8
Q ss_pred HHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 35 AGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 35 ~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+..+.....+.| +.+|....+....+..-....++|...|..+..+-|.....+....++..++++++++.
T Consensus 94 A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~ 165 (368)
T PLN02556 94 ALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDP 165 (368)
T ss_pred HHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 333444444555 57775555557777888888889999998888887777777888999999999999974
No 180
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=77.54 E-value=36 Score=31.76 Aligned_cols=100 Identities=8% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.- .+. ....+|++.+...+..+... .++ .++|++...++-+.- .+..+++++..|+.++..
T Consensus 57 ~~~~~a~~~~-~~~----~~~~~Ty~el~~~v~~~A~~L~~~gv-~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~vpl 128 (570)
T PRK04319 57 RKDKVALRYL-DAS----RKEKYTYKELKELSNKFANVLKELGV-EKGDRVFIFMPRIPE--LYFALLGALKNGAIVGPL 128 (570)
T ss_pred CCCceEEEEE-CCC----CceeecHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCcEEccc
Confidence 3466665432 222 23478999998877766554 467 889999888886653 344588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.....++.+...++..+++.+...+..+...
T Consensus 129 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 159 (570)
T PRK04319 129 FEAFMEEAVRDRLEDSEAKVLITTPALLERK 159 (570)
T ss_pred ccccCHHHHHHHHHccCCcEEEEChhhhhcc
Confidence 7766678899999999999999888776543
No 181
>PRK09088 acyl-CoA synthetase; Validated
Probab=77.31 E-value=39 Score=30.67 Aligned_cols=93 Identities=9% Similarity=-0.011 Sum_probs=68.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++....| ..+|++.+...+..+...+ ++ ..+|++...++-..-+ +..+++++..|+..+..
T Consensus 8 ~p~~~a~~~~~~~-------~~~ty~~l~~~v~~~a~~l~~~g~-~~~~~v~i~~~~~~~~--~~~~la~~~~G~~~v~~ 77 (488)
T PRK09088 8 QPQRLAAVDLALG-------RRWTYAELDALVGRLAAVLRRRGC-VDGERLAVLARNSVWL--VALHFACARVGAIYVPL 77 (488)
T ss_pred CCCceEEEecCCC-------cEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHHcCeEEEee
Confidence 5666665432222 3689999988777665543 56 7889998888877633 34478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
+....++.+...+++.+++.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~ 103 (488)
T PRK09088 78 NWRLSASELDALLQDAEPRLLLGDDA 103 (488)
T ss_pred CccCCHHHHHHHHHhCCCCEEEEcch
Confidence 77766788889999999999877653
No 182
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=77.14 E-value=45 Score=31.88 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=71.0
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
.++++++... .+|. ...+|++.+...+..+...+ ++ ..+|++...+|-.--. +..+++++..|+..+...
T Consensus 98 ~~~~a~~~~~--~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~GdrV~i~~~n~~e~--~~~~lA~~~~Gav~vp~~ 170 (652)
T TIGR01217 98 GTEPALLYVD--ETHE--PAPVTWAELRRQVASLAAALRALGV-RPGDRVSGYLPNIPQA--VVAMLATASVGAIWSSCS 170 (652)
T ss_pred CCCeEEEEEC--CCCC--eeEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHHhCeEEEecC
Confidence 3566665532 2232 35689999998877766654 67 8999999999987533 344789999999988887
Q ss_pred CccchhHHHHHhhhcCCcEEEechH
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
....++.+...+++.++.+++....
T Consensus 171 ~~~~~~~l~~~l~~~~~k~li~~~~ 195 (652)
T TIGR01217 171 PDFGARGVLDRFQQIEPKLLFTVDG 195 (652)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEccc
Confidence 7666789999999999999887653
No 183
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=77.08 E-value=20 Score=31.56 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=54.0
Q ss_pred hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 201 FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 201 ~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.++ ..+|++...+|-..- +...+++++..|+.++..+....++.+...+++.+++.+...+.....+
T Consensus 20 ~g~-~~gd~v~l~~~n~~~--~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 86 (408)
T TIGR01733 20 GGV-GPGDRVAVLLERSAE--LVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDSALASRL 86 (408)
T ss_pred hCC-CCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcCchhhhc
Confidence 456 889999998888743 3444889999999999888766678888999999999999988766544
No 184
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=77.07 E-value=50 Score=31.33 Aligned_cols=96 Identities=9% Similarity=0.125 Sum_probs=71.0
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +..+|. .-.+|++.|...+..+... .++ .++|++...+|-.- ..+..+++++..|+..+..
T Consensus 65 ~p~~~Al~~~-~~~~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~Gd~V~i~~~n~~--e~v~~~lA~~~~Gav~vpl 138 (628)
T TIGR02316 65 RGEQLALVTV-SSETGQ--ERTLTYRQLHREVNVFASALRALGV-GRGDRVLIYMPMIA--EAVFAMLACARIGAIHSVV 138 (628)
T ss_pred CCCCeEEEEE-cCCCCc--eEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCH--HHHHHHHHHHHhCCEEEec
Confidence 4567776543 222232 2468999998877766555 467 89999999998875 2344588999999998888
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...++..++.+++...
T Consensus 139 ~~~~~~~~l~~~l~~~~~~~li~~~ 163 (628)
T TIGR02316 139 FGGFASHSLALRIDDATPKLIVSAD 163 (628)
T ss_pred CCCCCHHHHHHHHHhcCceEEEECC
Confidence 7666578899999999999988764
No 185
>PRK07529 AMP-binding domain protein; Validated
Probab=76.95 E-value=42 Score=31.91 Aligned_cols=97 Identities=6% Similarity=0.003 Sum_probs=68.6
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++....+.. ..+...+|++.+...+..+... .++ .++|++...+|-..- .+..+++++..|. ++.
T Consensus 37 ~~p~~~Al~~~~~~~~-~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gi-~~p 111 (632)
T PRK07529 37 RHPDAPALSFLLDADP-LDRPETWTYAELLADVTRTANLLHSLGV-GPGDVVAFLLPNLPE--THFALWGGEAAGI-ANP 111 (632)
T ss_pred HCCCCceEEeecccCC-CCCCceeEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCE-EEe
Confidence 3667888776543321 2245679999998877766554 467 889999999987653 3344778888885 444
Q ss_pred eCCccchhHHHHHhhhcCCcEEEec
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
+.....++.+...+++.++..+...
T Consensus 112 i~~~~~~~~i~~~l~~~~~~~li~~ 136 (632)
T PRK07529 112 INPLLEPEQIAELLRAAGAKVLVTL 136 (632)
T ss_pred CCCcCCHHHHHHHHHhcCCcEEEEe
Confidence 4444447899999999999998875
No 186
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=76.91 E-value=26 Score=32.64 Aligned_cols=96 Identities=11% Similarity=0.065 Sum_probs=73.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. | -.+|++.+...+......+ ++ ..+|++...+|-..- .+..+++++..|+..+..
T Consensus 45 ~p~~~a~~~~-----~----~~~Ty~ql~~~~~~~A~~L~~~gi-~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l 112 (573)
T PRK05605 45 FGDRPALDFF-----G----ATTTYAELGKQVRRAAAGLRALGV-RPGDRVAIVLPNCPQ--HIVAFYAVLRLGAVVVEH 112 (573)
T ss_pred CCCCeEEEeC-----C----CcccHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEeec
Confidence 5677776541 1 2589999988777766544 56 788999998887653 344588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....++.+...+++.++..++..+.....+
T Consensus 113 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 143 (573)
T PRK05605 113 NPLYTAHELEHPFEDHGARVAIVWDKVAPTV 143 (573)
T ss_pred CcCCCHHHHHHHHhccCCcEEEechhhHHHH
Confidence 7776678999999999999999877766554
No 187
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.57 E-value=51 Score=30.59 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=71.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++...-+. .+|++.+...+......+ ++ .++|++...+|=+.-+ +..+++++..|+..+.
T Consensus 23 ~~~~~~a~~~~~~~~-------~~Ty~el~~~~~~~A~~L~~~~v-~~gdrVail~~N~~e~--~~~~~a~~~~Gav~vp 92 (534)
T COG0318 23 RNPDRPALIFLGRGG-------RLTYRELDRRANRLAAALQALGV-KPGDRVAILLPNSPEF--LIAFLAALRAGAVAVP 92 (534)
T ss_pred hCCCceEEEEcCCCc-------eeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHhcCEEEee
Confidence 356777766543333 899999999888776654 34 6799988888876533 4457899999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
......+.++...++..++..++....
T Consensus 93 ln~~~~~~~l~~~l~~~~~~~~~~~~~ 119 (534)
T COG0318 93 LNPRLTPRELAYILNDAGAKVLITSAE 119 (534)
T ss_pred cCcccCHHHHHHHHHhcCCeEEEEccc
Confidence 987766788888888889999888776
No 188
>PRK07470 acyl-CoA synthetase; Validated
Probab=76.26 E-value=46 Score=30.62 Aligned_cols=96 Identities=4% Similarity=-0.026 Sum_probs=71.0
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. + ...+|++.+...+...... .++ ..++++....+-.. ..+..+++++..|+..+..
T Consensus 20 ~p~~~a~~~---~------~~~~Ty~el~~~~~~~a~~L~~~g~-~~g~~v~i~~~~~~--~~~~~~lA~~~~G~~~v~l 87 (528)
T PRK07470 20 FPDRIALVW---G------DRSWTWREIDARVDALAAALAARGV-RKGDRILVHSRNCN--QMFESMFAAFRLGAVWVPT 87 (528)
T ss_pred CCCceEEEE---C------CccccHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCH--HHHHHHHHHHhCCeEEEec
Confidence 456666543 1 2368999988877665554 356 78899888877765 3344578999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+.....+.+...+++.+++.++..+...+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 118 (528)
T PRK07470 88 NFRQTPDEVAYLAEASGARAMICHADFPEHA 118 (528)
T ss_pred CccCCHHHHHHHHHhcCceEEEEcchhHHHH
Confidence 8776678899999999999998887655443
No 189
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=76.25 E-value=33 Score=31.77 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=68.3
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. . +| ..+|+..+...+..+...+ ++ .++|++...+|-.- ..+..+++++..|+.++.
T Consensus 35 ~~pd~~a~~~-~---~~----~~~Ty~~l~~~v~~la~~l~~~G~-~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~ 103 (547)
T PRK06087 35 AMPDKIAVVD-N---HG----ASYTYSALDHAASRLANWLLAKGI-EPGDRVAFQLPGWC--EFTIIYLACLKVGAVSVP 103 (547)
T ss_pred HCCCceEEEc-C---CC----CEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCH--HHHHHHHHHHHcCcEEec
Confidence 3567777653 1 12 4689999988877766654 66 88999999887765 334558999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEec
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
.+....++.+...++..++.+++..
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~l~~~ 128 (547)
T PRK06087 104 LLPSWREAELVWVLNKCQAKMFFAP 128 (547)
T ss_pred cchhcCHHHHHHHHHhcCCeEEEEe
Confidence 8776656888899999999888764
No 190
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=76.06 E-value=29 Score=32.22 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=72.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh----hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++.. | -.+|++.+...+..+... .++ ..+|++...+|-..- +...+++++..|+..+.
T Consensus 38 ~~~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~~g~-~~g~~V~i~~~~~~~--~~~~~lA~~~~G~~~v~ 105 (560)
T PRK08751 38 FADRPAYHSF--G-------KTITYREADQLVEQFAAYLLGELQL-KKGDRVALMMPNCLQ--YPIATFGVLRAGLTVVN 105 (560)
T ss_pred CCCCceEEEC--C-------ceeeHHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCeEEec
Confidence 5677776632 2 258999998877776654 466 888999988877653 34457899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.++...+..+...+++.+++.+.........+
T Consensus 106 l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 137 (560)
T PRK08751 106 VNPLYTPRELKHQLIDSGASVLVVIDNFGTTV 137 (560)
T ss_pred cCccCCHHHHHHHHHhcCCeEEEEcchhHHHH
Confidence 87666568888999999999998877665544
No 191
>PRK06164 acyl-CoA synthetase; Validated
Probab=76.03 E-value=32 Score=31.79 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=69.2
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. +.-.+|++.+...+..+... .++ ..+|++...++-+.-+ +..+++++..|+..+.
T Consensus 22 ~~p~~~a~~~---------~~~~~Ty~~L~~~~~~~a~~L~~~g~-~~g~~V~i~~~n~~~~--~~~~la~~~~G~~~v~ 89 (540)
T PRK06164 22 ARPDAVALID---------EDRPLSRAELRALVDRLAAWLAAQGV-RRGDRVAVWLPNCIEW--VVLFLACARLGATVIA 89 (540)
T ss_pred hCCCCeEEec---------CCCcccHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEe
Confidence 3567777661 12368999998877665554 466 7899999888887633 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.+.......+...+++.+++.+...+.
T Consensus 90 l~~~~~~~~l~~~i~~~~~~~ii~~~~ 116 (540)
T PRK06164 90 VNTRYRSHEVAHILGRGRARWLVVWPG 116 (540)
T ss_pred cCCCCCcHHHHHHHHhcCccEEEEccc
Confidence 887766688899999999999987655
No 192
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=75.83 E-value=31 Score=36.32 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=73.3
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++...+...+......+|++.+...+..+...+ ++ .+++++...++-+.-+ +..+++++..|+..+
T Consensus 247 ~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv-~~g~~V~i~~~~~~~~--i~~~lA~l~~G~~~v 323 (1389)
T TIGR03443 247 EKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGI-KRGDVVMIYAYRGVDL--VVAVMGVLKAGATFS 323 (1389)
T ss_pred HhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEecCCHHH--HHHHHHHHhhCcEEe
Confidence 34678888765322111112245799999999887776654 66 8899999988887533 445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEech
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.++....++.+...++..++..+....
T Consensus 324 pldp~~p~~~~~~~l~~~~~~~li~~~ 350 (1389)
T TIGR03443 324 VIDPAYPPARQTIYLSVAKPRALIVIE 350 (1389)
T ss_pred ccCCCCcHHHHHHHHHhcCCCEEEEec
Confidence 888777678888889999998877643
No 193
>PLN02479 acetate-CoA ligase
Probab=75.69 E-value=61 Score=30.25 Aligned_cols=97 Identities=8% Similarity=0.047 Sum_probs=73.7
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. |. ..+|+..+...+..+...+ ++ .++|++...+|-.-- .+..+++++..|+..+.
T Consensus 32 ~~p~~~a~~~---~~------~~~ty~eL~~~~~~lA~~L~~~g~-~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~v~ 99 (567)
T PLN02479 32 VHPTRKSVVH---GS------VRYTWAQTYQRCRRLASALAKRSI-GPGSTVAVIAPNIPA--MYEAHFGVPMAGAVVNC 99 (567)
T ss_pred hCCCceEEEE---CC------ceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCcHH--HHHHHHHHHhCCcEEEE
Confidence 3567777653 21 2589999988887776654 67 889999988886542 33447899999999988
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+.......+...+++.++..++..+..+...
T Consensus 100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 131 (567)
T PLN02479 100 VNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLA 131 (567)
T ss_pred eccccCHHHHHHHHhhcCceEEEEchhhhhHH
Confidence 87776678999999999999999988765543
No 194
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=75.55 E-value=34 Score=31.83 Aligned_cols=95 Identities=7% Similarity=0.046 Sum_probs=70.4
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++. ++..+|+..+...+..+...+ ++ .++|++...++-.-- ....+++++..|+..+.
T Consensus 37 ~p~~~a~~~---------~~~~~Ty~~l~~~~~~~a~~L~~~~gi-~~gd~V~i~~~n~~e--~~~~~la~~~~G~v~v~ 104 (562)
T PRK12492 37 FADRPAFSN---------LGVTLSYAELERHSAAFAAYLQQHTDL-VPGDRIAVQMPNVLQ--YPIAVFGALRAGLIVVN 104 (562)
T ss_pred CCCCeeEec---------CCceeeHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCeEEec
Confidence 556666542 134689999988777766544 67 889999988877653 34457899999999988
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEK 269 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~ 269 (305)
.......+.+...+++.++..+...+...+.
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 135 (562)
T PRK12492 105 TNPLYTAREMRHQFKDSGARALVYLNMFGKL 135 (562)
T ss_pred cCccCCHHHHHHHHhccCceEEEeccccchH
Confidence 8776656889999999999998876654433
No 195
>KOG1252|consensus
Probab=75.52 E-value=18 Score=31.08 Aligned_cols=79 Identities=14% Similarity=-0.016 Sum_probs=58.4
Q ss_pred HcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH-------HHHHHHHH
Q psy2835 44 KLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK-------QLEKILKV 115 (305)
Q Consensus 44 ~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~-------~~~~~~~~ 115 (305)
+.| +.+|..+.+-...+.--+...+.|...|..++..=|..-..|-..+|+..++.+|.++.+. ..+....+
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l 175 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEEL 175 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHH
Confidence 344 6889888888777777777888888888888777777766788889999999999998653 23444455
Q ss_pred hccCCCc
Q psy2835 116 KAQCPKL 122 (305)
Q Consensus 116 ~~~~~~~ 122 (305)
..+.++.
T Consensus 176 ~~~~pna 182 (362)
T KOG1252|consen 176 LNKTPNA 182 (362)
T ss_pred HHhCCCh
Confidence 5555443
No 196
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=75.39 E-value=41 Score=32.19 Aligned_cols=106 Identities=8% Similarity=-0.119 Sum_probs=75.8
Q ss_pred cCCCceeEEEe--ccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 162 IATNECCTLVY--TSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 162 ~~~~~~~~i~~--TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
..++.+++..- .-+..|. -..+|++.+...+..+...+ ++ .++|++...++-..- .+...++++..|+..
T Consensus 55 ~~p~~~al~~~~~~~~~~g~--~~~~Ty~el~~~v~~lA~~L~~~Gv-~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~ 129 (660)
T PLN02861 55 KYPNNQMLGRRQVTDSKVGP--YVWLTYKEVYDAAIRIGSAIRSRGV-NPGDRCGIYGSNCPE--WIIAMEACNSQGITY 129 (660)
T ss_pred hCCCCCeEEEEecCCCCCCC--ceEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCeE
Confidence 35566666432 1122232 24689999998887766654 67 889999888887653 234478999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+.+.....++.+...++..++.+++........+.+
T Consensus 130 vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~ 165 (660)
T PLN02861 130 VPLYDTLGANAVEFIINHAEVSIAFVQESKISSILS 165 (660)
T ss_pred EEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHH
Confidence 988777667899999999999999987766555533
No 197
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=75.37 E-value=72 Score=29.83 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=75.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++.++++. .+ . ..-.+|++.+...+..+...+ ++ .++|++...++-..-. +..+++.+..|+..+
T Consensus 22 ~~~~~~a~~~-~~----~-~~~~~Ty~el~~~~~~la~~L~~~~g~-~~gd~V~~~~~n~~e~--~~~~lA~~~~G~~~v 92 (576)
T PRK05620 22 VHGDTTVTTW-GG----A-EQEQTTFAAIGARAAALAHALHDELGI-TGDQRVGSMMYNCAEH--LEVLFAVACMGAVFN 92 (576)
T ss_pred hCCCceEEEE-cC----C-ceEEEeHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeCCCHHH--HHHHHHHHhcCCEEe
Confidence 3567777553 11 1 235789999988877766643 56 7889988888876533 344789999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
..+....+..+...++..++..+...+.....+.+
T Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 127 (576)
T PRK05620 93 PLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGE 127 (576)
T ss_pred ecccccCHHHHHHHHhccCCcEEEEChhhHHHHHH
Confidence 88776667899999999999999988876665543
No 198
>PRK12583 acyl-CoA synthetase; Provisional
Probab=75.21 E-value=44 Score=30.96 Aligned_cols=93 Identities=8% Similarity=-0.005 Sum_probs=69.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++..- .+..+|++.+...+..+...+ ++ ..++++...+|-..- ++..+++++..|+..+..
T Consensus 31 ~p~~~a~~~~~-------~~~~~Ty~~l~~~~~~~a~~L~~~gi-~~g~~V~i~~~~~~~--~~~~~~a~~~~G~~~v~l 100 (558)
T PRK12583 31 FPDREALVVRH-------QALRYTWRQLADAVDRLARGLLALGV-QPGDRVGIWAPNCAE--WLLTQFATARIGAILVNI 100 (558)
T ss_pred CCCCeEEEecC-------CCcEecHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCChH--HHHHHHHHHhhCCEEEec
Confidence 56777765421 124589999988777665543 56 788998888877653 344588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
+....++.+...+++.+++.+...+.
T Consensus 101 ~~~~~~~~~~~~l~~~~~~~ii~~~~ 126 (558)
T PRK12583 101 NPAYRASELEYALGQSGVRWVICADA 126 (558)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 87766789999999999999887764
No 199
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=75.17 E-value=63 Score=29.51 Aligned_cols=96 Identities=7% Similarity=-0.009 Sum_probs=70.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++- . .-.+|+..+...+..+... .++ +.++++...++-.. .....+++++..|+..+..
T Consensus 18 ~p~~~a~~~--~-------~~~~ty~~l~~~~~~~a~~L~~~g~-~~g~~v~l~~~~~~--~~~~~~~a~~~~G~~~v~l 85 (508)
T TIGR02262 18 RGGKTAFID--D-------ISSLSYGELEAQVRRLGAALRRLGV-KREERVLLLMLDGV--DFPIAFLGAIRAGIVPVAL 85 (508)
T ss_pred cCCceEEEe--C-------CceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCH--HHHHHHHHHHHcCcEEeec
Confidence 567777653 1 2368999888777665554 356 78888887776654 3445588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....+..+...+++.+++.+.........+
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 116 (508)
T TIGR02262 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVI 116 (508)
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEchhhHHHH
Confidence 8766678999999999999998887665544
No 200
>PRK13388 acyl-CoA synthetase; Provisional
Probab=74.92 E-value=61 Score=30.01 Aligned_cols=97 Identities=7% Similarity=-0.071 Sum_probs=70.5
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. .+..+|+..+...+..+...+ ++..++|++...++-+.- .+..+++++..|+..+.+
T Consensus 14 ~p~~~Al~~---------~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~--~v~~~lA~~~~Ga~~v~l 82 (540)
T PRK13388 14 GDDTIAVRY---------GDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPE--MLFWLAAAALGGYVLVGL 82 (540)
T ss_pred cCCceEEEE---------CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcH--HHHHHHHHHhCCCEEEEe
Confidence 456677543 123789999998887766654 331267888888876553 334488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+.....+.+...+++.++..+.........+
T Consensus 83 ~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 113 (540)
T PRK13388 83 NTTRRGAALAADIRRADCQLLVTDAEHRPLL 113 (540)
T ss_pred cccCChHHHHHHHHhcCCCEEEEChhhhHHH
Confidence 7766568899999999999999877665544
No 201
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=74.85 E-value=3.6 Score=38.55 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=25.4
Q ss_pred CCceeEEEeccCCCC-CCcceEechhHHHHH
Q psy2835 164 TNECCTLVYTSGTEG-ASKPVMLSHDNITFN 193 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~~ 193 (305)
++.+.+...|||||| ++|.+.+|.+.+-..
T Consensus 88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~ 118 (606)
T PLN02247 88 AQPITELLTSSGTSGGQPKLMPSTAEELDRK 118 (606)
T ss_pred CCCcceeeccCCCCCCceeEeeccHHHHHHH
Confidence 567788999999995 899999999887553
No 202
>KOG1250|consensus
Probab=74.69 E-value=28 Score=30.68 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHH
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILK 114 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~ 114 (305)
+......|.+.+..+| .|+ +.-+..-..+.+++.++|+.+..+=|...+....+.+++.++.+++..+. ++++.+
T Consensus 101 a~~~~~kla~~~~~~g-Via--sSaGNha~a~Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~--~deAk~ 175 (457)
T KOG1250|consen 101 AGNALQKLAKQQKKAG-VIA--SSAGNHAQAAAYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGED--WDEAKA 175 (457)
T ss_pred HHHHHHHHHHhhhcCc-eEE--ecCccHHHHHHHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEeccc--HHHHHH
Confidence 3333344444443333 333 34445567789999999999999999999999999999999999999876 455555
Q ss_pred Hhcc
Q psy2835 115 VKAQ 118 (305)
Q Consensus 115 ~~~~ 118 (305)
....
T Consensus 176 ~a~~ 179 (457)
T KOG1250|consen 176 FAKR 179 (457)
T ss_pred HHHH
Confidence 4333
No 203
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=74.53 E-value=2.3 Score=39.87 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.2
Q ss_pred CCCceeEEEeccCCC-CCCcceEechhHHH
Q psy2835 163 ATNECCTLVYTSGTE-GASKPVMLSHDNIT 191 (305)
Q Consensus 163 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~ 191 (305)
.++.+.+...||||| |++|.+.+|.+.+-
T Consensus 98 ~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 98 SSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred CCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 456778899999999 89999999997776
No 204
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=73.66 E-value=62 Score=30.68 Aligned_cols=96 Identities=7% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. .+..+| ..-.+|++.+...+..+... .++ .++|++...+|-.-- .+..+++++..|+..+..
T Consensus 66 ~p~~~A~~~-~~~~~~--~~~~~Ty~eL~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~v~~ 139 (629)
T PRK10524 66 RPEQLALIA-VSTETD--EERTYTFRQLHDEVNRMAAMLRSLGV-QRGDRVLIYMPMIAE--AAFAMLACARIGAIHSVV 139 (629)
T ss_pred CCCCeEEEE-EcCCCC--ceEEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCcEEEee
Confidence 467777654 332223 23468999998877665554 467 899999999988653 334488999999998888
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...++..++.+++...
T Consensus 140 ~~~~~~~~l~~~l~~~~~~~li~~~ 164 (629)
T PRK10524 140 FGGFASHSLAARIDDAKPVLIVSAD 164 (629)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcc
Confidence 7666678899999999999988764
No 205
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=73.46 E-value=71 Score=28.88 Aligned_cols=96 Identities=6% Similarity=0.009 Sum_probs=71.7
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. .-.+|+..+...+..+... .++ .++|++...+|-..- ++..+++.+..|+..+.
T Consensus 14 ~~p~~~a~~~~---------~~~~Ty~el~~~~~~~a~~L~~~g~-~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~ 81 (483)
T PRK03640 14 LTPDRTAIEFE---------EKKVTFMELHEAVVSVAGKLAALGV-KKGDRVALLMKNGME--MILVIHALQQLGAVAVL 81 (483)
T ss_pred hCCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHhCCcEEEe
Confidence 35677776531 1469999998877766554 356 789999998888763 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEK 269 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~ 269 (305)
++....+..+...+++.++..+.........
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 112 (483)
T PRK03640 82 LNTRLSREELLWQLDDAEVKCLITDDDFEAK 112 (483)
T ss_pred cCcCCCHHHHHHHHHhCCCCEEEEcchhhHH
Confidence 9877667888899999999988776654443
No 206
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=72.82 E-value=38 Score=30.97 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=66.4
Q ss_pred EechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|+..+...+..+... .++ .+++++...+|-.. .++..+++.+..|+..+..+.....+.+...+++.+++.+
T Consensus 11 ~~Ty~el~~~~~~la~~l~~~g~-~~g~~V~v~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i 87 (509)
T PRK12406 11 RRSFDELAQRAARAAGGLAALGV-RPGDCVALLMRNDF--AFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVL 87 (509)
T ss_pred eecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCH--HHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEE
Confidence 57888887766665554 456 78999998888775 3345588999999999988877667899999999999999
Q ss_pred EechHHHHHHH
Q psy2835 261 LAVPRVWEKIH 271 (305)
Q Consensus 261 ~~~P~~~~~l~ 271 (305)
+......+.+.
T Consensus 88 ~~~~~~~~~~~ 98 (509)
T PRK12406 88 IAHADLLHGLA 98 (509)
T ss_pred EEccchhhhhh
Confidence 98877666554
No 207
>PRK13390 acyl-CoA synthetase; Provisional
Probab=72.61 E-value=75 Score=28.97 Aligned_cols=94 Identities=13% Similarity=0.079 Sum_probs=69.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. .+| -.+|+..+...+..+...+ ++ .++|++...++-+.-. +..+++.+..|+..+..
T Consensus 10 ~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv-~~gd~V~i~~~n~~~~--~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 10 APDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGL-RTGDVVALLSDNSPEA--LVVLWAALRSGLYITAI 79 (501)
T ss_pred CCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEecc
Confidence 5667776542 122 3699999988887766654 56 7899998888877633 34489999999999888
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
+....+..+...++..++..+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~ 106 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAAL 106 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchh
Confidence 777667888889999999888776543
No 208
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=72.11 E-value=48 Score=32.05 Aligned_cols=88 Identities=8% Similarity=-0.010 Sum_probs=68.8
Q ss_pred eEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcE
Q psy2835 183 VMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHV 259 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~ 259 (305)
..+|++.+...+..+... .++ .++|++...++-..- .+...++++..|+..+.......++.+...++..++.+
T Consensus 105 ~~~Ty~el~~~v~~lA~~L~~lG~-~~gd~Vai~~~n~~e--~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~ 181 (696)
T PLN02387 105 EWITYGQVFERVCNFASGLVALGH-NKEERVAIFADTRAE--WLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTT 181 (696)
T ss_pred EEEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCE
Confidence 458999998887776654 467 889998888876542 23447889999999997776666789999999999999
Q ss_pred EEechHHHHHHHHH
Q psy2835 260 FLAVPRVWEKIHEK 273 (305)
Q Consensus 260 ~~~~P~~~~~l~~~ 273 (305)
++..+..+..+.+.
T Consensus 182 li~~~~~~~~l~~~ 195 (696)
T PLN02387 182 VICDSKQLKKLIDI 195 (696)
T ss_pred EEECHHHHHHHHHH
Confidence 99988877776553
No 209
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=71.16 E-value=63 Score=27.37 Aligned_cols=71 Identities=11% Similarity=-0.071 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 35 AGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 35 ~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+..+.....+.|. .+|++| +....+..-..+.+++...|..+..+-|...++.....++..++++++++..
T Consensus 41 a~~~l~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~ 112 (298)
T TIGR01139 41 ALNMIWDAEKRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGA 112 (298)
T ss_pred HHHHHHHHHHcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcCCEEEEECCC
Confidence 4444455666664 677766 5566666777777788889988877777665566788899999999999875
No 210
>KOG1177|consensus
Probab=71.02 E-value=31 Score=31.40 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=63.7
Q ss_pred cceEechhHHHHHHHHHHH---hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCC
Q psy2835 181 KPVMLSHDNITFNAACIIQ---YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRP 257 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~v 257 (305)
-++.+|.+.+..-+.++.. .+++ ..+|++..+.|=+.-. +...+++...|..++...+....+++.=.+++.++
T Consensus 74 eg~R~Tf~~~~~ev~slAaGll~lGL-~kGDrVgvwgpN~~~w--~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~ 150 (596)
T KOG1177|consen 74 EGIRLTFSEFVSEVESLAAGLLSLGL-KKGDRVGVWGPNSYEW--VLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGC 150 (596)
T ss_pred ccchhhHHHHHHHHHHHHhhHHhhcC-CCCCEEEEecCChHHH--HHHHHHHHHhceEEeccCcccccHHHHHHHhhcCe
Confidence 5667899999887766544 3577 9999999999976533 33467888888888877644434677778899999
Q ss_pred cEEEechHHHH
Q psy2835 258 HVFLAVPRVWE 268 (305)
Q Consensus 258 t~~~~~P~~~~ 268 (305)
-.++..|.+-.
T Consensus 151 k~l~~p~~~k~ 161 (596)
T KOG1177|consen 151 KALFAPPQFKT 161 (596)
T ss_pred EEEEccchhhh
Confidence 99988876543
No 211
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=71.00 E-value=47 Score=28.17 Aligned_cols=71 Identities=13% Similarity=-0.030 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 35 AGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 35 ~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+..+...+.+.|. .+|+.| +....+..-..+.+++...|..+..+-|...+......++..++++++++..
T Consensus 42 a~~~~~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~ 113 (299)
T TIGR01136 42 ALSMIEDAEKRGLLKPGDTI-IEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAE 113 (299)
T ss_pred HHHHHHHHHHcCCCCCCCEE-EEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4444445556664 677765 4566667777778888889988887777666667778899999999999864
No 212
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=70.45 E-value=28 Score=30.73 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=30.8
Q ss_pred HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q psy2835 44 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
..++++||.|++-.+ .+.....++...|+.++.++.. .+.+++...++. +.++|+..
T Consensus 65 al~~~pGd~Viv~~~---t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~ 126 (376)
T TIGR02379 65 LLDIQPGDEVIMPSY---TFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH-RTKAIVPV 126 (376)
T ss_pred HcCCCCcCEEEECCC---CcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEe
Confidence 345677777665333 3334445555667666665532 345556655543 45555543
No 213
>PRK13382 acyl-CoA synthetase; Provisional
Probab=70.26 E-value=59 Score=30.07 Aligned_cols=97 Identities=4% Similarity=-0.026 Sum_probs=73.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++- . .-.+|+..+...+..+...+ ++ .++|++...++-+- ..+..+++.+..|+.++.
T Consensus 55 ~~p~~~a~~~--~-------~~~~Ty~el~~~~~~~A~~L~~~g~-~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~vp 122 (537)
T PRK13382 55 RCPDRPGLID--E-------LGTLTWRELDERSDALAAALQALPI-GEPRVVGIMCRNHR--GFVEALLAANRIGADILL 122 (537)
T ss_pred hCCCCeEEEe--C-------CCeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEecCcH--HHHHHHHHHHHcCcEEEe
Confidence 4567777762 1 11689999988777666643 56 78999988887654 345558999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+.......+...+++.++..+.........+
T Consensus 123 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 154 (537)
T PRK13382 123 LNTSFAGPALAEVVTREGVDTVIYDEEFSATV 154 (537)
T ss_pred cCcccCHHHHHHHHHhcCCCEEEEchhhHHHH
Confidence 88776668889999999999998876655444
No 214
>PRK06178 acyl-CoA synthetase; Validated
Probab=70.14 E-value=48 Score=30.85 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=72.3
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.+++... | ..+|+..+...+..+...+ ++ ..++++...+|-..- .+..+++++..|+..+..
T Consensus 46 ~p~~~al~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l 113 (567)
T PRK06178 46 RPQRPAIIFY--G-------HVITYAELDELSDRFAALLRQRGV-GAGDRVAVFLPNCPQ--FHIVFFGILKLGAVHVPV 113 (567)
T ss_pred CCCceEEEEC--C-------ceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCcH--HHHHHHHHHHhCeEEeec
Confidence 4566665431 2 2689999988777665543 56 788898888887763 234478999999998877
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....+..+...+++.++..+...+.....+.
T Consensus 114 ~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~ 145 (567)
T PRK06178 114 SPLFREHELSYELNDAGAEVLLALDQLAPVVE 145 (567)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEccchHHHHH
Confidence 76665788999999999999999888766554
No 215
>PLN02574 4-coumarate--CoA ligase-like
Probab=70.13 E-value=72 Score=29.72 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh----hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++- +.+| ..+|+..+...+..+... .++ .++|++...++-..- +...+++++..|+..+.
T Consensus 52 ~~~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~~G~-~~gd~V~i~~~n~~~--~~~~~la~~~~G~v~v~ 121 (560)
T PLN02574 52 HNGDTALID---SSTG----FSISYSELQPLVKSMAAGLYHVMGV-RQGDVVLLLLPNSVY--FPVIFLAVLSLGGIVTT 121 (560)
T ss_pred cCCCCEEEE---CCCC----CcccHHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCcch--HHHHHHHHHHhCeEEeC
Confidence 446666553 3233 257899888877665543 456 889999999886542 33447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....+.++...+++.++..++..+.....+
T Consensus 122 l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 153 (560)
T PLN02574 122 MNPSSSLGEIKKRVVDCSVGLAFTSPENVEKL 153 (560)
T ss_pred cCcccCHHHHHHHHHhcCCEEEEECHHHHHHH
Confidence 87766678889999999999998888766554
No 216
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=70.00 E-value=18 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.|...|+++||.|++-. ..+....-++...|+.++.+|-. .+++.+...+..-. ++|+..
T Consensus 56 al~~l~~~~gdeVi~p~---~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t-~ai~~~ 120 (363)
T PF01041_consen 56 ALRALGLGPGDEVIVPA---YTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKT-KAILVV 120 (363)
T ss_dssp HHHHTTGGTTSEEEEES---SS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTE-EEEEEE
T ss_pred HHHhcCCCcCceEecCC---CcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCc-cEEEEe
Confidence 34668999999888764 35566788899999999988644 57888888776444 666654
No 217
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=69.96 E-value=73 Score=29.41 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=68.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++..-... .....+|+..+...+..+...+ ++ ..++++...++-.. .. ...+++++..|+.++..
T Consensus 35 ~p~~~a~~~~~~~~---~~~~~~Ty~eL~~~~~~~a~~L~~~g~-~~g~~V~i~~~~~~-~~-~~~~la~~~~G~~~v~l 108 (538)
T TIGR03208 35 CPDKPALTAYRDGH---GAVRRFSYRELDCRVDRIAVGLARLGV-GRGDVVSFQLPNRW-EF-TALYLACARIGAVLNPL 108 (538)
T ss_pred CCCceEEEeecccC---CCcceecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCH-HH-HHHHHHHHhcCEEEecc
Confidence 56677766432111 1134689999988776665543 56 78899888887654 32 33478999999998887
Q ss_pred CCccchhHHHHHhhhcCCcEEEechH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
+....++.+...++..+++.+...+.
T Consensus 109 ~~~~~~~~l~~~l~~~~~~~li~~~~ 134 (538)
T TIGR03208 109 MPIFRERELSFMLNHADSKVFVVPSV 134 (538)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEccc
Confidence 76665788889999999998887654
No 218
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=69.47 E-value=33 Score=30.18 Aligned_cols=56 Identities=7% Similarity=0.019 Sum_probs=33.5
Q ss_pred HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEE
Q psy2835 44 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~ 103 (305)
..++++||.|++-.+. +.....++...|+.++.++.. .+.+++...++. ++++|+.
T Consensus 65 ~~~~~~Gd~Viv~~~t---~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~-~tk~i~~ 125 (375)
T PRK11706 65 LLDIQPGDEVIMPSYT---FVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP-KTRAIVP 125 (375)
T ss_pred HhCCCCCCEEEECCCC---cHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC-CCeEEEE
Confidence 3466778877664443 333445566677777666532 456777776654 5666654
No 219
>PRK05852 acyl-CoA synthetase; Validated
Probab=69.26 E-value=81 Score=29.10 Aligned_cols=91 Identities=9% Similarity=-0.066 Sum_probs=66.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. .+ ...+|++.+...+..+...+ ++ .++|++...+|-.-- .+..+++++..|+..+..
T Consensus 29 ~p~~~ai~~~-~~------~~~~Ty~~l~~~~~~~a~~L~~~gv-~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l 98 (534)
T PRK05852 29 LPEAPALVVT-AD------RIAISYRDLARLVDDLAGQLTRSGL-LPGDRVALRMGSNAE--FVVALLAASRADLVVVPL 98 (534)
T ss_pred CCCCcEEEec-CC------CCcccHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCcHH--HHHHHHHHHHcCcEEeec
Confidence 5677776532 11 23589999988776665543 56 788999888777652 334488999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEec
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
+....+..+...++..++..++..
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~ii~~ 122 (534)
T PRK05852 99 DPALPIAEQRVRSQAAGARVVLID 122 (534)
T ss_pred CCCCCcHHHHHHHHhCCCCEEEEc
Confidence 776666888899999999988743
No 220
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=69.02 E-value=37 Score=31.67 Aligned_cols=79 Identities=10% Similarity=-0.053 Sum_probs=63.6
Q ss_pred EechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|+..+...+..+...+ ++ .++|++...+|-.--+ +..+++++..|+..+..+....++.+...+++.+++.+
T Consensus 32 ~~Ty~el~~~~~~la~~L~~~Gv-~~gd~V~v~~~n~~~~--~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 108 (563)
T PLN02860 32 RRTGHEFVDGVLSLAAGLLRLGL-RNGDVVAIAALNSDLY--LEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVML 108 (563)
T ss_pred eeeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCHHH--HHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEE
Confidence 589999998877766654 67 8999999998876533 34478899999999988777667899999999999998
Q ss_pred EechH
Q psy2835 261 LAVPR 265 (305)
Q Consensus 261 ~~~P~ 265 (305)
...+.
T Consensus 109 ~~~~~ 113 (563)
T PLN02860 109 VTDET 113 (563)
T ss_pred EEecc
Confidence 88654
No 221
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=68.69 E-value=58 Score=28.54 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=51.5
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC---CCHHHHHHHHhhCCceEEEEeCh-------HHH
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT---NSPEACLHCLVTSDANICVVEDD-------KQL 109 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~---~~~~~~~~~l~~~~~~~v~~~~~-------~~~ 109 (305)
..+.+.-..+||.|++..|.=.+ --..+...|+.++-++.. ...+.+...+.+ ++++|+...+ ...
T Consensus 89 ~~l~~~~~~~gd~vl~~~Ptf~~---Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~~~ 164 (356)
T COG0079 89 ELLVRAFVEPGDTVLIPEPTFSM---YEIAAQLAGAEVVKVPLKEFRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLLPR 164 (356)
T ss_pred HHHHHHhhcCCCEEEEcCCChHH---HHHHHHhcCCeEEEecccccccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCCH
Confidence 33334445677888887764332 233444556555444432 455666666666 7787777543 245
Q ss_pred HHHHHHhccCCCccEEEEccCC
Q psy2835 110 EKILKVKAQCPKLKAIVQYEGK 131 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~ 131 (305)
+.+..+.+.++. ..++++|+.
T Consensus 165 ~~l~~l~~~~~~-~~~vVvDEA 185 (356)
T COG0079 165 EELRALLEALPE-GGLVVIDEA 185 (356)
T ss_pred HHHHHHHHhCCC-CcEEEEeCc
Confidence 677777777777 666667654
No 222
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=68.57 E-value=71 Score=27.04 Aligned_cols=71 Identities=11% Similarity=-0.062 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 34 YAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 34 ~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.+........+.|. .+|+.|+ ....+..-..+.++|...|..+..+-|...+......++..++++++++.
T Consensus 42 ~a~~~v~~a~~~g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~ 113 (290)
T TIGR01138 42 PALSMIVEAEKRGEIKPGDVLI-EATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTK 113 (290)
T ss_pred HHHHHHHHHHHcCCCCCCCEEE-EECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 34444445555664 6676554 46667777778888888998888777776667778889999999999975
No 223
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.01 E-value=23 Score=23.15 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=49.7
Q ss_pred CccchHHHHHHHHHHHHH---HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 23 PEWFYSDLGAIYAGGLAK---AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~---~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
...||+||.++ -+.++. .|....++..|-|+|+--++..+ ..++.++.-.+.+++...+++.+++
T Consensus 8 gi~t~keL~eE-~~~Fv~~kA~l~k~~L~dDde~aIfnI~gT~S-----------y~V~Fl~~~~s~eev~~ele~mga~ 75 (88)
T COG4009 8 GIATYKELDEE-LKDFVRLKAHLAKVDLNDDDELAIFNIEGTSS-----------YYVVFLEEVESEEEVERELEDMGAE 75 (88)
T ss_pred hheeHHhhhHH-HHHHHHHHHHhcccccCCCCcEEEEEecCcee-----------EEEEEEeccCCHHHHHHHHHHhCch
Confidence 36789988875 555543 44556678888999997777653 3577789899999999999988876
Q ss_pred E
Q psy2835 100 I 100 (305)
Q Consensus 100 ~ 100 (305)
.
T Consensus 76 i 76 (88)
T COG4009 76 I 76 (88)
T ss_pred h
Confidence 4
No 224
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=67.42 E-value=49 Score=30.62 Aligned_cols=100 Identities=11% Similarity=0.002 Sum_probs=71.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.-..|+ ...+|+..+...+..+...+ ++ ..+|++...+|-..-+ +..+++.+..|+..+..
T Consensus 23 ~~~~~~~~~~~~~~-----~~~~Ty~el~~~v~~la~~L~~~g~-~~gd~v~i~~~~~~~~--~~~~la~~~~G~~~v~l 94 (542)
T PRK06018 23 HGNREVVTRSVEGP-----IVRTTYAQIHDRALKVSQALDRDGI-KLGDRVATIAWNTWRH--LEAWYGIMGIGAICHTV 94 (542)
T ss_pred CCCceEEEeeccCC-----ceEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchHH--HHHHHHHHhcCeEeecc
Confidence 45666664211121 34689999988777766653 67 8889988887776533 33478889999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....++.+...+++.++..+.........+
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~ 125 (542)
T PRK06018 95 NPRLFPEQIAWIINHAEDRVVITDLTFVPIL 125 (542)
T ss_pred ccccCHHHHHHHHhccCCCEEEEccccHHHH
Confidence 7776678899999999999998876555444
No 225
>PLN00011 cysteine synthase
Probab=66.57 E-value=68 Score=27.63 Aligned_cols=72 Identities=8% Similarity=-0.104 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcC-CCCC-CeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 34 YAGGLAKAFLKLG-LERY-HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 34 ~~~~la~~L~~~g-~~~g-d~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+..+.....+.| +.+| +.|+ ....+..-..+.+++...|..+..+=|...++.....++..++++++++..
T Consensus 51 ~a~~~l~~a~~~g~~~~g~~~vv-~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~ 124 (323)
T PLN00011 51 IAYSMIKDAEDKGLITPGKSTLI-EATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQS 124 (323)
T ss_pred HHHHHHHHHHHcCCCCCCCcEEE-EeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444444555565 6777 5544 467777788888889999988877777666678888999999999999854
No 226
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=66.40 E-value=65 Score=29.81 Aligned_cols=85 Identities=8% Similarity=-0.072 Sum_probs=64.6
Q ss_pred eEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcE
Q psy2835 183 VMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHV 259 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~ 259 (305)
-.+|+..+...+..+... .++ ..+|++...+|-..-. +..+++++..|+..+..+....++.+...+++.++..
T Consensus 38 ~~~Ty~el~~~~~~~a~~L~~~g~-~~~d~v~i~~~~~~~~--~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (539)
T PRK07008 38 HRYTYRDCERRAKQLAQALAALGV-EPGDRVGTLAWNGYRH--LEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRY 114 (539)
T ss_pred eEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHH--HHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcE
Confidence 358999998877766554 466 7889999988766422 3337888999999998877666788889999999999
Q ss_pred EEechHHHHHH
Q psy2835 260 FLAVPRVWEKI 270 (305)
Q Consensus 260 ~~~~P~~~~~l 270 (305)
+...+.....+
T Consensus 115 ~~~~~~~~~~~ 125 (539)
T PRK07008 115 VLFDLTFLPLV 125 (539)
T ss_pred EEEcchhHHHH
Confidence 88887665443
No 227
>PRK05850 acyl-CoA synthetase; Validated
Probab=66.37 E-value=1.1e+02 Score=28.45 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=73.0
Q ss_pred cCCCceeEEEecc-CC-CCCCcceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTS-GT-EGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TS-Gt-TG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.... +. .|. ...+|+..+...+..+...+.-. .++|++...++-+. .++..+++++..|+.++.
T Consensus 13 ~~p~~~a~~~~~~~~~~~~~--~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~--~~~~~~lA~~~~G~v~vp 88 (578)
T PRK05850 13 LQPDDAAFTFIDYEQDPAGV--AETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGL--EYIVAFLGALQAGLIAVP 88 (578)
T ss_pred cCCCceEEEEEccCCCCCCc--eeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcc--cHHHHHHHHHHcCceEEe
Confidence 3567777654321 11 121 35799999988877766654311 45788888888664 334448899999999998
Q ss_pred eCCc---cchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+.. ..++.+...++..++..+...+.....+.
T Consensus 89 l~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~ 124 (578)
T PRK05850 89 LSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVT 124 (578)
T ss_pred cCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence 8642 22478888999999999999888776654
No 228
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=66.09 E-value=21 Score=26.38 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecC---ChhHHHHHHHHHHcCCe
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFN---APEWFYSDLGAIYAGGF 76 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n---~~~~~~~~~a~~~~G~~ 76 (305)
+.+.+.|.+.|+.+++.|++.+.. +.....++|.+-..|..
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~ 124 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHP 124 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCC
Confidence 368888899999999999999875 55666777778888865
No 229
>PRK07638 acyl-CoA synthetase; Validated
Probab=65.68 E-value=1.1e+02 Score=27.85 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCh-hHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP-EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~-~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.+|.+.+.. .+... ....+++++|++....+-.. .++...+..+..|+..+.. +..+++++...+++.+++++.
T Consensus 162 ~~s~~~~~~-~~~~~---~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 236 (487)
T PRK07638 162 LRAQQSWLH-SFDCN---VHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLM-RKFIPNQVLDKLETENISVMY 236 (487)
T ss_pred EEecHHHHH-HHHHH---HHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEc-CCCCHHHHHHHHHHcCCeEEE
Confidence 377777666 34433 34457888998877655432 2345666777889888855 567889999999999999999
Q ss_pred EeChHHHHHHHH
Q psy2835 103 VEDDKQLEKILK 114 (305)
Q Consensus 103 ~~~~~~~~~~~~ 114 (305)
..... ...+..
T Consensus 237 ~~P~~-~~~l~~ 247 (487)
T PRK07638 237 TVPTM-LESLYK 247 (487)
T ss_pred eCcHH-HHHHHh
Confidence 98774 344443
No 230
>PRK07867 acyl-CoA synthetase; Validated
Probab=65.52 E-value=77 Score=29.31 Aligned_cols=85 Identities=8% Similarity=-0.059 Sum_probs=65.1
Q ss_pred eEechhHHHHHHHHHHHhhc----cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCc
Q psy2835 183 VMLSHDNITFNAACIIQYFK----LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPH 258 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~~~----~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt 258 (305)
..+|+..+...+..+...+. . .+++++...+|-.- ..+..+++++..|+.++.++....++.+...+++.++.
T Consensus 27 ~~~Ty~el~~~v~~lA~~L~~~~~~-~~~~~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 103 (529)
T PRK07867 27 SFTSWREHIRGSAARAAALRARLDP-TRPPHVGVLLDNTP--EFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQ 103 (529)
T ss_pred cEEeHHHHHHHHHHHHHHHHHhhCC-CCCCEEEEECCCCH--HHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCe
Confidence 35899999988877666543 4 56677777776543 33444889999999999887776678999999999999
Q ss_pred EEEechHHHHHH
Q psy2835 259 VFLAVPRVWEKI 270 (305)
Q Consensus 259 ~~~~~P~~~~~l 270 (305)
.+.........+
T Consensus 104 ~li~~~~~~~~~ 115 (529)
T PRK07867 104 LVLTESAHAELL 115 (529)
T ss_pred EEEECHhHHHHH
Confidence 999988766543
No 231
>PRK06188 acyl-CoA synthetase; Validated
Probab=65.32 E-value=54 Score=30.10 Aligned_cols=79 Identities=8% Similarity=-0.067 Sum_probs=59.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.+|++.+... +. ......++..+|++....+-+..+...+++.+..|+..+..+ ...++.+...+++.++.+++.
T Consensus 187 ~~s~~~l~~~-~~---~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~ 261 (524)
T PRK06188 187 MGTHRSIATM-AQ---IQLAEWEWPADPRFLMCTPLSHAGGAFFLPTLLRGGTVIVLA-KFDPAEVLRAIEEQRITATFL 261 (524)
T ss_pred eeehHHHHHH-HH---HHHhhcCCCcCcEEEEecCchhhhhHHHHHHHHcCCEEEEcC-CCCHHHHHHHHHHhCCEEEEe
Confidence 3777777763 44 333456788899988887776666666778888898888776 467889999999999999988
Q ss_pred eChH
Q psy2835 104 EDDK 107 (305)
Q Consensus 104 ~~~~ 107 (305)
....
T Consensus 262 ~P~~ 265 (524)
T PRK06188 262 VPTM 265 (524)
T ss_pred hHHH
Confidence 7653
No 232
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=65.23 E-value=89 Score=27.99 Aligned_cols=66 Identities=8% Similarity=-0.080 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec--CCCCCHHHHHHHHhhCCceEEEE
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM--YTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i--~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+...+.+..--+|-+|+.+.+=.++..+.+..+...|+-+... ||....++....|...+..++--
T Consensus 20 ~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~ 87 (406)
T TIGR00936 20 IRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAW 87 (406)
T ss_pred HHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEe
Confidence 3444444444568899999999999999999999999987766 78778888999998888886543
No 233
>PRK06060 acyl-CoA synthetase; Validated
Probab=64.49 E-value=66 Score=31.03 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. + . .+|++.+...+..+... .++ .+++++...++-+.-+ +..+++++..|+..+..
T Consensus 19 ~pd~~a~~~---~-----~--~~Ty~eL~~~~~~lA~~L~~~g~-~~g~~V~i~~~~~~~~--~~~~la~~~aG~~~vpi 85 (705)
T PRK06060 19 WYDRPAFYA---A-----D--VVTHGQIHDGAARLGEVLRNRGL-SSGDRVLLCLPDSPDL--VQLLLACLARGVMAFLA 85 (705)
T ss_pred CCCceEEEe---c-----C--ceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHHH--HHHHHHHHHhCcEEEec
Confidence 467777652 2 1 48999998877766554 367 8899999998887633 34488999999988888
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWE 268 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~ 268 (305)
+....+..+...+++.++..+........
T Consensus 86 ~p~~~~~~l~~~l~~~~~~~vi~~~~~~~ 114 (705)
T PRK06060 86 NPELHRDDHALAARNTEPALVVTSDALRD 114 (705)
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEchHHhh
Confidence 76665678888888889998887655443
No 234
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=64.47 E-value=80 Score=32.39 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=75.2
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc--cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
...++.++++.. . | -.+|++.+...+......+. . .++|++...+|-+.-+ ...+++++..|+..+.
T Consensus 626 ~~~p~~~a~~~~-~---~----~~~Ty~el~~~~~~~a~~L~~~~-~~g~~V~i~~~n~~~~--~~~~la~~~~G~v~v~ 694 (1146)
T PRK08633 626 KRNWSRLAVADS-T---G----GELSYGKALTGALALARLLKREL-KDEENVGILLPPSVAG--ALANLALLLAGKVPVN 694 (1146)
T ss_pred HhcCCCcEEEcC-C---C----CcCcHHHHHHHHHHHHHHHHHhC-CCCCeEEEECCCchHH--HHHHHHHHHcCCEEEE
Confidence 346788887532 1 1 26899999887766665542 4 6889999888887633 3447899999999888
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+....++++...+++.+++.+...+.....+.
T Consensus 695 l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 727 (1146)
T PRK08633 695 LNYTASEAALKSAIEQAQIKTVITSRKFLEKLK 727 (1146)
T ss_pred eCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHh
Confidence 877766789999999999999998887776653
No 235
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=64.18 E-value=35 Score=30.81 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=18.1
Q ss_pred HHHHHHHcCCeEEecCCCCC--HHHHHHHHhhCCceEEEEeC
Q psy2835 66 SDLGAIYAGGFAAGMYTTNS--PEACLHCLVTSDANICVVED 105 (305)
Q Consensus 66 ~~~a~~~~G~~~v~i~~~~~--~~~~~~~l~~~~~~~v~~~~ 105 (305)
++++++..|-.++.-++.+. ..-+...+...++++.+++.
T Consensus 92 al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 92 AVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 33344455554444444432 22223334555666555553
No 236
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=63.81 E-value=56 Score=30.37 Aligned_cols=95 Identities=7% Similarity=0.094 Sum_probs=70.2
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++. . +-.+|+..+...+..+...+ ++ ..++++....+-.. .+...+++++..|+..+.
T Consensus 36 ~p~~~a~~~--~-------~~~lTy~~l~~~~~~la~~L~~~~g~-~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~ 103 (560)
T PRK08974 36 YADQPAFIN--M-------GEVMTFRKLEERSRAFAAYLQNGLGL-KKGDRVALMMPNLL--QYPIALFGILRAGMIVVN 103 (560)
T ss_pred CCCCceEEE--C-------CccccHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEECCCCH--HHHHHHHHHHHcCcEEec
Confidence 456677653 1 23679999988777666654 55 78898888877654 334558899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEK 269 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~ 269 (305)
.+....++.+.+.+++.+++.+...+.....
T Consensus 104 l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~ 134 (560)
T PRK08974 104 VNPLYTPRELEHQLNDSGAKAIVIVSNFAHT 134 (560)
T ss_pred cCccCCHHHHHHHHHhcCceEEEEeccccHH
Confidence 8776667889999999999999877654443
No 237
>KOG0023|consensus
Probab=63.10 E-value=78 Score=27.27 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=55.5
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCC
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP 120 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 120 (305)
-|++.|+.||.+|+|..--..-.+...+|-+. |.-+..|+.+.+ .-++.++..+++..+...+. -+....+.....
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~--kkeea~~~LGAd~fv~~~~d-~d~~~~~~~~~d 248 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSK--KKEEAIKSLGADVFVDSTED-PDIMKAIMKTTD 248 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCch--hHHHHHHhcCcceeEEecCC-HHHHHHHHHhhc
Confidence 35678999999999999988888888888765 666777776652 23456888999998887642 245555544444
Q ss_pred Cc
Q psy2835 121 KL 122 (305)
Q Consensus 121 ~~ 122 (305)
..
T Consensus 249 g~ 250 (360)
T KOG0023|consen 249 GG 250 (360)
T ss_pred Cc
Confidence 33
No 238
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=63.02 E-value=75 Score=29.38 Aligned_cols=96 Identities=5% Similarity=-0.057 Sum_probs=69.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.- +-.+|+..+...+..+...+ ++ .+++++...++-.-- .+..+++.+..|+..+..
T Consensus 30 ~~~~~a~~~~---------~~~~ty~~l~~~~~~~a~~L~~~g~-~~g~~V~i~~~~~~~--~~~~~~a~~~~G~~~vpl 97 (542)
T PRK07786 30 QPDAPALRFL---------GNTTTWRELDDRVAALAGALSRRGV-GFGDRVLILMLNRTE--FVESVLAANMLGAIAVPV 97 (542)
T ss_pred CCCCeEEEeC---------CCcccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCeEEEEc
Confidence 4566666421 12689999988776655543 56 788888887775542 344588999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.....+..+...+++.++..+...+.....+
T Consensus 98 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~ 128 (542)
T PRK07786 98 NFRLTPPEIAFLVSDCGAHVVVTEAALAPVA 128 (542)
T ss_pred CccCCHHHHHHHHHhCCCcEEEEccchHHHH
Confidence 7666568888999999999988877655443
No 239
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=62.59 E-value=34 Score=29.66 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=46.8
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
|++.+++||++|+|..--..-.....+|-..- +.++.++.+ ++-.+..++.+++.++...
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~---~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRS---EEKLELAKKLGADHVINSS 218 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCC---hHHHHHHHHhCCcEEEEcC
Confidence 45568999999999988888888888877554 888888766 4445567788999988865
No 240
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=62.34 E-value=1.5e+02 Score=28.45 Aligned_cols=103 Identities=6% Similarity=-0.117 Sum_probs=73.1
Q ss_pred CCCceeEEEe--ccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 163 ATNECCTLVY--TSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 163 ~~~~~~~i~~--TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
.++.+++... ..|..|. -..+|++.+...+..+...+ ++ .++|++...++-..-. +...++++..|+..+
T Consensus 55 ~p~~~al~~~~~~~~~~~~--~~~~Ty~el~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~ew--~~~~lA~~~~G~v~v 129 (660)
T PLN02430 55 YPDNKMLGWRRIVDGKVGP--YMWKTYKEVYEEVLQIGSALRASGA-EPGSRVGIYGSNCPQW--IVAMEACAAHSLICV 129 (660)
T ss_pred CCCCceEEEEecCCCCCCC--cEEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHHcCCeEE
Confidence 4567776432 1233332 23469999988877766654 67 8899988888776532 344789999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.......++.+...++..++++++.....+..+
T Consensus 130 pl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~ 162 (660)
T PLN02430 130 PLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKEL 162 (660)
T ss_pred EeccCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 887766678999999999999999876644433
No 241
>PLN02356 phosphateglycerate kinase
Probab=62.18 E-value=86 Score=28.26 Aligned_cols=70 Identities=14% Similarity=-0.081 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCC-CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 34 YAGGLAKAFLKLGLE-RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 34 ~~~~la~~L~~~g~~-~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.+..+...+.+.|.. +|.+| +....+..-..+.++|...|..+..+=|.....+....++..+++++.++
T Consensus 87 ~A~~~i~~a~~~g~~~~~g~V-veaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~ 157 (423)
T PLN02356 87 VAVKIIEEALESGQLFPGGVV-TEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVR 157 (423)
T ss_pred HHHHHHHHHHhCCccCCCCEE-EEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEEC
Confidence 444455555565543 66544 44555666778888888899888777777666777889999999999985
No 242
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=62.14 E-value=67 Score=28.52 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=49.8
Q ss_pred hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 200 YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 200 ~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
..++ ..+|++...+|-.-. .+..+++.+..|+..+..+....++.+...+++.++..+...+.
T Consensus 18 ~~g~-~~gd~v~i~~~~~~~--~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 18 AQGI-RSGSRVALVGQNSIE--MVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred HhCC-CCCCEEEEEcCCCHH--HHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 3467 889999999888753 34448899999999998887766688888999999998876654
No 243
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=61.48 E-value=69 Score=29.14 Aligned_cols=81 Identities=7% Similarity=0.098 Sum_probs=61.7
Q ss_pred eEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcE
Q psy2835 183 VMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHV 259 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~ 259 (305)
-.+|++.+...+..+...+ ++ .+++++...++-+.-+ +..+++++..|+.++..+.....+.+...+++.++..
T Consensus 24 ~~~ty~el~~~~~~~a~~L~~~g~-~~~~~V~i~~~~~~~~--~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ 100 (502)
T TIGR01734 24 QELTYQQLKEQSDRLAAFIQKRIL-PKKSPIIVYGHMEPHM--LVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPEL 100 (502)
T ss_pred cEEeHHHHHHHHHHHHHHHHHhCC-CCCCeEEEEeCCCHHH--HHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCE
Confidence 3699999988777766554 46 7788888877776533 3447899999998888877665678889999999999
Q ss_pred EEechHH
Q psy2835 260 FLAVPRV 266 (305)
Q Consensus 260 ~~~~P~~ 266 (305)
+...+..
T Consensus 101 ii~~~~~ 107 (502)
T TIGR01734 101 VIHTAEL 107 (502)
T ss_pred EEecccc
Confidence 8876543
No 244
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=61.13 E-value=1.5e+02 Score=28.77 Aligned_cols=89 Identities=9% Similarity=0.007 Sum_probs=68.5
Q ss_pred cceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCC
Q psy2835 181 KPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRP 257 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~v 257 (305)
....+|++.+...+..+...+ ++ .++|++...++-.. ..+...++++..|+..+-......++.+...++..++
T Consensus 118 ~~~~lTy~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~ 194 (700)
T PTZ00216 118 ETRYITYAELWERIVNFGRGLAELGL-TKGSNVAIYEETRW--EWLASIYGIWSQSMVAATVYANLGEDALAYALRETEC 194 (700)
T ss_pred CceEeEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCH--HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCc
Confidence 457899999999887766654 67 88999888887654 3344578899999988877655556888889999999
Q ss_pred cEEEechHHHHHHHH
Q psy2835 258 HVFLAVPRVWEKIHE 272 (305)
Q Consensus 258 t~~~~~P~~~~~l~~ 272 (305)
..++.....+..+.+
T Consensus 195 ~~lv~~~~~~~~l~~ 209 (700)
T PTZ00216 195 KAIVCNGKNVPNLLR 209 (700)
T ss_pred cEEEECHHHHHHHHH
Confidence 999988776665544
No 245
>PLN03051 acyl-activating enzyme; Provisional
Probab=60.59 E-value=1.1e+02 Score=28.08 Aligned_cols=80 Identities=9% Similarity=-0.082 Sum_probs=55.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.+|++.+.. .+... ....++.++|++....+-... ....+++++..|+..+..+.....+.+...+++.++.++.
T Consensus 138 ~~sh~~~~~-~~~~~---~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~ 213 (499)
T PLN03051 138 PWTHLSPLR-CASDG---WAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLG 213 (499)
T ss_pred EEccchHHH-HHHHH---HHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEE
Confidence 378777665 23322 234578888987665553321 2235677888999988777556678899999999999999
Q ss_pred EeChH
Q psy2835 103 VEDDK 107 (305)
Q Consensus 103 ~~~~~ 107 (305)
.....
T Consensus 214 ~vP~~ 218 (499)
T PLN03051 214 LVPSI 218 (499)
T ss_pred eCHHH
Confidence 87764
No 246
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=60.31 E-value=1e+02 Score=30.16 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=74.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh------ccCCCC-----------ceEEEeCchhHHHHHHH
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF------KLESAA-----------LSVISFLPLSHIAAQTV 224 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~------~~~~~~-----------~~~l~~~pl~~~~g~~~ 224 (305)
..++.++++.... |.+ -..+|++.+...+..+...+ ++ .++ |++...++=+. - .+.
T Consensus 73 ~~p~~~Al~~~~~---g~~-~~~~Ty~el~~~v~~~A~~L~~~~~~Gv-~~g~~~~~~~~g~~d~V~i~~~N~~-e-w~~ 145 (746)
T PTZ00342 73 LNNNKIAIVEHSC---GEP-QNYITYGNFFKKVLSFSHSLNTYEGKGI-PEKKYNEEQNNGKFKLLGLYGSNSI-N-WLV 145 (746)
T ss_pred hcCCceeEeccCC---CCC-ceeeeHHHHHHHHHHHHHHHHHHhhcCC-CcCccccccccccccEEEEEcCCCH-H-HHH
Confidence 3567777753222 211 24689999888777655543 56 665 77877776553 2 234
Q ss_pred HHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 225 DIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
..++++..|+..+.......++.+...++..++.+++..+..+..+.+.
T Consensus 146 ~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~ 194 (746)
T PTZ00342 146 ADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLER 194 (746)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHh
Confidence 4789999999999887766679999999999999999988888777653
No 247
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=59.76 E-value=67 Score=29.89 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. . +-.+|+..+...+..+...+ ++ ..+|++...++-..-+ +..+++++..|+..+..
T Consensus 37 ~p~~~a~~~-~--------~~~~ty~eL~~~~~~la~~L~~~gv-~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpi 104 (563)
T PRK06710 37 YPEKKALHF-L--------GKDITFSVFHDKVKRFANYLQKLGV-EKGDRVAIMLPNCPQA--VIGYYGTLLAGGIVVQT 104 (563)
T ss_pred CCCceEEEe-c--------CeeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCChHH--HHHHHHHHHcCeEEecc
Confidence 456666554 1 23589999988877766654 56 7889999888876533 34478999999988887
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWE 268 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~ 268 (305)
++......+...++..+++.+...+....
T Consensus 105 ~p~~~~~~l~~~l~~~~~~~ii~~~~~~~ 133 (563)
T PRK06710 105 NPLYTERELEYQLHDSGAKVILCLDLVFP 133 (563)
T ss_pred CcccCHHHHHHHHhccCCeEEEEeccchh
Confidence 76665688889999999999988765433
No 248
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=59.39 E-value=65 Score=28.48 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=50.0
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhhCCceEEEEeC----hHHHHHH
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVTSDANICVVED----DKQLEKI 112 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~~~~~~v~~~~----~~~~~~~ 112 (305)
|+.+++++||-|.+ .+.-|+...=++...|+.+|.+|- +.+++.++..+..- .++|+.-. ....+.+
T Consensus 66 L~al~ig~GDeVI~---ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~-tKAIipVhl~G~~~dm~~i 141 (374)
T COG0399 66 LLALAIGPGDEVIV---PSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR-TKAIIPVHLAGQPCDMDAI 141 (374)
T ss_pred HHhcCCCCCCEEEe---cCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC-CeEEEEehhccCCCCHHHH
Confidence 35668999995543 355788899999999999998864 35888888888775 66666532 1134555
Q ss_pred HHHhc
Q psy2835 113 LKVKA 117 (305)
Q Consensus 113 ~~~~~ 117 (305)
.++.+
T Consensus 142 ~~la~ 146 (374)
T COG0399 142 MALAK 146 (374)
T ss_pred HHHHH
Confidence 55543
No 249
>PRK10717 cysteine synthase A; Provisional
Probab=59.31 E-value=83 Score=27.15 Aligned_cols=70 Identities=16% Similarity=0.010 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 35 AGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 35 ~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+..+.....+.|. .+|+.| +....+..-..+.++|...|..+..+-|...++.....++..++++++++.
T Consensus 48 a~~~v~~a~~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~ 118 (330)
T PRK10717 48 ALNIIWDAEKRGLLKPGGTI-VEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPA 118 (330)
T ss_pred HHHHHHHHHHcCCCCCCCEE-EEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 4444445555664 666654 346667777778888888998877777766667788999999999999985
No 250
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=59.27 E-value=39 Score=29.03 Aligned_cols=66 Identities=14% Similarity=0.016 Sum_probs=48.5
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
....+.|..+++.|... ..+..-..+.++|...|..+..+-|.....+....++..++++++++..
T Consensus 41 ~~a~~~g~~~~~~vv~a-SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~GA~v~~~~~~ 106 (316)
T cd06448 41 QKSAKQGLNECVHVVCS-SGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKV 106 (316)
T ss_pred HHHHHhhcccCCeEEEe-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCc
Confidence 34444454445555444 4566777778888899998888877777788889999999999999765
No 251
>PRK05939 hypothetical protein; Provisional
Probab=59.23 E-value=70 Score=28.50 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=12.4
Q ss_pred HcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 72 YAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 72 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
..|+.+..++.. ..+++...++ -+.++|++
T Consensus 108 ~~G~~v~~v~~~-d~e~l~~~l~-~~tklV~v 137 (397)
T PRK05939 108 GLGVEVTMVDAT-DVQNVAAAIR-PNTRMVFV 137 (397)
T ss_pred hcCCEEEEECCC-CHHHHHHhCC-CCCeEEEE
Confidence 345444444432 3344444442 23444444
No 252
>PRK12582 acyl-CoA synthetase; Provisional
Probab=59.10 E-value=68 Score=30.41 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=66.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++....+ .| ..-.+|++.+...+..+...+ ++ .++|++...++-.. ..+..+++++..|+..+..
T Consensus 62 ~pd~~a~~~~~~~-~~--~~~~~Ty~el~~~v~~lA~~L~~~Gv-~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vpl 135 (624)
T PRK12582 62 APDRPWLAQREPG-HG--QWRKVTYGEAKRAVDALAQALLDLGL-DPGRPVMILSGNSI--EHALMTLAAMQAGVPAAPV 135 (624)
T ss_pred CCCchheecccCC-CC--ceEEeEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEecCCCH--HHHHHHHHHHHcCCeEeec
Confidence 4566665532211 22 234789999998887766654 67 88999999888554 3344478999999999887
Q ss_pred CCccc-----hhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNAL-----KGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~-----~~~~~~~i~~~~vt~~~~~P 264 (305)
+.... .+.+...++..++..++...
T Consensus 136 ~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~ 165 (624)
T PRK12582 136 SPAYSLMSHDHAKLKHLFDLVKPRVVFAQS 165 (624)
T ss_pred cCccccccCCHHHHHHHHHhcCCcEEEecC
Confidence 65442 26788888999998887753
No 253
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=58.72 E-value=56 Score=28.82 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=31.4
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEE
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICV 102 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~ 102 (305)
...++++||.|++..+ .+.....++...|+.++.++.. .+.+++...+.. +.++|+
T Consensus 66 ~al~~~~Gd~Viv~~~---~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-~tkav~ 126 (379)
T PRK11658 66 MALGIGPGDEVITPSL---TWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP-RTKAII 126 (379)
T ss_pred HHcCCCCCCEEEECCC---cHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc-CCeEEE
Confidence 4456677887665433 2333344555667777665432 356667666643 455555
No 254
>PRK07787 acyl-CoA synthetase; Validated
Probab=58.47 E-value=78 Score=28.64 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=66.6
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++.++++. . + -.+|++.+...+..+...+ ...|++....|-.- ..+..+++++..|+..+..+.
T Consensus 12 ~~~~~~a~~~-~----~----~~~Ty~el~~~~~~~a~~L---~~~~~V~l~~~~~~--~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 12 AADIADAVRI-G----G----RVLSRSDLAGAATAVAERV---AGARRVAVLATPTL--ATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred ccCCceEEEe-C----C----cEEEHHHHHHHHHHHHHHh---ccCCEEEEECCCCH--HHHHHHHHHHhcCcEEeecCC
Confidence 3556776543 1 1 2589999999888877765 45678777766653 344558999999999998887
Q ss_pred ccchhHHHHHhhhcCCcEEEech
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
...++.+...+++.+++.+...+
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~ 100 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPA 100 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecC
Confidence 77678888999999999888765
No 255
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=57.93 E-value=78 Score=27.81 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=36.2
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhh---CCceEEEE
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVT---SDANICVV 103 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~---~~~~~v~~ 103 (305)
.+...++++||.|++-.+. +....-++...|+.++.++. ..+.+++...++. -++++|+.
T Consensus 60 ~l~al~~~~Gd~Viv~~~~---~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~ 127 (380)
T TIGR03588 60 ACLALGVGPGDRVWTTPIT---FVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVP 127 (380)
T ss_pred HHHHcCCCCCCEEEeCCcc---hHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEE
Confidence 3344567788886665543 33344556677877766543 2467777777763 35566664
No 256
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=57.92 E-value=1e+02 Score=27.89 Aligned_cols=71 Identities=13% Similarity=-0.049 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 34 YAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 34 ~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.+..+.....+.|. .+|+.| +....+..-..+.++|...|..+..+=|...+++....++..++++++++.
T Consensus 45 ~a~~~l~~a~~~g~~~~g~~v-v~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 116 (454)
T TIGR01137 45 IALRMIEDAEASGRLKPGDTI-IEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPT 116 (454)
T ss_pred HHHHHHHHHHHcCCCCCCCEE-EEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCC
Confidence 34444555556665 677664 445667777888888999998888777766667778889999999999975
No 257
>PRK06381 threonine synthase; Validated
Probab=57.75 E-value=40 Score=28.90 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+........+.|. ++| +....+..-..+.++|...|..+..+=|...+......++..++++++++..
T Consensus 51 a~~~l~~a~~~g~---~~l-v~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 51 AEAHVRRAMRLGY---SGI-TVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHHHHHHHcCC---CEE-EEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC
Confidence 4444445556653 344 4466677788888888899988777666655567778899999999999875
No 258
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=57.71 E-value=7.1 Score=36.61 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=25.4
Q ss_pred CCCceeEEEeccCCCC-CCcceEechhHHHH
Q psy2835 163 ATNECCTLVYTSGTEG-ASKPVMLSHDNITF 192 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG-~pK~v~~s~~~l~~ 192 (305)
.++.+.+...|||||| ++|.+.+|.+.+-.
T Consensus 99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 99 CSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred CCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 3566678889999997 69999999997776
No 259
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=56.96 E-value=69 Score=29.22 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=58.8
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhccc
Q psy2835 205 SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQT 281 (305)
Q Consensus 205 ~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~ 281 (305)
.++|++++--|-|+..- -..-..|..++-++... +++.+.+.+++++|..++.+|++=. |..... .
T Consensus 177 ~pGd~v~vE~PtY~~~~-----~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qN-----PtG~tm-s 245 (459)
T COG1167 177 DPGDTVLVEDPTYPGAL-----QALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQN-----PTGVTM-S 245 (459)
T ss_pred CCCCEEEEcCCCcHHHH-----HHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCC-----CCCCcc-C
Confidence 78999999999998432 22334588888776433 3788999999999999999998432 111111 1
Q ss_pred ChHHHHHHHHHHHhhhHHHh
Q psy2835 282 TGVKRWIANYAKSTSLQHYM 301 (305)
Q Consensus 282 ~sl~~~~~~~a~~~g~~~~~ 301 (305)
..=|.-+..||+++++.+.|
T Consensus 246 ~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 246 LERRKALLALAEKYDVLIIE 265 (459)
T ss_pred HHHHHHHHHHHHHcCCeEEe
Confidence 22356777888888876654
No 260
>PRK08308 acyl-CoA synthetase; Validated
Probab=56.85 E-value=1.4e+02 Score=26.39 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=63.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCh--hHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|++.+... +..+. ...++..+|++...++-.- .+...++..+..|+..+..+ ..+++.+...+++.++..+
T Consensus 120 ~~s~~~l~~~-~~~~~---~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~ 194 (414)
T PRK08308 120 RRSWTEIDRE-IEAYN---EALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-NKNPKFALNILRNTPQHIL 194 (414)
T ss_pred EEehHhHHHH-HHHHH---HhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-CCCHHHHHHHHHHhCCeEE
Confidence 4788888773 55444 3346677888777666543 33455778888999888765 4567888899999999988
Q ss_pred EEeChHHHHHHHHHhccCCCccEEE
Q psy2835 102 VVEDDKQLEKILKVKAQCPKLKAIV 126 (305)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~i 126 (305)
+..+.. +..+.........++.++
T Consensus 195 ~~~P~~-~~~l~~~~~~~~~l~~~~ 218 (414)
T PRK08308 195 YAVPLM-LHILGRLLPGTFQFHAVM 218 (414)
T ss_pred EcCHHH-HHHHHhcCCccccccEEE
Confidence 877653 344443322223444444
No 261
>PRK09192 acyl-CoA synthetase; Validated
Probab=56.71 E-value=1.5e+02 Score=27.74 Aligned_cols=87 Identities=8% Similarity=-0.022 Sum_probs=64.2
Q ss_pred ceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc-------chhHHHHH
Q psy2835 182 PVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA-------LKGSLINT 251 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~-------~~~~~~~~ 251 (305)
.-.+|+..+...+..+... .++ .++|++...++-+-- .+..+++++..|+..+..+... .++.+...
T Consensus 47 ~~~~Ty~eL~~~~~~~a~~L~~~gi-~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~ 123 (579)
T PRK09192 47 EEALPYQTLRARAEAGARRLLALGL-KPGDRVALIAETDGD--FVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGM 123 (579)
T ss_pred EEEecHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCchh--HHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHH
Confidence 3578999998776665554 467 889999999888653 3444789999999988875321 13678899
Q ss_pred hhhcCCcEEEechHHHHHHH
Q psy2835 252 LLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 252 i~~~~vt~~~~~P~~~~~l~ 271 (305)
+++.++..+.........+.
T Consensus 124 i~~~~~~~il~~~~~~~~~~ 143 (579)
T PRK09192 124 LASAQPAAIITPDELLPWVN 143 (579)
T ss_pred HHhcCCCEEEeChHHHHHHH
Confidence 99999999988876655443
No 262
>PRK07050 cystathionine beta-lyase; Provisional
Probab=56.64 E-value=82 Score=28.04 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=23.2
Q ss_pred HHHHHHHHcCCeEEecCCCCCHHH--HHHHHhhCCceEEEEeC
Q psy2835 65 YSDLGAIYAGGFAAGMYTTNSPEA--CLHCLVTSDANICVVED 105 (305)
Q Consensus 65 ~~~~a~~~~G~~~v~i~~~~~~~~--~~~~l~~~~~~~v~~~~ 105 (305)
.++.+++.-|-.++.-++.+.... +...+...+.++.+++.
T Consensus 95 ~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 95 LVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred HHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 344455566666666666665322 23455666777776654
No 263
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=56.39 E-value=96 Score=27.87 Aligned_cols=91 Identities=9% Similarity=0.009 Sum_probs=67.2
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. .+..+|++.+...+..+...+ ++ ..+|++....+-..-+ ...+++++..|+..+.
T Consensus 15 ~~~~~~a~~~---------~~~~~ty~el~~~~~~~a~~L~~~g~-~~~~~v~l~~~~~~~~--~~~~la~~~~G~~~v~ 82 (458)
T PRK09029 15 VRPQAIALRL---------NDEVLTWQQLCARIDQLAAGFAQQGV-VEGSGVALRGKNSPET--LLAYLALLQCGARVLP 82 (458)
T ss_pred hCCCceeeec---------CCcceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEecCCCHHH--HHHHHHHHHcCCEEee
Confidence 3567777652 123589999988887766654 56 7889988887776533 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEech
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.+....++.+...+++.++..+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (458)
T PRK09029 83 LNPQLPQPLLEELLPSLTLDFALVLE 108 (458)
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 87776667888888898988877644
No 264
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=56.16 E-value=85 Score=28.90 Aligned_cols=92 Identities=10% Similarity=0.088 Sum_probs=67.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. + ...+|+..+...+..+...+ ++ .+++++...++-..- ....+++++..|+..+.
T Consensus 35 ~~p~~~a~~~---~------~~~~Ty~el~~~~~~~a~~L~~~g~-~~g~~V~i~~~~~~~--~~~~~la~~~~G~~~v~ 102 (527)
T TIGR02275 35 RYPDAIAIIC---G------NRQWSYRELDQRADNLAAGLTKLGI-GQGDTAVVQLPNIAE--FYIVFFALLKLGIAPVL 102 (527)
T ss_pred HCCCceEEEe---C------CceecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCcHH--HHHHHHHHHHcCeEEec
Confidence 3567777653 1 23689999988777666553 56 788998888876653 34447899999998886
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
......++.+...+++.++..+...+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~~li~~~~ 129 (527)
T TIGR02275 103 ALFSHRKSELTAYAQQIEPALYIIDRA 129 (527)
T ss_pred cccccCHHHHHHHHHhcCCcEEEEcCc
Confidence 665554688899999999999887654
No 265
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=56.06 E-value=59 Score=21.81 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCeEEEE-ecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 28 SDLGAIYAGGLAKAFLKLGLERYHSVCII-GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 28 ~el~~~~~~~la~~L~~~g~~~gd~V~i~-~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
++=++ .+..++..+...+ ..+.|.+. ..+-++.+.+.--+.+.+++.+..+ ..-++.....++..+++-++.
T Consensus 6 ~dRye-Ts~~va~~~~~~~--~~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~i 78 (92)
T PF04122_consen 6 ADRYE-TSAKVAKKFYPDN--KSDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYI 78 (92)
T ss_pred CCHHH-HHHHHHHHhcccC--CCCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEE
Confidence 33445 4666666654433 33444444 4444454444444445688888888 444466777777665444433
No 266
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=55.90 E-value=90 Score=28.34 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=59.3
Q ss_pred EechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|+..+...+..+...+ ++ .+++++....+-..- ....+++.+..|+..+..+....++.+...+++.++..+
T Consensus 27 ~~t~~~l~~~~~~~a~~l~~~g~-~~~~~v~~~~~~~~~--~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (503)
T PRK04813 27 KLTYGQLKEDSDALAAFIDSLKL-PDKSPIIVFGHMSPE--MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLI 103 (503)
T ss_pred EEeHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEE
Confidence 589999988777665543 55 678998888876543 334488999999998888776656788888898898888
Q ss_pred Eech
Q psy2835 261 LAVP 264 (305)
Q Consensus 261 ~~~P 264 (305)
+...
T Consensus 104 ~~~~ 107 (503)
T PRK04813 104 IATE 107 (503)
T ss_pred Eecc
Confidence 7754
No 267
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=55.84 E-value=35 Score=24.00 Aligned_cols=40 Identities=18% Similarity=0.012 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+...+...|+.+++.|++++.++.....+.+.+...|..
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~ 104 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYK 104 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 4556677889989999999999887777777777788863
No 268
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=55.38 E-value=57 Score=26.62 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+...+.+.|..+++.| +....+..-..+.++|...|..+..+-|..........++..+++++.++..
T Consensus 37 ~~l~~a~~~g~~~~~~v-v~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 37 NLILLAEEEGKLPKGVI-IESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHHHHHcCCCCCCEE-EEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34444555553344444 4444466667777788889988888777777788888899999999999876
No 269
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=53.93 E-value=1e+02 Score=29.10 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=68.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +..| ....+|+..+...+..+...+ ++ .++|++...++-+.-+ +..+++++..|+.++..
T Consensus 52 ~p~~~a~~~~--~~~~--~~~~~Ty~el~~~v~~~A~~L~~~Gv-~~gd~Vai~~~n~~e~--~~~~lA~~~~Gav~vpl 124 (614)
T PRK08180 52 APDRVFLAER--GADG--GWRRLTYAEALERVRAIAQALLDRGL-SAERPLMILSGNSIEH--ALLALAAMYAGVPYAPV 124 (614)
T ss_pred CCCCceeeec--cCCC--ceeEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEecCCCHHH--HHHHHHHHHcCCeEeee
Confidence 5677776542 1122 235789999998887766654 66 8899999888776533 34478999999999988
Q ss_pred CCccc-----hhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNAL-----KGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~-----~~~~~~~i~~~~vt~~~~~P 264 (305)
+.... +..+...++..++..++...
T Consensus 125 ~~~~~~~~~~~~~l~~~l~~~~~~~li~~~ 154 (614)
T PRK08180 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADD 154 (614)
T ss_pred ccccccccCCHHHHHHHHhcCCCcEEEEcC
Confidence 76543 46888889999999888764
No 270
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=53.87 E-value=1.1e+02 Score=28.23 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=60.3
Q ss_pred EechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|+..+...+..+... .++ .++|++...++-+.-+ ...+++.+..|+.++.......+..+...++..++..+
T Consensus 46 ~~ty~el~~~~~~~a~~L~~~gi-~~g~~V~i~~~~~~~~--~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~v 122 (541)
T TIGR03205 46 PITYTELEAMAETAAAALLRAGY-GKDASVALYLGNTPDH--PINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLL 122 (541)
T ss_pred EeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCChHH--HHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEE
Confidence 68999988876665544 367 8899999988865522 33478889999999988776657899999999999998
Q ss_pred Eech
Q psy2835 261 LAVP 264 (305)
Q Consensus 261 ~~~P 264 (305)
....
T Consensus 123 i~~~ 126 (541)
T TIGR03205 123 ITSD 126 (541)
T ss_pred EEeC
Confidence 7654
No 271
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=53.13 E-value=2e+02 Score=27.11 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=71.5
Q ss_pred CCCceeEEEec--cCCCCCCcceEechhHHHHHHHHHHHhh--ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYT--SGTEGASKPVMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~T--SGtTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++... .+++|. ...+|+..+...+..+...+ .+ .++|++...++-..- ++..+++++..|+..+.
T Consensus 47 ~~~~~a~~~~~~~~~~~g~--~~~~Ty~el~~~~~~lA~~L~~~~-~~gd~V~l~~~n~~e--~~~~~lA~~~aG~v~vp 121 (612)
T PRK12476 47 VGDTVAYRYLDHSHSAAGC--AVELTWTQLGVRLRAVGARLQQVA-GPGDRVAILAPQGID--YVAGFFAAIKAGTIAVP 121 (612)
T ss_pred CCCceEEEEEccCCCCCCc--ceEEeHHHHHHHHHHHHHHHHHhc-CCCCEEEEECCCChh--HHHHHHHHHHcCceeEe
Confidence 56777765432 112232 34689999988777665544 25 788999998888753 34457899999998886
Q ss_pred e-CCccc--hhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 A-DKNAL--KGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~-~~~~~--~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
. +.... ++.+...++..++..+...+.....+
T Consensus 122 l~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~ 156 (612)
T PRK12476 122 LFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAV 156 (612)
T ss_pred cCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHH
Confidence 6 33221 46788999999999999988766554
No 272
>PRK07476 eutB threonine dehydratase; Provisional
Probab=52.85 E-value=1.5e+02 Score=25.49 Aligned_cols=67 Identities=10% Similarity=-0.053 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+...+.+.|..+| .+....+..-..+.+++...|..+..+-|...+......++..++++++++..
T Consensus 56 ~~i~~a~~~~~~~g---vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T PRK07476 56 NALLSLSAQERARG---VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS 122 (322)
T ss_pred HHHHhhhhhhhCCe---EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33334455554443 33445666777788888889988777666666677788899999999999864
No 273
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=52.61 E-value=25 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=26.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCI 55 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i 55 (305)
.-+||.++.+ .+..+|..+.+.|.+|.-.|++
T Consensus 5 ~~vSw~~I~~-~~~~lA~kI~~s~~~PDvIiai 36 (192)
T COG2236 5 LYVSWEEIHR-LCRALAEKIRASGFKPDVIVAI 36 (192)
T ss_pred EEecHHHHHH-HHHHHHHHHHHcCCCCCEEEEE
Confidence 3589999999 6999999999999998643333
No 274
>KOG1138|consensus
Probab=52.15 E-value=60 Score=29.65 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=43.7
Q ss_pred CCCCCCeEEEEecC-ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 46 GLERYHSVCIIGFN-APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 46 g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
|..+...|.+.-|+ +..-+.+=|-=+...++.+|++.++.-+.+..++++.+|++++|.+.
T Consensus 414 g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpea 475 (653)
T KOG1138|consen 414 GLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEA 475 (653)
T ss_pred cCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEEChhh
Confidence 55544445554443 33333333444566788999999999999999999999999999865
No 275
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=52.13 E-value=87 Score=28.37 Aligned_cols=55 Identities=7% Similarity=-0.045 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++++||.|++-.+. +.....++...|+.+++++.. .+.+.+...+.. +.++|+..
T Consensus 107 ~~~pGd~VIv~~~t---~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~-~tkaVi~~ 166 (438)
T PRK15407 107 ALKPGDEVITVAAG---FPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP-KTKAIMIA 166 (438)
T ss_pred CCCCCCEEEECCCC---cHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc-CCeEEEEe
Confidence 67888887665443 344455666778877766432 356677776643 55666654
No 276
>KOG0350|consensus
Probab=51.73 E-value=49 Score=30.25 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=82.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe--C
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA--D 240 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~--~ 240 (305)
.+.|+|. +.-||.-|-..+.-.-+-. ...-+ -..-+.+..+|.--....+...|.-+..|.-+.+. .
T Consensus 182 r~rDIcV----~ApTGSGKTLaY~iPIVQ~-----L~~R~--v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~s 250 (620)
T KOG0350|consen 182 RPRDICV----NAPTGSGKTLAYVIPIVQL-----LSSRP--VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLS 250 (620)
T ss_pred CCCceEE----ecCCCCCceeeehhHHHHH-----HccCC--ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecc
Confidence 3566664 4566767766655432221 11111 12356778888888777888888888877765544 3
Q ss_pred Cccc-hhHHHHHhh---hcCCcEEEechHHHHHHHHHHH-HhhcccChHHHHHHHHHHHhhhHHHhhh
Q psy2835 241 KNAL-KGSLINTLL---EVRPHVFLAVPRVWEKIHEKLM-AVGKQTTGVKRWIANYAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~-~~~~~~~i~---~~~vt~~~~~P~~~~~l~~~~~-~~~~~~~sl~~~~~~~a~~~g~~~~~~~ 303 (305)
.... ..+..+... ..+++++.+||. +|+.|.. .+..++.+||+.+..-|.+.+-..|+..
T Consensus 251 gq~sl~~E~~qL~~~~~~~~~DIlVaTPG---RLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~W 315 (620)
T KOG0350|consen 251 GQNSLEDEARQLASDPPECRIDILVATPG---RLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEW 315 (620)
T ss_pred cccchHHHHHHHhcCCCccccceEEcCch---HHHHhccCCCCcchhhceEEEechHHHHHHHHHHHH
Confidence 3332 233334443 345899999997 5677765 5788999999999988888887777654
No 277
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=51.41 E-value=47 Score=29.59 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=27.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC-------CCCCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY-------TTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~-------~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+.+||.|++-.|.-+.+ .-.+..+|+.+++++ .....+++...+.. +.++|+..
T Consensus 110 ~~pGDeVlip~P~Y~~y---~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln 170 (393)
T COG0436 110 LNPGDEVLIPDPGYPSY---EAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILN 170 (393)
T ss_pred cCCCCEEEEeCCCCcCH---HHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEe
Confidence 34566655555533222 222334455544443 22346666666666 66666664
No 278
>PRK06382 threonine dehydratase; Provisional
Probab=51.40 E-value=1.8e+02 Score=26.08 Aligned_cols=63 Identities=11% Similarity=-0.052 Sum_probs=45.6
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+.+.+..+| .+....+..-..+.++|...|..+..+=|...+......++..+++++++...
T Consensus 66 ~~~~~~~~~g---vv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~ 128 (406)
T PRK06382 66 KLSEDELRNG---VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD 128 (406)
T ss_pred hcchhccCCe---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCC
Confidence 3444444444 34455566667778889899988887777777677778899999999999874
No 279
>PRK14057 epimerase; Provisional
Probab=51.22 E-value=1.4e+02 Score=24.75 Aligned_cols=64 Identities=9% Similarity=-0.019 Sum_probs=46.3
Q ss_pred HHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC----------eEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG----------FAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 39 a~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~----------~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
...+.+.| .|.|.+..+.+....-.+--+-..|+ .-+.++|..+.+.+..++...+.-+|.+-+
T Consensus 91 i~~~~~aG---ad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~ 164 (254)
T PRK14057 91 AQACVKAG---AHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVN 164 (254)
T ss_pred HHHHHHhC---CCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEEC
Confidence 33444454 57899998876655555555666675 688899999999999999988776666643
No 280
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=51.10 E-value=44 Score=22.85 Aligned_cols=53 Identities=9% Similarity=-0.186 Sum_probs=37.6
Q ss_pred ccchHHHHHHH---HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 24 EWFYSDLGAIY---AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 24 ~~Ty~el~~~~---~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+.+.++.+.. .+.+...+...+..+++.|++++.++.....+.+.+...|..
T Consensus 37 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~ 92 (106)
T cd01519 37 NIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSKAAAELARSLGYE 92 (106)
T ss_pred EechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHHHHHHHHHHcCCc
Confidence 46677765410 234666677778878889999999988777777777888864
No 281
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=51.02 E-value=1e+02 Score=32.29 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=65.4
Q ss_pred EechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|++.+...+..+...+ ++ .+++++...++-+.- .+..+++.+..|+..+..+.....+.+...++..++..+
T Consensus 483 ~~Ty~eL~~~~~~la~~L~~~g~-~~g~~V~l~~~~~~~--~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~ 559 (1296)
T PRK10252 483 QFSYREMREQVVALANLLRERGV-KPGDSVAVALPRSVF--LTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLL 559 (1296)
T ss_pred cEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEE
Confidence 589999988777666554 66 788999888877653 345589999999999988877656788888999999999
Q ss_pred EechHHHHHH
Q psy2835 261 LAVPRVWEKI 270 (305)
Q Consensus 261 ~~~P~~~~~l 270 (305)
...+.....+
T Consensus 560 i~~~~~~~~~ 569 (1296)
T PRK10252 560 ITTADQLPRF 569 (1296)
T ss_pred EECcchhhhc
Confidence 8877655443
No 282
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=50.97 E-value=1.7e+02 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=15.5
Q ss_pred HHHcCCeEEecCC----CCCHHHHHHHHhhCCceEEEE
Q psy2835 70 AIYAGGFAAGMYT----TNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 70 ~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+...|+.+++++. ..+.+++...+...++++++.
T Consensus 122 ~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l 159 (356)
T PRK04870 122 AKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFL 159 (356)
T ss_pred HHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 3444554444422 234455555554444555444
No 283
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=50.85 E-value=68 Score=28.44 Aligned_cols=41 Identities=10% Similarity=-0.047 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCeEEecCCCCCH-HHHHHHHhhCCceEEEEeC
Q psy2835 65 YSDLGAIYAGGFAAGMYTTNSP-EACLHCLVTSDANICVVED 105 (305)
Q Consensus 65 ~~~~a~~~~G~~~v~i~~~~~~-~~~~~~l~~~~~~~v~~~~ 105 (305)
.++.+++..|-.++..++.+.. ......+...+.++.+++.
T Consensus 83 ~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~ 124 (385)
T PRK08574 83 TLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP 124 (385)
T ss_pred HHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC
Confidence 3444555556555544555442 2222223455555555543
No 284
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=49.97 E-value=86 Score=28.37 Aligned_cols=14 Identities=14% Similarity=0.041 Sum_probs=7.1
Q ss_pred HHhhCCceEEEEeC
Q psy2835 92 CLVTSDANICVVED 105 (305)
Q Consensus 92 ~l~~~~~~~v~~~~ 105 (305)
.+...+.++.+++.
T Consensus 123 ~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 123 TLRRFGIETTFVKP 136 (433)
T ss_pred HHhhCCeEEEEECC
Confidence 34445555555553
No 285
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=49.79 E-value=1.8e+02 Score=27.22 Aligned_cols=100 Identities=12% Similarity=0.179 Sum_probs=73.1
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhc-c-CCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK-L-ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~-~-~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
+..+ |+|-+-.++. -.+|++.|...+..+...+. . .-.+|++...+|..--. ...+++++..|+-.+.....
T Consensus 25 ~~~a-ii~~~e~~~~---~~~Ty~~L~~~v~r~A~~L~~~~gvkGDrV~iymp~~pe~--~~a~LA~~riGAI~~~vf~~ 98 (528)
T COG0365 25 DDTA-IIFDGEDGLF---RELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEA--VIALLATARIGAIPAVVSPG 98 (528)
T ss_pred CceE-EEEEcCCCCc---eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEeecccC
Confidence 4444 5555443343 68999999998877777663 1 02799999999998633 34478999999877766655
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
..++.+...+...++.++......++..
T Consensus 99 f~~~al~~Ri~d~~~k~vit~d~~~~~g 126 (528)
T COG0365 99 LSAEAVADRIADLGPKVLIADDGTFRNG 126 (528)
T ss_pred CCHHHHHHHHHccCCCEEEEeccccccc
Confidence 5579999999999999998777766643
No 286
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=49.70 E-value=80 Score=21.40 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC---------CCCCeEEEE-ecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHh
Q psy2835 28 SDLGAIYAGGLAKAFLKLGL---------ERYHSVCII-GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 94 (305)
Q Consensus 28 ~el~~~~~~~la~~L~~~g~---------~~gd~V~i~-~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~ 94 (305)
.+..+| .+.+.+.+.+.|. ++-|.|.|+ .|+......+.+++...|.+-.-.-+-.+.+++..+++
T Consensus 16 ~~~~~R-~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~k 91 (91)
T PF08734_consen 16 KDSPDR-AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIVK 91 (91)
T ss_pred hhcHHH-HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHhC
Confidence 333454 5556666666663 345777776 77777777788899999987777777888888877653
No 287
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=49.52 E-value=18 Score=23.16 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCCCCCeEEE
Q psy2835 36 GGLAKAFLKLGLERYHSVCI 55 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i 55 (305)
..+-..|++.|+++||.|-|
T Consensus 43 ~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 43 MGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp TTHHHHHHTTT--TT-EEEE
T ss_pred CCHHHHHHHcCCCCCCEEEE
Confidence 34556778889999999876
No 288
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=49.23 E-value=1e+02 Score=25.91 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=31.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC----------CCCHHHHHHHHhh-CCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT----------TNSPEACLHCLVT-SDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~----------~~~~~~~~~~l~~-~~~~~v~~~ 104 (305)
+++||+|.+.-+.. .....++...|+.++.+++ ..+.+++.+.++. .++++++..
T Consensus 96 ~~~gd~Vlv~~~~h---~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~ 161 (294)
T cd00615 96 CGPGDKILIDRNCH---KSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVIT 161 (294)
T ss_pred CCCCCEEEEeCCch---HHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEE
Confidence 46777766654332 2233445566776665544 2456777777754 456655554
No 289
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=49.21 E-value=23 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=14.6
Q ss_pred HHHHHHHcCCCCCCeEEEE
Q psy2835 38 LAKAFLKLGLERYHSVCII 56 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~ 56 (305)
+-..|++.|+++||.|-|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHHcCCCCCCEEEEc
Confidence 4455678899999999874
No 290
>PRK06145 acyl-CoA synthetase; Validated
Probab=48.61 E-value=1.5e+02 Score=26.85 Aligned_cols=80 Identities=8% Similarity=-0.029 Sum_probs=60.5
Q ss_pred EechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
.+|+..+...+..+...+ ++ .+++++...++-.-- ....+++++..|+..+..+....+..+...+++.++..+
T Consensus 27 ~~ty~el~~~v~~~a~~L~~~g~-~~~~~v~i~~~~~~~--~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~ 103 (497)
T PRK06145 27 EISYAEFHQRILQAAGMLHARGI-GQGDVVALLMKNSAA--FLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLL 103 (497)
T ss_pred ceeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEE
Confidence 589999988777666554 56 788888888776542 334478999999999888776656788888999999888
Q ss_pred EechHH
Q psy2835 261 LAVPRV 266 (305)
Q Consensus 261 ~~~P~~ 266 (305)
...+..
T Consensus 104 i~~~~~ 109 (497)
T PRK06145 104 LVDEEF 109 (497)
T ss_pred EEccch
Confidence 776544
No 291
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=47.65 E-value=1.7e+02 Score=24.63 Aligned_cols=69 Identities=12% Similarity=-0.056 Sum_probs=50.4
Q ss_pred HHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 37 GLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 37 ~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+...+.+.|. .+|+.|+ ....+..-..+.++|...|..+..+-|..........++..++++++++..
T Consensus 39 ~~l~~a~~~g~~~~~~~vv-~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~ 108 (291)
T cd01561 39 YMIEDAEKRGLLKPGTTII-EPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEA 108 (291)
T ss_pred HHHHHHHHcCCCCCCCEEE-EeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 33445555664 3455554 467777778888888899988877777666667778899999999999875
No 292
>PRK07868 acyl-CoA synthetase; Validated
Probab=47.39 E-value=3.3e+02 Score=27.82 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=69.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. . +-.+|++.+...+..+...+ ++ .++|++...++-.--+ +..+++++..|+..+.
T Consensus 459 ~~pd~~Al~~-~--------~~~lTY~eL~~ra~rlA~~L~~~Gv-~~Gd~VaI~~~n~~e~--v~a~lA~~~aGav~vp 526 (994)
T PRK07868 459 DAPKGEFLLF-D--------GRVHTYEAVNRRINNVVRGLIAVGV-RQGDRVGVLMETRPSA--LVAIAALSRLGAVAVL 526 (994)
T ss_pred HCCCCeEEEe-C--------CceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHHH--HHHHHHHHhcCCEEEE
Confidence 4567777642 1 12689999998887766654 67 8899998888866532 3447899999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+.. ..+...++..++..++..+..+..+
T Consensus 527 l~p~---~~l~~il~~s~~~~li~~~~~~~~~ 555 (994)
T PRK07868 527 MPPD---TDLAAAVRLGGVTEIITDPTNLEAA 555 (994)
T ss_pred eCCc---hhHHHHHhccCCeEEEEChHHHHHH
Confidence 8764 4667788888999998887776654
No 293
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=46.75 E-value=95 Score=23.00 Aligned_cols=27 Identities=7% Similarity=-0.165 Sum_probs=13.7
Q ss_pred CCeEEEEecCCh---hHHHHHHHHHHcCCe
Q psy2835 50 YHSVCIIGFNAP---EWFYSDLGAIYAGGF 76 (305)
Q Consensus 50 gd~V~i~~~n~~---~~~~~~~a~~~~G~~ 76 (305)
...|.|..+... ..+-++=.|-.+|..
T Consensus 99 ~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~ 128 (141)
T PRK11267 99 DTTIFFRADKTVDYETLMKVMDTLHQAGYL 128 (141)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 445666655543 333444455566654
No 294
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=46.38 E-value=1.5e+02 Score=26.23 Aligned_cols=37 Identities=3% Similarity=-0.173 Sum_probs=17.4
Q ss_pred HHHHHcCCeEEecCCCCCH-H-HHHHHHhhCCceEEEEe
Q psy2835 68 LGAIYAGGFAAGMYTTNSP-E-ACLHCLVTSDANICVVE 104 (305)
Q Consensus 68 ~a~~~~G~~~v~i~~~~~~-~-~~~~~l~~~~~~~v~~~ 104 (305)
.+++..|-.++..++.+.. - -+..+....+.++.+.+
T Consensus 84 ~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d 122 (382)
T TIGR02080 84 TALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD 122 (382)
T ss_pred HHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEEC
Confidence 3444556665555566542 2 22233333345555554
No 295
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=46.17 E-value=1.9e+02 Score=24.77 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=42.0
Q ss_pred CeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC--CHHHHH---HHHhhCCceEEEEeChHHHHHHHHHhccCC
Q psy2835 51 HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN--SPEACL---HCLVTSDANICVVEDDKQLEKILKVKAQCP 120 (305)
Q Consensus 51 d~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~--~~~~~~---~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 120 (305)
.+..+...+...++.--+++-..|.. -+.+.. ++.++. ..+++.+.++||++....-..+..+.++..
T Consensus 203 ~~~~i~~H~af~Yf~~~ygl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g 275 (311)
T PRK09545 203 GKGYFVFHDAYGYFEKHYGLTPLGHF--TVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTS 275 (311)
T ss_pred CCcEEEECchHHHHHHhCCCceeeee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcC
Confidence 34556677777777766766555532 233332 456654 555678899999998765555555655553
No 296
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=46.15 E-value=90 Score=28.46 Aligned_cols=57 Identities=16% Similarity=-0.014 Sum_probs=35.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-CCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 49 RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-TNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 49 ~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+||+|++=-| +..-....+-......+.+|++. ...++.++..++..+++++++...
T Consensus 178 pGd~v~vE~P-tY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~ 235 (459)
T COG1167 178 PGDTVLVEDP-TYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPT 235 (459)
T ss_pred CCCEEEEcCC-CcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCC
Confidence 5666665444 33333333333333344444442 567999999999999999998764
No 297
>PRK10595 SOS cell division inhibitor; Provisional
Probab=44.65 E-value=1.2e+02 Score=23.34 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=9.3
Q ss_pred HHHHHHhhCCceEEEE
Q psy2835 88 ACLHCLVTSDANICVV 103 (305)
Q Consensus 88 ~~~~~l~~~~~~~v~~ 103 (305)
.+++.|+.-.+.+|++
T Consensus 97 a~EqaLrsG~~~aVL~ 112 (164)
T PRK10595 97 AMERALRTGNYSVVLG 112 (164)
T ss_pred HHHHHHhhCCCcEEEE
Confidence 3455566666666665
No 298
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=44.63 E-value=1.1e+02 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=40.1
Q ss_pred EEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+....+..-..+.++|...|..++.+-|.....+....++..++++++++..
T Consensus 69 v~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~ 120 (304)
T cd01562 69 VAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED 120 (304)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3345577777777788888887776666666677788899999999999875
No 299
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=44.59 E-value=1.8e+02 Score=23.93 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC--CCCHHH---HHHHHhhCCceEEE
Q psy2835 28 SDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT--TNSPEA---CLHCLVTSDANICV 102 (305)
Q Consensus 28 ~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~---~~~~l~~~~~~~v~ 102 (305)
+++..+ .+.+.+.+.+.--.-..+..+...+...++.-.+++-..|.. -..+ ..++++ +...+++.++++||
T Consensus 128 ~~~~~~-L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~~~~~~--~~~~~~~ps~~~l~~l~~~ik~~~v~~i~ 204 (256)
T PF01297_consen 128 EKYLKE-LDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLKVIGVI--EISPGEEPSPKDLAELIKLIKENKVKCIF 204 (256)
T ss_dssp HHHHHH-HHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-EEEEEE--SSSSSSSS-HHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHH-HHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCceeeee--ccccccCCCHHHHHHHHHHhhhcCCcEEE
Confidence 344443 444444444331111226778888888888777776655544 1222 234555 45666889999999
Q ss_pred EeChHHHHHHHHHhccCCCccEEEEccCC
Q psy2835 103 VEDDKQLEKILKVKAQCPKLKAIVQYEGK 131 (305)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 131 (305)
++....-..+..+.++.. .+. +.++..
T Consensus 205 ~e~~~~~~~~~~la~~~g-~~v-v~ld~l 231 (256)
T PF01297_consen 205 TEPQFSSKLAEALAKETG-VKV-VYLDPL 231 (256)
T ss_dssp EETTS-THHHHHHHHCCT--EE-EESSTT
T ss_pred ecCCCChHHHHHHHHHcC-CcE-EEeCCC
Confidence 987644344444544432 333 445544
No 300
>PRK14012 cysteine desulfurase; Provisional
Probab=44.13 E-value=2.2e+02 Score=25.25 Aligned_cols=57 Identities=5% Similarity=-0.140 Sum_probs=26.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC--C--CCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT--T--NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~--~--~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.++||.|.+..............+...|+.+..++. . .+.+++...++. +.+++++.
T Consensus 91 ~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~-~t~lv~~~ 151 (404)
T PRK14012 91 QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD-DTILVSIM 151 (404)
T ss_pred cCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC-CCEEEEEE
Confidence 356676655543333333222223334655544432 2 356666666643 44555443
No 301
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=43.63 E-value=54 Score=27.56 Aligned_cols=53 Identities=9% Similarity=-0.103 Sum_probs=40.5
Q ss_pred ccchHHHHHH----HHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 24 EWFYSDLGAI----YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 24 ~~Ty~el~~~----~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+.|.++.+. ....+...|.+.|+.+++.|.+.|.++.....+++++-..|..
T Consensus 201 ~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~ 257 (281)
T PRK11493 201 NVPWTELVREGELKTTDELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVP 257 (281)
T ss_pred CCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 3556665420 1345666778889999999999999999999899988888875
No 302
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=43.57 E-value=1.6e+02 Score=23.11 Aligned_cols=78 Identities=14% Similarity=-0.004 Sum_probs=45.1
Q ss_pred HHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCH
Q psy2835 7 LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86 (305)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~ 86 (305)
..++..++.... ..+-..+..+..+. .. +.+.+.+ .+.+++++.+---++...+|. +.|...+.|||...+
T Consensus 23 ~~~~~~~~~~~~-~p~l~~~p~~a~~~-l~---~~i~~~~---~~~~~liGSSlGG~~A~~La~-~~~~~avLiNPav~p 93 (187)
T PF05728_consen 23 YFAEHGPDIQYP-CPDLPPFPEEAIAQ-LE---QLIEELK---PENVVLIGSSLGGFYATYLAE-RYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHhCCCceEE-CCCCCcCHHHHHHH-HH---HHHHhCC---CCCeEEEEEChHHHHHHHHHH-HhCCCEEEEcCCCCH
Confidence 344455555444 33334444555442 33 2333332 223888888777777777764 558888999999986
Q ss_pred HH-HHHHH
Q psy2835 87 EA-CLHCL 93 (305)
Q Consensus 87 ~~-~~~~l 93 (305)
.+ +...+
T Consensus 94 ~~~l~~~i 101 (187)
T PF05728_consen 94 YELLQDYI 101 (187)
T ss_pred HHHHHHhh
Confidence 65 44444
No 303
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=43.07 E-value=2.1e+02 Score=24.39 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh----------------------------HHHHHHHHHHcCCeEE
Q psy2835 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE----------------------------WFYSDLGAIYAGGFAA 78 (305)
Q Consensus 27 y~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~----------------------------~~~~~~a~~~~G~~~v 78 (305)
+.++.+ ..+.+...++++|+. ..|.|..-++.. ..+-.+|++..|+.++
T Consensus 128 ~~~~e~-~~~DI~~f~~~~~~d--~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 128 REQVEQ-IREDIRDFKKENGLD--RVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHH-HHHHHHHHHHHTT-S--CEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHH-HHHHHHHHHHHhCCC--cEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeE
Confidence 444445 678888888998865 245665554433 3445678889999999
Q ss_pred ecCCCCCH--HHHHHHHhhCCce
Q psy2835 79 GMYTTNSP--EACLHCLVTSDAN 99 (305)
Q Consensus 79 ~i~~~~~~--~~~~~~l~~~~~~ 99 (305)
-..|+... ..+.++.++.+..
T Consensus 205 N~tP~~~a~~P~l~ela~~~gvp 227 (295)
T PF07994_consen 205 NGTPSNIADDPALVELAEEKGVP 227 (295)
T ss_dssp E-SSSTTTTSHHHHHHHHHHTEE
T ss_pred eccCccccCCHHHHHHHHHcCCC
Confidence 88887755 7888888887754
No 304
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=42.53 E-value=1.5e+02 Score=24.13 Aligned_cols=65 Identities=11% Similarity=-0.016 Sum_probs=46.1
Q ss_pred hcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 11 RYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 11 ~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
.+||..+++- .+...+|.++.+ .+..+-..|.+.|+..- +-..+..+. -+++||.+..+-+++
T Consensus 100 e~PD~~vfDLDP~~~~~f~~v~~-~A~~~r~~L~~lgL~s~--~KTSG~kGl-------------HV~vPl~~~~~~~~v 163 (231)
T cd04863 100 GPPDRLVFDLDPGEPAGLVECAR-VALWLRDRLAALGLASF--PKTSGSKGL-------------HLYVPLDGPVSSDQT 163 (231)
T ss_pred CCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCccc--eECCCCCeE-------------EEEEEcCCCCCHHHH
Confidence 5688888875 456799999999 79988888889998641 222233333 267899998886665
Q ss_pred HH
Q psy2835 90 LH 91 (305)
Q Consensus 90 ~~ 91 (305)
..
T Consensus 164 r~ 165 (231)
T cd04863 164 KE 165 (231)
T ss_pred HH
Confidence 43
No 305
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=42.49 E-value=2.2e+02 Score=24.66 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=28.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC----CCCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT----TNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+++||.|++-.|. +.....++...|+.++.++. ....+++...++..++++++..
T Consensus 97 ~~~gd~Vlv~~p~---y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~ 155 (351)
T PRK14807 97 INKGDVVIYPHPS---FAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLC 155 (351)
T ss_pred cCCCCEEEEeCCC---hHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEe
Confidence 3567766654332 22223344455655555432 2345666666655566666643
No 306
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=42.26 E-value=1.5e+02 Score=28.65 Aligned_cols=82 Identities=9% Similarity=0.017 Sum_probs=63.6
Q ss_pred EechhHHHHHHHHHHHhhc--cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEE
Q psy2835 184 MLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFL 261 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~ 261 (305)
.+|++.+...+..+...+. . .++|++...+|-+.-+ +..+++++..|+..+.......++++...++..++..++
T Consensus 231 ~~Ty~el~~~~~~lA~~L~~~~-~~gd~Val~~~n~~e~--~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi 307 (718)
T PRK08043 231 PDSYRKLLKKTLFVGRILEKYS-VEGERIGLMLPNATIS--AAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIF 307 (718)
T ss_pred cccHHHHHHHHHHHHHHHHHhc-CCCceEEEEcCCcHHH--HHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEE
Confidence 4899999888776666542 4 6889999998887633 344788888999888776665568899999999999999
Q ss_pred echHHHH
Q psy2835 262 AVPRVWE 268 (305)
Q Consensus 262 ~~P~~~~ 268 (305)
.......
T Consensus 308 ~~~~~~~ 314 (718)
T PRK08043 308 TSRQFLD 314 (718)
T ss_pred EcHHHHh
Confidence 8877554
No 307
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=41.86 E-value=62 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+.+...+.+.|+.+++.|.+.|.++.....+++++-..|..
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~ 295 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKT 295 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 55777788889999999999999998888888888888864
No 308
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=41.65 E-value=1.5e+02 Score=26.23 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=10.2
Q ss_pred CceeEEEeccCCC
Q psy2835 165 NECCTLVYTSGTE 177 (305)
Q Consensus 165 ~~~~~i~~TSGtT 177 (305)
.+.-.++|||++|
T Consensus 200 ~~~d~v~FtS~st 212 (381)
T PRK07239 200 RGLDAVTFTSAPA 212 (381)
T ss_pred CCccEEEEcCHHH
Confidence 4567899999876
No 309
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.37 E-value=2.4e+02 Score=24.53 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHH--HcCCeEEecCCCCCHHHH----HHHHhhCCceEEEEeCh
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAI--YAGGFAAGMYTTNSPEAC----LHCLVTSDANICVVEDD 106 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~--~~G~~~v~i~~~~~~~~~----~~~l~~~~~~~v~~~~~ 106 (305)
+-++|++|.+.|. +|.+...++.. -.+=.+..| +.|+.++--.+...+..+ .+....-+.++|++|..
T Consensus 156 IaKLA~~l~~~g~----~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTA 230 (340)
T COG0552 156 IAKLAKYLKQQGK----SVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTA 230 (340)
T ss_pred HHHHHHHHHHCCC----eEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 5567777887753 57777766653 344466666 567766654444444332 23344556777888764
No 310
>KOG1179|consensus
Probab=41.36 E-value=3.1e+02 Score=25.86 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=61.6
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEec--CChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~--n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+|+..... ++.- ...-.|+++.|+|-+.+| ++.-.++-.-+|+..|+++| |....|+.....-..+.++.++-
T Consensus 262 ith~r~~~-~a~g---~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~V-lrkKFSAS~FW~DC~k~~~Tv~Q 336 (649)
T KOG1179|consen 262 ITHLRYLQ-GAAG---FYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVV-LRKKFSASNFWDDCRKYNVTVIQ 336 (649)
T ss_pred HHHHHHHH-HHHH---HHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEE-EecccchhhhHHHHHHhCCeeee
Confidence 77777766 3332 334569999999988766 57788888889999999877 78899999999999999999988
Q ss_pred EeCh
Q psy2835 103 VEDD 106 (305)
Q Consensus 103 ~~~~ 106 (305)
.-.|
T Consensus 337 YIGE 340 (649)
T KOG1179|consen 337 YIGE 340 (649)
T ss_pred hHHH
Confidence 7766
No 311
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=40.97 E-value=1.1e+02 Score=25.41 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=46.4
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
-+++.+.. ++..+..|..--++..|+|+++..+..+ .-+.++|..+.+.++..|+...+
T Consensus 92 ~~~~Rm~a--aKG~~~~lL~dAYq~RdkvavI~F~G~~-------------A~lll~pT~sv~~~~~~L~~l~~ 150 (261)
T COG1240 92 AARRRMAA--AKGAALSLLRDAYQRRDKVAVIAFRGEK-------------AELLLPPTSSVELAERALERLPT 150 (261)
T ss_pred hhHHHHHH--HHHHHHHHHHHHHHccceEEEEEecCCc-------------ceEEeCCcccHHHHHHHHHhCCC
Confidence 34555554 8888888887778999999999988765 23668999999999988888764
No 312
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=40.91 E-value=1.9e+02 Score=25.50 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=32.7
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC--C----CCHHHHHHHHhhC------CceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT--T----NSPEACLHCLVTS------DANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~--~----~~~~~~~~~l~~~------~~~~v~~~ 104 (305)
+++||.|.+... .+...+.++...|+.++.++. . .+.+.+...++.. ++++|++.
T Consensus 99 ~~~gd~Vlv~~~---~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~ 165 (387)
T PRK09331 99 CKKGDYVVLDGL---AHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT 165 (387)
T ss_pred cCCCCEEEECCC---chHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 367787665432 223333456667877776654 1 4577777777643 56777654
No 313
>PRK05967 cystathionine beta-lyase; Provisional
Probab=40.90 E-value=2.4e+02 Score=25.23 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC-hhHHHHHHHHHHcCCeEEecCCCCCHHH--HHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGFAAGMYTTNSPEA--CLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~--~~~~l~~~~~~~ 100 (305)
.++|+...+-..+.+.+.+.... .++. +++..++ .-+..++++++..|-.++..++.+.... +...++..+.++
T Consensus 55 ~y~YsR~gnPt~~~Le~~la~le--~~~~-~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v 131 (395)
T PRK05967 55 KYTYGTRGTPTTDALCKAIDALE--GSAG-TILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEV 131 (395)
T ss_pred CCccCCCCChHHHHHHHHHHHHh--CCCC-EEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEE
Confidence 35554444323444555554432 1222 2333333 3444455567777777777777776543 345677778887
Q ss_pred EEEeCh
Q psy2835 101 CVVEDD 106 (305)
Q Consensus 101 v~~~~~ 106 (305)
.+++..
T Consensus 132 ~~vd~~ 137 (395)
T PRK05967 132 EYYDPE 137 (395)
T ss_pred EEeCCC
Confidence 777643
No 314
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=40.86 E-value=1.1e+02 Score=26.36 Aligned_cols=68 Identities=15% Similarity=-0.017 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+..+...+.+.| ++.|... ..+..-..+.++|...|..+..+-|..........++..++++++++..
T Consensus 58 a~~~l~~a~~~g---~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~ 125 (324)
T cd01563 58 MTVAVSKAKELG---VKAVACA-STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN 125 (324)
T ss_pred HHHHHHHHHHcC---CCEEEEe-CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECCc
Confidence 444444455555 4444433 4455555566788888887776655555567778899999999999875
No 315
>PRK06348 aspartate aminotransferase; Provisional
Probab=40.59 E-value=1.7e+02 Score=25.65 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=11.9
Q ss_pred CCCcceEechhHHHHHHHHHH
Q psy2835 178 GASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 178 G~pK~v~~s~~~l~~~~~~~~ 198 (305)
|.--|.++..+.+...+....
T Consensus 240 GlRiG~~v~~~~~~~~~~~~~ 260 (384)
T PRK06348 240 GWRIGYVIAPDYIIETAKIIN 260 (384)
T ss_pred cccceeeecCHHHHHHHHHHH
Confidence 333566677776666555443
No 316
>PRK05638 threonine synthase; Validated
Probab=40.25 E-value=1.1e+02 Score=27.85 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=38.2
Q ss_pred EEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+....+..-..+.+.+...|..+..+-|...+......++..+++++.++..
T Consensus 116 v~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~ 167 (442)
T PRK05638 116 IVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGES 167 (442)
T ss_pred EEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCC
Confidence 3355566666667777788877766666555566677899999999999765
No 317
>PRK06721 threonine synthase; Reviewed
Probab=40.21 E-value=1.3e+02 Score=26.32 Aligned_cols=65 Identities=14% Similarity=-0.038 Sum_probs=43.7
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
......+.|. ...+....+..-..+.++|...|..+..+=|.. .+......++..++++++++..
T Consensus 66 ~i~~a~~~g~----~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~ 131 (352)
T PRK06721 66 AVAKAKEEGS----EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGN 131 (352)
T ss_pred HHHHHHHCCC----CEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3334455552 233444566666777788888898777666654 3556666789999999999875
No 318
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=39.90 E-value=1.7e+02 Score=23.86 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=45.9
Q ss_pred hcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 11 RYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 11 ~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
.+||..+++- .+...+|.++.+ .+..+-..|.++|+.. -+-..+..+. -+++||.+..+-++.
T Consensus 96 e~PD~lvfDLDP~~~~~f~~v~~-~A~~vr~~L~~lgL~~--f~KTSG~kGl-------------HV~vPl~~~~~~~~~ 159 (227)
T cd04861 96 ERPDRLVFDLDPGPGVPFEDVVE-AALLLRELLDELGLES--FPKTSGGKGL-------------HVYVPLAPRYTWDEV 159 (227)
T ss_pred CCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCcc--ceEccCCCeE-------------EEEEEcCCCCCHHHH
Confidence 4678888865 466899999999 7999988999999763 1222223232 367899988876665
Q ss_pred HHH
Q psy2835 90 LHC 92 (305)
Q Consensus 90 ~~~ 92 (305)
...
T Consensus 160 r~f 162 (227)
T cd04861 160 RAF 162 (227)
T ss_pred HHH
Confidence 433
No 319
>KOG0633|consensus
Probab=39.87 E-value=25 Score=29.10 Aligned_cols=71 Identities=10% Similarity=-0.044 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCC--HHHHHHHHh-hCCceEEEEeCh
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS--PEACLHCLV-TSDANICVVEDD 106 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~--~~~~~~~l~-~~~~~~v~~~~~ 106 (305)
+.+...+.+.-.-||.-=.+.+|.+..++.+--++.-++.+-+|++|+++ .+.+.++++ ++.++++|...+
T Consensus 96 DE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tSP 169 (375)
T KOG0633|consen 96 DELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTSP 169 (375)
T ss_pred HHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEEEEcCC
Confidence 34555556666678844456678888888888888899999999998764 778888885 558999998653
No 320
>PLN02550 threonine dehydratase
Probab=39.77 E-value=3.4e+02 Score=25.83 Aligned_cols=62 Identities=19% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
|.+....+| + +....+..-..+.++|...|+.+..+=|...+......++..+++++++++.
T Consensus 151 L~~e~~~~G-V--V~aSaGNhAqgvA~aA~~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~ 212 (591)
T PLN02550 151 LPKEQLDKG-V--ICSSAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS 212 (591)
T ss_pred HHHhcCCCC-E--EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 433344555 3 3356666777788889999988877777766677778889999999999875
No 321
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=39.41 E-value=64 Score=27.58 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=11.6
Q ss_pred CCCcce-EechhHHHHHHHHH
Q psy2835 178 GASKPV-MLSHDNITFNAACI 197 (305)
Q Consensus 178 G~pK~v-~~s~~~l~~~~~~~ 197 (305)
|.|-|. +..++.+...+...
T Consensus 199 ~~~~g~~~~~~~~~~~~~~~~ 219 (338)
T cd06502 199 GAPVGAVVVGNRDFIARARRR 219 (338)
T ss_pred CCccceEEECCHHHHHHHHHH
Confidence 455565 44677776665543
No 322
>PRK07503 methionine gamma-lyase; Provisional
Probab=38.80 E-value=2e+02 Score=25.66 Aligned_cols=14 Identities=0% Similarity=0.017 Sum_probs=7.3
Q ss_pred ceEechhHHHHHHH
Q psy2835 182 PVMLSHDNITFNAA 195 (305)
Q Consensus 182 ~v~~s~~~l~~~~~ 195 (305)
|++...+.+...+.
T Consensus 222 G~v~~~~~l~~~l~ 235 (403)
T PRK07503 222 GLVVGGKALADRIR 235 (403)
T ss_pred EEEEcCHHHHHHHH
Confidence 55555555554443
No 323
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=38.68 E-value=63 Score=17.09 Aligned_cols=27 Identities=7% Similarity=-0.088 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCC
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLER 49 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~ 49 (305)
..++|+.|+.+ ++.++-++..+.|=-|
T Consensus 2 ~~~i~~~~~~d-~a~rv~~f~~~ngRlP 28 (33)
T PF09373_consen 2 SGTISKEEYLD-MASRVNNFYESNGRLP 28 (33)
T ss_pred CceecHHHHHH-HHHHHHHHHHHcCCCC
Confidence 45789999999 7999998888876433
No 324
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=38.52 E-value=1.4e+02 Score=21.03 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=30.8
Q ss_pred HcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 72 YAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 72 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
..|.-++-+.+..+.+++...+.+.+|++|..+.
T Consensus 25 ~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 25 DAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 5799999999999999999999999999998864
No 325
>PRK05942 aspartate aminotransferase; Provisional
Probab=38.43 E-value=1.8e+02 Score=25.74 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=14.1
Q ss_pred CCCCCCcceEechhHHHHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~~~~ 198 (305)
|..|.--|.++..+.++..+....
T Consensus 246 ~~~GlRiG~i~~~~~l~~~l~~~~ 269 (394)
T PRK05942 246 NMAGWRVGFVVGNRHIIQGLRTLK 269 (394)
T ss_pred CChhhheeeeecCHHHHHHHHHHH
Confidence 334443577777777776665543
No 326
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=38.31 E-value=44 Score=20.47 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=17.9
Q ss_pred HHHHHHHcCCCCCCeEEEEecC
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFN 59 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n 59 (305)
-.+||.+.|+..|+.|-|-..+
T Consensus 29 ~G~WL~~aGF~~G~~v~V~v~~ 50 (57)
T PF08845_consen 29 KGKWLEEAGFTIGDPVKVRVMP 50 (57)
T ss_pred chhhhHHhCCCCCCEEEEEEEC
Confidence 4679999999999999876544
No 327
>PRK06234 methionine gamma-lyase; Provisional
Probab=38.30 E-value=2.5e+02 Score=25.05 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=17.2
Q ss_pred HHHHHcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEeC
Q psy2835 68 LGAIYAGGFAAGMYTTNSP--EACLHCLVTSDANICVVED 105 (305)
Q Consensus 68 ~a~~~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~~ 105 (305)
.+++..|-.++..++.+.. ......++..++++.+++.
T Consensus 97 ~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 97 WSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred HHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECC
Confidence 3444455544444443322 2233444555555555553
No 328
>PRK09028 cystathionine beta-lyase; Provisional
Probab=38.26 E-value=2.7e+02 Score=24.88 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=30.5
Q ss_pred EEecCChhHH-HHHHHHHHcCCeEEecCCCCCHHH--HHHHHhhCCceEEEEeC
Q psy2835 55 IIGFNAPEWF-YSDLGAIYAGGFAAGMYTTNSPEA--CLHCLVTSDANICVVED 105 (305)
Q Consensus 55 i~~~n~~~~~-~~~~a~~~~G~~~v~i~~~~~~~~--~~~~l~~~~~~~v~~~~ 105 (305)
++.+++.+.+ .++++++..|-.++..++.+.... +...+...+.++.+++.
T Consensus 80 ~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~ 133 (394)
T PRK09028 80 ALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDP 133 (394)
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECC
Confidence 3444444433 455667777877777777764332 33456667777777654
No 329
>PLN00175 aminotransferase family protein; Provisional
Probab=38.17 E-value=2.3e+02 Score=25.35 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=14.4
Q ss_pred CCCCCcceEechhHHHHHHHHHH
Q psy2835 176 TEGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 176 tTG~pK~v~~s~~~l~~~~~~~~ 198 (305)
-+|.--|.++..+.++..+....
T Consensus 263 ~~G~RiG~~v~~~~l~~~l~~~~ 285 (413)
T PLN00175 263 LTGWKIGWAIAPPHLTWGVRQAH 285 (413)
T ss_pred CcchheeeeEeCHHHHHHHHHHH
Confidence 35555677777777776655443
No 330
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=37.56 E-value=2.9e+02 Score=28.54 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=63.3
Q ss_pred eEechhHHHHHHHHHHHhh--ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 183 VMLSHDNITFNAACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
..+|++.+...+......+ +. .++|++...+|-+.-+ +..+++.+..|+..+..+....++++...+++.+++.+
T Consensus 657 ~~~Ty~el~~~~~~lA~~L~~g~-~~gd~V~i~~~n~~~~--~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~v 733 (1140)
T PRK06814 657 GPLTYRKLLTGAFVLGRKLKKNT-PPGENVGVMLPNANGA--AVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTV 733 (1140)
T ss_pred CccCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEcCCchHH--HHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEE
Confidence 3589999888776655443 45 7889988888876533 34478999999888877766657899999999999999
Q ss_pred EechHHHH
Q psy2835 261 LAVPRVWE 268 (305)
Q Consensus 261 ~~~P~~~~ 268 (305)
...+....
T Consensus 734 i~~~~~~~ 741 (1140)
T PRK06814 734 LTSRAFIE 741 (1140)
T ss_pred EecHHHHh
Confidence 98776544
No 331
>KOG1371|consensus
Probab=37.07 E-value=2.8e+02 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.5
Q ss_pred eeEEEeccCCC--CCCcceEechhHH
Q psy2835 167 CCTLVYTSGTE--GASKPVMLSHDNI 190 (305)
Q Consensus 167 ~~~i~~TSGtT--G~pK~v~~s~~~l 190 (305)
...+.|+|++| |.|+-+++|++.=
T Consensus 120 ~~~~V~sssatvYG~p~~ip~te~~~ 145 (343)
T KOG1371|consen 120 VKALVFSSSATVYGLPTKVPITEEDP 145 (343)
T ss_pred CceEEEecceeeecCcceeeccCcCC
Confidence 55677777777 9999999988743
No 332
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=37.03 E-value=3.4e+02 Score=25.10 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHh---hCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 82 TTNSPEACLHCLV---TSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 82 ~~~~~~~~~~~l~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..++..+...+++ .-..+++++..- ..+ -=++|.+..+++++..+++ +..+...+..
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSV-gEE-----GLDIp~vDlVifYEpvpSe-----IR~IQR~GRT--------- 466 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSV-GEE-----GLDIPEVDLVIFYEPVPSE-----IRSIQRKGRT--------- 466 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEccc-ccc-----cCCCCcccEEEEecCCcHH-----HHHHHhhCcc---------
Confidence 4566666555554 555677777532 001 1236788888888765432 2223333321
Q ss_pred hhccCCCceeEEEeccCCCC
Q psy2835 159 LETIATNECCTLVYTSGTEG 178 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG 178 (305)
......-.+++.|.||-.
T Consensus 467 --GR~r~Grv~vLvt~gtrd 484 (542)
T COG1111 467 --GRKRKGRVVVLVTEGTRD 484 (542)
T ss_pred --ccCCCCeEEEEEecCchH
Confidence 112355578999999543
No 333
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=36.83 E-value=1.9e+02 Score=23.55 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=45.1
Q ss_pred hcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 11 RYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 11 ~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
.+||..+++- .+....|.++.+ .+..+-..|.+.|+.. -+-..+..+. -+++||.+..+-++.
T Consensus 97 e~PD~lvfDLDP~~~~~f~~v~~-~A~~vr~~L~~lgL~s--f~KTSG~kGl-------------Hv~vPl~~~~~~~~~ 160 (228)
T cd04865 97 DHPDELVIDLDPQPGTSFEDVVE-VALLVREVLDELGLRG--YPKTSGARGL-------------HIYVPIAPRYTFEEV 160 (228)
T ss_pred CCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCcc--ceEccCCCeE-------------EEEEEcCCCCCHHHH
Confidence 4678888865 456899999999 7998888889999863 1222233332 267888888876654
Q ss_pred HH
Q psy2835 90 LH 91 (305)
Q Consensus 90 ~~ 91 (305)
..
T Consensus 161 r~ 162 (228)
T cd04865 161 RR 162 (228)
T ss_pred HH
Confidence 43
No 334
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=36.60 E-value=3e+02 Score=24.35 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=43.7
Q ss_pred CeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 51 HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 51 d~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..-.+....+..-..+.+++...|..+..+=|...+......++..++++++++..
T Consensus 94 ~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~ 149 (376)
T TIGR01747 94 QATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMN 149 (376)
T ss_pred CCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC
Confidence 34456667777778888888899988777666666677778888999999999875
No 335
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=36.47 E-value=1.3e+02 Score=23.40 Aligned_cols=47 Identities=11% Similarity=-0.032 Sum_probs=32.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHH
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGA 70 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~ 70 (305)
+.-+||+|+.+ .+.++|..+.+. +...+.+.+...++...++..+|-
T Consensus 14 ~~~~s~~~i~~-~i~~la~~i~~~-~~~~~~viV~i~~gg~~~A~~La~ 60 (181)
T PRK09162 14 DCLVSAAEVEA-AIDRMADEITAD-LADENPLVLCVMGGGLVFTGQLLP 60 (181)
T ss_pred cEeecHHHHHH-HHHHHHHHHHHH-cCCCCeEEEEECCCcHHHHHHHHH
Confidence 45689999999 599999999875 222223555566666666666654
No 336
>PRK12414 putative aminotransferase; Provisional
Probab=36.35 E-value=2.3e+02 Score=24.94 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHHHHHHHc-CCC--CCCeEEEEecCChhH-HHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 37 GLAKAFLKL-GLE--RYHSVCIIGFNAPEW-FYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 37 ~la~~L~~~-g~~--~gd~V~i~~~n~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.++.++.+. |+. +.+.|.+. +++.+. ..++.++..-|-.++..+|.+.. ....++..+.+.+.+
T Consensus 74 ~ia~~l~~~~g~~~~~~~~i~it-~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v 141 (384)
T PRK12414 74 ALAEKTERLYGARYDPASEVTVI-ASASEGLYAAISALVHPGDEVIYFEPSFDS--YAPIVRLQGATPVAI 141 (384)
T ss_pred HHHHHHHHHhCCCCCCCCcEEEE-CChHHHHHHHHHHhcCCCCEEEEeCCCccc--hHHHHHHcCCEEEEE
Confidence 355555443 543 23344433 233222 23333444455555555555532 233344445555444
No 337
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=36.24 E-value=1.3e+02 Score=22.73 Aligned_cols=48 Identities=13% Similarity=-0.028 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
-+||.|+.++ ++++|..+.+.| +-|.|.-++..+.-+...+.-.+..+
T Consensus 9 ~is~~~i~~~-i~~la~~I~~~~--~~d~vvgv~~GG~~fa~~L~~~L~~~ 56 (156)
T PRK09177 9 PVSWDQLHRD-ARALAWRLLPAG--QWKGIIAVTRGGLVPAAILARELGIR 56 (156)
T ss_pred EcCHHHHHHH-HHHHHHHHHhhC--CCCEEEEEecCCeehHHHHHHHcCCC
Confidence 4899999995 999999998775 33566556666655554444444433
No 338
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=35.97 E-value=2e+02 Score=23.38 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=44.9
Q ss_pred hcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 11 RYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 11 ~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
..||..+++- .+...+|.++.+ .+..+-..|.+.|+.. -+-..+..+.. +++||.+..+-++.
T Consensus 96 e~PD~lvfDLDP~~~~~f~~v~~-~A~~~r~~L~~lgL~~--~~KTSG~kGlH-------------V~vPl~~~~~~~~~ 159 (227)
T cd04862 96 ERPDRIVFDLDPGPGVPWKAVVE-AALLVRELLDELGLES--FVKTSGGKGLH-------------VVVPLAPRAGWDEV 159 (227)
T ss_pred CCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCcc--ceEccCCCeEE-------------EEEEcCCCCCHHHH
Confidence 4688888875 456799999999 7998888888999764 12223333332 67888888875554
Q ss_pred H
Q psy2835 90 L 90 (305)
Q Consensus 90 ~ 90 (305)
.
T Consensus 160 r 160 (227)
T cd04862 160 K 160 (227)
T ss_pred H
Confidence 3
No 339
>PRK07409 threonine synthase; Validated
Probab=35.81 E-value=1.5e+02 Score=25.90 Aligned_cols=53 Identities=17% Similarity=-0.023 Sum_probs=37.3
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.++|...|..+..+-|.. ...+....++..++++++++..
T Consensus 81 iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~ 134 (353)
T PRK07409 81 VICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGN 134 (353)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCC
Confidence 3445556666777888888998765554543 3455566778899999999875
No 340
>PRK06450 threonine synthase; Validated
Probab=35.70 E-value=1.6e+02 Score=25.57 Aligned_cols=77 Identities=13% Similarity=0.000 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+-||++=.. ......+.+.|. .-.+....+..-..+.+.+...|.....+=|...+......++..+++++.+
T Consensus 77 TGSfKDRga---~~~i~~a~~~g~----~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v 149 (338)
T PRK06450 77 TGSYKDRGS---VTLISYLAEKGI----KQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRV 149 (338)
T ss_pred cCCCHHHHH---HHHHHHHHHcCC----CEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence 456665443 233344555553 2334444455556666667777776655555555566667789999999999
Q ss_pred eChH
Q psy2835 104 EDDK 107 (305)
Q Consensus 104 ~~~~ 107 (305)
+...
T Consensus 150 ~~~~ 153 (338)
T PRK06450 150 RGSR 153 (338)
T ss_pred CCCH
Confidence 8763
No 341
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=35.61 E-value=3.9e+02 Score=25.32 Aligned_cols=103 Identities=11% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCCceeEEEec--cCCCCCCcceEechhHHHHHHHHHHHhhc--cCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYT--SGTEGASKPVMLSHDNITFNAACIIQYFK--LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~T--SGtTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++... ++..|. ...+|++.+...+..+...+. + .++|++...++-+. .++..+++++..|+.++.
T Consensus 34 ~~~~~a~~~~~~~~~~~~~--~~~~Ty~el~~~v~~lA~~L~~~~-~~gd~V~i~~~n~~--e~~~~~lA~~~~G~v~vp 108 (631)
T PRK07769 34 RGDKLAYRFLDFSTERDGV--ARDLTWSQFGARNRAVGARLQQVT-KPGDRVAILAPQNL--DYLIAFFGALYAGRIAVP 108 (631)
T ss_pred CCCCeEEEEeccCCCCCCc--eeEeeHHHHHHHHHHHHHHHHHhc-CCCCEEEEEcCCCh--HHHHHHHHHHHcCCEEEe
Confidence 45677765432 112222 346899999887776655442 4 78899888887765 334447899999998875
Q ss_pred e-CCcc--chhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 A-DKNA--LKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~-~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
. +... .++.+...++..++..+...+.....+
T Consensus 109 l~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 143 (631)
T PRK07769 109 LFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGV 143 (631)
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHH
Confidence 5 2222 135688889999999999887765544
No 342
>PRK08638 threonine dehydratase; Validated
Probab=35.54 E-value=2.4e+02 Score=24.50 Aligned_cols=53 Identities=9% Similarity=0.020 Sum_probs=41.9
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.++|...|..+..+-|..........++..+++++++++.
T Consensus 78 vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 130 (333)
T PRK08638 78 VVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN 130 (333)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcC
Confidence 34455567777788888899988877777766677788999999999999765
No 343
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=35.51 E-value=1.3e+02 Score=21.10 Aligned_cols=41 Identities=15% Similarity=-0.016 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecC-ChhHHHHHHHHHHcCCe
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFN-APEWFYSDLGAIYAGGF 76 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G~~ 76 (305)
+.+.+.+.+.|+.+.+.|++++.. +.....+.+.+...|..
T Consensus 65 ~~~~~~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 65 EEFAELLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHE 106 (122)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCC
Confidence 345556677788888899999988 46666666777777854
No 344
>PF07538 ChW: Clostridial hydrophobic W; InterPro: IPR006637 This hydrophobic repeat is found in a number of Chlostridium proteins. It contains a conserved tryptophan residue.
Probab=35.51 E-value=24 Score=19.19 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=8.6
Q ss_pred ccCCCCCCcce
Q psy2835 173 TSGTEGASKPV 183 (305)
Q Consensus 173 TSGtTG~pK~v 183 (305)
++||+|..|.+
T Consensus 16 ~aGt~G~~~rl 26 (36)
T PF07538_consen 16 TAGTTGQGLRL 26 (36)
T ss_pred ecccCCCCcEE
Confidence 47999988765
No 345
>PRK07048 serine/threonine dehydratase; Validated
Probab=35.47 E-value=2e+02 Score=24.65 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=41.9
Q ss_pred EEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+....+..-..+.++|...|..+..+=|...+++....++..++++++++..
T Consensus 76 v~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~ 127 (321)
T PRK07048 76 VTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY 127 (321)
T ss_pred EEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 4445677788888889999988777766666677888999999999999864
No 346
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=35.43 E-value=2.5e+02 Score=25.02 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.9
Q ss_pred HHHHHH
Q psy2835 38 LAKAFL 43 (305)
Q Consensus 38 la~~L~ 43 (305)
+|+++.
T Consensus 84 ia~~~~ 89 (412)
T PTZ00433 84 VATYWR 89 (412)
T ss_pred HHHHHH
Confidence 444444
No 347
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=35.22 E-value=1.9e+02 Score=24.77 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=36.3
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+...++++|++|+|...-..-...+. .+...|+.++.+..+ ++-..++++.+++.++.
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~-~a~~~G~~vi~~~~~---~~~~~~a~~~Ga~~vi~ 215 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQ-VALAQGATVHVMTRG---AAARRLALALGAASAGG 215 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHH-HHHHCCCeEEEEeCC---hHHHHHHHHhCCceecc
Confidence 34567899999999987444433333 344567765554433 22346678888887764
No 348
>PLN02368 alanine transaminase
Probab=35.19 E-value=2.5e+02 Score=25.19 Aligned_cols=65 Identities=8% Similarity=-0.085 Sum_probs=29.4
Q ss_pred HHHHHHHHHHc-CC--CCCCeEEEEecCChhHHHHHH-HHH-HcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 35 AGGLAKAFLKL-GL--ERYHSVCIIGFNAPEWFYSDL-GAI-YAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 35 ~~~la~~L~~~-g~--~~gd~V~i~~~n~~~~~~~~~-a~~-~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
-+.+|+++.+. |+ .+. .|.+ .+-+.+.+...+ ++. .-|-.++.-+|.++.-. ..++..+.+++-+
T Consensus 113 R~aia~~~~~~~g~~~~~~-~I~i-t~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~--~~~~~~g~~~v~v 182 (407)
T PLN02368 113 RKEVAEFIERRDGYPSDPE-LIFL-TDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS--ATISLLGGTLVPY 182 (407)
T ss_pred HHHHHHHHHHhcCCCCChh-hEEE-cccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH--HHHHHcCCEEEEE
Confidence 33466666543 63 333 3332 222333333333 333 24655555566666332 3344455555544
No 349
>PRK07591 threonine synthase; Validated
Probab=35.16 E-value=2e+02 Score=25.85 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+-||++-.. .. ......+.|. +.| +....+..-..+.++|...|..+..+=|..........++..+++++.+
T Consensus 117 tGSfKdRga--~~-~v~~A~~~g~---~~v-v~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v 189 (421)
T PRK07591 117 THSFKDRVV--SV-ALTAARELGF---TTV-ACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAV 189 (421)
T ss_pred ccChHHHHH--HH-HHHHHHHcCC---CEE-EEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence 455665432 22 2233445553 345 4556677777777888888977766665555555667789999999999
Q ss_pred eCh
Q psy2835 104 EDD 106 (305)
Q Consensus 104 ~~~ 106 (305)
+..
T Consensus 190 ~g~ 192 (421)
T PRK07591 190 DGN 192 (421)
T ss_pred CCC
Confidence 875
No 350
>PRK08329 threonine synthase; Validated
Probab=35.02 E-value=1.9e+02 Score=25.17 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=48.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+-||++=. +........+.|. +.|+. ...+..-..+.+++...|..+..+=|...+..-...++..+++++++
T Consensus 84 tGSfKdRg---a~~~i~~a~~~g~---~~vv~-aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v 156 (347)
T PRK08329 84 TGSFKDRG---TYVTVAKLKEEGI---NEVVI-DSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFV 156 (347)
T ss_pred CcCCHHHH---HHHHHHHHHHcCC---CEEEE-ECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEE
Confidence 44555532 3334445556664 34444 33455555666666777877666666556666778889999999999
Q ss_pred eCh
Q psy2835 104 EDD 106 (305)
Q Consensus 104 ~~~ 106 (305)
+.+
T Consensus 157 ~~~ 159 (347)
T PRK08329 157 EGD 159 (347)
T ss_pred CCC
Confidence 865
No 351
>PLN02231 alanine transaminase
Probab=34.81 E-value=2.6e+02 Score=26.18 Aligned_cols=12 Identities=8% Similarity=-0.233 Sum_probs=6.9
Q ss_pred CCHHHHHHHHhh
Q psy2835 84 NSPEACLHCLVT 95 (305)
Q Consensus 84 ~~~~~~~~~l~~ 95 (305)
.+.+++...++.
T Consensus 253 ~d~~~Le~~l~~ 264 (534)
T PLN02231 253 LEISELKKQLED 264 (534)
T ss_pred CCHHHHHHHHHH
Confidence 355666666654
No 352
>PRK09082 methionine aminotransferase; Validated
Probab=34.81 E-value=2.5e+02 Score=24.65 Aligned_cols=17 Identities=0% Similarity=-0.072 Sum_probs=9.3
Q ss_pred cceEechhHHHHHHHHH
Q psy2835 181 KPVMLSHDNITFNAACI 197 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~~ 197 (305)
=|.++....++..+...
T Consensus 245 iG~iv~~~~l~~~~~~~ 261 (386)
T PRK09082 245 VGYCVAPAALSAEFRKV 261 (386)
T ss_pred hhhhhCCHHHHHHHHHH
Confidence 35556666665555443
No 353
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=34.77 E-value=2.1e+02 Score=24.64 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+...++++|++|+|+.. +.--..+...+...|+.++.++. +.+.+ ..++..+++.++..
T Consensus 159 ~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~--~~~~~-~~~~~~Ga~~~i~~ 217 (349)
T TIGR03201 159 AVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDI--DPEKL-EMMKGFGADLTLNP 217 (349)
T ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcC--CHHHH-HHHHHhCCceEecC
Confidence 34567899999999988 44444444444455776555433 33444 34566787776653
No 354
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=34.67 E-value=2.5e+02 Score=23.24 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=44.6
Q ss_pred hcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 11 RYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 11 ~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
..||..+++- .+...+|.++.+ .+..+-..|.+.|+..- +-..+..+. -+++|+.+..+-++.
T Consensus 112 ~~PD~lvfDLDP~~~~~f~~v~~-~A~~~r~~L~~lgL~~f--~KTSG~kGl-------------HV~vPl~~~~~~~~~ 175 (245)
T TIGR02778 112 EKPDRIVFDLDPGPGVAWKLVVE-AAQLIRELLDELGLESF--VKTSGGKGL-------------HVYVPLRPTLSWDEV 175 (245)
T ss_pred CCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCccc--eEccCCCeE-------------EEEEECCCCCCHHHH
Confidence 4678888875 456689999999 79999889999998641 222223232 267888888876554
Q ss_pred H
Q psy2835 90 L 90 (305)
Q Consensus 90 ~ 90 (305)
.
T Consensus 176 r 176 (245)
T TIGR02778 176 K 176 (245)
T ss_pred H
Confidence 4
No 355
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=34.26 E-value=75 Score=20.43 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=23.4
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHcCCC
Q psy2835 20 FNAPEWFYSDLGAIYAGGLAKAFLKLGLE 48 (305)
Q Consensus 20 ~~~~~~Ty~el~~~~~~~la~~L~~~g~~ 48 (305)
+.++.+|.+++.+ +++++.+.+++.|.-
T Consensus 26 ~~g~~l~~~~l~~-~~~~l~~~y~~~GY~ 53 (76)
T PF08479_consen 26 YIGRCLTLADLQQ-LADALTNYYREKGYI 53 (76)
T ss_dssp GTTSBB-HHHHHH-HHHHHHHHHHHTT-T
T ss_pred hcCCCcCHHHHHH-HHHHHHHHHHHcCce
Confidence 3678999999999 799999999999965
No 356
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=34.26 E-value=3.1e+02 Score=25.01 Aligned_cols=44 Identities=14% Similarity=-0.181 Sum_probs=29.4
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-------CCCHHHHHHHHhh
Q psy2835 49 RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-------TNSPEACLHCLVT 95 (305)
Q Consensus 49 ~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-------~~~~~~~~~~l~~ 95 (305)
+|+.|+ +.+++ +..+.-|+..+|+.++.+++ ..+++.++..++.
T Consensus 150 ~gd~VI-~p~~t--h~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~ 200 (444)
T TIGR03531 150 KAKYVI-WPRID--QKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE 200 (444)
T ss_pred CCCEEE-EECcC--hHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence 355443 33333 77777888888888887773 3467778887764
No 357
>PLN02409 serine--glyoxylate aminotransaminase
Probab=33.98 E-value=3.4e+02 Score=24.11 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=17.0
Q ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 69 GAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 69 a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.++.-|-.++..++.........+++..+.+++.++
T Consensus 79 ~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~ 114 (401)
T PLN02409 79 NTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVE 114 (401)
T ss_pred hcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEE
Confidence 333445444444444433333445555555555553
No 358
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=33.96 E-value=2e+02 Score=23.68 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=9.4
Q ss_pred CceeEEEeccCCC
Q psy2835 165 NECCTLVYTSGTE 177 (305)
Q Consensus 165 ~~~~~i~~TSGtT 177 (305)
.++-.++|||+++
T Consensus 181 ~~~d~v~ftS~~~ 193 (255)
T PRK05752 181 ERLNGLVVSSGQG 193 (255)
T ss_pred CCCCEEEECCHHH
Confidence 4567788888764
No 359
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.96 E-value=3.9e+02 Score=24.80 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=42.0
Q ss_pred EEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+....+..-..+.++|...|+.+..+=|...+......++..+++++++...
T Consensus 69 V~aSaGNha~~vA~aa~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~ 120 (499)
T TIGR01124 69 IAASAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN 120 (499)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcC
Confidence 4456677777888889999988887777777777778899999999999765
No 360
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=33.94 E-value=3.1e+02 Score=24.10 Aligned_cols=21 Identities=14% Similarity=-0.192 Sum_probs=12.0
Q ss_pred CCCCCCcceEechhHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAA 195 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~ 195 (305)
|-+|.--|.++....++..+.
T Consensus 243 glaGlRiGy~~~~~~~i~~l~ 263 (380)
T PLN03026 243 GLAGLRVGYGAFPLSIIEYLW 263 (380)
T ss_pred cCccccceeeecCHHHHHHHH
Confidence 445555566666666655443
No 361
>cd07050 BMC_EutL_repeat2 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 2. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 2 (the second BMC domain of EutL).
Probab=33.73 E-value=87 Score=20.67 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 39 AKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 39 a~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
..+|.+ .|+++|+-++.+...-.|..+.+=+++++.-+-+
T Consensus 3 GsYls~~agi~eGe~lAYLIapPlEa~y~lDaALKAAdV~~ 43 (87)
T cd07050 3 GSYLSKTAGIAEGEALAYLIAPPLEAMYGLDAALKAADVEL 43 (87)
T ss_pred chhhHHhcCCCCCCeeeeeecCcHHHHHHHHHHHHhhceee
Confidence 345654 4999999999999889999999999998875443
No 362
>PRK06108 aspartate aminotransferase; Provisional
Probab=33.65 E-value=3.2e+02 Score=23.78 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=15.2
Q ss_pred CCCCCCcceEechhHHHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAACI 197 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~~~ 197 (305)
|.+|..=|..+..+.++..+...
T Consensus 235 g~~G~RiG~~~~~~~~~~~~~~~ 257 (382)
T PRK06108 235 AMTGWRLGWLVAPPALGQVLEKL 257 (382)
T ss_pred cCcccceeeeeCCHHHHHHHHHH
Confidence 34455568888888777765543
No 363
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=33.64 E-value=3.2e+02 Score=23.80 Aligned_cols=53 Identities=9% Similarity=0.004 Sum_probs=25.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC----CCCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT----TNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.++||.|++..|.-. .....+...|+.+.+++. ....+++...++. ++++++.
T Consensus 109 ~~~gd~vli~~P~y~---~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~-~~~~v~l 165 (371)
T PRK05166 109 LRPGDRVVTLYPSFP---LHEDYPTMMGARVERVTVTPDLGFDLDALCAAVAR-APRMLMF 165 (371)
T ss_pred cCCCCEEEEcCCChH---HHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc-CCCEEEE
Confidence 356776665433222 222333445555544432 2345666665543 4455554
No 364
>PRK06290 aspartate aminotransferase; Provisional
Probab=33.11 E-value=2.6e+02 Score=24.94 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=31.5
Q ss_pred HHHHHHHHHHc-CC---CCCCeEEEEecCChhHH-HHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 35 AGGLAKAFLKL-GL---ERYHSVCIIGFNAPEWF-YSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 35 ~~~la~~L~~~-g~---~~gd~V~i~~~n~~~~~-~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
-+.+|.++.+. |+ .+.+.|.+- +.+.+.+ .++.++..-|-.++.-+|.++. ....++..+.+++-++
T Consensus 87 r~aia~~~~~~~g~~~~~~~~~I~it-~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~--~~~~~~~~g~~v~~v~ 158 (410)
T PRK06290 87 KEAAARYMEKVFGVKDIDPVTEVIHS-IGSKPALAMLPSCFINPGDVTLMTVPGYPV--TGTHTKYYGGEVYNLP 158 (410)
T ss_pred HHHHHHHHHHHcCCCcCCCcceEEEc-cCHHHHHHHHHHHhCCCCCEEEEeCCCCcc--HHHHHHHcCCEEEEEe
Confidence 34466676543 53 333334432 2233333 2333344556666666666653 2234445566655543
No 365
>PRK06207 aspartate aminotransferase; Provisional
Probab=32.99 E-value=2.3e+02 Score=25.17 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHHHHHHHc-CC--CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 36 GGLAKAFLKL-GL--ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 36 ~~la~~L~~~-g~--~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+.+++++.+. |+ .+.+.|.+....+.-...++.++..-|-.++..+|.+.. ...+++..+.+++-++
T Consensus 85 ~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~--~~~~~~~~g~~v~~v~ 154 (405)
T PRK06207 85 ELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFA--NRKLVEFFEGEMVPVQ 154 (405)
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh--HHHHHHHcCCEEEEEe
Confidence 3466666553 54 332445444332323333344444556666666777653 3455666666666543
No 366
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=32.97 E-value=94 Score=23.00 Aligned_cols=38 Identities=5% Similarity=-0.090 Sum_probs=28.2
Q ss_pred eEEEE---ecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH
Q psy2835 52 SVCII---GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC 89 (305)
Q Consensus 52 ~V~i~---~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~ 89 (305)
+|+++ -...-......-.+...|..++|+||.+..+++
T Consensus 18 ~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~ei 58 (140)
T COG1832 18 TIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEI 58 (140)
T ss_pred eEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHh
Confidence 45555 333456777777888999999999998876654
No 367
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=32.95 E-value=87 Score=20.78 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=22.0
Q ss_pred ccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChh
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPE 62 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~ 62 (305)
.-|=.+=.+ .-..++..|.+ .|+.+.|+..++..|..+
T Consensus 39 gRs~e~K~~-ly~~l~~~L~~~~gi~p~Dv~I~l~e~~~e 77 (82)
T PF14552_consen 39 GRSTEQKKA-LYRALAERLAEKLGIRPEDVMIVLVENPRE 77 (82)
T ss_dssp ---HHHHHH-HHHHHHHHHHHHH---GGGEEEEEEEE-GG
T ss_pred CCCHHHHHH-HHHHHHHHHHHHcCCCHHHEEEEEEECCcc
Confidence 344444445 56668888875 799999998888877654
No 368
>PRK08197 threonine synthase; Validated
Probab=32.88 E-value=1.8e+02 Score=25.92 Aligned_cols=53 Identities=17% Similarity=-0.008 Sum_probs=37.2
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.+++...|..+..+=|....+.....++..+++++.++..
T Consensus 130 vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~ 182 (394)
T PRK08197 130 LAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGL 182 (394)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33344555666666677777876666655555556678899999999999865
No 369
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=32.86 E-value=3.5e+02 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=42.9
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.++|...|..+..+=|...+.+....++..++++++++..
T Consensus 51 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 103 (380)
T TIGR01127 51 VVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGDD 103 (380)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECCC
Confidence 45556677777888889999988887777777778888899999999999764
No 370
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=32.60 E-value=73 Score=25.64 Aligned_cols=30 Identities=20% Similarity=0.021 Sum_probs=22.4
Q ss_pred HHHHHcCCeEEecCCCCCHHHHHHHHhhCC
Q psy2835 68 LGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 68 ~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 97 (305)
=++..+|+.+++|++..+.+++..+++..+
T Consensus 31 ~~i~~aG~~pv~ip~~~~~~~~~~~l~~id 60 (217)
T PF07722_consen 31 KAIEAAGGRPVPIPYDADDEELDELLDRID 60 (217)
T ss_dssp HHHHHTT-EEEEE-SS--HHHHHHHHHCSS
T ss_pred HHHHHcCCEEEEEccCCCHHHHHHHHhhcC
Confidence 356788999999999999999999999776
No 371
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=32.59 E-value=3e+02 Score=25.46 Aligned_cols=11 Identities=18% Similarity=0.030 Sum_probs=6.2
Q ss_pred CCCCCCcceEe
Q psy2835 175 GTEGASKPVML 185 (305)
Q Consensus 175 GtTG~pK~v~~ 185 (305)
|.+|.==|-++
T Consensus 356 ~~~G~RiG~~i 366 (517)
T PRK13355 356 MIAGYRIGWMI 366 (517)
T ss_pred cCcccceEEEE
Confidence 55665555555
No 372
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=32.56 E-value=1.4e+02 Score=19.43 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+...+...+..+++.|.+++.++.....+...+...|..
T Consensus 44 ~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 44 FEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred HHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 344555678888999999998887777777777777765
No 373
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=32.54 E-value=1.9e+02 Score=24.78 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=37.5
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.+++...|..+..+-|.. ...+-...++..+++++.++..
T Consensus 73 ~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~ 127 (328)
T TIGR00260 73 TVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGN 127 (328)
T ss_pred EEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCC
Confidence 33445555555555578888888777776664 3456666677899999999875
No 374
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=32.29 E-value=3.1e+02 Score=24.50 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=5.8
Q ss_pred HHHhhCCceEEEE
Q psy2835 91 HCLVTSDANICVV 103 (305)
Q Consensus 91 ~~l~~~~~~~v~~ 103 (305)
.+.+..+.+++.+
T Consensus 141 ~~a~~~g~~v~~v 153 (424)
T PLN02855 141 LVAQKTGAVLKFV 153 (424)
T ss_pred HHHHHcCCEEEEE
Confidence 3334445554444
No 375
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.22 E-value=1.6e+02 Score=21.72 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 65 YSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 65 ~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
++...+-..|.-++-+-...+++++.....+.+|++|..+.
T Consensus 22 iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 22 ILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 34444557899999999999999999999999999999875
No 376
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=32.19 E-value=1.9e+02 Score=25.62 Aligned_cols=17 Identities=6% Similarity=-0.048 Sum_probs=8.9
Q ss_pred HHHHcCCeEEecCCCCC
Q psy2835 69 GAIYAGGFAAGMYTTNS 85 (305)
Q Consensus 69 a~~~~G~~~v~i~~~~~ 85 (305)
+.+..|-.++..++.++
T Consensus 86 ~l~~~GD~Vl~~~~~y~ 102 (386)
T PRK08045 86 VFLKPGDLLVAPHDCYG 102 (386)
T ss_pred HHcCCCCEEEEcCCCcH
Confidence 34444555555555554
No 377
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=32.14 E-value=2.7e+02 Score=24.98 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=45.1
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
-.+....+..-..+.+++...|..+...=|...+.+....++..+++++.++..
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~ 189 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETD 189 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCC
Confidence 456667777888888899999988887777777788888999999999999865
No 378
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=31.75 E-value=1.5e+02 Score=21.68 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHH-cCCCCCCeEEEEec--CChhHHHHHHHHHHcCCeEEec
Q psy2835 37 GLAKAFLK-LGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 37 ~la~~L~~-~g~~~gd~V~i~~~--n~~~~~~~~~a~~~~G~~~v~i 80 (305)
.++..+.+ ..+++||.+.+++. |++..+-+...+-..|+.++.|
T Consensus 90 ~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 90 GFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp THHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 34444443 46899999888755 4566777778888889888765
No 379
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=31.62 E-value=2.1e+02 Score=25.08 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC------CCHHHHHHHHhh------CCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT------NSPEACLHCLVT------SDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~------~~~~~~~~~l~~------~~~~~v~~~ 104 (305)
++||.|.+..+++.. .+.++-..|+.+..++.. .+.+++...++. .++++|+++
T Consensus 88 ~~gd~Vl~~~~~h~s---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~ 153 (370)
T TIGR02539 88 KEGDWVVLDGLAHYT---SYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLT 153 (370)
T ss_pred CCCCEEEECCcccHH---HHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEE
Confidence 577877664333322 234566778777766643 367777777753 255666653
No 380
>PRK08912 hypothetical protein; Provisional
Probab=31.43 E-value=2.3e+02 Score=24.92 Aligned_cols=17 Identities=6% Similarity=-0.207 Sum_probs=10.9
Q ss_pred cceEechhHHHHHHHHH
Q psy2835 181 KPVMLSHDNITFNAACI 197 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~~ 197 (305)
-|.++....++..+...
T Consensus 241 iG~~~~~~~~~~~l~~~ 257 (387)
T PRK08912 241 VGFVCAAPPLLRVLAKA 257 (387)
T ss_pred eEEEecCHHHHHHHHHH
Confidence 47777777776655443
No 381
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.37 E-value=3.7e+02 Score=23.78 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCeEEecCCCCCHHH--HHHHHhhCCceEEEEeC
Q psy2835 65 YSDLGAIYAGGFAAGMYTTNSPEA--CLHCLVTSDANICVVED 105 (305)
Q Consensus 65 ~~~~a~~~~G~~~v~i~~~~~~~~--~~~~l~~~~~~~v~~~~ 105 (305)
.++.+++..|-.++..++.+.... +...++..+.++...+.
T Consensus 80 ~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 80 NSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred HHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 344455566666655555554322 12334555666555543
No 382
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=31.19 E-value=2.9e+02 Score=22.52 Aligned_cols=64 Identities=9% Similarity=0.002 Sum_probs=43.6
Q ss_pred hcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHH
Q psy2835 11 RYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 90 (305)
Q Consensus 11 ~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~ 90 (305)
.+||..+++-+=...+|.++.+ .+..+-..|.+.|+.. -+-..+..+. -+++||.+..+-++..
T Consensus 98 e~PD~~vfDLDP~~~~f~~v~~-~A~~~r~~L~~~gL~~--f~KTSG~kGl-------------Hv~vPl~~~~~~~~~r 161 (228)
T cd04864 98 EHPDLMVFDLDPSADDIEAVRT-AALAVRELLDELGLPS--FVKTTGSRGF-------------HVVVPLDGRGDFDDVR 161 (228)
T ss_pred CCCCEEEEecCCCCCCHHHHHH-HHHHHHHHHHHcCCcc--ceEccCCCeE-------------EEEEEcCCCCCHHHHH
Confidence 5688888875433559999999 7888888888988763 1222233333 2678899888755543
No 383
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.03 E-value=3.2e+02 Score=24.71 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.3
Q ss_pred HHHhhCCceEEEEe
Q psy2835 91 HCLVTSDANICVVE 104 (305)
Q Consensus 91 ~~l~~~~~~~v~~~ 104 (305)
..++..+.++++++
T Consensus 122 ~~~~~~Gv~v~~vd 135 (431)
T PRK08248 122 HTLPKLGITVKFVD 135 (431)
T ss_pred HHHHhCCEEEEEEC
Confidence 33444444444444
No 384
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=31.03 E-value=1.5e+02 Score=24.91 Aligned_cols=50 Identities=10% Similarity=-0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhH-HHHHHHHHHcCCe-EEecCCCC
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEW-FYSDLGAIYAGGF-AAGMYTTN 84 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~-~~~~~a~~~~G~~-~v~i~~~~ 84 (305)
.+.+...+.+.|+.+++.|.+++.....+ ..+++.+-..|.. +..++..+
T Consensus 72 ~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~ 123 (281)
T PRK11493 72 PETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGL 123 (281)
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCH
Confidence 45688889999999999999998875533 3455667777865 44555444
No 385
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=30.84 E-value=1.8e+02 Score=24.47 Aligned_cols=56 Identities=13% Similarity=-0.017 Sum_probs=44.8
Q ss_pred CCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 50 YHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 50 gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
++.| +....+..-..+.++|...|..+..+-|....+.....++..+++++.+...
T Consensus 56 ~~~v-v~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~ 111 (306)
T PF00291_consen 56 GRTV-VGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD 111 (306)
T ss_dssp TSEE-EEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST
T ss_pred ccee-eeeccCCceehhhhhhhhccccceeeeccccccccccceeeecceEEEcccc
Confidence 3455 6677777777788888888988888777777778889999999999988763
No 386
>PRK06352 threonine synthase; Validated
Probab=30.70 E-value=2.1e+02 Score=25.01 Aligned_cols=65 Identities=15% Similarity=-0.028 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
......+.|. +. .+....+..-..+.++|...|..+..+-|.. ...+....++..++++++++..
T Consensus 66 ~i~~a~~~g~---~~-vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~ 131 (351)
T PRK06352 66 AVAKAKEEGA---EA-VICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN 131 (351)
T ss_pred HHHHHHHCCC---CE-EEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC
Confidence 3333445553 23 3333455556667778888898877777664 3556666779999999999875
No 387
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=30.60 E-value=2.5e+02 Score=23.83 Aligned_cols=59 Identities=8% Similarity=-0.017 Sum_probs=37.3
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
...++++|++|+|......-..+..+|....|+.++.+..+. +-...++..+++.++-.
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~---~~~~~~~~~g~~~v~~~ 214 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDIND---DKLALAKEVGADLTINS 214 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCh---HHHHHHHHcCCcEEecc
Confidence 445789999999998545555555666654587766664332 23334466677766654
No 388
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.47 E-value=3.8e+02 Score=23.76 Aligned_cols=52 Identities=6% Similarity=-0.035 Sum_probs=27.9
Q ss_pred EEecCChhHHH-HHHHHHHcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFY-SDLGAIYAGGFAAGMYTTNSP--EACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~-~~~a~~~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~~~ 106 (305)
++..++...+. ++.+++..|-.++.-++.+.. ..+...+...+.++++++..
T Consensus 80 v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~ 134 (390)
T PRK08133 80 VATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT 134 (390)
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC
Confidence 34455544433 344555566655544444432 22445667778888777653
No 389
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=30.44 E-value=2.8e+02 Score=25.43 Aligned_cols=51 Identities=6% Similarity=-0.019 Sum_probs=33.0
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec--------------CCCCCHHHHHHHHhhCC
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM--------------YTTNSPEACLHCLVTSD 97 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i--------------~~~~~~~~~~~~l~~~~ 97 (305)
...++++||.| +....+....-.+...|++++=+ +...+.+.++..++..+
T Consensus 110 ~~l~v~pGd~V----p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~ 174 (460)
T PRK13237 110 SRIAIKPGQYV----PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG 174 (460)
T ss_pred HHhCCCCcCEE----CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhcccc
Confidence 35688999964 33333333333378888887733 44578999999887643
No 390
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=30.31 E-value=3.3e+02 Score=23.95 Aligned_cols=58 Identities=7% Similarity=-0.051 Sum_probs=27.3
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHH-----HcCCeEEecCCCCCHH--HHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAI-----YAGGFAAGMYTTNSPE--ACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~-----~~G~~~v~i~~~~~~~--~~~~~l~~~~~~~v~~~ 104 (305)
|..+.+.|++ .++..+.+...+..+ .-|-.++..++..... ....+.+..+.+++..+
T Consensus 74 g~~~~~~i~~-t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~ 138 (398)
T TIGR03392 74 NAPDAENIVW-TRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLP 138 (398)
T ss_pred CCCCCCeEEE-eCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEe
Confidence 4432334443 344444444333332 3355555555554432 23445566667666654
No 391
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=30.29 E-value=4.1e+02 Score=23.95 Aligned_cols=78 Identities=6% Similarity=-0.000 Sum_probs=55.2
Q ss_pred EechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEE
Q psy2835 184 MLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVF 260 (305)
Q Consensus 184 ~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~ 260 (305)
-+..+.+...+......+ +....+++++...+-+. .++..+++++..|+.++..+....+..+...+++.++..+
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~--e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~ 96 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPL--QFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQI 96 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCH--HHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEE
Confidence 346677777776655554 33135777877766542 2334488999999999998877667888899999999888
Q ss_pred Eec
Q psy2835 261 LAV 263 (305)
Q Consensus 261 ~~~ 263 (305)
...
T Consensus 97 i~~ 99 (452)
T PRK07445 97 WGL 99 (452)
T ss_pred Eec
Confidence 764
No 392
>KOG0733|consensus
Probab=30.26 E-value=1.2e+02 Score=28.81 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=59.2
Q ss_pred hhHHHHHHHhcccceeeec-----cCCccchHHHHHHHHHHHHHHHHHcCCC--CCCeEEEE-ecCChhHHHHHHHHHHc
Q psy2835 2 KAFLKLGLERYHSVCIIGF-----NAPEWFYSDLGAIYAGGLAKAFLKLGLE--RYHSVCII-GFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 2 ~~~l~~~~~~~~~~~~~~~-----~~~~~Ty~el~~~~~~~la~~L~~~g~~--~gd~V~i~-~~n~~~~~~~~~a~~~~ 73 (305)
+++++++....|-..+++. ..+..--+|+.+|++.++-..|...+.. .|+.|.++ ..|.++.+- -|+-++
T Consensus 272 RelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRa 349 (802)
T KOG0733|consen 272 RELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRA 349 (802)
T ss_pred HHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhcc
Confidence 5678888888887777765 3456778889888888887777777654 35666555 778888653 355566
Q ss_pred CC----eEEecCCCCCHHHHHHHH
Q psy2835 74 GG----FAAGMYTTNSPEACLHCL 93 (305)
Q Consensus 74 G~----~~v~i~~~~~~~~~~~~l 93 (305)
|. +.+.++-...-+++.+++
T Consensus 350 GRFdrEI~l~vP~e~aR~~IL~~~ 373 (802)
T KOG0733|consen 350 GRFDREICLGVPSETAREEILRII 373 (802)
T ss_pred ccccceeeecCCchHHHHHHHHHH
Confidence 64 445555555555554443
No 393
>PRK08198 threonine dehydratase; Provisional
Probab=30.25 E-value=3.1e+02 Score=24.46 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=41.0
Q ss_pred EEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+....+..-..+.++|...|..+..+=|...+.+....++..++.+++++..
T Consensus 74 v~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~ 125 (404)
T PRK08198 74 VAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV 125 (404)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC
Confidence 3445566777777889999988887777777777778899999999999754
No 394
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=29.71 E-value=1.4e+02 Score=21.39 Aligned_cols=27 Identities=7% Similarity=-0.161 Sum_probs=12.5
Q ss_pred CCeEEEEecCCh---hHHHHHHHHHHcCCe
Q psy2835 50 YHSVCIIGFNAP---EWFYSDLGAIYAGGF 76 (305)
Q Consensus 50 gd~V~i~~~n~~---~~~~~~~a~~~~G~~ 76 (305)
...|.+..+... ..+-++=.|-.+|..
T Consensus 85 ~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~ 114 (122)
T TIGR02803 85 DTTIFFRADKTVDYGDLMKVMNLLRQAGYL 114 (122)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 335666655543 223333344455553
No 395
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=29.60 E-value=3.4e+02 Score=24.61 Aligned_cols=55 Identities=9% Similarity=-0.044 Sum_probs=44.7
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~ 107 (305)
-.+....+..-..+.+++...|..+...=|...+......++..++++++++...
T Consensus 154 ~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~~ 208 (431)
T TIGR02035 154 SIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESDY 208 (431)
T ss_pred eEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCH
Confidence 4556677777788888888899888777777777788889999999999998763
No 396
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=29.58 E-value=2.3e+02 Score=24.92 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=42.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CC---HHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NS---PEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~---~~~~~~~l~~~~~~~v~~~~ 105 (305)
++++++|++.+.-+.++.++++-+...|.-++.+.-. .+ .+..+.+.+..+.+..+.+-
T Consensus 2 ~~~~~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~ 68 (360)
T PRK14665 2 MEKNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDA 68 (360)
T ss_pred CCCCCEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEec
Confidence 4678899999999999999998888888655544221 12 23356777888888877764
No 397
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=29.58 E-value=3.5e+02 Score=23.46 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=7.7
Q ss_pred ceEechhHHHHHH
Q psy2835 182 PVMLSHDNITFNA 194 (305)
Q Consensus 182 ~v~~s~~~l~~~~ 194 (305)
|+.+..+.+...+
T Consensus 209 g~~~~~~~~~~~~ 221 (373)
T cd06453 209 GVLYGKEELLEEM 221 (373)
T ss_pred EEEEEchHHhhcC
Confidence 6666666665543
No 398
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=29.50 E-value=2e+02 Score=20.00 Aligned_cols=48 Identities=6% Similarity=-0.173 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
.+.+.++.+ .+.+.+..+++.|.++|.++.....+...+...|..-+-
T Consensus 42 niP~~~l~~--------~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~ 89 (104)
T PRK10287 42 NIPLKEVKE--------RIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAE 89 (104)
T ss_pred ECCHHHHHH--------HHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEE
Confidence 455655544 233445556677999999888878788888888876543
No 399
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=29.31 E-value=1.9e+02 Score=22.72 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=26.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHH
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~ 65 (305)
-+||.|+.++ +.++|..+.+.--...+.|+-++.-+.-+..
T Consensus 11 lis~~~I~~~-i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~ 51 (189)
T PLN02238 11 LWTAEDISAR-VAELAAQIASDYAGKSPVVLGVATGAFMFLA 51 (189)
T ss_pred EcCHHHHHHH-HHHHHHHHHHHcCCCCcEEEEEccCCHHHHH
Confidence 5899999995 9999999987521123444334444444433
No 400
>smart00728 ChW Clostridial hydrophobic, with a conserved W residue, domain.
Probab=29.19 E-value=33 Score=19.95 Aligned_cols=11 Identities=27% Similarity=0.444 Sum_probs=8.5
Q ss_pred ccCCCCCCcce
Q psy2835 173 TSGTEGASKPV 183 (305)
Q Consensus 173 TSGtTG~pK~v 183 (305)
++||+|+++.+
T Consensus 17 ~aGT~G~~lri 27 (46)
T smart00728 17 IAGTVGQGLRI 27 (46)
T ss_pred EcccCCCCcee
Confidence 57999987654
No 401
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=29.15 E-value=4.4e+02 Score=23.91 Aligned_cols=84 Identities=13% Similarity=-0.025 Sum_probs=49.6
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhc-c-CCCc
Q psy2835 45 LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKA-Q-CPKL 122 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~ 122 (305)
.|+..|++++++..-+....- ++...+..+...+...+.++....|++.+|+++++........+..+.+ . ....
T Consensus 138 ~g~~~g~r~a~~~~~~~~ly~---~~~~~~~~~~~~~l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~~~~ 214 (430)
T TIGR02304 138 DGLFAKHRIAFFLRADNNLYQ---SVNNRWISLDFFDLLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELTIKP 214 (430)
T ss_pred cccccCCcEEEEEccChhHHH---HHHhccceeeecCCCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCCCCc
Confidence 478889999998433322221 1223333244444446788899999999999999988743333332222 1 1345
Q ss_pred cEEEEccCC
Q psy2835 123 KAIVQYEGK 131 (305)
Q Consensus 123 ~~~i~~~~~ 131 (305)
+.++..++.
T Consensus 215 k~ii~~~E~ 223 (430)
T TIGR02304 215 KKVISVAEV 223 (430)
T ss_pred eEEEEccCC
Confidence 666655543
No 402
>PRK07324 transaminase; Validated
Probab=29.13 E-value=2e+02 Score=25.15 Aligned_cols=21 Identities=5% Similarity=-0.056 Sum_probs=12.2
Q ss_pred CCCCcceEechhHHHHHHHHH
Q psy2835 177 EGASKPVMLSHDNITFNAACI 197 (305)
Q Consensus 177 TG~pK~v~~s~~~l~~~~~~~ 197 (305)
+|.-=|.+...+.++..+...
T Consensus 227 ~G~RiG~i~~~~~li~~~~~~ 247 (373)
T PRK07324 227 PGIRVGWIAANEEVIDILRKY 247 (373)
T ss_pred ccceeEEEecCHHHHHHHHHH
Confidence 344446666777776655543
No 403
>PLN02494 adenosylhomocysteinase
Probab=29.06 E-value=4.6e+02 Score=24.17 Aligned_cols=82 Identities=5% Similarity=-0.197 Sum_probs=57.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE--ecCCCCCHHHHHHHHhhCCce
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA--GMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v--~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.|.+-..-.-..+...+.+..--+|-+|+.++.-.++-.+.+..+...|+.+. .-||..+.++....|...+..
T Consensus 18 ~~~i~wa~~~mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~ 97 (477)
T PLN02494 18 RLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAA 97 (477)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCce
Confidence 345666555432223333344444445688999999999999999999999998654 456778888888888887777
Q ss_pred EEEE
Q psy2835 100 ICVV 103 (305)
Q Consensus 100 ~v~~ 103 (305)
+.=-
T Consensus 98 vfa~ 101 (477)
T PLN02494 98 VFAW 101 (477)
T ss_pred EEEe
Confidence 4443
No 404
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=28.93 E-value=2.9e+02 Score=21.73 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC-C-----HHHHHHHHhhCCceEEEEeCh
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-S-----PEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~-----~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+.+.+.+.++. .+ |+++.+|..+....-+ +...|..+..+++.. + .+++...++..+++++++-.-
T Consensus 17 ll~~~~~~~l~-~~-I~~vi~~~~~~~~~~~-A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~ 88 (190)
T TIGR00639 17 IIDACKEGKIP-AS-VVLVISNKPDAYGLER-AAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGF 88 (190)
T ss_pred HHHHHHcCCCC-ce-EEEEEECCccchHHHH-HHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCc
Confidence 44444444433 23 5545455445333222 356687776555432 2 467888999999999998754
No 405
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.91 E-value=2.8e+02 Score=25.18 Aligned_cols=94 Identities=10% Similarity=-0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhH-HHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHH----
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEW-FYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQL---- 109 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~-~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~---- 109 (305)
...+...+... +++||+|++........ ..+.-.+.+.|+.+..++...+.++++..++. +.++|+++.....
T Consensus 94 ~~Ai~~al~~l-l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~-~tk~V~~e~~~Np~~~v 171 (437)
T PRK05613 94 QAAETAAILNL-AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQP-NTKAFFGETFANPQADV 171 (437)
T ss_pred HHHHHHHHHHh-cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCc-cCeEEEEECCCCCCCcc
Q ss_pred HHHHHHhccCCCccEEEEccC
Q psy2835 110 EKILKVKAQCPKLKAIVQYEG 130 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~ 130 (305)
..+.++.+.+......+++|.
T Consensus 172 ~di~~I~~la~~~gi~livD~ 192 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDN 192 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEEC
No 406
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=28.90 E-value=2.1e+02 Score=20.09 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=21.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCC
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERY 50 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~g 50 (305)
.++|+++.+ .++.+|..|.+.+....
T Consensus 4 ~~~~~~~~~-~~~~la~~i~~~~~~~~ 29 (125)
T PF00156_consen 4 ILSPEQIEA-LAERLAEQIKESGFDFD 29 (125)
T ss_dssp EEBHHHHHH-HHHHHHHHHHHHTTTSS
T ss_pred EEcHHHHHH-HHHHHHHHHHHhCCCCC
Confidence 368999999 69999999999876543
No 407
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.88 E-value=3.7e+02 Score=22.94 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=39.8
Q ss_pred HHHHHc-CCCCCCeEEEEecCChhHHHHH---HHHHHcCCeE--EecCCCCCHHHHHHHHhhCC----ceEEEEeC
Q psy2835 40 KAFLKL-GLERYHSVCIIGFNAPEWFYSD---LGAIYAGGFA--AGMYTTNSPEACLHCLVTSD----ANICVVED 105 (305)
Q Consensus 40 ~~L~~~-g~~~gd~V~i~~~n~~~~~~~~---~a~~~~G~~~--v~i~~~~~~~~~~~~l~~~~----~~~v~~~~ 105 (305)
..|.+. |..|+=.+....++.....+.- =+|-..|+.+ .-++...+.+++...++..+ .+-+++.-
T Consensus 22 ~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvql 97 (293)
T PRK14185 22 AEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQL 97 (293)
T ss_pred HHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEec
Confidence 345544 7777533444444444444333 3788889888 44677778888887776553 44566653
No 408
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=28.84 E-value=2.5e+02 Score=24.55 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=44.2
Q ss_pred eEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChH
Q psy2835 52 SVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDK 107 (305)
Q Consensus 52 ~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~ 107 (305)
+|+-..-| .---+.|||...|...+..=|..++..-..-.+..++.+++.++.+
T Consensus 77 ViaaSaGN--HaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~~ 130 (347)
T COG1171 77 VIAASAGN--HAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNF 130 (347)
T ss_pred eEEecCCc--HHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCCH
Confidence 44444444 4556789999999999988899999999999999999999998874
No 409
>PRK08246 threonine dehydratase; Provisional
Probab=28.83 E-value=3.7e+02 Score=22.96 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=43.0
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 49 RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 49 ~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+++.| +....+..-..+.++|...|..+..+-|....+.....++..++++++++..
T Consensus 67 ~~~~v-v~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 123 (310)
T PRK08246 67 PAAGV-VAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE 123 (310)
T ss_pred cCCeE-EEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC
Confidence 34444 4445577777778888888887777766666677788999999999999874
No 410
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=28.67 E-value=1.6e+02 Score=25.89 Aligned_cols=54 Identities=9% Similarity=-0.061 Sum_probs=28.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhh---C--CceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVT---S--DANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~---~--~~~~v~~~ 104 (305)
+++||.|++-.+. +.....++...|+.++.++. ...+++...++. . ++++|+++
T Consensus 123 ~~~gd~vi~~~~~---~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~i~~~~~~~~~~~~v~~~ 181 (397)
T PRK06939 123 LGKEDAIISDALN---HASIIDGVRLCKAKRYRYAN-NDMADLEAQLKEAKEAGARHKLIATD 181 (397)
T ss_pred CCCCCEEEEEhhh---hHHHHHHHHhcCCceEEeCC-CCHHHHHHHHHhhhccCCCCeEEEEe
Confidence 3566665554332 22233344555666655543 355666666643 1 55666664
No 411
>PRK08960 hypothetical protein; Provisional
Probab=28.52 E-value=2.6e+02 Score=24.53 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=14.4
Q ss_pred CCCCCCcceEechhHHHHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~~~~ 198 (305)
|..|.-=|.++....++..+....
T Consensus 237 g~~GlRiG~~~~~~~~~~~~~~~~ 260 (387)
T PRK08960 237 GMTGWRLGWLVAPPAAVPELEKLA 260 (387)
T ss_pred CCcccEEEEEEcCHHHHHHHHHHH
Confidence 344544677777777776555443
No 412
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=28.51 E-value=4.4e+02 Score=23.68 Aligned_cols=73 Identities=3% Similarity=0.048 Sum_probs=37.9
Q ss_pred CCCCCeEEEEecCChhHHH----HHH-----HHHHcCCeEEecCC---CCCHHHHHHHHhhCCceEEEEeCh-----HHH
Q psy2835 47 LERYHSVCIIGFNAPEWFY----SDL-----GAIYAGGFAAGMYT---TNSPEACLHCLVTSDANICVVEDD-----KQL 109 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~----~~~-----a~~~~G~~~v~i~~---~~~~~~~~~~l~~~~~~~v~~~~~-----~~~ 109 (305)
+++||+|+-+...+--.+. .-. .-.....+..++++ ...-++++++++..+|++|+++.. ...
T Consensus 107 l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y~~~~d~ 186 (399)
T PF00464_consen 107 LKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSYPRPIDF 186 (399)
T ss_dssp T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SSTSS---H
T ss_pred HhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhccCccCH
Confidence 4578888766544321111 111 22223355566773 457889999999999999999864 234
Q ss_pred HHHHHHhccC
Q psy2835 110 EKILKVKAQC 119 (305)
Q Consensus 110 ~~~~~~~~~~ 119 (305)
+++.++..+.
T Consensus 187 ~~~reIad~v 196 (399)
T PF00464_consen 187 KRFREIADEV 196 (399)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 6666665554
No 413
>PRK02991 D-serine dehydratase; Provisional
Probab=28.41 E-value=3.3e+02 Score=24.82 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=43.4
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.+++...|..+...=|...+......++..++++++++..
T Consensus 159 ~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~ 212 (441)
T PRK02991 159 SIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGD 212 (441)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC
Confidence 345566677778888889999988777777777777778899999999999875
No 414
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.31 E-value=2.8e+02 Score=24.75 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHcC----CCCCCeEEEEecCCh--hHHHHHHHHHHc------CCeEEecCCCC----CHHHH
Q psy2835 26 FYSDLGAIYAGGLAKAFLKLG----LERYHSVCIIGFNAP--EWFYSDLGAIYA------GGFAAGMYTTN----SPEAC 89 (305)
Q Consensus 26 Ty~el~~~~~~~la~~L~~~g----~~~gd~V~i~~~n~~--~~~~~~~a~~~~------G~~~v~i~~~~----~~~~~ 89 (305)
++.++.+.....+...+...+ -..+..|+++++++. -..++-+|.... |..+..++... ..+++
T Consensus 146 ~~~~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL 225 (388)
T PRK12723 146 DYDKVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI 225 (388)
T ss_pred CHHHHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence 455565532333444443221 112347888999975 444444554332 44444444332 34556
Q ss_pred HHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCC
Q psy2835 90 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKP 132 (305)
Q Consensus 90 ~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 132 (305)
..+.+..+..+...... +.+........... ++.+|..+
T Consensus 226 ~~~a~~lgvpv~~~~~~---~~l~~~L~~~~~~D-lVLIDTaG 264 (388)
T PRK12723 226 QTYGDIMGIPVKAIESF---KDLKEEITQSKDFD-LVLVDTIG 264 (388)
T ss_pred HHHhhcCCcceEeeCcH---HHHHHHHHHhCCCC-EEEEcCCC
Confidence 67677777776655543 33343333344444 44455544
No 415
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=28.08 E-value=2.4e+02 Score=27.52 Aligned_cols=57 Identities=9% Similarity=-0.020 Sum_probs=40.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC---------C-----HHHHHHHHhhC-Cce----EEEEeCh
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---------S-----PEACLHCLVTS-DAN----ICVVEDD 106 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~---------~-----~~~~~~~l~~~-~~~----~v~~~~~ 106 (305)
+++||.|+ +-+|+-.++.- |+...|+.++-+.|.. + ++.++..++.. +++ ++++...
T Consensus 232 ~~~Gd~VL-vdRN~HKSv~h--aLilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT 307 (714)
T PRK15400 232 APAGSTVL-IDRNCHKSLTH--LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST 307 (714)
T ss_pred cCCCCEEE-eecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCC
Confidence 57888655 67777776544 9999999999988764 3 67788888654 233 5665543
No 416
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=28.08 E-value=1.9e+02 Score=24.89 Aligned_cols=53 Identities=13% Similarity=0.005 Sum_probs=26.1
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC---CceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS---DANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~---~~~~v~~~ 104 (305)
++||.|++..+. +.....++...|+.++.++ ..+.+++...++.. +.+++++.
T Consensus 98 ~~gd~v~~~~~~---~~~~~~~~~~~g~~~~~~~-~~d~~~l~~~~~~~~~~~~~~v~~~ 153 (360)
T TIGR00858 98 GKGDLILSDALN---HASLIDGCRLSGARVRRYR-HNDVEHLERLLEKNRGERRKLIVTD 153 (360)
T ss_pred CCCCEEEEEccc---cHHHHHHHHhcCCceEEec-CCCHHHHHHHHHHcccCCCeEEEEe
Confidence 566666544322 2223334445565555443 23556666666542 34555554
No 417
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=28.00 E-value=1.5e+02 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.015 Sum_probs=38.3
Q ss_pred HcCCCCCCeEEEEecCCh--hHHH--HHHHHHHc-CCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 44 KLGLERYHSVCIIGFNAP--EWFY--SDLGAIYA-GGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~--~~~~--~~~a~~~~-G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.-|+.+|..++|.++.+. ..+. .+++.+.. |-.++-+....+++++...++..+.
T Consensus 13 ~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 13 GGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS
T ss_pred cCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence 358999999999999875 2222 33345555 8888888888889988888887764
No 418
>PRK08363 alanine aminotransferase; Validated
Probab=27.97 E-value=4.2e+02 Score=23.34 Aligned_cols=18 Identities=6% Similarity=-0.195 Sum_probs=9.4
Q ss_pred CCCCCCcceEec--hhHHHH
Q psy2835 175 GTEGASKPVMLS--HDNITF 192 (305)
Q Consensus 175 GtTG~pK~v~~s--~~~l~~ 192 (305)
|..|.--|.++. .+.++.
T Consensus 240 ~~~GlRiG~~~~~~~~~~~~ 259 (398)
T PRK08363 240 FATGWRLGYIYFVDPEGKLA 259 (398)
T ss_pred CCccceEEEEEEeCcHHHHH
Confidence 445554566664 444443
No 419
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=27.95 E-value=3.9e+02 Score=23.56 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=14.9
Q ss_pred cCCeEEecCCCCCHH--HHHHHHhhCCceEEEEe
Q psy2835 73 AGGFAAGMYTTNSPE--ACLHCLVTSDANICVVE 104 (305)
Q Consensus 73 ~G~~~v~i~~~~~~~--~~~~~l~~~~~~~v~~~ 104 (305)
-|-.++..++..... ....+.+..+.+++.++
T Consensus 108 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~ 141 (401)
T PRK10874 108 PGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLP 141 (401)
T ss_pred CcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence 344555555544331 23344455555555543
No 420
>COG2746 Aminoglycoside N3'-acetyltransferase [Defense mechanisms]
Probab=27.88 E-value=71 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCCh
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAP 61 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~ 61 (305)
..+...|.++|+++||.|.+++.++.
T Consensus 15 ~~l~~~l~~lG~k~G~~v~vHssl~~ 40 (251)
T COG2746 15 QDLKDDLYKLGLKEGDTVIVHSSLSS 40 (251)
T ss_pred HHHHHHHHHhcCCCCCEEEEehhhhh
Confidence 34555667789999999999987653
No 421
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.80 E-value=3.7e+02 Score=22.63 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=40.5
Q ss_pred CCeEEEEecCChhHHHHHHHHHHcCCeEEecC--CCCCHHH---HHHHHhhCCceEEEEeChHHHHHHHHHhccCC
Q psy2835 50 YHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY--TTNSPEA---CLHCLVTSDANICVVEDDKQLEKILKVKAQCP 120 (305)
Q Consensus 50 gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~--~~~~~~~---~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 120 (305)
..+..+...+...++.--+++-..+. +.+. ..-++.+ +...++..+.++||++....-+.+..+.++..
T Consensus 178 ~~~~~v~~H~af~Yl~~~~gl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g 251 (286)
T cd01019 178 KTKPFFVFHDAYGYFEKRYGLTQAGV--FTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTG 251 (286)
T ss_pred CCCeEEEecccHHHHHHHcCCceeee--ecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcC
Confidence 34566677777776665555433321 1122 2335665 45556788999999987755455555554443
No 422
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.77 E-value=1.6e+02 Score=21.77 Aligned_cols=8 Identities=13% Similarity=-0.213 Sum_probs=4.0
Q ss_pred cchHHHHH
Q psy2835 25 WFYSDLGA 32 (305)
Q Consensus 25 ~Ty~el~~ 32 (305)
++..+|..
T Consensus 85 v~~~~L~~ 92 (141)
T PRK11024 85 LPEEQVVA 92 (141)
T ss_pred cCHHHHHH
Confidence 45555544
No 423
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=27.76 E-value=1.6e+02 Score=25.32 Aligned_cols=49 Identities=14% Similarity=-0.143 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCChhH-HHHHHHHHHcCCe-EEecCCCC
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAPEW-FYSDLGAIYAGGF-AAGMYTTN 84 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~~~-~~~~~a~~~~G~~-~v~i~~~~ 84 (305)
+.+++.|.+.|+.+.+.|++++.++..+ .-+.+.+-..|.. +..++-.+
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~ 139 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGL 139 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCH
Confidence 5678889999999999999998776544 3445667778874 45566554
No 424
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=27.67 E-value=3.1e+02 Score=21.71 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=38.0
Q ss_pred EEecCChhHHHHHHHHHH-cCCeEEecCCCCCHHHHHHHHhhCCceEEEEe------ChHHHHHHHHHhccCCCccEEE
Q psy2835 55 IIGFNAPEWFYSDLGAIY-AGGFAAGMYTTNSPEACLHCLVTSDANICVVE------DDKQLEKILKVKAQCPKLKAIV 126 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~-~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~i 126 (305)
++.++++-+...+-.++. .+.-+..+....+.++....++..+|++++.| .....+.+..+....|..+.++
T Consensus 4 lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iiv 82 (207)
T PRK15411 4 IIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIV 82 (207)
T ss_pred EEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEE
Confidence 344555555444445443 23212223334555666666777778888888 1123455555556666665555
No 425
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=27.58 E-value=4e+02 Score=22.91 Aligned_cols=69 Identities=17% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhH-HHHHHHHHHcCCeEEecC--CCCCHHHHHHHHhhCCceEEEEe
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEW-FYSDLGAIYAGGFAAGMY--TTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~-~~~~~a~~~~G~~~v~i~--~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
...+...+... +++||.|.+..+..... +...........+.++.+ ...+.+++...++..++++|+..
T Consensus 60 t~al~~~~~~~-~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~ 131 (356)
T cd06451 60 TGAMEAALSNL-LEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT 131 (356)
T ss_pred HHHHHHHHHHh-CCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEe
No 426
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=27.40 E-value=66 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=21.0
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 45 LGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
...++||.++|+.+|..+.+-.++..+..
T Consensus 40 l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl 68 (219)
T PF00667_consen 40 LSYQPGDHLGVYPPNDPEEVERLLKRLGL 68 (219)
T ss_dssp G---TT-EEEEE-SSEHHHHHHHHHHHTS
T ss_pred CcccCCCEEEEEccCCHHHHHHHHHHhCC
Confidence 34689999999999999999888888755
No 427
>PRK05968 hypothetical protein; Provisional
Probab=27.39 E-value=3.1e+02 Score=24.29 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=16.7
Q ss_pred HHHHcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEeC
Q psy2835 69 GAIYAGGFAAGMYTTNSP--EACLHCLVTSDANICVVED 105 (305)
Q Consensus 69 a~~~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~~ 105 (305)
+.+..|-.++...+.+.. ..+...+...+.++.+++.
T Consensus 97 al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 97 SFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred HHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 344445544444443332 1233445555555555544
No 428
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=26.86 E-value=4.2e+02 Score=23.00 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=14.1
Q ss_pred CCCCCCcceEechhHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAA 195 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~ 195 (305)
|.+|.+=|.+...+.+...+.
T Consensus 231 g~~GlRiG~~~~~~~~~~~l~ 251 (368)
T PRK03317 231 AFAGGRLGYLAAAPAVVDALR 251 (368)
T ss_pred ccchhhhhhhhCCHHHHHHHH
Confidence 556777777777776665544
No 429
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=26.86 E-value=3.5e+02 Score=22.01 Aligned_cols=65 Identities=14% Similarity=0.014 Sum_probs=44.7
Q ss_pred hcccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC-CCCCHHH
Q psy2835 11 RYHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY-TTNSPEA 88 (305)
Q Consensus 11 ~~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~-~~~~~~~ 88 (305)
.+||..+++- .+...+|.++.+ .+..+-..|.+.|+..- +-..+..+. -+++||. +..+-++
T Consensus 91 e~PD~lvfDLDP~~~~~f~~v~~-~A~~vr~~L~~lgL~~f--~KTSG~kGl-------------HV~vPl~~~~~~~~~ 154 (223)
T cd04866 91 NKPSEIVFDLDPPSRDHFSLAVE-AANLLKEILDALGLTSF--VKTSGNKGL-------------QVYIPLPDNKFTYDE 154 (223)
T ss_pred CCCCeEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCccc--eEccCCCeE-------------EEEEEcCCCCCCHHH
Confidence 5788888875 456899999999 79999999999997631 222222222 2677888 7777555
Q ss_pred HHH
Q psy2835 89 CLH 91 (305)
Q Consensus 89 ~~~ 91 (305)
...
T Consensus 155 ~r~ 157 (223)
T cd04866 155 TRL 157 (223)
T ss_pred HHH
Confidence 443
No 430
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=26.83 E-value=3.6e+02 Score=22.22 Aligned_cols=49 Identities=8% Similarity=-0.074 Sum_probs=28.3
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHH
Q psy2835 18 IGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAI 71 (305)
Q Consensus 18 ~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~ 71 (305)
..++....|-.....| |.++.++|--.|-+|.+++.+..-++++.+...
T Consensus 18 ~~~DQ~~~T~eT~~~R-----a~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~ 66 (243)
T PF01861_consen 18 VELDQGYATPETTLRR-----AALMAERGDLEGKRILFLGDDDLTSLALALTGL 66 (243)
T ss_dssp GGGT---B-HHHHHHH-----HHHHHHTT-STT-EEEEES-TT-HHHHHHHHT-
T ss_pred cccccccccHHHHHHH-----HHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCC
Confidence 3356667787777665 346677776678899999998887777665443
No 431
>PTZ00377 alanine aminotransferase; Provisional
Probab=26.77 E-value=3.6e+02 Score=24.68 Aligned_cols=19 Identities=5% Similarity=-0.143 Sum_probs=9.2
Q ss_pred CCCcceEec---hhHHHHHHHH
Q psy2835 178 GASKPVMLS---HDNITFNAAC 196 (305)
Q Consensus 178 G~pK~v~~s---~~~l~~~~~~ 196 (305)
|.==|.+.. ...++..+..
T Consensus 306 GlRiG~~~~~~~p~~li~~l~~ 327 (481)
T PTZ00377 306 GRRGGYFELTNIPPEVREQIYK 327 (481)
T ss_pred cCceEEEEEeCCCHHHHHHHHH
Confidence 433455543 4555554444
No 432
>PRK12483 threonine dehydratase; Reviewed
Probab=26.72 E-value=5.3e+02 Score=24.11 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=42.5
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.++|...|..+..+=|...+......++..+++++++.+.
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~ 140 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES 140 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34555677777888899999988887777777777788899999999999765
No 433
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=26.69 E-value=4.2e+02 Score=22.91 Aligned_cols=59 Identities=8% Similarity=-0.171 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEecCChh-HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPE-WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
|.+++...+++..++.+ +..++.++...|-..+.+.+..-...+..+.+..+.+++.++
T Consensus 49 ~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~ 108 (363)
T TIGR02326 49 TAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVD 108 (363)
T ss_pred CCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEe
Confidence 55554334444444444 444444555555544444444333445566677777777664
No 434
>PRK06260 threonine synthase; Validated
Probab=26.69 E-value=2.6e+02 Score=24.94 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=44.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEE
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANIC 101 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v 101 (305)
-+-||++-.. .. +.....+.|. +.| +....+..-..+.+.+...|..+..+-|.. ........++..+++++
T Consensus 94 PTGSfKdRga--~~-~v~~a~~~g~---~~v-v~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi 166 (397)
T PRK06260 94 PTGSFKDRGM--TV-GVTKALELGV---KTV-ACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVL 166 (397)
T ss_pred CCcCcHHHHH--HH-HHHHHHHcCC---CEE-EEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEE
Confidence 3455665543 22 2333445553 233 334445445555566677787777666653 33444445778999999
Q ss_pred EEeCh
Q psy2835 102 VVEDD 106 (305)
Q Consensus 102 ~~~~~ 106 (305)
.++..
T Consensus 167 ~v~~~ 171 (397)
T PRK06260 167 EVDGN 171 (397)
T ss_pred EECCc
Confidence 99875
No 435
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=26.60 E-value=3.4e+02 Score=23.15 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe-EEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF-AAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~-~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+...++.+|++|+|......-.+.+.+| ...|+. ++.++.+ .+ -..+++..+++.++...
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~--~~-~~~~~~~~ga~~~i~~~ 216 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPS--PE-RLELAKALGADFVINSG 216 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCC--HH-HHHHHHHhCCCEEEcCC
Confidence 4556888999999997644444444444 456776 5555433 23 33455677877776543
No 436
>PRK10537 voltage-gated potassium channel; Provisional
Probab=26.45 E-value=1.8e+02 Score=25.97 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=42.1
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..|++.|+++-+.|.+..+|..+-..+.+++-..+-..-.+- ....++-.+.+++.+++.++....
T Consensus 293 e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa-~v~~~~~~~~L~~~GaD~VIsp~~ 358 (393)
T PRK10537 293 AVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVA-AVNDSKNLEKIKRVHPDMIFSPQL 358 (393)
T ss_pred HHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEE-EECCHHHHHHHHhcCCCEEECHHH
Confidence 456677888777788888888777777777766652100111 122234456678888888888765
No 437
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=26.39 E-value=1.2e+02 Score=17.39 Aligned_cols=20 Identities=30% Similarity=0.044 Sum_probs=15.1
Q ss_pred HHHHcCCCCCCeEEEEecCC
Q psy2835 41 AFLKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~ 60 (305)
+..++|+++||.|.+...+.
T Consensus 15 ~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 15 IREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp HHHHTTSSTTTEEEEEEETT
T ss_pred HHHHcCCCCCCEEEEEEeCC
Confidence 44567999999998876553
No 438
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=26.24 E-value=49 Score=27.63 Aligned_cols=17 Identities=12% Similarity=-0.246 Sum_probs=12.6
Q ss_pred CCCeEEEEecCChhHHH
Q psy2835 49 RYHSVCIIGFNAPEWFY 65 (305)
Q Consensus 49 ~gd~V~i~~~n~~~~~~ 65 (305)
.-|-|.+.++|.++++.
T Consensus 69 ~~d~iiftS~NAV~~~~ 85 (266)
T PRK08811 69 AAPIVVFTSPAAVRAAH 85 (266)
T ss_pred cCCEEEEECHHHHHHHH
Confidence 45678888888887764
No 439
>PLN02242 methionine gamma-lyase
Probab=26.20 E-value=3.3e+02 Score=24.51 Aligned_cols=94 Identities=11% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHH--HcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHH----
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAI--YAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ---- 108 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~--~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~---- 108 (305)
...+...+... +++||.|++..+--......+.... ..|+.+..++.. +.+++...++..++++|+++....
T Consensus 101 ~~Ai~~al~al-~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-d~e~l~~~i~~~~tklV~lesp~NPtG~ 178 (418)
T PLN02242 101 MSAISSVLLQL-CSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDIT-DLEAVKKAVVPGKTKVLYFESISNPTLT 178 (418)
T ss_pred HHHHHHHHHHH-hCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC-CHHHHHHhcCcCCCEEEEEecCCCCCCc
Q ss_pred HHHHHHHhccCCCccEEEEccC
Q psy2835 109 LEKILKVKAQCPKLKAIVQYEG 130 (305)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~ 130 (305)
...+.++.+-+......+++|+
T Consensus 179 v~dl~~I~~la~~~gi~livDe 200 (418)
T PLN02242 179 VADIPELARIAHEKGVTVVVDN 200 (418)
T ss_pred ccCHHHHHHHHHHhCCEEEEEC
No 440
>PRK03321 putative aminotransferase; Provisional
Probab=26.09 E-value=4.3e+02 Score=22.76 Aligned_cols=53 Identities=11% Similarity=-0.051 Sum_probs=22.7
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~ 103 (305)
.++||.|++-.+.- .....++...|+.++.++.. ...+++...++. ++++++.
T Consensus 95 ~~~gd~Vli~~p~y---~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~-~~~~v~l 151 (352)
T PRK03321 95 AGPGDEVIFAWRSF---EAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITD-RTRLIFV 151 (352)
T ss_pred cCCCCEEEeCCCCH---HHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhcc-CCCEEEE
Confidence 35566655533321 11122234455554444322 234555554433 4555544
No 441
>PRK10083 putative oxidoreductase; Provisional
Probab=25.95 E-value=3.5e+02 Score=23.00 Aligned_cols=59 Identities=10% Similarity=-0.083 Sum_probs=35.4
Q ss_pred HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe-EEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 44 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF-AAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~-~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
..++++|++|+|......-..++.+|-...|+. ++..+.+ ++-..++...+++.++...
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~---~~~~~~~~~~Ga~~~i~~~ 214 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRI---DERLALAKESGADWVINNA 214 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCC---HHHHHHHHHhCCcEEecCc
Confidence 457889999999985544444444444345874 4444432 3344556677777776543
No 442
>PTZ00323 NAD+ synthase; Provisional
Probab=25.94 E-value=4.2e+02 Score=22.61 Aligned_cols=89 Identities=8% Similarity=-0.115 Sum_probs=58.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc-CC-------eEEecCCCC-C---HHHH
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GG-------FAAGMYTTN-S---PEAC 89 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~-G~-------~~v~i~~~~-~---~~~~ 89 (305)
.+.|+..++.+..+..+..+|++.|.+ .+++-..-+.++.++..-|.++ |. +.....|.. + .+..
T Consensus 21 ~~~~~~~~~i~~~~~~L~~~l~~~g~~---~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A 97 (294)
T PTZ00323 21 KRAFNPAAWIEKKCAKLNEYMRRCGLK---GCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRG 97 (294)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCC---cEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHH
Confidence 456888888876677777788777643 4777788888888777666654 32 222223322 2 3456
Q ss_pred HHHHhhCCceEEEEeChHHHHHHH
Q psy2835 90 LHCLVTSDANICVVEDDKQLEKIL 113 (305)
Q Consensus 90 ~~~l~~~~~~~v~~~~~~~~~~~~ 113 (305)
..+.+..+...++.+-....+...
T Consensus 98 ~~la~~lGi~~~~idi~~l~~~~~ 121 (294)
T PTZ00323 98 RENIQACGATEVTVDQTEIHTQLS 121 (294)
T ss_pred HHHHHHhCCcEEEEECcHHHHHHH
Confidence 677889999998888664333333
No 443
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=25.80 E-value=1.9e+02 Score=20.86 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=5.6
Q ss_pred ccCCccchHHHHH
Q psy2835 20 FNAPEWFYSDLGA 32 (305)
Q Consensus 20 ~~~~~~Ty~el~~ 32 (305)
..++..+|+.+.+
T Consensus 99 ~aD~~~~~~~vv~ 111 (129)
T TIGR02801 99 RADKTVPYGEVIK 111 (129)
T ss_pred EcCCCCCHHHHHH
Confidence 3444444444443
No 444
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=25.73 E-value=1.8e+02 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 31 GAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 31 ~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+| .+..++++. +.+++++|++.++...+ .-++|+ |+....+.-++++|.+..-
T Consensus 86 lEr-ieg~~~~~l~~~~i~~~DVliviSnSG--------------rNpvpi-------e~A~~~rekGa~vI~vTSl 140 (243)
T COG4821 86 LER-IEGYAKLFLHRLQIRPNDVLIVISNSG--------------RNPVPI-------EVAEYAREKGAKVIAVTSL 140 (243)
T ss_pred hHh-hhhHHHHHHHHhcCCCCCEEEEEeCCC--------------CCCcch-------HHHHHHHhcCCeEEEEehh
Confidence 344 666776665 56999999777776543 334444 4566677778888777643
No 445
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.59 E-value=3.7e+02 Score=21.92 Aligned_cols=65 Identities=12% Similarity=-0.070 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC---eEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG---FAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~---~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
....+.+.| .|.|.+..+.+....-.+--+-..|+ .-+.++|..+.+.+..++...+.-+|.+-.
T Consensus 83 ~i~~~~~aG---ad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 83 VAKACVAAG---ADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLD 150 (228)
T ss_pred HHHHHHHhC---CCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 344445555 56899988876665555555667784 677899999999999999988876666643
No 446
>PTZ00297 pantothenate kinase; Provisional
Probab=25.48 E-value=7.7e+02 Score=26.64 Aligned_cols=85 Identities=9% Similarity=-0.117 Sum_probs=63.8
Q ss_pred eEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcE
Q psy2835 183 VMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHV 259 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~ 259 (305)
..+|++.+...+..+... +++ .++|++...++=..- .+...++++..|+..+-.... +..+...++..++.+
T Consensus 456 ~~lTY~El~~~V~~lAa~L~~lGV-~~GDrVaIls~N~~E--wvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akv 530 (1452)
T PTZ00297 456 EWLTYGTVDARARELGSGLLALGV-RPGDVIGVDCEASRN--IVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKV 530 (1452)
T ss_pred eEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcE
Confidence 358999888877765554 467 899998888776532 234468888899888876433 467888899999999
Q ss_pred EEechHHHHHHHH
Q psy2835 260 FLAVPRVWEKIHE 272 (305)
Q Consensus 260 ~~~~P~~~~~l~~ 272 (305)
+++....+..+.+
T Consensus 531 Vfv~~~~l~kl~~ 543 (1452)
T PTZ00297 531 VFADRNSVAAILT 543 (1452)
T ss_pred EEEchhHHHHHHh
Confidence 9998887777654
No 447
>PLN02970 serine racemase
Probab=25.34 E-value=4.4e+02 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.034 Sum_probs=40.3
Q ss_pred EEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 55 i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+....+..-..+.++|...|..+..+=|.....+....++..+++++.++..
T Consensus 79 v~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~ 130 (328)
T PLN02970 79 VTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT 130 (328)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCC
Confidence 4456677777788888888987776666655566667899999999999875
No 448
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.26 E-value=1e+02 Score=21.49 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=35.8
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
..|.+.|+..-+.|.+..++....+.+...+-..+- ..+. ......+....++..+++.++.
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii--~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII--ARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE--EEESSHHHHHHHHHTT-SEEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE--EEECCHHHHHHHHHCCcCEEEC
Confidence 456677887777788887777766666555554322 1111 1222344456667777777764
No 449
>PRK07337 aminotransferase; Validated
Probab=25.13 E-value=4.2e+02 Score=23.21 Aligned_cols=23 Identities=4% Similarity=-0.060 Sum_probs=13.1
Q ss_pred CCCCCcceEechhHHHHHHHHHH
Q psy2835 176 TEGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 176 tTG~pK~v~~s~~~l~~~~~~~~ 198 (305)
..|.=-|.++....+...+....
T Consensus 236 ~~G~RiG~~~~~~~l~~~l~~~~ 258 (388)
T PRK07337 236 MTGWRLGWLVVPEALVGTFEKLA 258 (388)
T ss_pred CchhheeeeecCHHHHHHHHHHH
Confidence 34443567777777666554433
No 450
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.10 E-value=3.2e+02 Score=23.03 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=39.8
Q ss_pred CCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH---HHHHhhCCceEEEEeChHHHHHHHHHhccC
Q psy2835 50 YHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC---LHCLVTSDANICVVEDDKQLEKILKVKAQC 119 (305)
Q Consensus 50 gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~---~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 119 (305)
..+..+...+...++.--+++-..+..-.-=...-+++++ ...+++.+.++||++....-..+..+.++.
T Consensus 176 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~ 248 (287)
T cd01137 176 EKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKET 248 (287)
T ss_pred ccCEEEEecccHHHHHHHcCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHh
Confidence 3466777777777776655554443211101222345554 455678889999998765444444444433
No 451
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=25.03 E-value=4.1e+02 Score=23.24 Aligned_cols=17 Identities=0% Similarity=0.049 Sum_probs=11.1
Q ss_pred cceEechhHHHHHHHHH
Q psy2835 181 KPVMLSHDNITFNAACI 197 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~~ 197 (305)
-|.++..+.+...+...
T Consensus 246 iG~~i~~~~l~~~~~~~ 262 (383)
T TIGR03540 246 IGMAVGNADLIAGLGKV 262 (383)
T ss_pred eeEEeCCHHHHHHHHHH
Confidence 57777777776655543
No 452
>KOG3938|consensus
Probab=25.01 E-value=1.7e+02 Score=24.34 Aligned_cols=52 Identities=12% Similarity=-0.009 Sum_probs=44.9
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchh
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~ 217 (305)
-.|-+++++-=-.|.|-|.+....|+--.-..+.+++.+ ++.|+++|.+.-+
T Consensus 50 ~~p~LvF~~QLAHGSptg~Ie~fsnv~ELY~kIAe~F~I-s~~dIlfcTlNsh 101 (334)
T KOG3938|consen 50 VRPRLVFHCQLAHGSPTGRIEGFSNVRELYQKIAEAFDI-SPDDILFCTLNSH 101 (334)
T ss_pred CCCceeEeeeeccCCccceecccccHHHHHHHHHHHhcC-CccceEEEecCCC
Confidence 345788888888999999999999999888888999999 9999999995543
No 453
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=24.97 E-value=2.9e+02 Score=22.36 Aligned_cols=54 Identities=11% Similarity=0.045 Sum_probs=38.5
Q ss_pred HcCCCCCCeEEEEecCCh--hHHHH--HHHHHHcCCeEEecCCCCCHHHHHHHHhhCC
Q psy2835 44 KLGLERYHSVCIIGFNAP--EWFYS--DLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~--~~~~~--~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 97 (305)
.-|+.+|..+.|..+.+. ..+.. ++..++.|-.++-+....+++++...+...+
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFG 72 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhC
Confidence 348999999999998876 22222 3334467888888888888888877666544
No 454
>PRK06855 aminotransferase; Validated
Probab=24.97 E-value=2.8e+02 Score=24.93 Aligned_cols=10 Identities=0% Similarity=-0.170 Sum_probs=5.0
Q ss_pred CHHHHHHHHh
Q psy2835 85 SPEACLHCLV 94 (305)
Q Consensus 85 ~~~~~~~~l~ 94 (305)
..+++...++
T Consensus 158 d~~~l~~~~~ 167 (433)
T PRK06855 158 DLDDLENKVK 167 (433)
T ss_pred CHHHHHHHHh
Confidence 4455555554
No 455
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=24.93 E-value=1.8e+02 Score=25.49 Aligned_cols=54 Identities=9% Similarity=-0.056 Sum_probs=29.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC-----CceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS-----DANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~-----~~~~v~~~ 104 (305)
+++||.|.+-.+..+. ...++...|...+... ..+.+++...++.. +.++|+++
T Consensus 119 ~~~gd~vi~~~~~~~s---~~~~~~~~~~~~~~~~-~~d~~~l~~~i~~~~~~~~~~~~v~~~ 177 (393)
T TIGR01822 119 LGAEDAIISDALNHAS---IIDGVRLCKAKRYRYA-NNDMADLEAQLKEARAAGARHRLIATD 177 (393)
T ss_pred CCCCCEEEEeccccHH---HHHHHHhcCCceEEeC-CCCHHHHHHHHHhhhhcCCCceEEEEe
Confidence 4678877665444332 3334444555444332 45667777777642 56666665
No 456
>KOG0025|consensus
Probab=24.91 E-value=4.2e+02 Score=22.73 Aligned_cols=63 Identities=17% Similarity=-0.049 Sum_probs=45.5
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeE-EecCCCCCHHHHHHHHhhCCceEEEEeChHH
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA-AGMYTTNSPEACLHCLVTSDANICVVEDDKQ 108 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~-v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 108 (305)
.+++||.|+=-..||.---.+.-=|-..|+.. -.+--+-.-+++.+.|+..+++-||++.+..
T Consensus 157 ~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~ 220 (354)
T KOG0025|consen 157 QLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELR 220 (354)
T ss_pred hcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhc
Confidence 56789988777777765444444444455444 3455567789999999999999999998743
No 457
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=24.86 E-value=2.2e+02 Score=25.96 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=30.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC------------C--CCHHHHHHHHhhC---CceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT------------T--NSPEACLHCLVTS---DANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~------------~--~~~~~~~~~l~~~---~~~~v~~~ 104 (305)
+++|| |++. |. .|....-.+...|+.++.++. . .+.++++..+... +.++|+..
T Consensus 114 l~pGD-Vii~--~p-~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~ 184 (460)
T PRK13238 114 IKKGD-VVPS--NY-HFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMT 184 (460)
T ss_pred CCCCC-EEcc--CC-cccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeEEEEe
Confidence 67899 4432 22 222222224456776665532 1 5678888888753 46677753
No 458
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=24.80 E-value=4.2e+02 Score=22.26 Aligned_cols=78 Identities=12% Similarity=-0.028 Sum_probs=53.2
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+++...++-|+.-++...| ...|=.++.++ +.++...|.+++++ +.++.-|+...++.-.-=.+....
T Consensus 19 sVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~-~~~i~~~l~~~~ik----~lVIACNTASa~al~~LR~~~~iP 93 (269)
T COG0796 19 SVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRER-TLEIVDFLLERGIK----ALVIACNTASAVALEDLREKFDIP 93 (269)
T ss_pred HHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHH-HHHHHHHHHHcCCC----EEEEecchHHHHHHHHHHHhCCCC
Confidence 46777888889977775533 35777899996 99999999999854 777777876655443333344555
Q ss_pred EEecCCCCC
Q psy2835 77 AAGMYTTNS 85 (305)
Q Consensus 77 ~v~i~~~~~ 85 (305)
++.+=|...
T Consensus 94 VvGviPaik 102 (269)
T COG0796 94 VVGVIPAIK 102 (269)
T ss_pred EEEeccchH
Confidence 554445544
No 459
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=24.74 E-value=2.1e+02 Score=20.93 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=29.3
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHh
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVK 116 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 116 (305)
.-++.+......+.+.++.++.+|+++++.++...+.+.+..
T Consensus 25 f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~ 66 (129)
T PF02670_consen 25 FEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKAL 66 (129)
T ss_dssp EEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHH
T ss_pred eEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHh
Confidence 344555566677889999999999999998775555555443
No 460
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.71 E-value=3.4e+02 Score=21.61 Aligned_cols=73 Identities=10% Similarity=0.027 Sum_probs=41.5
Q ss_pred CeEEEEe-cCChhHHHHHHHH-----HHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCcc
Q psy2835 51 HSVCIIG-FNAPEWFYSDLGA-----IYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLK 123 (305)
Q Consensus 51 d~V~i~~-~n~~~~~~~~~a~-----~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
|-++++. ++|+.++-.-.|- ..-....|.+-.+.+.+++..+++..++++|=.......+.+.++....+..+
T Consensus 23 D~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e~~~~~~~l~~~~~~~~ 101 (207)
T PRK13958 23 DAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTESIDFIQEIKKKYSSIK 101 (207)
T ss_pred CEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHhhcCCCce
Confidence 4676664 6666554322222 22123345555566788888888888888887776544444445544443333
No 461
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.70 E-value=3.9e+02 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=12.2
Q ss_pred CCCCCCcceEec-hhHHHHHHH
Q psy2835 175 GTEGASKPVMLS-HDNITFNAA 195 (305)
Q Consensus 175 GtTG~pK~v~~s-~~~l~~~~~ 195 (305)
|..|.=-|++++ .+.+...+.
T Consensus 282 g~~GlRvG~ivs~n~~l~~~~~ 303 (447)
T PLN02607 282 GLPGFRVGTIYSYNDKVVTTAR 303 (447)
T ss_pred CCCcceEEEEEEcCHHHHHHHH
Confidence 455655777887 445544443
No 462
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=24.67 E-value=4.2e+02 Score=23.49 Aligned_cols=34 Identities=6% Similarity=-0.053 Sum_probs=14.1
Q ss_pred HHcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEe
Q psy2835 71 IYAGGFAAGMYTTNSP--EACLHCLVTSDANICVVE 104 (305)
Q Consensus 71 ~~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~ 104 (305)
+..|-.++..++.++. ..+...+...+.++.+++
T Consensus 97 l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d 132 (388)
T PRK07811 97 LRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVD 132 (388)
T ss_pred hCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeC
Confidence 3444444444444432 122333334455544444
No 463
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.45 E-value=1.8e+02 Score=17.75 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHH
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYS 66 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~ 66 (305)
.+++-..+++.|+ +...-|++.+++..|-+.
T Consensus 14 l~~~l~~~r~~~~-~~~~kAvlT~tN~~Wt~~ 44 (58)
T PF12646_consen 14 LDKFLDALRKAGI-PIPLKAVLTPTNINWTLK 44 (58)
T ss_pred HHHHHHHHHHcCC-CcceEEEECCCcccCcHH
Confidence 3445567777787 666778888887776544
No 464
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=24.44 E-value=3.3e+02 Score=20.89 Aligned_cols=77 Identities=13% Similarity=-0.060 Sum_probs=45.8
Q ss_pred eeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC-ChhHHHHHHHHHHcC--CeEEecCCCCCHHHHHHHHh
Q psy2835 18 IGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFN-APEWFYSDLGAIYAG--GFAAGMYTTNSPEACLHCLV 94 (305)
Q Consensus 18 ~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G--~~~v~i~~~~~~~~~~~~l~ 94 (305)
+.+.++.+|=+-..+ +++.|++|..+|+.+ |+|.....- .-+-.-.+...+... .++--+.|.-.+..+...++
T Consensus 19 ~~D~dR~Lt~~G~~e--a~~~a~~L~~~~~~~-D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~~~l~p~~d~~~~l~~l~ 95 (163)
T COG2062 19 IADFDRPLTERGRKE--AELVAAWLAGQGVEP-DLVLVSPAVRARQTAEIVAEHLGEKKVEVFEELLPNGDPGTVLDYLE 95 (163)
T ss_pred CCCccCcCCHHHHHH--HHHHHHHHHhcCCCC-CEEEeChhHHHHHHHHHHHHhhCcccceeccccCCCCCHHHHHHHHH
Confidence 446678899888887 889999999999843 455443221 222222223332222 33444556666666666665
Q ss_pred hCC
Q psy2835 95 TSD 97 (305)
Q Consensus 95 ~~~ 97 (305)
...
T Consensus 96 ~~~ 98 (163)
T COG2062 96 ALG 98 (163)
T ss_pred Hhc
Confidence 554
No 465
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=24.42 E-value=4.3e+02 Score=23.38 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.9
Q ss_pred HhhCCceEEEE
Q psy2835 93 LVTSDANICVV 103 (305)
Q Consensus 93 l~~~~~~~v~~ 103 (305)
.+..+.+++..
T Consensus 134 ~~~~g~~v~~v 144 (406)
T PRK09295 134 CARVGAELRVI 144 (406)
T ss_pred HHHcCcEEEEE
Confidence 34444444444
No 466
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.27 E-value=1.7e+02 Score=24.50 Aligned_cols=57 Identities=9% Similarity=-0.104 Sum_probs=40.3
Q ss_pred hHHHHHHHhcc-cceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q psy2835 3 AFLKLGLERYH-SVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 3 ~~l~~~~~~~~-~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~ 60 (305)
+.|+...+..+ ++.++...+-+-+|.++.......+..++.+.. .+|+.|.++..+.
T Consensus 170 ~tL~d~~~~~g~~r~v~vaRELTK~~Ee~~~g~~~e~~~~~~~~~-~KGE~vlvv~~~~ 227 (275)
T COG0313 170 ATLEDIVEVLGSDREVVVARELTKLFEEIYRGTLSELIEWLEEDT-LKGEFVLVVEGKN 227 (275)
T ss_pred HHHHHHHHHcCCCceEEEEeecccchhheecccHHHHHHHhhhcC-CcccEEEEEeCCc
Confidence 45666677777 677776666667788877545666777787766 7899988886643
No 467
>TIGR00623 sula cell division inhibitor SulA. All proteins in this family for which the functions are known are cell division inhibitors. In E. coli, SulA is one of the SOS regulated genes.
Probab=24.25 E-value=2.9e+02 Score=21.28 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHH--HHHHHHHcCCeEE-ecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFY--SDLGAIYAGGFAA-GMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~--~~~a~~~~G~~~v-~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+.-.|.+.+ ..+.-|+++.|...-... ...|+-.-....+ +.++.......++.|+.-.+.+|++
T Consensus 49 LlP~L~~Ls-~~~Rwlv~IaPP~~~~~~~L~~~Gl~l~rvlli~~~~~~d~lwa~EQaLrSG~c~aVL~ 116 (168)
T TIGR00623 49 LLPLLQQLG-QQSRWQLWLTPQQKLSKEWVQSSGLPLTKVMQISQLSPCNTVESMIRALRTGNYSVVIG 116 (168)
T ss_pred HHHHHHHhc-ccCceEEEECCCCccCHHHHHHcCCChhHEEEEecCCchhHHHHHHHHHHhCCCcEEEe
Confidence 555556665 345567888777552221 1222222222111 2244445566888999999999998
No 468
>PLN02409 serine--glyoxylate aminotransaminase
Probab=24.24 E-value=5e+02 Score=23.04 Aligned_cols=57 Identities=7% Similarity=-0.209 Sum_probs=34.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhh---CCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVT---SDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~---~~~~~v~~~ 104 (305)
+++||.|++..+... ...+.-.+-..|+.+..++.. .+.+++...++. .++++|++.
T Consensus 81 ~~~Gd~Vlv~~~~~~-~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~ 144 (401)
T PLN02409 81 LSPGDKVVSFRIGQF-SLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVV 144 (401)
T ss_pred CCCCCEEEEeCCCch-hHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEE
Confidence 578999887764332 222223344567666655432 468888888875 367777664
No 469
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=24.24 E-value=3.1e+02 Score=23.42 Aligned_cols=53 Identities=13% Similarity=-0.053 Sum_probs=27.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC----CceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS----DANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~----~~~~v~~~ 104 (305)
++||.|++-. +.+.....++...|+.++.++ ....+++..+++.. ++.+++++
T Consensus 83 ~~gd~Vl~~~---~~~~~~~~~~~~~g~~~~~~~-~~~~~~le~~i~~~~~~~~~~~v~~~ 139 (349)
T cd06454 83 GKGDLIISDS---LNHASIIDGIRLSGAKKRIFK-HNDMEDLEKLLREARRPYGKKLIVTE 139 (349)
T ss_pred CCCCEEEEeh---hhhHHHHHHHHHcCCceEEec-CCCHHHHHHHHHHhhccCCCeEEEEe
Confidence 4666665532 223333344555666665553 34556666666642 34555543
No 470
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=24.17 E-value=2.7e+02 Score=25.99 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=9.6
Q ss_pred CCCCCCcceEechhH
Q psy2835 175 GTEGASKPVMLSHDN 189 (305)
Q Consensus 175 GtTG~pK~v~~s~~~ 189 (305)
|.||.=-|.+..++.
T Consensus 313 g~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 313 GATGWRLGTIALHKD 327 (521)
T ss_pred cCchhhhhhhhcCch
Confidence 567766677666653
No 471
>PRK09275 aspartate aminotransferase; Provisional
Probab=24.16 E-value=2.7e+02 Score=26.03 Aligned_cols=55 Identities=2% Similarity=-0.154 Sum_probs=26.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC------CCCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT------TNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~------~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+.+||.|++..|--.. +.........|..+++++. ..+.+++...+ .-++++++.
T Consensus 187 l~pGD~Vlv~~P~y~~-Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~-~~~tkai~l 247 (527)
T PRK09275 187 LKAGDKIALMTPIFTP-YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLR-DPSIKALFL 247 (527)
T ss_pred CCCCCEEEEeCCChHH-HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhc-CCCCCEEEE
Confidence 4667776666553322 2222223334555555532 23445555543 234555554
No 472
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=24.15 E-value=3.1e+02 Score=21.10 Aligned_cols=46 Identities=11% Similarity=-0.079 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHc--CCCCCCeEEEEecCChhHHHHHHHHH
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKL--GLERYHSVCIIGFNAPEWFYSDLGAI 71 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~--g~~~gd~V~i~~~n~~~~~~~~~a~~ 71 (305)
-+||.|+.++ +.++|..+.+. |.+ .+.|.-+...+..+...+...+
T Consensus 6 l~s~~~i~~~-i~~la~~i~~~~~~~~-~~viv~il~gG~~~a~~La~~L 53 (176)
T PRK05205 6 ILDAEALRRA-LTRIAHEIIERNKGLD-NLVLVGIKTRGVWLAERLAERL 53 (176)
T ss_pred cCCHHHHHHH-HHHHHHHHHHHcCCCC-CeEEEEEccCCHHHHHHHHHHH
Confidence 4899999995 99999999875 332 3334334444544444444433
No 473
>PTZ00376 aspartate aminotransferase; Provisional
Probab=24.13 E-value=4.9e+02 Score=23.04 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=15.9
Q ss_pred HHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 71 IYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 71 ~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
..-|-.++.-+|.++.- ...++..+.+++-+
T Consensus 121 ~~~Gd~Vlv~~P~y~~~--~~~~~~~G~~~~~v 151 (404)
T PTZ00376 121 LPAGTTVYVSNPTWPNH--VNIFKSAGLNVKEY 151 (404)
T ss_pred cCCCCEEEEcCCCchhH--HHHHHHcCCceeec
Confidence 34466666666666533 23444555555444
No 474
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=24.04 E-value=3e+02 Score=20.27 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEec
Q psy2835 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 217 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
.|..|........-..|..++.......++++.+.+.++++.++.++
T Consensus 15 ~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 15 CHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 56677655444555688888888877767999999999999987664
No 475
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=24.04 E-value=3.2e+02 Score=22.86 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=37.8
Q ss_pred eEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHH---HHHHhhCCceEEEEeChHHHHHHHHHhccC
Q psy2835 52 SVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEAC---LHCLVTSDANICVVEDDKQLEKILKVKAQC 119 (305)
Q Consensus 52 ~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~---~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 119 (305)
+..+...+...++.-.+++-..|..-.--...-++.++ ...+++.+.++||++....-..+..+.++.
T Consensus 172 ~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~ 242 (282)
T cd01017 172 KTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKET 242 (282)
T ss_pred CeEEEecccHHHHHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHc
Confidence 45566777777666655554443211101123345554 456678889999998875434444444333
No 476
>KOG3055|consensus
Probab=23.98 E-value=3.7e+02 Score=21.25 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE-----eChHHH
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV-----EDDKQL 109 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~-----~~~~~~ 109 (305)
+...|..-+..+++ |-+|+.+.||+-+...-.+-.+-.| .-+.-....+.....++.--.++|++ +..+.+
T Consensus 46 ssyYAklYK~~~l~-G~HVImLGPn~~~AA~~ALh~~Pg~---LQvGGGIN~~Nc~~wl~egASkVIVTSwlF~~g~fdL 121 (263)
T KOG3055|consen 46 SSYYAKLYKEDGLT-GGHVIMLGPNSQAAAIGALHAYPGG---LQVGGGINSENCMSWLEEGASKVIVTSWLFNNGKFDL 121 (263)
T ss_pred hHHHHHHHhhcCCC-cceEEEECCCcHHHHHHHHHhCCCc---eeecCccChHHHHHHHHhcCceEEEEEEeccCCcccH
Confidence 34456666667776 6689999999988665555443322 22333455566777777766666655 455677
Q ss_pred HHHHHHhccCCCccEEEEccCCC
Q psy2835 110 EKILKVKAQCPKLKAIVQYEGKP 132 (305)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~ 132 (305)
++++.+...+..-+.++.+....
T Consensus 122 ~RLk~i~s~~GKdRlvvDlSCRk 144 (263)
T KOG3055|consen 122 ERLKDIVSIVGKDRLVVDLSCRK 144 (263)
T ss_pred HHHHHHHHHhCcceEEEEeeeec
Confidence 88887777666656565554443
No 477
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.82 E-value=5.5e+02 Score=23.27 Aligned_cols=81 Identities=5% Similarity=-0.161 Sum_probs=54.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe--cCCCCCHHHHHHHHhhCCce
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG--MYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~--i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.|.+=.--.-..+...+.+..--+|-+|+++.+=.++..+.+..+...|+-+.. -+|....++....|...+..
T Consensus 20 ~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~ 99 (425)
T PRK05476 20 RKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIP 99 (425)
T ss_pred hHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCce
Confidence 3455555533211223333444444456889999999999999999999999987543 35777788888888888887
Q ss_pred EEE
Q psy2835 100 ICV 102 (305)
Q Consensus 100 ~v~ 102 (305)
++=
T Consensus 100 v~a 102 (425)
T PRK05476 100 VFA 102 (425)
T ss_pred EEe
Confidence 543
No 478
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=23.69 E-value=3.9e+02 Score=23.87 Aligned_cols=54 Identities=9% Similarity=-0.011 Sum_probs=42.2
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.++|...|..+..+=|...+.+....++..++.+++++..
T Consensus 115 ~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~ 168 (396)
T TIGR03528 115 TFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLN 168 (396)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCC
Confidence 455566677777888888899987777666666667777789999999999875
No 479
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=23.67 E-value=5.8e+02 Score=23.48 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHH---HHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWF---YSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~---~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 100 (305)
.+|.+.+.. .+.... ...++.++|++...+|-...+- ...++++..|+.++... ..++......+++.++.+
T Consensus 201 ~~s~~~l~~-~~~~~~---~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~ 275 (536)
T PRK10946 201 PRTHNDYYY-SVRRSV---EICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP-DPSATLCFPLIEKHQVNV 275 (536)
T ss_pred EEehHHHHH-HHHHHH---HhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC-CCCHHHHHHHHHHhCCcE
Confidence 378888877 355443 3457888998887766543322 24678888999887654 456777888999999999
Q ss_pred EEEeChH
Q psy2835 101 CVVEDDK 107 (305)
Q Consensus 101 v~~~~~~ 107 (305)
+......
T Consensus 276 ~~~~p~~ 282 (536)
T PRK10946 276 TALVPPA 282 (536)
T ss_pred EEeChHH
Confidence 8887663
No 480
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=23.62 E-value=5.3e+02 Score=22.98 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=20.2
Q ss_pred HHHHHcCCeEEecCCCCCHH--HHHHHHhhCCceEEEEeC
Q psy2835 68 LGAIYAGGFAAGMYTTNSPE--ACLHCLVTSDANICVVED 105 (305)
Q Consensus 68 ~a~~~~G~~~v~i~~~~~~~--~~~~~l~~~~~~~v~~~~ 105 (305)
.+++..|-.++..++.+... -+...+...++++.+++.
T Consensus 97 ~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 97 YTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred HHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence 34555565555555555432 233445566666666654
No 481
>PRK07683 aminotransferase A; Validated
Probab=23.27 E-value=5.1e+02 Score=22.73 Aligned_cols=65 Identities=8% Similarity=-0.067 Sum_probs=28.2
Q ss_pred HHHHHHHH-cCC--CCCCeEEEEecCChhHHH-HHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 37 GLAKAFLK-LGL--ERYHSVCIIGFNAPEWFY-SDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 37 ~la~~L~~-~g~--~~gd~V~i~~~n~~~~~~-~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.+|.++.+ .|+ .+...|. +.+.+.+.+. ++.++...|-.++.-+|.++. ....++..+++++..+
T Consensus 73 ~ia~~l~~~~g~~~~~~~~I~-~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~--~~~~~~~~g~~~~~~~ 141 (387)
T PRK07683 73 AACNFVKDKYDLHYSPESEII-VTIGASEAIDIAFRTILEPGTEVILPAPIYPG--YEPIIRLCGAKPVFID 141 (387)
T ss_pred HHHHHHHHHhCCCCCCCCcEE-EeCChHHHHHHHHHHhCCCCCEEEEcCCCccc--hHHHHHHcCCEEEEee
Confidence 46666643 254 3321332 3333333333 222334445555555555442 2333444556655554
No 482
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=23.26 E-value=5.2e+02 Score=22.74 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=7.7
Q ss_pred HHHHhhCCceEEEEe
Q psy2835 90 LHCLVTSDANICVVE 104 (305)
Q Consensus 90 ~~~l~~~~~~~v~~~ 104 (305)
..+.+..+.+++.++
T Consensus 126 ~~~~~~~g~~~~~v~ 140 (403)
T TIGR01979 126 QLLAERTGATLKFIP 140 (403)
T ss_pred HHHHHhcCcEEEEEe
Confidence 344445566655553
No 483
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=23.26 E-value=4.7e+02 Score=22.23 Aligned_cols=64 Identities=11% Similarity=-0.029 Sum_probs=37.7
Q ss_pred ceeeeccCCccchHHHHHHHHHHHHHHH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCC
Q psy2835 15 VCIIGFNAPEWFYSDLGAIYAGGLAKAF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 85 (305)
Q Consensus 15 ~~~~~~~~~~~Ty~el~~~~~~~la~~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~ 85 (305)
..++......+.|..+.. ++. ++..+ .+.++ .|++.++++.++-.+.- |..+|..-+.+|.+.-
T Consensus 44 PvIlq~s~~~~~~~~~~~-~~~-~~~~~a~~~~V----PValHLDHg~~~e~i~~-ai~~GFtSVM~DgS~l 108 (286)
T PRK12738 44 PVILAGTPGTFKHIALEE-IYA-LCSAYSTTYNM----PLALHLDHHESLDDIRR-KVHAGVRSAMIDGSHF 108 (286)
T ss_pred CEEEEcCcchhhhCCHHH-HHH-HHHHHHHHCCC----CEEEECCCCCCHHHHHH-HHHcCCCeEeecCCCC
Confidence 444444444444544443 222 22222 23344 49999999877664444 6688999999997753
No 484
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=23.04 E-value=4e+02 Score=22.04 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=35.7
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe-EEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF-AAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~-~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.+.+.+..+|++|+|...-..-...+.+| ...|+. ++.++. +. +-..+++..+++.++..
T Consensus 112 al~~~~~~~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~--~~-~r~~~a~~~Ga~~~i~~ 172 (280)
T TIGR03366 112 ALEAAGDLKGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADP--SP-DRRELALSFGATALAEP 172 (280)
T ss_pred HHHhccCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECC--CH-HHHHHHHHcCCcEecCc
Confidence 34556677899999997644444444444 345764 544432 22 33455677777766643
No 485
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=22.99 E-value=2.1e+02 Score=25.26 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=11.6
Q ss_pred CHHHHHHHHhhCCceEEEE
Q psy2835 85 SPEACLHCLVTSDANICVV 103 (305)
Q Consensus 85 ~~~~~~~~l~~~~~~~v~~ 103 (305)
+.+++...+...++++++.
T Consensus 149 d~~~l~~~i~~~~~~~v~~ 167 (402)
T cd00378 149 DYDALEKMALEFKPKLIVA 167 (402)
T ss_pred CHHHHHHHHHhCCCCEEEe
Confidence 5666666665555666665
No 486
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=22.79 E-value=5e+02 Score=22.39 Aligned_cols=57 Identities=9% Similarity=-0.050 Sum_probs=34.8
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
++++|++|+|...-..-.+.+.+ +...|+.++.++.+...++-..++++.+++.+..
T Consensus 169 ~~~~g~~vlI~G~G~vG~~a~q~-ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~ 225 (355)
T cd08230 169 PTWNPRRALVLGAGPIGLLAALL-LRLRGFEVYVLNRRDPPDPKADIVEELGATYVNS 225 (355)
T ss_pred ccCCCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecC
Confidence 46789999999764444444444 4446877666665332233344677888887543
No 487
>PRK08361 aspartate aminotransferase; Provisional
Probab=22.73 E-value=4.9e+02 Score=22.83 Aligned_cols=16 Identities=0% Similarity=0.030 Sum_probs=9.1
Q ss_pred cceEechhHHHHHHHH
Q psy2835 181 KPVMLSHDNITFNAAC 196 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~ 196 (305)
-|..+..+.++..+..
T Consensus 246 iG~~~~~~~~~~~~~~ 261 (391)
T PRK08361 246 LGFVIAPEQVIKDMIK 261 (391)
T ss_pred hhhhccCHHHHHHHHH
Confidence 3566666666655443
No 488
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=22.48 E-value=5.5e+02 Score=22.97 Aligned_cols=38 Identities=3% Similarity=-0.172 Sum_probs=19.9
Q ss_pred HHHHHcCCeEEecCCCCCHH--HHHHHHhhCCceEEEEeC
Q psy2835 68 LGAIYAGGFAAGMYTTNSPE--ACLHCLVTSDANICVVED 105 (305)
Q Consensus 68 ~a~~~~G~~~v~i~~~~~~~--~~~~~l~~~~~~~v~~~~ 105 (305)
.+++..|-.++..+|.+... -+..++...+.+++.++.
T Consensus 93 ~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 93 NALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred HHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 34455566555555665432 234445555666666553
No 489
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=22.47 E-value=3.2e+02 Score=21.79 Aligned_cols=54 Identities=17% Similarity=0.089 Sum_probs=38.4
Q ss_pred cCCCCCCeEEEEecCChh--HHHHHHH--HHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 45 LGLERYHSVCIIGFNAPE--WFYSDLG--AIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~--~~~~~~a--~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
-|+.+|+.+.+..+.+.- .+...++ .+..|-.++-++...+++++...++..+.
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGW 68 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCC
Confidence 488899999999887652 2333333 34558788888888888888877766654
No 490
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=22.45 E-value=4.9e+02 Score=23.26 Aligned_cols=19 Identities=5% Similarity=-0.053 Sum_probs=13.1
Q ss_pred CCCCcceEechhHHHHHHH
Q psy2835 177 EGASKPVMLSHDNITFNAA 195 (305)
Q Consensus 177 TG~pK~v~~s~~~l~~~~~ 195 (305)
.|.-=|.++.+..+...+.
T Consensus 286 ~GlRiG~~i~~~~~~~~~~ 304 (431)
T PRK15481 286 PDLRLAFVASDSATSARLR 304 (431)
T ss_pred CCceeEEEeCCHHHHHHHH
Confidence 5666777788777766554
No 491
>KOG1553|consensus
Probab=22.36 E-value=5.4e+02 Score=22.67 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=49.7
Q ss_pred cCCCCCCcceEechhHHHHHH-HHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHh
Q psy2835 174 SGTEGASKPVMLSHDNITFNA-ACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTL 252 (305)
Q Consensus 174 SGtTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i 252 (305)
.||||.|-.+- ..|-+..+ .-....+++ .+.|+++-.-+. .|+.....+.-+-..+-++.+..++ +-+.-
T Consensus 280 agSTG~P~p~n--~~nA~DaVvQfAI~~Lgf-~~edIilygWSI---GGF~~~waAs~YPdVkavvLDAtFD-DllpL-- 350 (517)
T KOG1553|consen 280 AGSTGLPYPVN--TLNAADAVVQFAIQVLGF-RQEDIILYGWSI---GGFPVAWAASNYPDVKAVVLDATFD-DLLPL-- 350 (517)
T ss_pred cccCCCCCccc--chHHHHHHHHHHHHHcCC-CccceEEEEeec---CCchHHHHhhcCCCceEEEeecchh-hhhhH--
Confidence 49999886532 22222222 224456788 899998887655 3444434555556667777765543 12111
Q ss_pred hhcCCcEEEechHHHHHHHHHHHH
Q psy2835 253 LEVRPHVFLAVPRVWEKIHEKLMA 276 (305)
Q Consensus 253 ~~~~vt~~~~~P~~~~~l~~~~~~ 276 (305)
.+.-.|..+..++++.-.
T Consensus 351 ------Al~rMP~~~~giV~~aiR 368 (517)
T KOG1553|consen 351 ------ALFRMPTFFSGIVEHAIR 368 (517)
T ss_pred ------HhhhchHHHHHHHHHHHH
Confidence 223457777777776433
No 492
>PRK15029 arginine decarboxylase; Provisional
Probab=22.36 E-value=2.9e+02 Score=27.17 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=35.3
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCC---------C-----HHHHHHHHhhC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---------S-----PEACLHCLVTS 96 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~---------~-----~~~~~~~l~~~ 96 (305)
+++||+|. +.+|+-.++.- |+...|+.++-+.|.. + ++.+++.++..
T Consensus 242 ~~~gd~Vl-v~RN~HKSv~~--al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~ 302 (755)
T PRK15029 242 MTDNDVVV-VDRNCHKSIEQ--GLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISES 302 (755)
T ss_pred cCCCCEEE-eecccHHHHHH--HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhC
Confidence 57888654 77787666544 9999999999998764 3 77888887554
No 493
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=22.27 E-value=2.4e+02 Score=22.80 Aligned_cols=37 Identities=8% Similarity=-0.176 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE 62 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~ 62 (305)
=||.++.+| +...-..+......++++|+|++....-
T Consensus 150 ES~~~~~~R-v~~~l~~~~~~~~~~~~~vlvVsHg~vi 186 (228)
T PRK14119 150 ESLKDTLVR-VIPFWTDHISQYLLDGQTVLVSAHGNSI 186 (228)
T ss_pred CCHHHHHHH-HHHHHHHHHHhhccCCCeEEEEeChHHH
Confidence 467888887 5554444433334467788888776543
No 494
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=22.24 E-value=2.1e+02 Score=24.49 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=36.6
Q ss_pred eEEEEecCChhHHHHHHHHHHc-CCeEEecCCCCCHHH----HHHHHhhCCceEEEEeCh
Q psy2835 52 SVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTNSPEA----CLHCLVTSDANICVVEDD 106 (305)
Q Consensus 52 ~V~i~~~n~~~~~~~~~a~~~~-G~~~v~i~~~~~~~~----~~~~l~~~~~~~v~~~~~ 106 (305)
+|.+.+|..++---.+.+++.. |+. ..++.+..+ ..++++..++++++.|+-
T Consensus 98 Vv~vq~P~~p~~~~~Y~~IL~~lgaP---~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~ 154 (302)
T PF05621_consen 98 VVYVQMPPEPDERRFYSAILEALGAP---YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEF 154 (302)
T ss_pred EEEEecCCCCChHHHHHHHHHHhCcc---cCCCCCHHHHHHHHHHHHHHcCCcEEEeech
Confidence 6778898888777777777644 543 333333333 458899999999999974
No 495
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=21.91 E-value=1.3e+02 Score=27.18 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=32.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC---------CCH-----HHHHHHHhhCC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT---------NSP-----EACLHCLVTSD 97 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~---------~~~-----~~~~~~l~~~~ 97 (305)
+++||.| ++-+|+-.++.- |+...|+.++-|+|. .++ +.+++.++...
T Consensus 103 ~~~gd~V-Lv~RN~HkSv~~--alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p 164 (417)
T PF01276_consen 103 CRPGDKV-LVDRNCHKSVYN--ALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHP 164 (417)
T ss_dssp TTTTCEE-EEETT--HHHHH--HHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCT
T ss_pred cCCCCEE-EEcCCcHHHHHH--HHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCc
Confidence 5789975 556666665544 999999999977774 233 78888887643
No 496
>PRK08813 threonine dehydratase; Provisional
Probab=21.89 E-value=5.5e+02 Score=22.53 Aligned_cols=77 Identities=18% Similarity=0.016 Sum_probs=51.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+-||++--. ......+.+.|...+ .+....+..-..+.++|...|..+...=|...+......++..++.++.+
T Consensus 60 tGSfK~RgA---~~~l~~a~~~~~~~~---VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~ 133 (349)
T PRK08813 60 TGSYKVRGA---LNALLAGLERGDERP---VICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQH 133 (349)
T ss_pred cCCCHHHHH---HHHHHHHHHcCCCCe---EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence 445554432 233334445554333 45566677778888889999987776666666667778889999999999
Q ss_pred eCh
Q psy2835 104 EDD 106 (305)
Q Consensus 104 ~~~ 106 (305)
...
T Consensus 134 g~~ 136 (349)
T PRK08813 134 GNS 136 (349)
T ss_pred CCC
Confidence 765
No 497
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.74 E-value=3.8e+02 Score=20.70 Aligned_cols=62 Identities=13% Similarity=0.009 Sum_probs=42.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeE-EEE-ecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHH
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSV-CII-GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 93 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V-~i~-~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l 93 (305)
..+.|.++..|-+ ...| ++||++ +|. ..|+...+-++=++-..|+.++.+.-... ..++.++
T Consensus 91 NDy~yd~vFsRqv-------eA~g-~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~G-G~~~~~~ 154 (176)
T COG0279 91 NDYGYDEVFSRQV-------EALG-QPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDG-GKLAGLL 154 (176)
T ss_pred ccccHHHHHHHHH-------HhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCC-ccccccc
Confidence 4688999987633 3344 789975 444 56788888888888889999998875543 3344433
No 498
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=21.60 E-value=2.3e+02 Score=24.62 Aligned_cols=54 Identities=15% Similarity=-0.053 Sum_probs=27.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC--CceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS--DANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~--~~~~v~~~ 104 (305)
.++||.|.+..+. +.....++...|+.+..++. ...+.+...++.. ...++++.
T Consensus 120 ~~~gd~V~~~~~~---~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~i~~~~~~~~lvi~~ 175 (385)
T PRK05958 120 AGKGDLIVSDKLN---HASLIDGARLSRARVRRYPH-NDVDALEALLAKWRAGRALIVTE 175 (385)
T ss_pred CCCCCEEEEeCcc---CHHHHHHHHhcCCceEEeCC-CCHHHHHHHHHhccCCCeEEEEE
Confidence 4567766654332 22333344455666555542 3566777777653 24445544
No 499
>PRK08637 hypothetical protein; Provisional
Probab=21.55 E-value=4.3e+02 Score=23.23 Aligned_cols=47 Identities=11% Similarity=-0.053 Sum_probs=23.0
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC---CCCCHHHHHHHHh
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY---TTNSPEACLHCLV 94 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~---~~~~~~~~~~~l~ 94 (305)
++||.|++..|.-..+...+........+.+++. .....+++...++
T Consensus 91 ~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~ 140 (388)
T PRK08637 91 DQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQ 140 (388)
T ss_pred CCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHH
Confidence 5677777777654444322222222233344441 1345666666655
No 500
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=21.51 E-value=6.4e+02 Score=23.19 Aligned_cols=82 Identities=9% Similarity=-0.007 Sum_probs=54.3
Q ss_pred ceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchh-------HHHHH
Q psy2835 182 PVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKG-------SLINT 251 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~-------~~~~~ 251 (305)
...+|+..+...+..+... .++ .++|++...++-+.-+ +..+++++..|+.++..+...... .....
T Consensus 27 ~~~~ty~el~~~v~~~a~~L~~~g~-~~gd~V~l~~~~~~~~--~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~ 103 (545)
T PRK07768 27 PVRHTWGEVHERARRIAGGLAAAGV-GPGDAVAVLAGAPVEI--APTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRV 103 (545)
T ss_pred ceEecHHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCCchHH--HHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHH
Confidence 5678999998877665554 467 8899999888776533 334788888998777665432222 22344
Q ss_pred hhhcCCcEEEechHH
Q psy2835 252 LLEVRPHVFLAVPRV 266 (305)
Q Consensus 252 i~~~~vt~~~~~P~~ 266 (305)
+++.++..+......
T Consensus 104 ~~~~~~~~v~~~~~~ 118 (545)
T PRK07768 104 IGMIGAKAVVVGEPF 118 (545)
T ss_pred HHhCCCCEEEecchh
Confidence 666777777665443
Done!