Query psy2835
Match_columns 305
No_of_seqs 146 out of 2099
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 18:07:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v25_A Long-chain-fatty-acid-C 100.0 4.6E-43 1.6E-47 320.3 24.7 287 3-303 22-324 (541)
2 3o83_A Peptide arylation enzym 100.0 3.9E-43 1.3E-47 320.9 23.9 290 3-303 34-339 (544)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.5E-43 8.6E-48 321.8 22.4 286 3-303 29-330 (539)
4 3rix_A Luciferase, luciferin 4 100.0 3E-43 1E-47 322.2 21.8 283 3-290 24-315 (550)
5 3r44_A Fatty acyl COA syntheta 100.0 6.9E-43 2.4E-47 317.4 23.4 284 3-303 20-315 (517)
6 3g7s_A Long-chain-fatty-acid-- 100.0 5.2E-41 1.8E-45 307.3 30.4 269 3-288 23-302 (549)
7 2d1s_A Luciferase, luciferin 4 100.0 4.6E-42 1.6E-46 314.0 23.0 280 4-289 31-316 (548)
8 3ni2_A 4-coumarate:COA ligase; 100.0 1.1E-42 3.8E-47 317.5 17.4 274 3-290 26-305 (536)
9 1ry2_A Acetyl-coenzyme A synth 100.0 7.2E-42 2.5E-46 318.7 20.4 278 3-288 86-390 (663)
10 1pg4_A Acetyl-COA synthetase; 100.0 8.5E-42 2.9E-46 317.9 20.6 279 3-289 80-385 (652)
11 3ivr_A Putative long-chain-fat 100.0 1.2E-40 4.2E-45 302.2 27.6 268 3-287 10-277 (509)
12 2v7b_A Benzoate-coenzyme A lig 100.0 1.2E-41 4.2E-46 310.2 19.7 262 3-274 28-292 (529)
13 3etc_A AMP-binding protein; ad 100.0 1.5E-41 5.2E-46 312.2 20.3 295 3-303 60-373 (580)
14 3c5e_A Acyl-coenzyme A synthet 100.0 5.2E-41 1.8E-45 308.2 22.4 288 3-303 42-354 (570)
15 3rg2_A Enterobactin synthase c 100.0 8.5E-41 2.9E-45 309.7 23.6 286 3-303 31-334 (617)
16 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.3E-41 1.5E-45 304.8 20.4 265 3-289 6-279 (504)
17 4fuq_A Malonyl COA synthetase; 100.0 8.3E-42 2.9E-46 309.3 15.6 283 3-303 4-300 (503)
18 3fce_A D-alanine--poly(phospho 100.0 3.9E-41 1.3E-45 305.7 18.2 262 3-289 5-268 (512)
19 3e7w_A D-alanine--poly(phospho 100.0 1.7E-40 5.8E-45 301.4 18.2 259 3-288 5-266 (511)
20 3t5a_A Long-chain-fatty-acid-- 100.0 3.7E-40 1.3E-44 297.1 20.1 265 3-290 28-319 (480)
21 3ipl_A 2-succinylbenzoate--COA 100.0 5.1E-39 1.7E-43 291.1 26.6 288 3-303 5-305 (501)
22 3tsy_A Fusion protein 4-coumar 100.0 2.6E-40 8.9E-45 321.0 17.0 279 3-290 65-352 (979)
23 3l8c_A D-alanine--poly(phospho 100.0 1.9E-39 6.4E-44 295.3 17.8 258 3-288 8-270 (521)
24 4gr5_A Non-ribosomal peptide s 100.0 6.1E-39 2.1E-43 294.8 21.4 253 3-288 79-332 (570)
25 3kxw_A Saframycin MX1 syntheta 100.0 5.3E-39 1.8E-43 296.6 20.6 267 3-288 15-295 (590)
26 3gqw_A Fatty acid AMP ligase; 100.0 1.4E-38 4.9E-43 292.9 23.2 264 3-288 25-305 (576)
27 4dg8_A PA1221; ANL superfamily 100.0 2.1E-38 7.2E-43 293.1 23.2 252 3-289 31-283 (620)
28 1amu_A GRSA, gramicidin synthe 100.0 2.1E-37 7.2E-42 283.8 24.8 256 3-289 43-300 (563)
29 3ite_A SIDN siderophore synthe 100.0 3.9E-37 1.3E-41 282.5 17.5 260 3-289 24-301 (562)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 2.9E-38 1E-42 286.1 8.9 232 5-273 28-260 (505)
31 2vsq_A Surfactin synthetase su 100.0 4.8E-35 1.7E-39 290.9 22.5 245 3-273 468-714 (1304)
32 4gs5_A Acyl-COA synthetase (AM 99.9 2.6E-23 9E-28 179.9 4.2 135 163-303 35-179 (358)
33 3qov_A Phenylacetate-coenzyme 99.8 9.7E-20 3.3E-24 161.8 7.3 139 163-303 83-238 (436)
34 2y27_A Phenylacetate-coenzyme 99.8 1E-18 3.5E-23 155.3 8.2 139 162-303 87-242 (437)
35 2y4o_A Phenylacetate-coenzyme 99.7 1.3E-18 4.4E-23 154.9 7.6 139 162-303 89-244 (443)
36 3hgu_A EHPF; phenazine, antibi 99.7 4E-19 1.4E-23 154.4 2.5 124 162-289 88-238 (369)
37 2y27_A Phenylacetate-coenzyme 94.3 0.76 2.6E-05 40.0 12.9 82 24-107 109-192 (437)
38 3qov_A Phenylacetate-coenzyme 94.3 0.6 2.1E-05 40.6 12.2 104 24-130 105-216 (436)
39 2y4o_A Phenylacetate-coenzyme 94.2 0.73 2.5E-05 40.2 12.6 82 24-107 111-194 (443)
40 3ni2_A 4-coumarate:COA ligase; 91.1 4.4 0.00015 36.2 13.4 101 162-272 34-137 (536)
41 3rix_A Luciferase, luciferin 4 90.8 1.8 6.1E-05 38.9 10.6 104 163-273 33-139 (550)
42 3g7s_A Long-chain-fatty-acid-- 90.4 4.8 0.00016 36.1 13.1 107 162-272 31-140 (549)
43 3ivr_A Putative long-chain-fat 89.9 3.4 0.00012 36.6 11.6 99 162-272 18-119 (509)
44 1v25_A Long-chain-fatty-acid-C 89.2 6.1 0.00021 35.3 12.7 101 162-270 30-133 (541)
45 3c5e_A Acyl-coenzyme A synthet 88.3 7.3 0.00025 35.1 12.6 101 163-270 56-160 (570)
46 1t5h_X 4-chlorobenzoyl COA lig 88.0 6.9 0.00024 34.5 12.2 99 162-270 14-117 (504)
47 3r44_A Fatty acyl COA syntheta 87.7 7.8 0.00027 34.4 12.3 100 162-271 28-130 (517)
48 3t5a_A Long-chain-fatty-acid-- 87.6 10 0.00034 33.1 12.9 110 161-272 35-148 (480)
49 1amu_A GRSA, gramicidin synthe 87.2 8.3 0.00029 34.7 12.3 95 162-268 51-148 (563)
50 3ipl_A 2-succinylbenzoate--COA 87.0 15 0.00052 32.2 13.8 99 24-128 182-282 (501)
51 4fuq_A Malonyl COA synthetase; 86.9 8.3 0.00028 34.1 12.0 99 163-270 13-114 (503)
52 3etc_A AMP-binding protein; ad 86.4 7.7 0.00026 35.1 11.7 98 161-265 67-167 (580)
53 2v7b_A Benzoate-coenzyme A lig 85.1 6.3 0.00022 35.1 10.3 97 163-271 36-135 (529)
54 3tsy_A Fusion protein 4-coumar 85.1 10 0.00035 36.7 12.4 99 162-270 73-174 (979)
55 1ry2_A Acetyl-coenzyme A synth 85.0 12 0.00041 34.5 12.4 98 162-265 94-195 (663)
56 4gr5_A Non-ribosomal peptide s 84.5 12 0.00041 33.6 12.0 93 162-266 87-182 (570)
57 1pg4_A Acetyl-COA synthetase; 83.9 15 0.0005 33.8 12.4 96 163-264 89-187 (652)
58 3kxw_A Saframycin MX1 syntheta 83.8 22 0.00076 31.9 13.5 103 161-271 22-130 (590)
59 3o83_A Peptide arylation enzym 83.7 12 0.00042 33.4 11.6 93 161-265 41-136 (544)
60 2d1s_A Luciferase, luciferin 4 82.8 6.5 0.00022 35.2 9.5 98 165-272 40-140 (548)
61 3hgu_A EHPF; phenazine, antibi 82.5 3.7 0.00013 34.6 7.4 81 24-107 110-215 (369)
62 3tbh_A O-acetyl serine sulfhyd 81.3 13 0.00043 31.1 10.0 67 40-106 60-127 (334)
63 1mdb_A 2,3-dihydroxybenzoate-A 80.5 18 0.0006 32.3 11.4 90 163-264 38-130 (539)
64 3l8c_A D-alanine--poly(phospho 79.2 16 0.00054 32.3 10.6 91 162-264 16-109 (521)
65 3fce_A D-alanine--poly(phospho 79.1 16 0.00055 32.2 10.6 90 162-263 13-105 (512)
66 4b2g_A GH3-1 auxin conjugating 78.6 0.88 3E-05 41.4 2.1 31 163-193 97-128 (609)
67 3vc3_A Beta-cyanoalnine syntha 76.0 20 0.0007 29.9 9.7 67 40-106 75-142 (344)
68 3gqw_A Fatty acid AMP ligase; 75.1 26 0.00088 31.3 10.9 86 182-270 47-142 (576)
69 4eez_A Alcohol dehydrogenase 1 74.4 14 0.00047 30.7 8.4 78 24-105 136-216 (348)
70 4epl_A Jasmonic acid-amido syn 74.3 1.2 4.2E-05 40.2 1.8 30 163-192 96-126 (581)
71 4eql_A 4-substituted benzoates 73.8 1.6 5.3E-05 39.6 2.4 31 163-193 91-122 (581)
72 4dg8_A PA1221; ANL superfamily 73.1 35 0.0012 31.1 11.3 91 161-263 38-131 (620)
73 3rg2_A Enterobactin synthase c 72.1 24 0.00082 32.0 10.0 90 164-265 39-131 (617)
74 3e7w_A D-alanine--poly(phospho 69.8 38 0.0013 29.8 10.6 90 162-263 13-106 (511)
75 4aec_A Cysteine synthase, mito 69.7 37 0.0013 29.4 10.0 66 40-105 163-229 (430)
76 3jv7_A ADH-A; dehydrogenase, n 67.8 27 0.00093 28.9 8.7 86 25-114 143-233 (345)
77 3ite_A SIDN siderophore synthe 67.3 68 0.0023 28.5 11.8 102 161-265 31-135 (562)
78 2q3b_A Cysteine synthase A; py 67.1 50 0.0017 26.9 10.1 79 24-106 43-122 (313)
79 4gs5_A Acyl-COA synthetase (AM 66.6 43 0.0015 27.9 9.8 96 24-127 56-155 (358)
80 3dzz_A Putative pyridoxal 5'-p 65.3 25 0.00087 29.3 8.2 56 47-105 106-168 (391)
81 3nyq_A Malonyl-COA ligase; A/B 64.4 28 0.00097 30.6 8.6 78 183-265 47-124 (505)
82 1z7w_A Cysteine synthase; tran 63.1 62 0.0021 26.5 10.2 66 41-106 56-122 (322)
83 2egu_A Cysteine synthase; O-ac 62.5 60 0.002 26.4 9.7 79 24-106 41-120 (308)
84 3ju7_A Putative PLP-dependent 61.4 27 0.00093 29.4 7.6 61 42-105 70-137 (377)
85 4dq6_A Putative pyridoxal phos 60.5 29 0.001 28.9 7.7 52 48-104 112-171 (391)
86 4h1h_A LMO1638 protein; MCCF-l 59.5 37 0.0013 28.1 7.8 60 46-105 8-86 (327)
87 3dwg_A Cysteine synthase B; su 59.2 64 0.0022 26.5 9.3 65 40-105 62-127 (325)
88 3sr3_A Microcin immunity prote 58.9 38 0.0013 28.2 7.8 60 46-105 9-87 (336)
89 3b8x_A WBDK, pyridoxamine 5-ph 58.6 37 0.0013 28.4 8.0 69 46-118 76-153 (390)
90 2jwk_A Protein TOLR; periplasm 57.3 23 0.00079 21.6 4.9 31 23-60 25-55 (74)
91 1eg5_A Aminotransferase; PLP-d 56.9 55 0.0019 27.0 8.8 56 48-104 87-146 (384)
92 3tla_A MCCF; serine protease, 56.6 42 0.0014 28.4 7.8 61 45-105 38-117 (371)
93 1zsy_A Mitochondrial 2-enoyl t 55.4 39 0.0013 28.1 7.5 79 24-104 139-223 (357)
94 4e5s_A MCCFLIKE protein (BA_56 55.4 47 0.0016 27.6 7.8 60 46-105 8-86 (331)
95 3ri6_A O-acetylhomoserine sulf 54.6 73 0.0025 27.4 9.3 53 54-106 100-155 (430)
96 3euc_A Histidinol-phosphate am 54.3 56 0.0019 26.9 8.4 55 47-104 106-164 (367)
97 2pqm_A Cysteine synthase; OASS 52.8 95 0.0032 25.7 9.4 79 24-106 54-133 (343)
98 1h2b_A Alcohol dehydrogenase; 52.4 47 0.0016 27.7 7.6 63 41-106 176-240 (359)
99 3s2e_A Zinc-containing alcohol 52.1 51 0.0018 27.1 7.7 77 24-105 139-218 (340)
100 2vsq_A Surfactin synthetase su 51.6 72 0.0025 32.0 9.8 92 162-265 476-570 (1304)
101 1o69_A Aminotransferase; struc 51.5 75 0.0026 26.6 8.8 58 45-105 67-130 (394)
102 1pl8_A Human sorbitol dehydrog 49.7 1.1E+02 0.0038 25.3 10.2 76 24-105 145-224 (356)
103 1y7l_A O-acetylserine sulfhydr 49.3 1.1E+02 0.0036 25.0 9.6 69 37-106 48-117 (316)
104 1c7n_A Cystalysin; transferase 48.9 72 0.0025 26.6 8.3 24 176-199 242-266 (399)
105 2e7j_A SEP-tRNA:Cys-tRNA synth 48.7 1.1E+02 0.0038 25.0 9.7 56 47-105 90-155 (371)
106 3ijw_A Aminoglycoside N3-acety 48.4 15 0.00051 29.5 3.5 24 37-60 19-42 (268)
107 1mdo_A ARNB aminotransferase; 47.3 67 0.0023 26.7 7.8 55 46-104 75-134 (393)
108 3fpc_A NADP-dependent alcohol 46.9 95 0.0033 25.6 8.6 77 24-105 139-219 (352)
109 3tqh_A Quinone oxidoreductase; 46.4 55 0.0019 26.7 6.9 77 24-106 125-205 (321)
110 2nyg_A YOKD protein; PFAM02522 46.3 17 0.00057 29.4 3.5 22 38-59 18-39 (273)
111 3a2b_A Serine palmitoyltransfe 46.2 1.3E+02 0.0044 25.0 9.8 55 47-105 124-181 (398)
112 3t18_A Aminotransferase class 45.9 1.2E+02 0.004 25.5 9.2 55 47-104 122-185 (413)
113 3rq1_A Aminotransferase class 45.8 1.3E+02 0.0043 25.3 9.4 46 47-95 123-173 (418)
114 3sma_A FRBF; N-acetyl transfer 45.6 17 0.0006 29.4 3.5 31 22-60 19-49 (286)
115 3ist_A Glutamate racemase; str 44.6 1.2E+02 0.0041 24.2 8.4 72 3-79 19-96 (269)
116 1elu_A L-cysteine/L-cystine C- 44.0 94 0.0032 25.6 8.2 9 182-190 229-237 (390)
117 2z61_A Probable aspartate amin 43.8 1.2E+02 0.0041 24.9 8.8 22 178-199 228-249 (370)
118 4a2c_A Galactitol-1-phosphate 43.8 1.3E+02 0.0045 24.5 12.2 79 24-106 134-214 (346)
119 4eye_A Probable oxidoreductase 43.7 99 0.0034 25.4 8.2 79 23-105 130-212 (342)
120 3isl_A Purine catabolism prote 43.5 1E+02 0.0036 25.7 8.5 13 182-194 207-219 (416)
121 3ffh_A Histidinol-phosphate am 43.5 1.3E+02 0.0046 24.5 10.4 80 47-131 105-195 (363)
122 3l8a_A METC, putative aminotra 43.4 55 0.0019 27.7 6.7 54 48-104 141-201 (421)
123 3two_A Mannitol dehydrogenase; 43.0 89 0.0031 25.7 7.8 74 24-102 149-225 (348)
124 2z9v_A Aspartate aminotransfer 42.8 1E+02 0.0036 25.4 8.3 58 47-105 80-142 (392)
125 4ej6_A Putative zinc-binding d 42.6 83 0.0028 26.3 7.6 60 41-104 174-234 (370)
126 3l6b_A Serine racemase; pyrido 42.5 78 0.0027 26.3 7.3 53 54-106 79-131 (346)
127 2c81_A Glutamine-2-deoxy-scyll 42.2 76 0.0026 26.8 7.4 55 46-104 78-137 (418)
128 3op7_A Aminotransferase class 41.9 78 0.0027 26.1 7.3 54 47-104 102-161 (375)
129 4dvj_A Putative zinc-dependent 41.7 1.2E+02 0.004 25.3 8.3 79 24-106 138-226 (363)
130 4hvk_A Probable cysteine desul 41.3 62 0.0021 26.6 6.6 56 48-104 86-145 (382)
131 2v03_A Cysteine synthase B; py 41.2 1.4E+02 0.0048 24.1 10.0 78 24-105 37-115 (303)
132 2dph_A Formaldehyde dismutase; 41.0 1E+02 0.0035 26.0 8.0 55 41-99 177-232 (398)
133 1t3i_A Probable cysteine desul 40.7 1.1E+02 0.0036 25.6 8.1 15 47-61 115-129 (420)
134 1b5p_A Protein (aspartate amin 40.0 1.1E+02 0.0038 25.3 8.1 20 178-197 240-259 (385)
135 3nvb_A Uncharacterized protein 39.8 1.7E+02 0.006 24.8 9.8 89 28-123 255-352 (387)
136 3ndn_A O-succinylhomoserine su 39.7 1.5E+02 0.005 25.2 8.8 37 70-106 116-154 (414)
137 4eb5_A Probable cysteine desul 39.7 62 0.0021 26.7 6.4 8 96-103 111-118 (382)
138 2ch1_A 3-hydroxykynurenine tra 39.7 1.4E+02 0.0048 24.6 8.7 20 84-103 130-149 (396)
139 3ly1_A Putative histidinol-pho 39.4 1.5E+02 0.0052 24.0 12.0 81 47-131 89-181 (354)
140 1xng_A NH(3)-dependent NAD(+) 39.3 1.4E+02 0.0047 23.7 8.0 79 25-106 3-88 (268)
141 4eu1_A Mitochondrial aspartate 39.3 74 0.0025 26.7 6.9 53 47-102 128-188 (409)
142 3kax_A Aminotransferase, class 39.3 1.5E+02 0.005 24.3 8.7 54 47-104 103-163 (383)
143 1u08_A Hypothetical aminotrans 39.2 1.6E+02 0.0055 24.2 9.7 23 176-198 240-262 (386)
144 3p52_A NH(3)-dependent NAD(+) 39.2 1.4E+02 0.0048 23.5 10.9 80 24-106 3-89 (249)
145 3kki_A CAI-1 autoinducer synth 39.1 61 0.0021 27.3 6.3 55 47-105 140-194 (409)
146 1fg7_A Histidinol phosphate am 38.9 1.5E+02 0.005 24.3 8.5 52 48-104 97-153 (356)
147 2pfu_A Biopolymer transport EX 38.8 41 0.0014 21.8 4.1 52 22-80 36-90 (99)
148 1d2f_A MALY protein; aminotran 38.7 1.7E+02 0.0057 24.2 9.3 53 48-103 109-168 (390)
149 1e3j_A NADP(H)-dependent ketos 38.6 1.3E+02 0.0045 24.7 8.2 75 24-104 142-219 (352)
150 1kol_A Formaldehyde dehydrogen 38.5 1.6E+02 0.0056 24.7 8.9 56 42-101 178-234 (398)
151 3zrp_A Serine-pyruvate aminotr 38.4 1.3E+02 0.0045 24.6 8.3 58 47-105 74-135 (384)
152 3cq5_A Histidinol-phosphate am 38.4 1.6E+02 0.0055 24.1 8.8 53 48-103 114-170 (369)
153 1e5e_A MGL, methionine gamma-l 38.1 1.5E+02 0.0052 24.9 8.7 11 182-192 220-230 (404)
154 2jtq_A Phage shock protein E; 38.1 71 0.0024 19.8 5.8 45 24-76 23-67 (85)
155 3cai_A Possible aminotransfera 38.0 98 0.0033 25.8 7.4 8 183-190 236-243 (406)
156 3ht4_A Aluminum resistance pro 38.0 48 0.0016 28.6 5.4 58 47-105 104-173 (431)
157 1o58_A O-acetylserine sulfhydr 37.6 1.6E+02 0.0055 23.7 9.5 77 24-106 43-120 (303)
158 3frk_A QDTB; aminotransferase, 37.5 65 0.0022 26.7 6.1 59 43-105 69-132 (373)
159 3uhf_A Glutamate racemase; str 37.2 1E+02 0.0035 24.7 6.9 57 3-64 38-100 (274)
160 1b9h_A AHBA synthase, protein 37.1 1.2E+02 0.0042 25.0 7.9 53 46-102 74-131 (388)
161 3kgw_A Alanine-glyoxylate amin 37.0 1.2E+02 0.0041 25.0 7.8 14 181-194 218-231 (393)
162 3krt_A Crotonyl COA reductase; 37.0 84 0.0029 27.2 6.9 57 45-104 224-280 (456)
163 1y80_A Predicted cobalamin bin 36.8 1.3E+02 0.0046 22.6 7.8 54 52-105 90-147 (210)
164 1ve1_A O-acetylserine sulfhydr 36.6 1.7E+02 0.0057 23.6 9.9 80 24-106 36-117 (304)
165 2duw_A Putative COA-binding pr 36.6 70 0.0024 22.7 5.3 31 69-99 89-119 (145)
166 1uuf_A YAHK, zinc-type alcohol 36.5 60 0.002 27.2 5.7 77 25-106 168-247 (369)
167 3ip1_A Alcohol dehydrogenase, 36.5 1.9E+02 0.0064 24.4 8.9 56 46-105 210-266 (404)
168 1wxi_A NH(3)-dependent NAD(+) 36.4 1.6E+02 0.0056 23.5 10.6 81 23-106 15-112 (275)
169 1zl0_A Hypothetical protein PA 36.0 1.3E+02 0.0045 24.6 7.4 60 46-105 13-88 (311)
170 3a2k_A TRNA(Ile)-lysidine synt 35.9 2.1E+02 0.0071 24.9 9.2 69 37-105 4-86 (464)
171 2h6e_A ADH-4, D-arabinose 1-de 35.9 1E+02 0.0034 25.4 7.0 54 46-103 168-222 (344)
172 1kmj_A Selenocysteine lyase; p 35.9 1.1E+02 0.0037 25.4 7.4 57 47-104 110-171 (406)
173 3nnk_A Ureidoglycine-glyoxylat 35.8 1.6E+02 0.0056 24.4 8.5 13 182-194 209-221 (411)
174 2cb1_A O-acetyl homoserine sul 35.7 1.4E+02 0.0047 25.2 8.0 13 93-105 116-128 (412)
175 3lvm_A Cysteine desulfurase; s 35.6 1.6E+02 0.0054 24.6 8.4 54 49-103 112-169 (423)
176 1j0a_A 1-aminocyclopropane-1-c 35.4 1E+02 0.0035 25.2 6.9 56 51-106 71-128 (325)
177 3f9t_A TDC, L-tyrosine decarbo 35.4 1.8E+02 0.0063 23.8 8.8 11 85-95 159-169 (397)
178 4h27_A L-serine dehydratase/L- 35.3 63 0.0022 27.1 5.6 54 53-106 95-148 (364)
179 1rjw_A ADH-HT, alcohol dehydro 35.3 1.5E+02 0.0052 24.2 8.0 59 41-103 156-214 (339)
180 1p0f_A NADP-dependent alcohol 34.8 1.1E+02 0.0039 25.4 7.2 57 44-104 186-243 (373)
181 1vjo_A Alanine--glyoxylate ami 34.3 1.9E+02 0.0066 23.8 8.7 13 182-194 230-242 (393)
182 1gu7_A Enoyl-[acyl-carrier-pro 34.2 88 0.003 25.9 6.4 79 24-104 138-223 (364)
183 2rkb_A Serine dehydratase-like 34.2 73 0.0025 26.0 5.8 53 54-106 57-109 (318)
184 1oft_A SULA, hypothetical prot 34.1 1.4E+02 0.0046 21.8 6.5 16 89-104 117-132 (161)
185 3ppl_A Aspartate aminotransfer 33.9 2.1E+02 0.0072 24.0 12.7 52 50-104 133-187 (427)
186 2bkw_A Alanine-glyoxylate amin 33.8 1.9E+02 0.0067 23.6 8.8 56 48-104 84-144 (385)
187 3uko_A Alcohol dehydrogenase c 33.7 1.2E+02 0.0041 25.4 7.2 76 24-104 165-245 (378)
188 1jbq_A B, cystathionine beta-s 33.7 2.2E+02 0.0076 24.5 8.9 64 41-105 151-215 (435)
189 3aey_A Threonine synthase; PLP 33.6 76 0.0026 26.4 5.8 54 53-106 79-133 (351)
190 3g0t_A Putative aminotransfera 33.5 50 0.0017 28.0 4.9 53 48-103 129-188 (437)
191 2oga_A Transaminase; PLP-depen 33.3 1.5E+02 0.0051 24.7 7.8 55 46-104 99-158 (399)
192 3gms_A Putative NADPH:quinone 33.1 1.7E+02 0.0058 23.9 8.0 77 24-104 116-196 (340)
193 1ofu_X SULA, hypothetical prot 33.0 1.2E+02 0.004 20.8 6.6 35 41-75 49-83 (119)
194 3pc3_A CG1753, isoform A; CBS, 32.9 2.1E+02 0.007 25.3 8.8 64 41-105 103-167 (527)
195 2cf5_A Atccad5, CAD, cinnamyl 32.8 1E+02 0.0035 25.6 6.5 63 41-106 171-234 (357)
196 3i16_A Aluminum resistance pro 32.7 76 0.0026 27.3 5.8 34 72-105 146-184 (427)
197 3tcm_A Alanine aminotransferas 32.5 91 0.0031 27.3 6.5 53 48-103 180-243 (500)
198 3nyt_A Aminotransferase WBPE; 32.3 62 0.0021 26.7 5.2 59 43-105 68-131 (367)
199 2huf_A Alanine glyoxylate amin 31.9 2.1E+02 0.0073 23.5 8.7 14 182-195 215-228 (393)
200 3uog_A Alcohol dehydrogenase; 31.9 1.1E+02 0.0038 25.3 6.7 76 23-103 160-239 (363)
201 1kqp_A NAD+ synthase, NH(3)-de 31.8 1.9E+02 0.0066 22.9 10.2 81 23-106 14-108 (271)
202 1f8f_A Benzyl alcohol dehydrog 31.6 1.6E+02 0.0054 24.4 7.6 59 43-105 184-243 (371)
203 2fnu_A Aminotransferase; prote 31.6 1.1E+02 0.0037 25.1 6.6 53 47-103 71-127 (375)
204 4dup_A Quinone oxidoreductase; 31.4 2.2E+02 0.0075 23.4 9.1 76 24-104 139-219 (353)
205 2rfv_A Methionine gamma-lyase; 31.3 2.3E+02 0.0078 23.6 8.7 11 182-192 221-231 (398)
206 3hvy_A Cystathionine beta-lyas 31.1 1.6E+02 0.0054 25.3 7.6 34 72-105 147-184 (427)
207 1y81_A Conserved hypothetical 31.1 82 0.0028 22.1 4.9 48 51-99 71-118 (138)
208 2ctz_A O-acetyl-L-homoserine s 30.7 2.2E+02 0.0076 24.0 8.5 10 94-103 119-128 (421)
209 4a0s_A Octenoyl-COA reductase/ 30.5 1.3E+02 0.0043 25.9 7.0 77 24-104 190-272 (447)
210 1p5j_A L-serine dehydratase; l 30.4 88 0.003 26.3 5.7 54 53-106 95-148 (372)
211 2l66_A SSO7C4, transcriptional 30.0 70 0.0024 18.1 3.6 19 42-60 21-39 (53)
212 2e18_A NH(3)-dependent NAD(+) 29.9 2E+02 0.0068 22.5 8.7 75 25-106 4-84 (257)
213 3goh_A Alcohol dehydrogenase, 29.9 1.2E+02 0.0043 24.4 6.5 73 24-102 115-190 (315)
214 1e3i_A Alcohol dehydrogenase, 29.7 1.4E+02 0.0048 24.9 6.9 76 24-104 167-247 (376)
215 2fsx_A RV0390, COG0607: rhodan 29.5 75 0.0026 22.4 4.5 47 37-83 67-114 (148)
216 3n75_A LDC, lysine decarboxyla 29.4 1.6E+02 0.0053 27.5 7.5 47 47-96 232-292 (715)
217 2qr3_A Two-component system re 29.3 1.3E+02 0.0044 20.1 7.8 20 85-104 35-54 (140)
218 2d1f_A Threonine synthase; ami 29.2 1E+02 0.0035 25.7 5.9 54 53-106 87-141 (360)
219 1j32_A Aspartate aminotransfer 28.7 2.4E+02 0.0083 23.1 9.3 21 177-197 242-262 (388)
220 1o4s_A Aspartate aminotransfer 28.5 2.4E+02 0.0083 23.2 8.3 22 177-198 251-272 (389)
221 1wy5_A TILS, hypothetical UPF0 28.3 2.4E+02 0.0082 22.9 9.5 71 35-105 8-92 (317)
222 1jvb_A NAD(H)-dependent alcoho 28.2 1.6E+02 0.0055 24.1 7.0 60 41-103 162-222 (347)
223 2dr1_A PH1308 protein, 386AA l 28.1 2.4E+02 0.0084 22.9 9.0 14 181-194 216-229 (386)
224 4b7c_A Probable oxidoreductase 28.1 1.7E+02 0.0057 23.9 7.0 60 43-104 143-202 (336)
225 1e0c_A Rhodanese, sulfurtransf 28.0 1.1E+02 0.0037 24.1 5.7 41 36-76 67-108 (271)
226 2aeu_A Hypothetical protein MJ 27.8 1.2E+02 0.0042 25.1 6.3 21 178-198 212-232 (374)
227 2fzw_A Alcohol dehydrogenase c 27.8 1.5E+02 0.0051 24.6 6.8 76 24-104 162-242 (373)
228 3out_A Glutamate racemase; str 27.7 2.3E+02 0.0079 22.5 7.8 56 3-63 21-82 (268)
229 3ecd_A Serine hydroxymethyltra 27.7 1.6E+02 0.0055 24.5 7.1 58 47-104 115-179 (425)
230 3piu_A 1-aminocyclopropane-1-c 27.7 70 0.0024 27.2 4.8 54 48-104 133-198 (435)
231 3cog_A Cystathionine gamma-lya 27.6 1.4E+02 0.0047 25.2 6.6 16 182-197 224-240 (403)
232 3uwc_A Nucleotide-sugar aminot 27.5 1.1E+02 0.0037 25.1 5.9 58 43-104 71-132 (374)
233 3fvs_A Kynurenine--oxoglutarat 27.5 2.7E+02 0.0091 23.2 10.6 24 175-198 250-273 (422)
234 2zsj_A Threonine synthase; PLP 27.4 90 0.0031 25.9 5.3 54 53-106 81-135 (352)
235 2jhf_A Alcohol dehydrogenase E 27.3 1.6E+02 0.0055 24.4 6.9 76 24-104 163-243 (374)
236 1yqd_A Sinapyl alcohol dehydro 27.2 2E+02 0.007 23.8 7.5 62 41-105 178-240 (366)
237 1urh_A 3-mercaptopyruvate sulf 27.1 1.2E+02 0.004 24.1 5.8 40 36-75 72-112 (280)
238 2d59_A Hypothetical protein PH 27.1 1.3E+02 0.0046 21.1 5.5 39 61-99 88-126 (144)
239 3jzl_A Putative cystathionine 27.1 1.6E+02 0.0055 25.0 6.9 16 182-197 238-253 (409)
240 2yxb_A Coenzyme B12-dependent 26.1 1.3E+02 0.0045 21.7 5.4 37 69-105 41-77 (161)
241 3eod_A Protein HNR; response r 26.0 1.4E+02 0.0049 19.6 9.6 74 50-126 7-84 (130)
242 3txv_A Probable tagatose 6-pho 25.8 1.4E+02 0.0048 25.9 6.1 54 27-85 68-135 (450)
243 3qwb_A Probable quinone oxidor 25.6 2.7E+02 0.0092 22.6 10.6 57 45-105 144-201 (334)
244 1vj0_A Alcohol dehydrogenase, 25.6 2.9E+02 0.0099 23.0 10.4 77 24-105 167-248 (380)
245 3nul_A Profilin I; cytoskeleto 25.4 85 0.0029 21.9 4.0 27 20-47 104-130 (130)
246 2cvh_A DNA repair and recombin 25.4 1.7E+02 0.0059 21.6 6.3 51 46-97 16-70 (220)
247 1acf_A Profilin I; protein bin 25.3 78 0.0027 21.8 3.8 27 20-47 99-125 (125)
248 3ia7_A CALG4; glycosysltransfe 25.3 2.1E+02 0.0071 23.6 7.3 68 26-104 14-109 (402)
249 1cdo_A Alcohol dehydrogenase; 25.3 2.5E+02 0.0086 23.2 7.8 76 24-104 164-244 (374)
250 1fc4_A 2-amino-3-ketobutyrate 25.2 2E+02 0.0069 23.7 7.2 53 48-104 127-184 (401)
251 3q4g_A NH(3)-dependent NAD(+) 25.2 2.6E+02 0.0091 22.3 10.8 81 23-106 16-112 (279)
252 1xi9_A Putative transaminase; 24.9 2.4E+02 0.0082 23.4 7.6 21 177-197 250-276 (406)
253 1pff_A Methionine gamma-lyase; 24.7 2.7E+02 0.0091 22.2 7.9 57 47-105 34-91 (331)
254 1ypr_A Profilin; actin-binding 24.7 91 0.0031 21.5 4.0 27 20-47 99-125 (125)
255 3ss7_X D-serine dehydratase; t 24.7 3.4E+02 0.011 23.4 9.1 55 52-106 161-215 (442)
256 1jg8_A L-ALLO-threonine aldola 24.4 70 0.0024 26.0 4.1 20 178-197 206-226 (347)
257 4a27_A Synaptic vesicle membra 24.4 2.1E+02 0.0072 23.4 7.0 85 24-114 114-203 (349)
258 3nra_A Aspartate aminotransfer 24.4 3E+02 0.01 22.7 9.2 53 47-103 123-185 (407)
259 3tqx_A 2-amino-3-ketobutyrate 24.3 1.6E+02 0.0056 24.2 6.4 55 47-105 124-183 (399)
260 3jx9_A Putative phosphoheptose 24.2 1E+02 0.0035 22.7 4.4 39 44-82 72-112 (170)
261 3qhx_A Cystathionine gamma-syn 24.0 3E+02 0.01 22.9 8.1 61 55-116 85-148 (392)
262 2gzm_A Glutamate racemase; enz 23.9 2.7E+02 0.0091 22.0 8.2 73 3-80 17-95 (267)
263 1yfb_A Transition state regula 23.9 91 0.0031 18.3 3.3 18 43-60 32-49 (59)
264 2qxy_A Response regulator; reg 23.6 1.7E+02 0.0058 19.6 9.2 72 52-126 6-80 (142)
265 3d9y_A Profilin; yeast, actin- 23.5 85 0.0029 21.7 3.7 26 21-47 102-127 (127)
266 2w8t_A SPT, serine palmitoyltr 23.5 3.3E+02 0.011 22.9 9.5 55 47-105 145-202 (427)
267 3bb8_A CDP-4-keto-6-deoxy-D-gl 23.5 2.1E+02 0.0071 24.2 7.0 53 47-103 107-164 (437)
268 3dr4_A Putative perosamine syn 23.4 1.3E+02 0.0045 24.9 5.7 55 46-104 92-151 (391)
269 2bwn_A 5-aminolevulinate synth 23.4 2.5E+02 0.0087 23.2 7.5 14 182-195 255-268 (401)
270 1iay_A ACC synthase 2, 1-amino 23.3 2E+02 0.0067 24.2 6.8 55 48-104 130-195 (428)
271 3ff4_A Uncharacterized protein 23.0 1.1E+02 0.0039 20.9 4.2 49 53-101 61-109 (122)
272 1toa_A Tromp-1, protein (perip 22.9 1.7E+02 0.0057 23.9 6.0 68 47-116 193-265 (313)
273 2d8a_A PH0655, probable L-thre 22.9 3.1E+02 0.011 22.3 8.0 74 24-104 142-219 (348)
274 4d9i_A Diaminopropionate ammon 22.8 1.9E+02 0.0066 24.4 6.6 54 53-106 114-167 (398)
275 2ehv_A Hypothetical protein PH 22.8 1.4E+02 0.0047 22.8 5.4 50 46-95 26-80 (251)
276 3e19_A FEOA; transcriptional r 22.7 87 0.003 19.2 3.3 22 37-58 26-47 (77)
277 1e0c_A Rhodanese, sulfurtransf 22.6 1.5E+02 0.0052 23.2 5.6 39 38-76 211-249 (271)
278 3vax_A Putative uncharacterize 22.6 1.3E+02 0.0043 25.0 5.4 8 96-103 132-139 (400)
279 1gc0_A Methionine gamma-lyase; 22.6 3.3E+02 0.011 22.6 8.6 34 72-105 102-137 (398)
280 3gaz_A Alcohol dehydrogenase s 22.6 3.1E+02 0.011 22.3 7.9 72 24-101 122-198 (343)
281 3fwz_A Inner membrane protein 22.5 1.1E+02 0.0036 21.2 4.2 64 41-106 63-127 (140)
282 3b46_A Aminotransferase BNA3; 22.5 1.8E+02 0.0063 24.7 6.5 25 175-199 277-302 (447)
283 3p9x_A Phosphoribosylglycinami 22.4 1.8E+02 0.0063 22.2 5.7 55 49-105 29-89 (211)
284 2dr3_A UPF0273 protein PH0284; 22.4 1.6E+02 0.0055 22.3 5.6 53 45-97 18-74 (247)
285 3ffy_A Putative tetrapyrrole ( 22.3 38 0.0013 23.1 1.6 56 3-59 57-113 (115)
286 3ele_A Amino transferase; RER0 22.2 3.3E+02 0.011 22.4 8.7 13 177-189 253-265 (398)
287 1qgn_A Protein (cystathionine 21.9 2.4E+02 0.0082 24.3 7.0 18 181-198 271-288 (445)
288 3ilm_A ALR3790 protein; rhodan 21.8 2.1E+02 0.0071 19.9 6.3 44 24-76 39-82 (141)
289 2prs_A High-affinity zinc upta 21.7 1.3E+02 0.0043 24.2 4.9 64 52-117 175-243 (284)
290 1tt7_A YHFP; alcohol dehydroge 21.5 2E+02 0.0069 23.3 6.3 58 42-103 142-201 (330)
291 1piw_A Hypothetical zinc-type 21.5 2.4E+02 0.0081 23.3 6.8 61 40-104 170-230 (360)
292 1xa0_A Putative NADPH dependen 21.4 2E+02 0.0069 23.2 6.3 60 42-105 141-202 (328)
293 1e5x_A Threonine synthase; thr 21.4 4.1E+02 0.014 23.2 8.9 81 23-106 158-240 (486)
294 3fbg_A Putative arginate lyase 21.3 3.4E+02 0.011 22.1 10.1 78 24-106 116-204 (346)
295 3acz_A Methionine gamma-lyase; 21.2 3.5E+02 0.012 22.4 8.6 17 182-198 216-233 (389)
296 3ujp_A Mn transporter subunit; 21.2 1.5E+02 0.0052 24.1 5.3 83 35-119 172-261 (307)
297 2ywb_A GMP synthase [glutamine 21.2 4.2E+02 0.014 23.2 9.6 78 23-106 188-271 (503)
298 2trc_P Phosducin, MEKA, PP33; 21.2 10 0.00035 29.4 -1.7 18 173-191 3-20 (217)
299 2po3_A 4-dehydrase; external a 21.1 3.5E+02 0.012 22.6 8.0 16 181-196 207-223 (424)
300 1xvl_A Mn transporter, MNTC pr 21.1 1.5E+02 0.005 24.4 5.2 68 50-119 203-275 (321)
301 1cs1_A CGS, protein (cystathio 21.0 3.5E+02 0.012 22.2 8.8 15 182-196 209-224 (386)
302 1uar_A Rhodanese; sulfurtransf 21.0 1.2E+02 0.0041 24.0 4.7 39 37-75 220-259 (285)
303 1gr0_A Inositol-3-phosphate sy 21.0 3.6E+02 0.012 22.6 7.4 64 38-105 130-197 (367)
304 3hzu_A Thiosulfate sulfurtrans 20.9 1.7E+02 0.006 23.8 5.7 41 36-76 97-138 (318)
305 2dr1_A PH1308 protein, 386AA l 20.9 3.1E+02 0.01 22.3 7.5 21 84-104 132-153 (386)
306 3jyn_A Quinone oxidoreductase; 20.8 3.3E+02 0.011 21.9 10.0 78 24-105 112-193 (325)
307 2k0z_A Uncharacterized protein 20.8 1.4E+02 0.0046 19.7 4.3 44 24-75 38-81 (110)
308 1zuw_A Glutamate racemase 1; ( 20.6 3.2E+02 0.011 21.6 8.5 72 3-79 17-95 (272)
309 3utn_X Thiosulfate sulfurtrans 20.5 1.5E+02 0.0052 24.4 5.2 41 35-75 98-139 (327)
310 2wlr_A Putative thiosulfate su 20.5 1.5E+02 0.0052 25.3 5.4 49 35-83 188-237 (423)
311 3fdb_A Beta C-S lyase, putativ 20.4 3.5E+02 0.012 21.9 9.4 53 47-103 102-156 (377)
312 2o0r_A RV0858C (N-succinyldiam 20.3 3.7E+02 0.013 22.3 8.5 25 175-199 236-260 (411)
313 3n0l_A Serine hydroxymethyltra 20.2 1.4E+02 0.0049 24.8 5.3 59 47-105 108-172 (417)
314 2fao_A Probable ATP-dependent 20.1 3.6E+02 0.012 22.0 7.7 64 12-91 131-195 (309)
315 1v2d_A Glutamine aminotransfer 20.1 3.5E+02 0.012 22.0 7.7 21 177-197 227-247 (381)
No 1
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=4.6e-43 Score=320.27 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=235.0
Q ss_pred hHHHHHHHhcccceeee----ccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIG----FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
++|++.++++|+..++. ..++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|++++
T Consensus 22 ~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 100 (541)
T 1v25_A 22 DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQR-ARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLH 100 (541)
T ss_dssp HHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCCceEEEEecCCCCceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEE
Confidence 67888999999988876 34578999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 79 GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 79 ~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
|+++.++.+++.+++++++++++|++.+. .+.+.++....+..+.++.+++... .+...++++...... .
T Consensus 101 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~----- 170 (541)
T 1v25_A 101 TANPRLSPKEIAYILNHAEDKVLLFDPNL-LPLVEAIRGELKTVQHFVVMDEKAP-EGYLAYEEALGEEAD---P----- 170 (541)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHGGGCSSCCEEEESSSCCC-TTCEEHHHHCCSCCC---C-----
T ss_pred ecCcccCHHHHHHHHHhCCCcEEEEChhH-HHHHHHHHhhCCCccEEEEecCCCC-cccccHHHHhhccCC---c-----
Confidence 99999999999999999999999999874 4666666666666777776654321 133456555432211 0
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHH--HHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
....++++++|+|||||||.||||++||+++..+.... ...+++ +++|++++.+|++|.+++.. ++.++..|+++
T Consensus 171 -~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~ 247 (541)
T 1v25_A 171 -VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-SEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQ 247 (541)
T ss_dssp -CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCC-CTTCEEEECSCTTSHHHHTH-HHHHHHHTCEE
T ss_pred -ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccC-CCCCEEEEeccchhhhHHHH-HHHHHhcCceE
Confidence 13456899999999999999999999999998776552 345567 88999999999999998754 78899999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
++.+...++..+++.++++++|++.++|+++..|++.......++++||.++++ ..+..|+++++.|
T Consensus 248 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~Y 324 (541)
T 1v25_A 248 VLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGY 324 (541)
T ss_dssp EECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEE
T ss_pred EeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhCCceeecc
Confidence 998764458999999999999999999999999999887777778888754432 2245677766655
No 2
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.9e-43 Score=320.90 Aligned_cols=290 Identities=11% Similarity=0.112 Sum_probs=235.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 34 ~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 34 RILTVGVQSHPHSLAIICGERQLSYIELDRL-STNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHhCCCceEEEcCCCceeHHHHHHH-HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCC
Confidence 6789999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
.++.+++.++++++++++++++.... ......+.........++..+... ....+.++..........
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----- 184 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQA---TDFGLLDWIETPAETFVD----- 184 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCT---TSEEHHHHHHSCCSSCCC-----
T ss_pred CCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCc---cccchhhhhhcccccccc-----
Confidence 99999999999999999999987531 123334444455556666554431 222344444432221111
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|.+++.. .++.++..|++++
T Consensus 185 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 185 FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL-NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCC-CCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 013467999999999999999999999999999999998888999 99999999999999998865 5889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+.++ +..+++.++++++|++.++|+++..+++.......++++||.++++ +...+|+++++.|
T Consensus 264 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~Y 339 (544)
T 3o83_A 264 MAPNPE-PLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVF 339 (544)
T ss_dssp ECSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEE
T ss_pred ECCCCC-HHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeee
Confidence 998876 7999999999999999999999999999876666677777755432 2333566666554
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.5e-43 Score=321.85 Aligned_cols=286 Identities=15% Similarity=0.191 Sum_probs=233.7
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 29 ~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTR-ADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALP 107 (539)
T ss_dssp HHHHHHHHHHTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHHHHHHCCCCEEEEeCCCcccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCC
Confidence 5788899999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHH----HHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
.++.+++.+++++++++++++++... ...+..+....+..+.++..++.. .+.++.........
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~------ 175 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------EFLPLEDLHTEPVK------ 175 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------TSEEGGGCCCCCCC------
T ss_pred CCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc------chhhhhhccccccc------
Confidence 99999999999999999999987521 123333444455555555443221 12222111111000
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.....++++++|+|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+.. .++.++..|++++
T Consensus 176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL-DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCC-CCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 013467899999999999999999999999999999888888888 99999999999999999865 6899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+.++ +..+++.++++++|++.++|+++..+++.......++++||.++++ +...+|+++++.|
T Consensus 255 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~Y 330 (539)
T 1mdb_A 255 LSPSPS-PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVF 330 (539)
T ss_dssp ECSSSS-HHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEE
T ss_pred ECCCCC-HHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEE
Confidence 998765 7999999999999999999999999999887777788898866543 3333566665554
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3e-43 Score=322.15 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=230.3
Q ss_pred hHHHHHHHhcccceeee-----ccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIG-----FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~-----~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|.+.++++|+..++. ..++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 24 ~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 102 (550)
T 3rix_A 24 EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEM-SVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 102 (550)
T ss_dssp HHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEE
Confidence 57888899999966653 24678999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHH
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
+|+++.++.+++.++++++++++++++.+. .+.+.+.....+....++.++......+..++.++..............
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (550)
T 3rix_A 103 APANDIYNERELLNSMNISQPTVVFVSKKG-LQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 181 (550)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGG-HHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTCCTTTC
T ss_pred eecCCcCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhcccccccccccc
Confidence 999999999999999999999999999874 5777777777788888887776544456677777775533211110000
Q ss_pred -hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 158 -VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 158 -~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
......++++++|+|||||||.||||++||+++...+...... .++ .++|++++.+|++|.+|+.. ++.++..|
T Consensus 182 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~g~~~-~~~~l~~G 259 (550)
T 3rix_A 182 VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI-IPDTAILSVVPFHHGFGMFT-TLGYLICG 259 (550)
T ss_dssp CCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHT
T ss_pred CCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccC-CCCcEEEEechHHHHHHHHH-HHHHHHcC
Confidence 0012245789999999999999999999999999887766554 456 78999999999999999754 78899999
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+++++.+.++ +..+++.++++++|++.++|+++..|++.......++++||.++++
T Consensus 260 ~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 260 FRVVLMYRFE-EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp CEEEECSSCC-HHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred CEEEEeCCCC-HHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence 9999998766 7999999999999999999999999998776677778888865543
No 5
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=6.9e-43 Score=317.39 Aligned_cols=284 Identities=17% Similarity=0.163 Sum_probs=227.7
Q ss_pred hHHHHHHHhcccceeeeccCC--ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFNAP--EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~--~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+.++ ++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 20 ~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNAL-ANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHH-HHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 678899999999888877666 8999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
++.++.+++.++++++++++++++... ...+..+....+....++... ....+.+........... .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~------~ 165 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPS-APVIDAIRAQADPPGTVTDWI------GADSLAERLRSAAADEPA------V 165 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGG-HHHHHHHHHSSSCCTTCCEEE------EHHHHHHHHHHCCCCCCC------C
T ss_pred CcccCHHHHHHHHHhcCceEEEECCch-HHHHHHHHhccCCccEEEEcc------CcccHHHHhhccCcCCCC------C
Confidence 999999999999999999999999874 455555544443322222111 112234444332211111 2
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
...++++++|+|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+... +.++..|+++++.+
T Consensus 166 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~~~-~~~~~~G~~~v~~~ 243 (517)
T 3r44_A 166 ECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDV-RYRDRLLLPLPMFHVAALTTV-IFSAMRGVTLISMP 243 (517)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCC-CTTCEEEECSCTTSHHHHHHH-HHHHHHTCEEEECS
T ss_pred CCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCC-CCCCEEEEeCchHHHHHHHHH-HHHHhcCeEEEEeC
Confidence 3467999999999999999999999999999999998888899 999999999999999998664 44455999999998
Q ss_pred CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH----------HHHHhhhHHHhhh
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN----------YAKSTSLQHYMAY 303 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~----------~a~~~g~~~~~~~ 303 (305)
.++ +..+++.++++++|++.++|+++..|.+.+.....++++||.++++ +..+.|+++++.|
T Consensus 244 ~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~Y 315 (517)
T 3r44_A 244 QFD-ATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGY 315 (517)
T ss_dssp SCC-HHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEE
T ss_pred CCC-HHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEee
Confidence 766 7999999999999999999999999999888877888888755443 3333466666555
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.2e-41 Score=307.26 Aligned_cols=269 Identities=17% Similarity=0.176 Sum_probs=228.5
Q ss_pred hHHHHHHHhcccceeeeccC--------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA--------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~--------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G 74 (305)
++|++.++++|+..++.+.+ +++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 23 ~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 101 (549)
T 3g7s_A 23 DRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEV-TKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVA 101 (549)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 67899999999988887766 78999999996 9999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCch
Q psy2835 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 154 (305)
Q Consensus 75 ~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (305)
++++|++|.++.+++.++++++++++++++... .+.+.......+ ...++..+. ....+.++..........
T Consensus 102 ~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~-~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~- 173 (549)
T 3g7s_A 102 ATPVPINPMYKSFELEHILNDSEATTLVVHSML-YENFKPVLEKTG-VERVFVVGG-----EVNSLSEVMDSGSEDFEN- 173 (549)
T ss_dssp CEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGG-HHHHHHHHTTSC-CCEEEEETC-----SSSCHHHHHHHSCSCCCC-
T ss_pred CEEEccCCCCCHHHHHHHHHhcCCCEEEEChHH-HHHHHHHHhhCC-CcEEEEeCC-----CCcCHHHHHhcCcccccc-
Confidence 999999999999999999999999999999874 466666555544 445554442 344577776654322111
Q ss_pred hHHhhhccC-CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 155 LDRVLETIA-TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 155 ~~~~~~~~~-~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
.... ++++++|+|||||||.||||++||+++..++......+++ .++|++++.+|++|.+++.. ++.++..|
T Consensus 174 -----~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~~~~~-~~~~l~~G 246 (549)
T 3g7s_A 174 -----VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGL-SHMDTIVGCMPMFHSAEFGL-VNLMVTVG 246 (549)
T ss_dssp -----CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCC-CTTCEEECCSCTTSHHHHHH-HTTHHHHC
T ss_pred -----ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCC-CCCCEEEEeCcHHHHHHHHH-HHHHHhcC
Confidence 1223 3899999999999999999999999999999998888999 99999999999999999877 88899999
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhh--cccChHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVG--KQTTGVKRWI 288 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~~~sl~~~~ 288 (305)
+++++.+.++ +..+++.++++++|++.++|+++..|++...... .+++++|.++
T Consensus 247 ~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~ 302 (549)
T 3g7s_A 247 NEYVVMGMFN-QEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFA 302 (549)
T ss_dssp CEEEEESSCC-HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEE
T ss_pred ceEEEcCCCC-HHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEE
Confidence 9999998766 7999999999999999999999999999877655 5677776543
No 7
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.6e-42 Score=313.98 Aligned_cols=280 Identities=15% Similarity=0.201 Sum_probs=222.2
Q ss_pred HHHHHHHhcccceeeec--cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 4 FLKLGLERYHSVCIIGF--NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 4 ~l~~~~~~~~~~~~~~~--~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++.+.++++ +..++.+ .++++||+||.++ ++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++|++
T Consensus 31 ~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 31 KYMERYAKL-GAIAFTNAVTGVDYSYAEYLEK-SCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHHHHHHH-TCEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred HHHhhhccc-CCceEEEcCCCCEeeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 566667777 7666655 5689999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+.++.+++.+++++++++++|++... .+.+.++...++....++.+++.....+...++++..................
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKG-LDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVE 187 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTT-HHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGGGCCCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHH-HHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcccccccc
Confidence 99999999999999999999999874 45555555455545556655543211224457777654321101100000000
Q ss_pred c-CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 I-ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~-~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
. .++++++|+|||||||.||||++||+++...+...... +++ +++|++++.+|++|.+|+...++.++ .|++++
T Consensus 188 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v 265 (548)
T 2d1s_A 188 VDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV-SPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVV 265 (548)
T ss_dssp CCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCC-CTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEE
T ss_pred cCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCC-CccceEEEeccHHHHHHHHHHHHHHh-cCcEEE
Confidence 0 23899999999999999999999999999988776665 567 88999999999999999876567777 999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+.+.++ +..+++.++++++|+++++|+++..|.+.......++++||.+++
T Consensus 266 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~ 316 (548)
T 2d1s_A 266 MLTKFD-EETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316 (548)
T ss_dssp ECCCCC-HHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEE
T ss_pred EcCCCC-HHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEE
Confidence 998765 799999999999999999999999998865555567788775544
No 8
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.1e-42 Score=317.46 Aligned_cols=274 Identities=19% Similarity=0.264 Sum_probs=224.8
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
+++.+.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 26 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 26 SYVLENLSNHSSKPCLINGANGDVYTYADVELT-ARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp HHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHhhcCCCceEEEECCCCCEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 5677888999998777664 678999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
+|.++.+++.++++++++++++++... .+.+.+..... .. .++.++... .+...++++.......... .
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~ 173 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACY-YEKVKDFARES-DV-KVMCVDSAP--DGCLHFSELTQADENEAPQ------V 173 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGG-THHHHHHHHHH-TC-EEEESSCCC--TTCEETHHHHTSCGGGCCC------C
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHH-HHHHHHHHhhc-Cc-eEEEecCCC--CCccCHHHHhhcccccccc------C
Confidence 999999999999999999999999874 34444443222 22 344444322 3445566666433211111 2
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 236 (305)
...++++++|+|||||||.||||++||+++...+..... .+++ .++|++++.+|++|.+|+...++.++..|+++
T Consensus 174 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 252 (536)
T 3ni2_A 174 DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252 (536)
T ss_dssp CCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCC-CTTCCEEECSCTTSHHHHHHTHHHHHHHTCCE
T ss_pred CCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccC-CCCCEEEEecChHHHHHHHHHHHHHHhcCCEE
Confidence 346799999999999999999999999999988766543 3456 88999999999999999977789999999999
Q ss_pred EEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 237 WFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 237 v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
++.+.++ +..+++.++++++|++.++|+++..+++.......++++||.++++
T Consensus 253 v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 253 LIMPKFE-IGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSG 305 (536)
T ss_dssp EECSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEE
T ss_pred EEcCCCC-HHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEEC
Confidence 9998776 6999999999999999999999999998776677788888765443
No 9
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=7.2e-42 Score=318.68 Aligned_cols=278 Identities=13% Similarity=0.140 Sum_probs=224.2
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHH-HcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
++|++.++++|+..++.+ .++++||+||.++ ++++|+.|+ ++|+++||+|+++++|+++++++++||+++|+
T Consensus 86 ~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~-v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Ga 164 (663)
T 1ry2_A 86 NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEE-VCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 164 (663)
T ss_dssp HHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHH-HHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567788888999777765 2367999999996 999999999 99999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccCCCccEEEEccCCCC------CCCcccHH
Q psy2835 76 FAAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPD------KPGVISWD 141 (305)
Q Consensus 76 ~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~ 141 (305)
+++|+++.++.+++.+++++++++++|+++... ...+.+....++.++.+++++.... ......|+
T Consensus 165 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 244 (663)
T 1ry2_A 165 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWA 244 (663)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHH
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHH
Confidence 999999999999999999999999999987521 2345555566666777776654321 12234577
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH-HHHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++.......... ....++++++|+|||||||+||||++||.++..+.. .....+++ .++|++++..|++|+.
T Consensus 245 ~~~~~~~~~~~~------~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~ 317 (663)
T 1ry2_A 245 TEKKKYKTYYPC------TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT-HQEDVFFTAGDIGWIT 317 (663)
T ss_dssp HHHTTSCSCCCC------CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC-CSSCEEEECSCTTSHH
T ss_pred HHHhhcCCCCCc------cccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC-CCCcEEEEcCCcHHhh
Confidence 766533211111 134579999999999999999999999999887664 34556788 8999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWI 288 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~ 288 (305)
|..+.++.++..|+++++.+.. .++..+++.|++++||+++++|++++.|.+... ....++++||.++
T Consensus 318 g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~ 390 (663)
T 1ry2_A 318 GHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLG 390 (663)
T ss_dssp HHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEE
T ss_pred hhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEE
Confidence 9877789999999999998752 347899999999999999999999999987543 2345678887543
No 10
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=8.5e-42 Score=317.92 Aligned_cols=279 Identities=15% Similarity=0.202 Sum_probs=221.8
Q ss_pred hHHHHHHHhcccceeeec------cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGF------NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~------~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
++|++.++++|+..++.+ .++++||+||.++ ++++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 80 ~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~-v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav 158 (652)
T 1pg4_A 80 NCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRD-VCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158 (652)
T ss_dssp HHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHH-HHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcE
Confidence 456677778899777765 2368999999996 999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeChHH--------HHHHHHHhccCC--CccEEEEccCCCCC-----CCcccHH
Q psy2835 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCP--KLKAIVQYEGKPDK-----PGVISWD 141 (305)
Q Consensus 77 ~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~--~~~~~i~~~~~~~~-----~~~~~~~ 141 (305)
++|+++.++.+++.+++++++++++|+++... ...+.+.....+ .+..+++++..... .....|+
T Consensus 159 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 238 (652)
T 1pg4_A 159 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR 238 (652)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHH
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHH
Confidence 99999999999999999999999999987521 133444444332 45566666532211 1234577
Q ss_pred HHHHhccCCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHH-HHHHhhccCCCCceEEEeCchhHHH
Q psy2835 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-CIIQYFKLESAALSVISFLPLSHIA 220 (305)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~l~~~pl~~~~ 220 (305)
++.......... ....++++++|+|||||||+||||++||+++..+.. .....+++ .++|++++..|++|..
T Consensus 239 ~~~~~~~~~~~~------~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~ 311 (652)
T 1pg4_A 239 DLIEKASPEHQP------EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY-HPGDIYWCTADVGWVT 311 (652)
T ss_dssp HHHTTSCSCCCC------CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHH
T ss_pred HHHhhcCCCCCc------cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC-CCCCEEEEccCCeeee
Confidence 776543211111 134578999999999999999999999999987664 44556788 9999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHHH--HhhcccChHHHHHH
Q psy2835 221 AQTVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM--AVGKQTTGVKRWIA 289 (305)
Q Consensus 221 g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~sl~~~~~ 289 (305)
|+.+.++.++..|+++++.+.. .++..+++.+++++||+++++|++++.|++... ....++++||.+++
T Consensus 312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~ 385 (652)
T 1pg4_A 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGS 385 (652)
T ss_dssp HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEE
T ss_pred chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEE
Confidence 9877789999999999998752 347899999999999999999999999988654 23456788875543
No 11
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.2e-40 Score=302.24 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=218.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++||+.++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 10 ~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 10 DVYRRNAALFPDRTAFMVDGVRLTHRDYLAR-AERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHHCCCceEEEECCcEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCC
Confidence 6789999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.+. .+.+.......+....++.+++.. ..+.++.......... ....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~ 157 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDY-RDIVAGVLPSLGGVKKAYAIGDGS-----GPFAPFKDLASDTPFS-----APEF 157 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTT-HHHHHHHGGGCSSCCEEEESSCCC-----SSCEEGGGTCCCSCCC-----CCCC
T ss_pred CCCHHHHHHHHHhcCceEEEECcch-hhhHHhhhcccCCceEEEEcCCCC-----cChhhHhhccCCCCCC-----cCCC
Confidence 9999999999999999999999874 355455556677777777665422 1122222211111111 1245
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||++||+++...+......+++ +++|++++.+|++|.+|+.. .+.++..|++.++...+
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~~~~~g~~~~~~~~ 235 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRL-TEADVNLGMLPLFHVTGLGL-MLTLQQAGGASVIAAKF 235 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSC
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCC-CCCcEEEEeCCCcchhHHHH-HHHHHHhCCcEEEeccc
Confidence 67999999999999999999999999999999998888999 99999999999999999876 45544555555555544
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHH
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRW 287 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~ 287 (305)
+ +..+++.++++++|++.++|+++..|++.. ...+++++|.+
T Consensus 236 ~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~ 277 (509)
T 3ivr_A 236 D-PAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAV 277 (509)
T ss_dssp C-HHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEE
T ss_pred C-HHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhhee
Confidence 4 799999999999999999999999998865 44556666643
No 12
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.2e-41 Score=310.22 Aligned_cols=262 Identities=16% Similarity=0.198 Sum_probs=205.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++ +|++.++.+.++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 28 ~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 28 YLFRLNET-RAGKTAYIDDTGSTTYGELEER-ARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp HHHHHTGG-GTTSEEEECSSCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCT
T ss_pred HHHHhhhc-cCCceEEEeCCCCccHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCc
Confidence 56777778 9998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCc-cEEEEccCCCCC-CCcccHHHHHHhccCCCCchhHHhhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL-KAIVQYEGKPDK-PGVISWDELMELGRAAPDESLDRVLE 160 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (305)
.++.+++.++++++++++++++.+. .+.+.+.....+.. ..++..+..... .....++++.......... .
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 178 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGAL-VQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKA------A 178 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGG-HHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSC------C
T ss_pred ccCHHHHHHHHhccCCeEEEechhh-hhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccc------c
Confidence 9999999999999999999999874 45555554444444 444443332110 1123566665532211111 1
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHH-HHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNI-TFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++++++|+|||||||.||||++||+++ ..........+++ .++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI-AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC-CTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC-CCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 346799999999999999999999999999 5555444445677 88999999999999999877778899999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKL 274 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 274 (305)
+...++..+++.++++++|++.++|+++..+++..
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP 292 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc
Confidence 54444799999999999999999999999998754
No 13
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.5e-41 Score=312.23 Aligned_cols=295 Identities=12% Similarity=0.118 Sum_probs=232.8
Q ss_pred hHHHHHHHhcccceeeec-----cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeE
Q psy2835 3 AFLKLGLERYHSVCIIGF-----NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA 77 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~-----~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~ 77 (305)
++|++.++++|+..++.+ .++++||+||.++ ++++|++|++.|+++||+|+++++|+++++++++||+++|+++
T Consensus 60 ~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~-~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~ 138 (580)
T 3etc_A 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYY-SDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIA 138 (580)
T ss_dssp HTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEE
Confidence 688999999999877765 2358999999996 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeChHH-HHHHHHHhccCCCc-cEEEEccCCCCCCCcccHHHHHHhccCCCCchh
Q psy2835 78 AGMYTTNSPEACLHCLVTSDANICVVEDDKQ-LEKILKVKAQCPKL-KAIVQYEGKPDKPGVISWDELMELGRAAPDESL 155 (305)
Q Consensus 78 v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 155 (305)
+|+++.++.+++.++++++++++++++.+.. .+.+.+....++.. ...+.+++. ...++..+.+...........+.
T Consensus 139 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 217 (580)
T 3etc_A 139 VPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGD-VLEGWIDFRKELEESSPIFERPT 217 (580)
T ss_dssp EECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSS-CCTTCEEHHHHHHHSCSCCCCCC
T ss_pred EeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCc-cccccccHHHHHhhCCcccccCc
Confidence 9999999999999999999999999987632 24455555555544 444444432 22456677777765433221110
Q ss_pred HHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 156 ~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
......++++++|+|||||||.||+|.++|.++...+.......++ .+++++++..|++|..+....++.++..|++
T Consensus 218 --~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 218 --GEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV-EDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp --GGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCC-CTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred --cccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCC-CCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 0123567999999999999999999999999999888776666778 8999999999999988876668899999999
Q ss_pred EEEeC-CccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 236 LWFAD-KNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 236 ~v~~~-~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+++.+ ...++..+++.++++++|+++++|++++.|.+. .....++++||.++++ +.+..|+++++.|
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~Y 373 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGF 373 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEeccc
Confidence 99884 333478999999999999999999999999874 2334567777754332 3344677777665
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.2e-41 Score=308.18 Aligned_cols=288 Identities=17% Similarity=0.185 Sum_probs=229.4
Q ss_pred hHHHHHHHh-----cccceeeecc-----CCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHH
Q psy2835 3 AFLKLGLER-----YHSVCIIGFN-----APEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAI 71 (305)
Q Consensus 3 ~~l~~~~~~-----~~~~~~~~~~-----~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~ 71 (305)
+++++.+++ +|+..++.+. ++++||+||.++ ++++|++|.+. |+++||+|+++++|+++++++++||+
T Consensus 42 ~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~-~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 120 (570)
T 3c5e_A 42 DVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSEN-SQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCI 120 (570)
T ss_dssp HTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHH-HHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHH-HHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 567788887 9997777652 368999999996 99999999998 99999999999999999999999999
Q ss_pred HcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC
Q psy2835 72 YAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP 151 (305)
Q Consensus 72 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 151 (305)
++|++++|+++.++.+++.+++++++++++|++.+. .+.+.++...++.++.++.+++.. ..+...++++........
T Consensus 121 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 198 (570)
T 3c5e_A 121 RAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEV-IQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKKLLNEASTTH 198 (570)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTT-HHHHHHHGGGCTTCCEEEEESSSC-CTTSEEHHHHHHHSCSCC
T ss_pred HcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHH-HHHHHHHhhcCCceeEEEEecccC-ccccccHHHHhhcccccc
Confidence 999999999999999999999999999999999874 466666666677776666555421 134456777765433211
Q ss_pred CchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHH--HHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHH
Q psy2835 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITF--NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229 (305)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~ 229 (305)
.. ....++++++|+|||||||.||||++||+ ++. ..... ..+++ .++|++++..|++|.+++...++.+
T Consensus 199 ~~------~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~-~~~d~~~~~~p~~~~~~~~~~~~~~ 269 (570)
T 3c5e_A 199 HC------VETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL-QASDIMWTISDTGWILNILCSLMEP 269 (570)
T ss_dssp CC------CCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC-CTTCEEEECCCTTSHHHHHHTTHHH
T ss_pred cc------cCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC-CCCceEEEcCchHHHHHHHHHHHHH
Confidence 11 13467899999999999999999999999 444 33333 56677 8999999999999999987678999
Q ss_pred HHhCcEEEEeCC-ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH-----------HHHHHhhh
Q psy2835 230 MTVAATLWFADK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA-----------NYAKSTSL 297 (305)
Q Consensus 230 l~~G~~~v~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~-----------~~a~~~g~ 297 (305)
+..|+++++.+. ..+|..+++.++++++|++.++|++++.|++. .....++++||.+++ .+...+|+
T Consensus 270 l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~ 348 (570)
T 3c5e_A 270 WALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348 (570)
T ss_dssp HHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS-CTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred HHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc-cccccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence 999999999873 33479999999999999999999999999875 223345677664433 23444677
Q ss_pred HHHhhh
Q psy2835 298 QHYMAY 303 (305)
Q Consensus 298 ~~~~~~ 303 (305)
++++.|
T Consensus 349 ~i~~~Y 354 (570)
T 3c5e_A 349 DIRESY 354 (570)
T ss_dssp CCEEEE
T ss_pred chhhcc
Confidence 776665
No 15
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=8.5e-41 Score=309.71 Aligned_cols=286 Identities=11% Similarity=0.108 Sum_probs=229.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++ ||..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 31 ~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~ 107 (617)
T 3rg2_A 31 DILTRHAA--SDSIAVIDGERQLSYRELNQA-ADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALF 107 (617)
T ss_dssp HHHHTTTT--CCSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHhhC--CCCeEEecCCceEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCc
Confidence 45555555 888888889999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHH----HHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRV 158 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 158 (305)
..+.+++.++++++++++++++..... ..........+....+...... ....+.+...........
T Consensus 108 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----- 178 (617)
T 3rg2_A 108 SHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS----GEHNLQDAINHPAEDFTA----- 178 (617)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC----STTBHHHHHHSCCSSCCC-----
T ss_pred cccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc----cccchhhhhcccccccCC-----
Confidence 999999999999999999999875321 2233333445555555544432 223344444432211111
Q ss_pred hhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHH-HHHHHHHhCcEEE
Q psy2835 159 LETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTV-DIYSVMTVAATLW 237 (305)
Q Consensus 159 ~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~~l~~G~~~v 237 (305)
.+..++++++|+|||||||.||||+++|+++.+.+......+++ .++|++++.+|++|.+++.. .++.++..|++++
T Consensus 179 -~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 179 -TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQF-TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp -CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred -CCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCC-CCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 13467899999999999999999999999999999998888999 99999999999999988764 6899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhc--ccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGK--QTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+... +..+++.++++++|++.++|+++..+++....... ++++||.++++ +....|+++++.|
T Consensus 257 ~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~Y 334 (617)
T 3rg2_A 257 LAADPS-ATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVF 334 (617)
T ss_dssp ECSSCC-HHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEE
T ss_pred EeCCCC-HHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEe
Confidence 998765 68999999999999999999999999987655433 67777755432 3344566666555
No 16
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.3e-41 Score=304.83 Aligned_cols=265 Identities=12% Similarity=0.158 Sum_probs=208.6
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 6 ~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~-~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 6 EMLRRAATRAPDHCALAVPARGLRLTHAELRAR-VEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (504)
T ss_dssp HHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCCCceEEEEcCCCceeEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 5788999999998888776 778999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEE--eChHHHHHH-HHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCC-CchhH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVV--EDDKQLEKI-LKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAP-DESLD 156 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~--~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 156 (305)
++.++.+++.+++++++++++++ +... .+.+ .+ .+..+ ++. ++++........ .....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~-~~~~~~~----~~~~~-~~~------------~~~~~~~~~~~~~~~~~~ 146 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQS----GSGAR-IIF------------LGDLVRDGEPYSYGPPIE 146 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CH-HHHHHHH----CCCCE-EEE------------GGGTEETTEECCCSCCCC
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhh-hhhhhhc----cccce-eEE------------ecchhhcCcccccCCccC
Confidence 99999999999999999999999 6552 2333 22 12222 221 222211110000 00000
Q ss_pred HhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcE
Q psy2835 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAAT 235 (305)
Q Consensus 157 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~ 235 (305)
.....++++++|+|||||||.||||++||+++...+......+++. .++|++++.+|++|.+|+...++.++..|++
T Consensus 147 --~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~ 224 (504)
T 1t5h_X 147 --DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGT 224 (504)
T ss_dssp --CCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCE
T ss_pred --CCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCce
Confidence 0134678999999999999999999999999999888877766652 4679999999999999986668999999999
Q ss_pred EEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHH--hhcccChHHHHHH
Q psy2835 236 LWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA--VGKQTTGVKRWIA 289 (305)
Q Consensus 236 ~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~sl~~~~~ 289 (305)
+++.+.++ |..+++.++++++|+++++|+++..|++.... ...++++||.+++
T Consensus 225 ~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 225 YVVVEEFR-PVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp EEECSSCC-HHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred EEeCCCCC-HHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 99998765 79999999999999999999999999887522 3446778775544
No 17
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.3e-42 Score=309.30 Aligned_cols=283 Identities=19% Similarity=0.254 Sum_probs=221.8
Q ss_pred hHHHHHHHhcccceeee---ccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 3 AFLKLGLERYHSVCIIG---FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~---~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
+++++.++++|+..++. .+++++||+||.++ ++++|++|.++|+++||+|+++++|+++++++++||+++|++++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 82 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVAR-AGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLP 82 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEe
Confidence 67899999999966554 46789999999996 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 80 MYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 80 i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
+++.++.+++.++++++++++++++.+. .+.+.++...... .+..++... ...+.+...........
T Consensus 83 l~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~------ 149 (503)
T 4fuq_A 83 LNTAYTLHELDYFITDAEPKIVVCDPSK-RDGIAAIAAKVGA--TVETLGPDG----RGSLTDAAAGASEAFAT------ 149 (503)
T ss_dssp CCTTCCHHHHHHHHHHHCCSEEEECGGG-TTTTHHHHHHHTC--EEEECCTTS----CSHHHHHHHTSCSCCCC------
T ss_pred cCCCCCHHHHHHHHHhcCCcEEEECchh-hHHHHHHHhhcCc--eEEEecCCc----ccccchhhhcCCCCcCc------
Confidence 9999999999999999999999998763 2222222222211 233332211 11222222221111111
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++|+|||||||.||||++||+++..+.......+++ +++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 228 (503)
T 4fuq_A 150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRF-TPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL 228 (503)
T ss_dssp CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC
T ss_pred CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCC-CCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc
Confidence 13467999999999999999999999999999999998888999 99999999999999998766678899999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.++ +..+++.++ ++|+++++|+++..+++.......+++++|.++++ |...+|.++++.|
T Consensus 229 ~~~~-~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~Y 300 (503)
T 4fuq_A 229 PKFD-PDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERY 300 (503)
T ss_dssp SSCC-HHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECC
T ss_pred CCCC-HHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceE
Confidence 8766 789999998 89999999999999988766555667777644432 4445677666655
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.9e-41 Score=305.72 Aligned_cols=262 Identities=16% Similarity=0.180 Sum_probs=212.9
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 5 ~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~-~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 5 EQIEKWAAETPDQTAFVWRDAKITYKQLKED-SDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHCCCceEEEeCCceEEHHHHHHH-HHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCC
Confidence 6789999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.... .......+ . ....+.++..........+ ....
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~~~~~----------~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~----~~~~ 141 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSATAVT----------VTDLPVRI-V-------SEDNLKDIFFTHKGNTPNP----EHAV 141 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEESSCCC----------SSCCSSEE-E-------ETHHHHHHHHHTTTCCCCG----GGSC
T ss_pred CCcHHHHHHHHHhcCCCEEEecCccc----------ccccccce-e-------chhhhhhhcccccccCCCc----cccC
Confidence 99999999999999999999985421 01111111 0 0111333332222111111 1245
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|..++. .++.++..|+++++.+..
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~ 219 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNL-QTGQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWAIDKD 219 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTC-CSSCEEEECSCTTSGGGHH-HHHHHHHTTCEEEECCHH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHhHHHH-HHHHHHhCCCEEEECCHH
Confidence 77999999999999999999999999999999988888999 9999999999999999875 489999999999999863
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
..+..+++.++++++|++.++|+++..+++.......++++||.+++
T Consensus 220 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~ 268 (512)
T 3fce_A 220 MIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLF 268 (512)
T ss_dssp HHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEE
T ss_pred HhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEE
Confidence 23789999999999999999999999998776656667778775543
No 19
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.7e-40 Score=301.41 Aligned_cols=259 Identities=18% Similarity=0.188 Sum_probs=216.5
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKL-GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~ 81 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+. |.++|++|+++++|+++++++++||+++|++++|++
T Consensus 5 ~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~-~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 83 (511)
T 3e7w_A 5 HAIQTHAETYPQTDAFRSQGQSLTYQELWEQ-SDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVD 83 (511)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHCCCCeEEEcCCceeeHHHHHHH-HHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecC
Confidence 6789999999999999899999999999996 99999999885 888999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhc
Q psy2835 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLET 161 (305)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 161 (305)
+.++.+++.++++++++++++++..... ..... ......++++........... ..
T Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~~~~~~-------~~~~~------------~~~~~~~~~~~~~~~~~~~~~-----~~ 139 (511)
T 3e7w_A 84 LSIPSERIAKIIESSGAELLIHAAGLSI-------DAVGQ------------QIQTVSAEELLENEGGSVSQD-----QW 139 (511)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEESSSCCT-------TCCCC------------SSCEEEHHHHHTSCSCCCCGG-----GS
T ss_pred CCChHHHHHHHHHhCCCCEEEecccccc-------hhccc------------ccceecHhhhhccccCCcccc-----cc
Confidence 9999999999999999999999754210 00000 012234555554332221111 23
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
..++++++|+|||||||.||||++||+++...+......+++ .++|++++..|++|..++. .++.++..|+++++.+.
T Consensus 140 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPV-SGGKIFLNQAPFSFDLSVM-DLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTT-TTTCEEEECSCTTSTHHHH-HHHHHHHTTCEEEECCH
T ss_pred CCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCC-CccceEEEeCCccHHHHHH-HHHHHHhcCCEEEEcCh
Confidence 567899999999999999999999999999999988888888 9999999999999998865 48999999999999876
Q ss_pred c--cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH
Q psy2835 242 N--ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288 (305)
Q Consensus 242 ~--~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~ 288 (305)
. ..+..+++.++++++|++.++|+++..+++.+.....+++++|.++
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~ 266 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFM 266 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEE
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEE
Confidence 3 2378999999999999999999999999887655566677776544
No 20
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.7e-40 Score=297.08 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=207.5
Q ss_pred hHHHHHHHhcccceeeeccC---------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc
Q psy2835 3 AFLKLGLERYHSVCIIGFNA---------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~---------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~ 73 (305)
++|++.++++|+..++.+.+ +++||+||.++ ++++|++|.+.|+ +||+|+++++|+++++++++||+++
T Consensus 28 ~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~-~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~ 105 (480)
T 3t5a_A 28 AALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRR-TLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQA 105 (480)
T ss_dssp HHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHH-HHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHH-HHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 67889999999988887654 78999999996 9999999999996 9999999999999999999999999
Q ss_pred CCeEEecCC---CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCc--cEEEEccCCCCCCCcccHHHHHHhcc
Q psy2835 74 GGFAAGMYT---TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVISWDELMELGR 148 (305)
Q Consensus 74 G~~~v~i~~---~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~~~~ 148 (305)
|++++|+++ ..+.+++.+++++++++++|++.+. .+.+.+.....+.. ..++.++.... ...
T Consensus 106 G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 172 (480)
T 3t5a_A 106 GRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-VDDVVQHVARRPGESPPSIIEVDLLDL------------DAP 172 (480)
T ss_dssp TCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTT-HHHHHHTCC------CCEEEEGGGSCT------------TCC
T ss_pred CcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhH-HHHHHHHHhccccccccceeEeccccc------------ccc
Confidence 999999999 7889999999999999999999874 45555544333221 23332322110 000
Q ss_pred CCCCchhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCC------CceEEEeCchhHHHHH
Q psy2835 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA------ALSVISFLPLSHIAAQ 222 (305)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~~~~g~ 222 (305)
. ........++++++|+|||||||.||||++||+++..++......+.+ .. +|++++.+|++|.+|+
T Consensus 173 ---~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~~~~~~~d~~l~~~pl~h~~g~ 245 (480)
T 3t5a_A 173 ---N---GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFA-DTDGIPPPNSALVSWLPFYHDMGL 245 (480)
T ss_dssp ---------CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCT-TTTTCCCTTEEEEECCCTTSTTHH
T ss_pred ---c---CCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcc-ccccCCCCCCeEEEeCCCcCccHH
Confidence 0 001123467899999999999999999999999999999888888877 66 9999999999999998
Q ss_pred HHHHHHHHHhCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHHH----HHhhcccChHHHHHHH
Q psy2835 223 TVDIYSVMTVAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKL----MAVGKQTTGVKRWIAN 290 (305)
Q Consensus 223 ~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----~~~~~~~~sl~~~~~~ 290 (305)
...++.++..|+++++.+.. .++..+++.++++++| +..+|+++..++... .....++++||.++++
T Consensus 246 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~g 319 (480)
T 3t5a_A 246 VIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSG 319 (480)
T ss_dssp HHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEEC
T ss_pred HHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeec
Confidence 88889999999999999764 2478999999999999 889999988887752 3345678888765543
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.1e-39 Score=291.12 Aligned_cols=288 Identities=15% Similarity=0.104 Sum_probs=214.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+. +||+|+++++|+++++++++||+++|++++|+++
T Consensus 5 ~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~ 80 (501)
T 3ipl_A 5 FWLYKQAQQNGHHIAITDGQESYTYQNLYCE-ASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINT 80 (501)
T ss_dssp CHHHHHHHHHTTSEEEECSSCEEEHHHHHHH-HHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhcCCceEEEeCCcEEEHHHHHHH-HHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCc
Confidence 5789999999999999899999999999996 99999999987 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---CCCcccHHHHHHhccCCCCchhHHhh
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDRVL 159 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~ 159 (305)
.++.+++.++++++++++++++.+.. ....... ................ ......+........ ..........
T Consensus 81 ~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 157 (501)
T 3ipl_A 81 RLTPNEMTNQMRSIDVQLIFCTLPLE-LRGFQIV-SLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVV-PKESPSNILN 157 (501)
T ss_dssp TSCHHHHHHHHHHTTCCEEEESSCCC-CTTSEEE-ETTC---------------------------------CCHHHHTC
T ss_pred cCCHHHHHHHHHhcCCCEEEEccccc-ccccccc-ccccceeeeeecccccccccccccccccchhhcc-ccCCcccccc
Confidence 99999999999999999999987631 1110000 0011110000000000 000000000000000 0011111112
Q ss_pred hccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 160 ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 160 ~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
....++++++|+|||||||.||||++||+++..........+++ +++|++++.+|++|.+|+.. ++.++..|+++++.
T Consensus 158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGF-DRDTNWLSVLPIYHISGLSV-LLRAVIEGFTVRIV 235 (501)
T ss_dssp CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEC
T ss_pred cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCC-CccCEEEEeCcHHHHHHHHH-HHHHHHcCceEEeC
Confidence 23567999999999999999999999999999999998888999 99999999999999999866 89999999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHH----------HHHHHHHHhhhHHHhhh
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKR----------WIANYAKSTSLQHYMAY 303 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~----------~~~~~a~~~g~~~~~~~ 303 (305)
+.++ +..+++.++++++|++.++|+++..|++....... +||. -+.....+.|+++++.|
T Consensus 236 ~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~Y 305 (501)
T 3ipl_A 236 DKFN-AEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQYNLPIYNSF 305 (501)
T ss_dssp SSCC-HHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHHTTCCEEEEE
T ss_pred CCCC-HHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHHhCCCEeccc
Confidence 8766 79999999999999999999999999876432221 3332 23334445677776655
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.6e-40 Score=321.03 Aligned_cols=279 Identities=20% Similarity=0.257 Sum_probs=224.1
Q ss_pred hHHHHHHHhcccceeeecc--CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec
Q psy2835 3 AFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~--~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i 80 (305)
++|++.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+
T Consensus 65 ~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 65 DYIFQNISEFATKPCLINGPTGHVYTYSDVHVI-SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAA 143 (979)
T ss_dssp HHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHH-HHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEee
Confidence 5778888999998877664 678999999996 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCC---CCCcccHHHHHHhccCCCCchhHH
Q psy2835 81 YTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD---KPGVISWDELMELGRAAPDESLDR 157 (305)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 157 (305)
+|.++.+++.+++++++++++|++... .+.+..+.... .. .++.+++... ..+...+.++....... ....
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 217 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARY-VDKIKPLQNDD-GV-VIVCIDDNESVPIPEGCLRFTELTQSTTEA---SEVI 217 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTT-TTTSHHHHHTS-CC-EEEECCCCTTSCCCTTEEEGGGTSSCCSGG---GGGS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHH-HHHHHHHhhcC-Cc-eEEEeCCcccccCCcccccHHHHhhccccc---cccC
Confidence 999999999999999999999999763 33333333222 22 3344443211 12334454443322110 0001
Q ss_pred hhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHH----hhccCCCCceEEEeCchhHHHHHHHHHHHHHHhC
Q psy2835 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ----YFKLESAALSVISFLPLSHIAAQTVDIYSVMTVA 233 (305)
Q Consensus 158 ~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G 233 (305)
......++++++|+|||||||.||||++||+++...+..... .+++ .++|++++.+|++|.+|+...++.++..|
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCC-CSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccC-CCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 112357799999999999999999999999999988776543 3456 88999999999999999977789999999
Q ss_pred cEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHHH
Q psy2835 234 ATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290 (305)
Q Consensus 234 ~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~~ 290 (305)
+++++.+.++ +..+++.++++++|++.++|+++..|++.......++++||.++++
T Consensus 297 ~~~v~~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~g 352 (979)
T 3tsy_A 297 AAILIMPKFE-INLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSG 352 (979)
T ss_dssp CEEEECSSCC-HHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEES
T ss_pred cEEEEeCCCC-HHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEc
Confidence 9999998776 6899999999999999999999999998877777788888865543
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.9e-39 Score=295.34 Aligned_cols=258 Identities=14% Similarity=0.152 Sum_probs=208.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 8 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~-~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 8 DSIEQFAQTQADFPVYDCLGERRTYGQLKRD-SDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp HHHHHHHHHSTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHCCCCcceecCCCeecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCc
Confidence 6788999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhcc-CCCCchhHHhhhc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR-AAPDESLDRVLET 161 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 161 (305)
.++.+++.++++++++++++++.+.. ....... ...+.++..... ..+... ...
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~~~~--------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~----~~~ 141 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIEEFP--------LTIEGIS-------------LVSLSEIESAKLAEMPYER----THS 141 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESSCCC--------SCCTTSE-------------EEEHHHHHHHHHHTCCCCC----SSC
T ss_pred cccHHHHHHHHHhCCCCEEEecCccc--------cccccCc-------------ccchhhhhhcccccCCccc----CCC
Confidence 99999999999999999999987621 1111111 112333322111 011100 013
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh--hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY--FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
..++++++|+|||||||.||||++||+++.......... +++ ..++++++..|++|..+.. .++.++..|+++++.
T Consensus 142 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~~ 219 (521)
T 3l8c_A 142 VKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDV-PKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFAL 219 (521)
T ss_dssp CCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCC-CSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEEC
T ss_pred CCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCC-CCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEEc
Confidence 467999999999999999999999999999887776655 566 8899999999999988764 488999999999998
Q ss_pred CCcc--chhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH
Q psy2835 240 DKNA--LKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288 (305)
Q Consensus 240 ~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~ 288 (305)
+... ++..+++.++++++|++.++|+++..+.........++++||.++
T Consensus 220 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~ 270 (521)
T 3l8c_A 220 PKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFY 270 (521)
T ss_dssp CGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEE
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEE
Confidence 7652 368999999999999999999999998876655556677776543
No 24
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=6.1e-39 Score=294.77 Aligned_cols=253 Identities=15% Similarity=0.124 Sum_probs=204.1
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 79 ~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 79 ELFEAQAARAPDAVALLHEADELTYGALNER-ANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHHCCCCeEEECCCCcEeHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCC
Confidence 6889999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.+. .........+...+.. ......... ....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~------------~~~~~~~~~------~~~~ 211 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL--------SGRLTGTTTLYVEDEA------------ASDAPAGNL------ATGV 211 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT--------TTSSCSSEEEECCC-------------------CCCC------CCCC
T ss_pred CChHHHHHHHHHhcCCCEEEecchh--------hhcccCCcceeeeccc------------ccccccccc------CCCC
Confidence 9999999999999999999998762 1222222222211110 000000000 0134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
.++++++|+|||||||.||||++||+++.+.... ...+++ +++|++++.+|++|..+. ..++.++..|+++++.+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~ 288 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGF-GPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQ 288 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCC-STTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCC-CCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCc
Confidence 6799999999999999999999999999876544 344567 889999999999985544 558899999999999874
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~ 288 (305)
..++..+++.++++++|++.++|+++..|++.. ..++++||.++
T Consensus 289 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~lr~~~ 332 (570)
T 4gr5_A 289 NPDPLEIGELVARHGVTMLQLSASLFNFLVDEV---PEAFEGVRYAI 332 (570)
T ss_dssp SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---GGGGTTCSEEE
T ss_pred cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc---hhhCCCceEEE
Confidence 234789999999999999999999999998753 33566766443
No 25
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=5.3e-39 Score=296.62 Aligned_cols=267 Identities=17% Similarity=0.146 Sum_probs=212.2
Q ss_pred hHHHHHHHhcccceeeecc----CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEE
Q psy2835 3 AFLKLGLERYHSVCIIGFN----APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~----~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v 78 (305)
++|++.++++|+..++.+. ++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus 15 ~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 93 (590)
T 3kxw_A 15 DVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQH-AKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAV 93 (590)
T ss_dssp HHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEE
Confidence 6788999999998777552 478999999996 99999999999999999999999999999999999999999999
Q ss_pred ecCCCC---CHHHHHHHHhhCCceEEEEeChHHHHHHHHHh-ccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCch
Q psy2835 79 GMYTTN---SPEACLHCLVTSDANICVVEDDKQLEKILKVK-AQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDES 154 (305)
Q Consensus 79 ~i~~~~---~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (305)
|++|.. +.+++.++++.+++++++++.+. ...+.... ...+....+.... .+.+........
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~--- 159 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADH-IKKFTADELNTNPKFLKIPAIA----------LESIELNRSSSW--- 159 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHH-HHHHCC-----CCEETTEEEEE----------GGGCCGGGGGGC---
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHH-HHHHHHhhhhhcccccccceee----------chhccccccccC---
Confidence 999988 45789999999999999998763 23332221 2222211111111 111100000000
Q ss_pred hHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCc
Q psy2835 155 LDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAA 234 (305)
Q Consensus 155 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~ 234 (305)
......++++++|+|||||||.||||++||+++..++......+++ +++|++++.+|++|.+|+...++.++..|+
T Consensus 160 ---~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~ 235 (590)
T 3kxw_A 160 ---QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSWLPPHHDMGLIGCILTPIYGGI 235 (590)
T ss_dssp ---CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHTTTHHHHHHTC
T ss_pred ---CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCC-CCcCeEEEecCCCcchhhHHHHHHHHhcCc
Confidence 0123467999999999999999999999999999999998888999 999999999999999998766899999999
Q ss_pred EEEEeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHHHH---HHHhhcccChHHHHH
Q psy2835 235 TLWFADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIHEK---LMAVGKQTTGVKRWI 288 (305)
Q Consensus 235 ~~v~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~---~~~~~~~~~sl~~~~ 288 (305)
++++.+... +|..+++.++++++|++.++|.++..+++. ......++++||.++
T Consensus 236 ~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 236 QAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp EEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred eEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 999998653 378999999999999999999999999886 333455677777544
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.4e-38 Score=292.92 Aligned_cols=264 Identities=17% Similarity=0.144 Sum_probs=213.4
Q ss_pred hHHHHHHHhcccceeeec---cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEe
Q psy2835 3 AFLKLGLERYHSVCIIGF---NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG 79 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~---~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~ 79 (305)
+++++.++++|+..+++. .++++||+||.++ ++++|++|.++|+++||+|+++++|+++++++++||+++|++++|
T Consensus 25 ~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vp 103 (576)
T 3gqw_A 25 DALDYAALSSAGMNFYDRRCQLEDQLEYQTLKAR-AEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVP 103 (576)
T ss_dssp HHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHH-HHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEee
Confidence 678899999999888865 3478999999996 999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-------HHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 80 MYTTNS-------PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 80 i~~~~~-------~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
+++.++ .+++.++++++++++++++.+. ...+.......+...... .. ..........
T Consensus 104 l~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~ 168 (576)
T 3gqw_A 104 LAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEW-LPLVNAATHDNPELHVLS-------------HA-WFKALPEADV 168 (576)
T ss_dssp ECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGG-HHHHHHHGGGCTTCEEEE-------------HH-HHHTSCCCCC
T ss_pred cCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHH-HHHHHHhhccCCcceecc-------------hh-hhhccccccc
Confidence 999998 8999999999999999999874 455555544444332211 11 1111111111
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh-hccCCCCceEEEeCchhHHHHHHHHHHHHHH
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKLESAALSVISFLPLSHIAAQTVDIYSVMT 231 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~ 231 (305)
. .....++++++|+|||||||.||||++||+++..++...... +++ .++|++++.+|++|.+|+...++.++.
T Consensus 169 ~-----~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~g~~~~~~~~l~ 242 (576)
T 3gqw_A 169 A-----LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKL-RPGDRCVSWLPFYHDMGLVGFLLTPVA 242 (576)
T ss_dssp C-----CCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCC-CTTCCEEECCCTTSHHHHHHHTHHHHH
T ss_pred c-----cCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCC-CCcceEEEcCCccccccHHHHHHHHHh
Confidence 0 013467999999999999999999999999999988876654 778 899999999999999998777888999
Q ss_pred hCcEEEEeCCc---cchhHHHHHhhhcCCcEEEechHHHHHHHHH---HHHhhcccChHHHHH
Q psy2835 232 VAATLWFADKN---ALKGSLINTLLEVRPHVFLAVPRVWEKIHEK---LMAVGKQTTGVKRWI 288 (305)
Q Consensus 232 ~G~~~v~~~~~---~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~---~~~~~~~~~sl~~~~ 288 (305)
.|+++++.+.. ..|..+++.++++++|++.++|+++..+.+. ......++++||.++
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 305 (576)
T 3gqw_A 243 TQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAG 305 (576)
T ss_dssp TTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEE
T ss_pred cCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhh
Confidence 99999988752 2368999999999999999999999887653 334455677776443
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.1e-38 Score=293.06 Aligned_cols=252 Identities=14% Similarity=0.076 Sum_probs=203.8
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
+++++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|++|
T Consensus 31 ~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 31 ARFSEMAALHPHREAIRDRFGSVDYRQLLDS-AEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhCCCCeEEEcCCCcCcHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCc
Confidence 5788999999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.... .......... ..... ...... .....
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~~~~~--------~~~~~~~~~~-~~~~~---------------~~~~~~----~~~~~ 161 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDCSTTP--------TPANGLPCVP-VRHLP---------------AAPASV----ARPCF 161 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECCSSC--------CCCTTSCEEE-GGGCC---------------CCCCCS----SCCCC
T ss_pred cChHHHHHHHHHhCCCcEEEecCccc--------ccccCCceee-eccCC---------------cCCccc----cCCCC
Confidence 99999999999999999999765421 0111111111 11000 000000 00123
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC-
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK- 241 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~- 241 (305)
.++++++|+|||||||.||||+++|+++.+.... ...+++ .++|++++..|++|..+.. .++.++..|+++++.+.
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAF-APQMRFLVNSPLSFDAATL-EIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT-CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCSS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCC-CCCCEEEEECccCHHHHHH-HHHHHHhcCCEEEeCccc
Confidence 5799999999999999999999999999876655 455677 8999999999999988864 58999999999999742
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
..++..+++.++++++|++.++|+++..|++. ...++++||.+++
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---~~~~l~~lr~v~~ 283 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDL---DPDCLGGLRQLLT 283 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH---CGGGGTTCSEEEE
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc---ChhhCCCccEEEE
Confidence 33478999999999999999999999999763 3345677764433
No 28
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-37 Score=283.85 Aligned_cols=256 Identities=16% Similarity=0.178 Sum_probs=203.0
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++|++.++++|+..++.+.++++||+||.++ ++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 43 ~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~-~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 43 QLFEEQVSKRPNNVAIVCENEQLTYHELNVK-ANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp HHHHHHHHHCTTSEEEEETTEEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHHCCCCeEEEeCCceecHHHHHHH-HHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCC
Confidence 5788899999998888888899999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.+++++++++++|++.+. ...+.. ......+..+.... + ......... ...
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~-~~~~~~----~~~~~~~~~~~~~~-------~----~~~~~~~~~------~~~ 179 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHL-VHLIHN----IQFNGQVEIFEEDT-------I----KIREGTNLH------VPS 179 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGG-HHHHTT----SCCCSEEEECCCST-------T----TTSCCSCCC------CCC
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCch-hhhhhh----ccccCceeeecchh-------h----ccccCccCC------CCC
Confidence 9999999999999999999998763 222221 11112233222210 0 000000000 134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||.||||++||+++.+........+++ +++|++++..|++|..++. .++.++..|+++++.+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~~~~~ 257 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNV-TEKDRIGQFASISFDASVW-EMFMALLTGASLYIILKD 257 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCC-CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEECCHH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCC-CCCCEEEEeCCccHHHHHH-HHHHHHHCCCEEEEcChH
Confidence 67899999999999999999999999999988888888888 9999999999999988874 588999999999998763
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
.++..+++.++++++|++.++|+++..+.+. ++++||.+++
T Consensus 258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~ 300 (563)
T 1amu_A 258 TINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLIT 300 (563)
T ss_dssp HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEE
T ss_pred hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEE
Confidence 2368999999999999999999999887542 3556654443
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.9e-37 Score=282.49 Aligned_cols=260 Identities=13% Similarity=0.115 Sum_probs=199.7
Q ss_pred hHHHHHHHhcccceeeeccC----------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHH
Q psy2835 3 AFLKLGLERYHSVCIIGFNA----------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~----------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~ 72 (305)
++|++.++++|++.++.+.+ +++||+||.++ ++++|+.|.+.|+ +||+|+++++|+++++++++||++
T Consensus 24 ~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~-~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~ 101 (562)
T 3ite_A 24 HYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNET-ANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMK 101 (562)
T ss_dssp HHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHH-HHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHH-HHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHH
Confidence 67899999999988876532 68999999996 9999999999999 799999999999999999999999
Q ss_pred cCCeEEecCCCCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCC
Q psy2835 73 AGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152 (305)
Q Consensus 73 ~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (305)
+|++++|+++.++.+++.++++++++++++++++.. .. ...+....++... ...+.+..........
T Consensus 102 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~-~~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 168 (562)
T 3ite_A 102 SGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNF-DG-----VELPPETKVLDTK-------NQSFIENLSTQDTSDI 168 (562)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTT-TT-----CCCCTTCEEEETT-------CHHHHHHHHHSCCSCC
T ss_pred hCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccc-cc-----cccCccceeeccc-------chhhhhhccccccccc
Confidence 999999999999999999999999999999986521 11 0111122222111 1123333322221111
Q ss_pred chhHHhhhccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh--------hccCCCCceEEEeCchhHHHHHHH
Q psy2835 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY--------FKLESAALSVISFLPLSHIAAQTV 224 (305)
Q Consensus 153 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~pl~~~~g~~~ 224 (305)
. ....++++++|+|||||||.||||++||+++.......... ..+ ...+++++..|++|..+. .
T Consensus 169 ~------~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 240 (562)
T 3ite_A 169 L------NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL-GGVGKFLCLASRAFDVHI-G 240 (562)
T ss_dssp C------CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGC-TTTCEEECCSCTTSTHHH-H
T ss_pred c------cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhccc-CcCceEEEecCchhhhhH-H
Confidence 1 13356889999999999999999999999999887765544 335 778999999999997775 4
Q ss_pred HHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 225 DIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 225 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
.++.++..|+++++.+....+..+.+.++++++|++.++|++++.+.. ...++++||.+++
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~ 301 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGV 301 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEE
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEE
Confidence 588999999999998876656788999999999999999998776532 3446777775543
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.9e-38 Score=286.13 Aligned_cols=232 Identities=18% Similarity=0.227 Sum_probs=189.4
Q ss_pred HHHHHHhccc-ceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC
Q psy2835 5 LKLGLERYHS-VCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83 (305)
Q Consensus 5 l~~~~~~~~~-~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~ 83 (305)
|.+.++++|+ +.++.+.++++||+||.++ ++++|..|. .|++|+++++|+++++++++||+++|++++|++|.
T Consensus 28 l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~-~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~ 101 (505)
T 3nyq_A 28 LSPAPTGAPADRPALRFGERSLTYAELAAA-AGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPK 101 (505)
T ss_dssp TSSCCCSGGGGSEEEEETTEEEEHHHHHHH-HHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEEEECTT
T ss_pred HHHHHHhCCCCCeEEEECCeeeeHHHHHHH-HHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCC
Confidence 4444556665 8888899999999999996 999997664 48899999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhccC
Q psy2835 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIA 163 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 163 (305)
++.+++.++++++++++++++.+.. ..........+. ++... ...... ....
T Consensus 102 ~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~-~~~~~---------------~~~~~~------~~~~ 153 (505)
T 3nyq_A 102 SGDKELAHILSDSAPSLVLAPPDAE------LPPALGALERVD-VDVRA---------------RGAVPE------DGAD 153 (505)
T ss_dssp CCHHHHHHHHHHHCCSEEEECTTCC------CCGGGTTSEEEE-CCTTC---------------CCCCCC------CCCC
T ss_pred CCHHHHHHHHHHCCCCEEEECCccc------cchhhccccccc-ccccc---------------ccCCCC------CCCC
Confidence 9999999999999999999986521 001111222211 11100 000000 1346
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCcc
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 243 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~ 243 (305)
++++++|+|||||||.||||++||+++...+......+++ .++|++++.+|++|.+|+...++.++..|+++++.+.+.
T Consensus 154 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~ 232 (505)
T 3nyq_A 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW-TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFS 232 (505)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTC-CTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCC
T ss_pred CCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCC-CCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 7899999999999999999999999999999998888999 999999999999999999878899999999999998766
Q ss_pred chhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 244 LKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 244 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
+..+++.+ ++++|+++++|+++..+++.
T Consensus 233 -~~~~~~~i-~~~~t~~~~~P~~~~~l~~~ 260 (505)
T 3nyq_A 233 -TEGAAREL-NDGATMLFGVPTMYHRIAET 260 (505)
T ss_dssp -HHHHHHHH-TTTCCEEEECHHHHHHHHHH
T ss_pred -hHHHHHHH-hhCCeEEEehHHHHHHHHHh
Confidence 68888888 88999999999999999874
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.8e-35 Score=290.91 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=200.2
Q ss_pred hHHHHHHHhcccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~ 82 (305)
++++..++++|+..++.+.++++||+||.++ ++++|++|.+.|+++|++|+++++|+++++++++||+++|++++|++|
T Consensus 468 ~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~-a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 468 YWFKEAVNANPDAPALTYSGQTLSYRELDEE-ANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp HHHHHHHHHCTTSEEEESSSCEEEHHHHHHH-HHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHHHHHhCCCCeEEEECCeeEcHHHHHHH-HHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECC
Confidence 5788899999999999899999999999996 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhCCceEEEEeChHHHHHHHHHhccCCCccEEEEccCCCCCCCcccHHHHHHhccCCCCchhHHhhhcc
Q psy2835 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETI 162 (305)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 162 (305)
.++.+++.++++++++++++++.... .. ....+.....+.+++.. .. ......+. ...
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~~-~~----~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~-------~~~ 604 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEMK-EQ----AAELPYTGTTLFIDDQT---------RF-EEQASDPA-------TAI 604 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTTC-TT----STTCCCCSEEEESSCGG---------GG-GSCSSCCC-------CCC
T ss_pred CCHHHHHHHHHHHcCCCEEEECcchh-hh----hhccCCCCcEEEecccc---------cc-ccccCCCC-------CCC
Confidence 99999999999999999999987631 11 11122223333332210 00 00000010 134
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
.++++++|+|||||||+||||+++|+++.+. ......+++ +++|++++..|++|..+ ++.++.++..|+++++.+..
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~-~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~ 681 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAF-SDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEH 681 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCC-CTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCC-CCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChh
Confidence 6799999999999999999999999999865 334455677 88999999999998665 46699999999999999853
Q ss_pred --cchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 243 --ALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 243 --~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
.++..+.+.+++++||++.++|++++.+.+.
T Consensus 682 ~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~ 714 (1304)
T 2vsq_A 682 TLLDTERLTDLILQENVNVMFATTALFNLLTDA 714 (1304)
T ss_dssp GTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhh
Confidence 2378999999999999999999999999764
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.87 E-value=2.6e-23 Score=179.87 Aligned_cols=135 Identities=17% Similarity=0.186 Sum_probs=113.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCc
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKN 242 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~ 242 (305)
..+++++|+|||||||.||||++||+++.+++......+++ +++|++++.+|++|.+|+.. ++.++..|+++++.+..
T Consensus 35 ~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 35 LGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSL-GPGTRALVCLNVGYIAGLMM-LVRGMELDWELTVTEPT 112 (358)
T ss_dssp HHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTC-CTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEEECCC
T ss_pred CCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCC-CCCCEEEEECChHHHHHHHH-HHHHHHhCcEEEecCcc
Confidence 45899999999999999999999999999999999999999 99999999999999999865 88899999999998765
Q ss_pred cchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH----------HHHHHhhhHHHhhh
Q psy2835 243 ALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA----------NYAKSTSLQHYMAY 303 (305)
Q Consensus 243 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~----------~~a~~~g~~~~~~~ 303 (305)
. +.++.++++++|++.++|+++..|+++.. ...++++||.+++ .+..+.|+++++.|
T Consensus 113 ~---~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~Y 179 (358)
T 4gs5_A 113 A---NPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSY 179 (358)
T ss_dssp S---CTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEE
T ss_pred c---cHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheecccccCceEEecc
Confidence 4 34678999999999999999999988654 3446788775544 34555666666655
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.79 E-value=9.7e-20 Score=161.84 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=113.5
Q ss_pred CC-CceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 AT-NECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~-~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.+ +++++|+|||||||.||+|++||+++........ ..+++ .++|++++..|+.|..+....++.++..|+++++
T Consensus 83 ~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 83 DMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGI-RKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp CHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTC-CTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCC-CCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 44 8899999999999999999999999987665553 34477 8999999999998777777778899999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
.+..+ +..+++.++++++|++.++|+++..|++.......+ +++||.++++ +...+|+++++.|
T Consensus 162 ~~~~~-~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y 238 (436)
T 3qov_A 162 AAAGN-SKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSF 238 (436)
T ss_dssp CCSCC-HHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEE
T ss_pred CCCCC-HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecC
Confidence 87765 699999999999999999999999999987776554 6677754433 3333477776655
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.75 E-value=1e-18 Score=155.31 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=109.7
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCch-hHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++++++++|||||||.||+|++||+++........ ..+++ +++|++++.+|+ +|..++. ..+.++..|++++
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~ 164 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGA-RRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI 164 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence 3568999999999999999999999999987664433 35677 899999999998 6766654 4788999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+..+ ++.+++.+++++||++.++|+++..|++.......+ ++++|.++++ +.+.+|+++++.|
T Consensus 165 ~~~~~~-~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y 242 (437)
T 2y27_A 165 PFGGGQ-TEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIY 242 (437)
T ss_dssp CCCSCC-HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEE
T ss_pred eCCCCC-HHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecC
Confidence 887765 799999999999999999999999999877654433 3666644332 2233577776665
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.75 E-value=1.3e-18 Score=154.94 Aligned_cols=139 Identities=11% Similarity=0.112 Sum_probs=109.5
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCch-hHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++++++++|||||||.||+|++||+++........ ..+++ .++|++++..|+ +|..+. ...+.++..|++++
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGG-RPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVV 166 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTC-CTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEE
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCC-CCCCEEEEeccCcccccHH-HHHHHHHHcCCEEE
Confidence 3568999999999999999999999999987655433 35677 899999999999 465554 44788999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcc--cChHHHHHHH-----------HHHHhhhHHHhhh
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQ--TTGVKRWIAN-----------YAKSTSLQHYMAY 303 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--~~sl~~~~~~-----------~a~~~g~~~~~~~ 303 (305)
+.+..+ ++.+++.|+++++|++.++|+++..|++.......+ +++||.++++ +.+.+|+++++.|
T Consensus 167 ~~~~~~-~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~Y 244 (443)
T 2y4o_A 167 PMSGGQ-TEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIY 244 (443)
T ss_dssp CCCSCC-HHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred ECCCCC-HHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEecc
Confidence 888765 799999999999999999999999999877655433 3666644332 2333577776655
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.74 E-value=4e-19 Score=154.45 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=96.3
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHH---HhhccCCCCceEEEeCch-hHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII---QYFKLESAALSVISFLPL-SHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++++++|+|||||||.||+|.++|+++........ ...++ .++|++++.+|+ +|..|+.. .+.++..|+ ++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G~-~v 164 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPG-RPSGNTLAAIPTGPHIVGAIN-KERALRLGG-MF 164 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTT-CCCCEEEECSCCTTCHHHHHH-HHHHHHTTS-CE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCC-CCcceEEEecCCCchhhhHHH-HHHHHHcCC-EE
Confidence 3678899999999999999999999999999887543 44566 889999999999 99888866 566688999 55
Q ss_pred EeCCccchh-----------------------HHHHHhhhcCCcEEEechHHHHHHHHHHHHhhcccChHHHHHH
Q psy2835 238 FADKNALKG-----------------------SLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289 (305)
Q Consensus 238 ~~~~~~~~~-----------------------~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~sl~~~~~ 289 (305)
+...++ |. .+++.++++++|++.++|+++..|++.......++++||.+++
T Consensus 165 ~~~~~d-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSIDID-PRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITL 238 (369)
T ss_dssp ECCCCC-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEE
T ss_pred ECccCC-hHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEE
Confidence 554433 44 7777999999999999999999998876554455666664443
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=94.29 E-value=0.76 Score=39.99 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|.+.+.. .+..++..+...|+.++|++....+-+ ...+...++++..|+.+++++. .+.+.+...+++.++.++
T Consensus 109 ~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 109 GYTAADIDT-WANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 378999888 477777777788999999998887753 3344567888899999987765 478899999999999999
Q ss_pred EEeChH
Q psy2835 102 VVEDDK 107 (305)
Q Consensus 102 ~~~~~~ 107 (305)
++....
T Consensus 187 ~~~Ps~ 192 (437)
T 2y27_A 187 MVTPSY 192 (437)
T ss_dssp EECHHH
T ss_pred EECHHH
Confidence 988764
No 38
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=94.27 E-value=0.6 Score=40.61 Aligned_cols=104 Identities=12% Similarity=0.042 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC--ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFN--APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n--~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|.+.+.. .+..++..+...|+.++|++....+- ....+..+++++..|+..++.+.. .++.+...+++.++.++
T Consensus 105 ~~th~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 105 VHSQHDLDS-WANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEHHHHHH-HHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EECHHHHHH-HHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 389999988 58888888888899999999888764 334455678889999998877654 77889999999999999
Q ss_pred EEeChHHHHHHHHH-hc-----cCCCccEEEEccC
Q psy2835 102 VVEDDKQLEKILKV-KA-----QCPKLKAIVQYEG 130 (305)
Q Consensus 102 ~~~~~~~~~~~~~~-~~-----~~~~~~~~i~~~~ 130 (305)
+..... +..+.+. .. ....++.+++-++
T Consensus 183 ~~~P~~-~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 183 HAIPSY-AIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp ECCHHH-HHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred EECHHH-HHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 988764 3333332 11 1345666664443
No 39
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=94.23 E-value=0.73 Score=40.18 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=66.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+|.+.+.. .+..++..+...|+.++|++....+-+ ...+...++++..|+.+++++.. +.+.+...+++.++.++
T Consensus 111 ~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 111 GYTARDIDT-WANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred ecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 388999988 477777777788999999998887753 33455678888999998887754 78899999999999999
Q ss_pred EEeChH
Q psy2835 102 VVEDDK 107 (305)
Q Consensus 102 ~~~~~~ 107 (305)
++....
T Consensus 189 ~~~Ps~ 194 (443)
T 2y4o_A 189 LVTPSY 194 (443)
T ss_dssp EECHHH
T ss_pred EECHHH
Confidence 988764
No 40
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=91.06 E-value=4.4 Score=36.21 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=77.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. +.+| -.+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 34 ~~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 34 NHSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGI-QQGDVIMLFLPSSPE--FVLAFLGASHRGAIITA 103 (536)
T ss_dssp GSTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred cCCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHHhCCEEec
Confidence 3577888664 2222 468999999877766655 467 889999999888653 34458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....++.+...++..++..+...+.....+.+
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 8877767899999999999999998876666544
No 41
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=90.81 E-value=1.8 Score=38.91 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=79.6
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.+..+.++ ..+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+..
T Consensus 33 ~p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vpl 105 (550)
T 3rix_A 33 YALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGL-NTNHRIVVCSENSLQ--FFMPVLGALFIGVAVAPA 105 (550)
T ss_dssp HHTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEC
T ss_pred CCCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEcCCccc--HHHHHHHHHHcCCEEeec
Confidence 4566676655444433 4799999998877766554 67 899999999887653 344589999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEK 273 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~ 273 (305)
+....++.+...++..++.+++..+.....+.+.
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 106 NDIYNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 8777678899999999999999998877766543
No 42
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=90.42 E-value=4.8 Score=36.06 Aligned_cols=107 Identities=13% Similarity=0.028 Sum_probs=79.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++....+..+ -..-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 31 ~~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 106 (549)
T 3g7s_A 31 KFGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRKGV-RKGEHVGVCIPNSID--YVMTIYALWRVAATPVP 106 (549)
T ss_dssp HHTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCCEEEc
Confidence 35688887754322111 1235789999998877766554 67 899999999987653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....++.+...++..++..+...+.....+..
T Consensus 107 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 107 INPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 9877767889999999999999998877666543
No 43
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=89.89 E-value=3.4 Score=36.59 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=77.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. .+-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 18 ~~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 18 LFPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGV-HTGDRVAILSQNCSE--MIELIGAVALIGAILLP 85 (509)
T ss_dssp HSTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEE
T ss_pred HCCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEe
Confidence 4678888764 235799999999887766654 67 889999999987653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
.+....++.+...++..++..+...+.....+..
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 119 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAG 119 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCceEEEECcchhhhHHh
Confidence 9877767888999999999999998876665433
No 44
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=89.20 E-value=6.1 Score=35.33 Aligned_cols=101 Identities=11% Similarity=0.035 Sum_probs=76.8
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++....+ ..-.+|++.+...+..+... .++ .++|++...++-+.- ++..+++++..|+..+.
T Consensus 30 ~~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vp 101 (541)
T 1v25_A 30 LFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGV-GVGDRVATLGFNHFR--HLEAYFAVPGMGAVLHT 101 (541)
T ss_dssp HSTTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred hCCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHhcCcEEEe
Confidence 35677777643211 34579999999877766554 467 889999999887653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...++..++..+...+.....+
T Consensus 102 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 88776678899999999999999988766554
No 45
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=88.28 E-value=7.3 Score=35.13 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
.++.++++.... .| ....+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Ga~~vp 128 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGL-QRGDRVAVVLPRVPE--WWLVILGCIRAGLIFMP 128 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCC-CTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCeEEEe
Confidence 567888765421 12 235799999998777665543 67 889999999887653 34458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...++..++..+...+.....+
T Consensus 129 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 88776678899999999999999887766554
No 46
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=88.01 E-value=6.9 Score=34.55 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=73.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. . .+..+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 14 ~~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 83 (504)
T 1t5h_X 14 RAPDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGL-RPQQRVAVVAPNSAD--VVIAILALHRLGAVPAL 83 (504)
T ss_dssp HCTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHhCcEEEe
Confidence 36677787642 1 235799999998877666554 67 889999999887753 34458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEe--chHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLA--VPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~--~P~~~~~l 270 (305)
.+....++.+...++..++..+.. .+.....+
T Consensus 84 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 84 LNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp ECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cCCccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 887766788889999999999888 65544433
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=87.65 E-value=7.8 Score=34.39 Aligned_cols=100 Identities=10% Similarity=-0.009 Sum_probs=77.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++.. | +...+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 28 ~~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vp 97 (517)
T 3r44_A 28 VSPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGI-AKGDRVALLMPNSVE--FCCLFYGAAKLGAVAVP 97 (517)
T ss_dssp HSTTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCC-CCcCEEEEEcCCCHH--HHHHHHHHHHhCcEEEe
Confidence 46778887642 1 235799999998877766654 67 889999999987653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
.+....++.+...++..++.++...+.....+.
T Consensus 98 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 130 (517)
T 3r44_A 98 INTRLAAPEVSFILSDSGSKVVIYGAPSAPVID 130 (517)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cCcccCHHHHHHHHHhcCceEEEECCchHHHHH
Confidence 887776788999999999999998876655543
No 48
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=87.59 E-value=10 Score=33.12 Aligned_cols=110 Identities=8% Similarity=0.023 Sum_probs=78.4
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
...++.++++.........-....+|++.+...+..+...+.-. .++|++...++-+.- ++..+++++..|+..+.+
T Consensus 35 ~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 35 RLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLE--YVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp HHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEE
T ss_pred HhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHH--HHHHHHHHHHhCcEEEee
Confidence 34678888776542211111347899999999888877766321 368898888887653 344589999999999988
Q ss_pred CC---ccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 240 DK---NALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 240 ~~---~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
+. ....+.+...++..++..+...+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 65 2224788889999999999998877665543
No 49
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=87.18 E-value=8.3 Score=34.68 Aligned_cols=95 Identities=12% Similarity=0.066 Sum_probs=73.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. ..-.+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+.
T Consensus 51 ~~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 51 KRPNNVAIVC---------ENEQLTYHELNVKANQLARIFIEKGI-GKDTLVGIMMEKSID--LFIGILAVLKAGGAYVP 118 (563)
T ss_dssp HCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEE
T ss_pred HCCCCeEEEe---------CCceecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEEE
Confidence 3677888763 12479999998877766554 467 889999998887653 34458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWE 268 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~ 268 (305)
.+....++.+...++..++..++..+....
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 887776788889999999999998876543
No 50
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=87.03 E-value=15 Score=32.24 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=68.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.+|++.+... +.... ...++.++|++...+|-... .+..+++++..|+..+..+ ..+++.+...+++.++..+.
T Consensus 182 ~~th~~~~~~-~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 256 (501)
T 3ipl_A 182 PQTFRNHYAS-AIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHIS 256 (501)
T ss_dssp EEEHHHHHHH-HHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEE
T ss_pred EEeHHHHHHH-HHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEE
Confidence 4888888873 55443 45688999998888776433 2334677888899888776 47889999999999999999
Q ss_pred EeChHHHHHHHHHh-ccCCCccEEEEc
Q psy2835 103 VEDDKQLEKILKVK-AQCPKLKAIVQY 128 (305)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~~i~~ 128 (305)
..... +..+.+.. .....++.++.-
T Consensus 257 ~~P~~-~~~l~~~~~~~~~~lr~i~~g 282 (501)
T 3ipl_A 257 LVPQT-LNWLMQQGLHEPYNLQKILLG 282 (501)
T ss_dssp ECHHH-HHHHHHHTCCSCTTCCEEEEC
T ss_pred chHHH-HHHHHhcCCCCcCcccEEEEe
Confidence 88764 34444332 222255555543
No 51
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=86.95 E-value=8.3 Score=34.07 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=74.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.+++++...+ +-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+..
T Consensus 13 ~p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 13 LDDPHKLAIETAA------GDKISYAELVARAGRVANVLVARGL-QVGDRVAAQTEKSVE--ALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CSCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSCHH--HHHHHHHHHHTTCEEEEC
T ss_pred CCCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCHH--HHHHHHHHHHcCcEEEec
Confidence 4555666554332 23699999998877766554 67 889999999988753 344589999999999999
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
+....++.+...++..++..+...+.....+
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~ 114 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGI 114 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTT
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHH
Confidence 8777678899999999999999887654433
No 52
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=86.38 E-value=7.7 Score=35.07 Aligned_cols=98 Identities=5% Similarity=0.029 Sum_probs=75.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++..... | ....+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+
T Consensus 67 ~~~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv-~~Gd~V~l~~~~~~e--~~~~~lA~~~~Gav~v 139 (580)
T 3etc_A 67 RDSPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGI-GKGDYVMLTLKSRYD--FWYCMLGLHKLGAIAV 139 (580)
T ss_dssp HHCTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECTTCTH--HHHHHHHHHHHTCEEE
T ss_pred hhCCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCCHH--HHHHHHHHHhCCEEEE
Confidence 347888998765321 2 34679999999877766655 467 899999999987653 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
..+....++.+...++..++..+...+.
T Consensus 140 pl~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 140 PATHMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp ECCTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred eCCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 8887776789999999999999987654
No 53
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=85.12 E-value=6.3 Score=35.06 Aligned_cols=97 Identities=5% Similarity=-0.003 Sum_probs=74.8
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +-.+|++.+...+..+... .++ .++|++...+|-+.-+ +..+++++..|+..+..
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGV-HPEERILLVMLDTVAL--PVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEec
Confidence 5677776521 2468999999887776654 467 8899999998876533 34478999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
+....++.+...++..++..+...+.....+.
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 87766788999999999999999887665543
No 54
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=85.09 E-value=10 Score=36.75 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=76.4
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. +.+| -.+|++.+...+..+... .++ .++|++...+|-+. .++..+++++..|+..+.
T Consensus 73 ~~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~ns~--e~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 73 EFATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGV-NQNDVVMLLLPNCP--EFVLSFLAASFRGATATA 142 (979)
T ss_dssp GTTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECSSCH--HHHHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCC-CCcCEEEEEeCCCH--HHHHHHHHHHHcCCEEEe
Confidence 4678888764 2222 478999999877776655 467 89999999998775 334558999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHHHHHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l 270 (305)
.+....++.+...++..++.++...+.....+
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 88777678899999999999999887655444
No 55
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=85.03 E-value=12 Score=34.46 Aligned_cols=98 Identities=9% Similarity=0.118 Sum_probs=74.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh----hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY----FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++.++++... ...| ....+|++.|...+..+... .++ .++|++...+|.+-- .+..+++++..|+..+
T Consensus 94 ~~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv-~~Gd~V~i~~~~~~e--~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 94 KTPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGV-RKGDTVAVYMPMVPE--AIITLLAISRIGAIHS 167 (663)
T ss_dssp TCTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCC-CTTCEEEECCCSSHH--HHHHHHHHHHTTCEEE
T ss_pred cCCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCHH--HHHHHHHHHHcCCEEE
Confidence 357788876542 2122 34579999999877766554 456 889999999998753 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.+.....++.+...++..++.+++..+.
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEccc
Confidence 8887766789999999999999988654
No 56
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=84.47 E-value=12 Score=33.64 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=72.7
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. ..-.+|++.+...+..+... .++ .++|++...+|-+.-+ +..+++++..|+..+.
T Consensus 87 ~~pd~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vp 154 (570)
T 4gr5_A 87 RAPDAVALLH---------EADELTYGALNERANRLAHRLVGLGV-APGTLVGVHLERGFDM--VVALLAVLKAGGGYTM 154 (570)
T ss_dssp HCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred HCCCCeEEEC---------CCCcEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEE
Confidence 4678888763 12369999999887776654 467 8899999999877533 4458999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechHH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPRV 266 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~ 266 (305)
.+....++.+...++..++..+......
T Consensus 155 l~~~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 155 LDPQFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred cCCCChHHHHHHHHHhcCCCEEEecchh
Confidence 9877767889999999999998876543
No 57
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=83.86 E-value=15 Score=33.77 Aligned_cols=96 Identities=5% Similarity=0.083 Sum_probs=72.9
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++.. +..+| ..-.+|++.|...+..+... .++ .++|++...+|-+-- .+..+++++..|+..+.+
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv-~~Gd~V~i~~~~~~e--~vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGI-KKGDVVAIYMPMVPE--AAVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHcCcEEEec
Confidence 4677887643 22222 34579999999877766554 467 899999999998753 344589999999999988
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...++..++.+++...
T Consensus 163 ~~~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGGFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 8776678999999999999988754
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=83.78 E-value=22 Score=31.88 Aligned_cols=103 Identities=9% Similarity=0.031 Sum_probs=76.8
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++....+ ..-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+
T Consensus 22 ~~~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v 93 (590)
T 3kxw_A 22 LHSPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGA-KPGDRVLLLFAPGLP--LIQAFLGCLYAGCIAV 93 (590)
T ss_dssp HHCTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEE
T ss_pred HhCCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCchh--HHHHHHHHHHhCcEEE
Confidence 346788887655411 345799999998877766554 67 889999999987753 3445899999999999
Q ss_pred EeCCcc---chhHHHHHhhhcCCcEEEechHHHHHHH
Q psy2835 238 FADKNA---LKGSLINTLLEVRPHVFLAVPRVWEKIH 271 (305)
Q Consensus 238 ~~~~~~---~~~~~~~~i~~~~vt~~~~~P~~~~~l~ 271 (305)
...... ..+.+...++..++..+...+.....+.
T Consensus 94 pl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 94 PIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp EECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred EecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 887643 2367778889999999999888776653
No 59
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=83.68 E-value=12 Score=33.36 Aligned_cols=93 Identities=9% Similarity=0.068 Sum_probs=72.3
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++. ..-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+
T Consensus 41 ~~~p~~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~~--~~~~~lA~~~~Gav~v 108 (544)
T 3o83_A 41 QSHPHSLAIIC---------GERQLSYIELDRLSTNLATRLAEKGL-GKGDTALVQLPNVAE--FYIVFFALLKAGVVVL 108 (544)
T ss_dssp HHCTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEECCCSSHH--HHHHHHHHHHHTCEEE
T ss_pred HhCCCceEEEc---------CCCceeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCHH--HHHHHHHHHHhCcEEe
Confidence 34778888763 135799999998877766554 67 899999999887653 3445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.......++.+...++..++..+...+.
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEETT
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEccc
Confidence 8876665788889999999999987653
No 60
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=82.85 E-value=6.5 Score=35.21 Aligned_cols=98 Identities=8% Similarity=0.025 Sum_probs=74.4
Q ss_pred CceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCC
Q psy2835 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241 (305)
Q Consensus 165 ~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~ 241 (305)
+.++++.. .+ +..+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+..+.
T Consensus 40 ~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv-~~gd~V~i~~~n~~e--~~~~~la~~~~Gav~vpl~~ 109 (548)
T 2d1s_A 40 GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGL-VVDGRIALCSENCEE--FFIPVIAGLFIGVGVAPTNE 109 (548)
T ss_dssp TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEEECSSCTT--THHHHHHHHHHTCEEEEECT
T ss_pred CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCchh--HHHHHHHHHhhCCEEeccCC
Confidence 66776532 12 2469999999877766655 467 889999998887643 33447899999999998887
Q ss_pred ccchhHHHHHhhhcCCcEEEechHHHHHHHH
Q psy2835 242 NALKGSLINTLLEVRPHVFLAVPRVWEKIHE 272 (305)
Q Consensus 242 ~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 272 (305)
...++++...++..++.+++..+.....+..
T Consensus 110 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 140 (548)
T 2d1s_A 110 IYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140 (548)
T ss_dssp TSCHHHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCHHHHHHHHHhcCCeEEEEcHHHHHHHHH
Confidence 7667899999999999999998876665543
No 61
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=82.49 E-value=3.7 Score=34.59 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=57.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC--hhHHHHHHHHHHcCCeEEecCCCCCHH--------------
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA--PEWFYSDLGAIYAGGFAAGMYTTNSPE-------------- 87 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~~~~~~~~a~~~~G~~~v~i~~~~~~~-------------- 87 (305)
.+|.+.+.. .+...+..+...|+.++|++...++-+ ..-....++++..|+.+++. ..++.
T Consensus 110 ~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 110 VAYDAWIEA-LISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EECHHHHHH-HHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EECHHHHHH-HHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 378888888 477666667778999999998887752 22334455568889855543 33444
Q ss_pred ---------HHHHHHhhCCceEEEEeChH
Q psy2835 88 ---------ACLHCLVTSDANICVVEDDK 107 (305)
Q Consensus 88 ---------~~~~~l~~~~~~~v~~~~~~ 107 (305)
++...+++.++.++++....
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 67779999999999987653
No 62
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=81.34 E-value=13 Score=31.06 Aligned_cols=67 Identities=9% Similarity=-0.154 Sum_probs=50.3
Q ss_pred HHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
....+.|. ++|+.|.+....+..-..+.++|...|..++.+-|...+.+....++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 44456664 88888756666677788888888888987776655555566677899999999999764
No 63
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.50 E-value=18 Score=32.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=69.7
Q ss_pred CCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHh---hccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEe
Q psy2835 163 ATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY---FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFA 239 (305)
Q Consensus 163 ~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~ 239 (305)
.++.++++. + .-.+|++.+...+..+... .++ .++|++...+|-+.- ++..+++++..|+..+..
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGI-QQKDRVVVQLPNIKE--FFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTC-CTTCEEEECCCSSHH--HHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHHcCeEEecC
Confidence 567778753 1 2479999999877766654 467 899999999887653 344589999999998888
Q ss_pred CCccchhHHHHHhhhcCCcEEEech
Q psy2835 240 DKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 240 ~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.....++.+...++..++..+...+
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecc
Confidence 7666568888999999999988765
No 64
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=79.25 E-value=16 Score=32.34 Aligned_cols=91 Identities=9% Similarity=0.069 Sum_probs=69.0
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. .+-.+|++.+...+..+...+ ++ .++|++...++-+. .++..+++++..|+..+.
T Consensus 16 ~~p~~~a~~~---------~~~~~Ty~el~~~~~~lA~~L~~~g~-~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~vp 83 (521)
T 3l8c_A 16 TQADFPVYDC---------LGERRTYGQLKRDSDSIAAFIDSLAL-LAKSPVLVFGAQTY--DMLATFVALTKSGHAYIP 83 (521)
T ss_dssp HSTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTCC-CTTCCEEEEECSSH--HHHHHHHHHHHTTCCEEE
T ss_pred HCCCCcceec---------CCCeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEe
Confidence 3567777653 124589999998877766554 66 88999888887765 234458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEech
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVP 264 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P 264 (305)
.+....++.+...++..++..+....
T Consensus 84 l~~~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 84 VDVHSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp EETTSCHHHHHHHHHHSCCSEEEESS
T ss_pred cCccccHHHHHHHHHhCCCCEEEecC
Confidence 87766678899999999999988754
No 65
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=79.12 E-value=16 Score=32.20 Aligned_cols=90 Identities=2% Similarity=0.074 Sum_probs=68.2
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. ..-.+|++.+...+..+...+ ++ .++|++...++-+. .++..+++++..|+..+.
T Consensus 13 ~~p~~~A~~~---------~~~~~Ty~el~~~~~~lA~~L~~~g~-~~gd~V~i~~~n~~--e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 13 ETPDQTAFVW---------RDAKITYKQLKEDSDALAHWISSEYP-DDRSPIMVYGHMQP--EMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp HSTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHHST-TCCCCEEEEESSCH--HHHHHHHHHHHTTCCEEE
T ss_pred HCCCceEEEe---------CCceEEHHHHHHHHHHHHHHHHHhCC-CCCCEEEEEeCCCH--HHHHHHHHHHHhCCEEEe
Confidence 3677888763 123689999998877766554 66 78899888877654 234458999999999998
Q ss_pred eCCccchhHHHHHhhhcCCcEEEec
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
.+....++.+...++..++..+...
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEES
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEec
Confidence 8776667888899999999988764
No 66
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=78.64 E-value=0.88 Score=41.39 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=26.7
Q ss_pred CCCceeEEEeccCCC-CCCcceEechhHHHHH
Q psy2835 163 ATNECCTLVYTSGTE-GASKPVMLSHDNITFN 193 (305)
Q Consensus 163 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~ 193 (305)
.++.+..+..||||| |+||.+.+|.+.+...
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 456778899999999 8899999999987763
No 67
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=76.01 E-value=20 Score=29.93 Aligned_cols=67 Identities=6% Similarity=-0.123 Sum_probs=53.2
Q ss_pred HHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 40 KAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 40 ~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+.+.| +.+|.+..+....+..-..+.++|...|..+...=|...+.+....++..++++++++..
T Consensus 75 ~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 75 TDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444555 577877777777888888899999999988877777777777888899999999999754
No 68
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=75.12 E-value=26 Score=31.30 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=66.7
Q ss_pred ceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccc-------hhHHHHH
Q psy2835 182 PVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNAL-------KGSLINT 251 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~-------~~~~~~~ 251 (305)
.-.+|++.+...+..+...+ ++ .++|++...+|-+.- ++..+++++..|+..+..+.... ++.+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv-~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNL-KKGDRVALIAETSSE--FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCC-CTTCEEEEECCSSHH--HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHH--HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 35799999999887766554 67 899999999988753 34458999999999998865443 3678888
Q ss_pred hhhcCCcEEEechHHHHHH
Q psy2835 252 LLEVRPHVFLAVPRVWEKI 270 (305)
Q Consensus 252 i~~~~vt~~~~~P~~~~~l 270 (305)
++..++..+.........+
T Consensus 124 l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHCCSEEEECGGGHHHH
T ss_pred HHhcCCCEEEecHHHHHHH
Confidence 8999999999887765554
No 69
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=74.37 E-value=14 Score=30.74 Aligned_cols=78 Identities=10% Similarity=-0.032 Sum_probs=52.5
Q ss_pred ccchHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGGLA---KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la---~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 100 (305)
.+++.+... +..... ..+...++++||+|+|+...+.-...+.++....|+.++.++.+ ++-..+.+..+++.
T Consensus 136 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~---~~r~~~~~~~Ga~~ 211 (348)
T 4eez_A 136 GLDPIEASS-ITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN---QDKLNLAKKIGADV 211 (348)
T ss_dssp TSCHHHHHH-HHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC---HHHHHHHHHTTCSE
T ss_pred CCCHHHHhh-cccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc---HHHhhhhhhcCCeE
Confidence 467766543 232222 23456689999999999887777777777776778877776654 33456677888888
Q ss_pred EEEeC
Q psy2835 101 CVVED 105 (305)
Q Consensus 101 v~~~~ 105 (305)
++-..
T Consensus 212 ~i~~~ 216 (348)
T 4eez_A 212 TINSG 216 (348)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 87654
No 70
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=74.32 E-value=1.2 Score=40.23 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=26.1
Q ss_pred CCCceeEEEeccCCC-CCCcceEechhHHHH
Q psy2835 163 ATNECCTLVYTSGTE-GASKPVMLSHDNITF 192 (305)
Q Consensus 163 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~ 192 (305)
.++.+.+...||||| |++|.+.+|.+.+-.
T Consensus 96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 456778899999999 789999999998866
No 71
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=73.81 E-value=1.6 Score=39.59 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCCceeEEEeccCCC-CCCcceEechhHHHHH
Q psy2835 163 ATNECCTLVYTSGTE-GASKPVMLSHDNITFN 193 (305)
Q Consensus 163 ~~~~~~~i~~TSGtT-G~pK~v~~s~~~l~~~ 193 (305)
.++.+.+..-||||| |++|-+++|.+.+-..
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 566778899999999 7899999999988663
No 72
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=73.12 E-value=35 Score=31.08 Aligned_cols=91 Identities=7% Similarity=-0.007 Sum_probs=69.6
Q ss_pred ccCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++. + .-.+|++.+...+..+...+ ++ .++|++...++-+.- ++..+++.+..|+..+
T Consensus 38 ~~~Pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv-~~g~~V~i~~~~s~~--~vva~lailkaGa~~v 105 (620)
T 4dg8_A 38 ALHPHREAIRD---R------FGSVDYRQLLDSAEQLSDYLLEHYP-QPGVCLGVYGEYSRE--SITCLLAILLSGHHYL 105 (620)
T ss_dssp HHCTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHCC-SSCCEEEEESSSCHH--HHHHHHHHHHTTCEEE
T ss_pred HhCCCCeEEEc---C------CCcCcHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCCHH--HHHHHHHHHHhCCEEE
Confidence 34678888763 1 23699999998777766554 67 889999999887653 3455899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEec
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
..+....++.+...++..++.++...
T Consensus 106 pld~~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 106 YIDLKQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp ECCTTSCHHHHHHHHHHHTEEEEEEC
T ss_pred eeCccChHHHHHHHHHhCCCcEEEec
Confidence 99877766788888888899888743
No 73
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.13 E-value=24 Score=32.04 Aligned_cols=90 Identities=10% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeC
Q psy2835 164 TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240 (305)
Q Consensus 164 ~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~ 240 (305)
++.++++- | .-.+|++.+...+..+...+ ++ .++|++...++-+.- ++..+++++..|+..+..+
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv-~~gd~V~l~~~~s~~--~vva~lA~l~aG~~~vpl~ 106 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGI-KPGETALVQLGNVAE--LYITFFALLKLGVAPVLAL 106 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEEECCSSHH--HHHHHHHHHHHTCEEEEEC
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCcHH--HHHHHHHHHhcCeEEccCC
Confidence 67777662 1 34699999998877766654 67 889999999987653 3455899999999999887
Q ss_pred CccchhHHHHHhhhcCCcEEEechH
Q psy2835 241 KNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 241 ~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
....++.+...++..++..+...+.
T Consensus 107 ~~~~~~~l~~~l~~~~~~~vl~~~~ 131 (617)
T 3rg2_A 107 FSHQRSELNAYASQIEPALLIADRQ 131 (617)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEEETT
T ss_pred ccccHHHHHHHHhhcCceEEEeccc
Confidence 7665688888999999999887653
No 74
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=69.83 E-value=38 Score=29.75 Aligned_cols=90 Identities=3% Similarity=-0.042 Sum_probs=66.9
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh----ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
..++.++++. .+-.+|++.+...+..+...+ +. .+++++...++-+. .++..+++++..|+..+
T Consensus 13 ~~p~~~Al~~---------~~~~~Ty~eL~~~~~~~A~~L~~~~~~-~~g~~V~i~~~n~~--~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 13 TYPQTDAFRS---------QGQSLTYQELWEQSDRAAAAIQKRISG-EKKSPILVYGHMEP--HMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp HSTTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHTTTSCS-SSCCCEEEEESSCH--HHHHHHHHHHHHTCCEE
T ss_pred HCCCCeEEEc---------CCceeeHHHHHHHHHHHHHHHHHhcCC-CCCCeEEEEecCCH--HHHHHHHHHHHhCCEEE
Confidence 4667888653 235799999999887776655 23 56688887776553 22344889999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEec
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAV 263 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~ 263 (305)
..+....++.+...++..++.++...
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEES
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEec
Confidence 88776667889999999999988763
No 75
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=69.69 E-value=37 Score=29.37 Aligned_cols=66 Identities=11% Similarity=-0.099 Sum_probs=49.7
Q ss_pred HHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 40 KAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 40 ~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
....+.|. .+|....+....+..-..+.+++...|..++.+=|...+.+....++..++++++++.
T Consensus 163 ~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 163 TDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34456674 6776566666668888888888999998877665665666777889999999999975
No 76
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=67.79 E-value=27 Score=28.93 Aligned_cols=86 Identities=9% Similarity=-0.024 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHH---HHHHHHHc--CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 25 WFYSDLGAIYAGG---LAKAFLKL--GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 25 ~Ty~el~~~~~~~---la~~L~~~--g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
+++.+... +... ..+.|.+. ++++|++|+|......-...+.+|-..-|..++.++.+ ++-..+++..+++
T Consensus 143 ~~~~~aa~-l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~---~~~~~~~~~lGa~ 218 (345)
T 3jv7_A 143 LDPVAAAP-LTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD---DDRLALAREVGAD 218 (345)
T ss_dssp CCHHHHGG-GGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC---HHHHHHHHHTTCS
T ss_pred CCHHHhhh-hhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 67666553 2221 12334453 78999999999886666777777766657777766544 3444567788898
Q ss_pred EEEEeChHHHHHHHH
Q psy2835 100 ICVVEDDKQLEKILK 114 (305)
Q Consensus 100 ~v~~~~~~~~~~~~~ 114 (305)
.++...+...+.+.+
T Consensus 219 ~~i~~~~~~~~~v~~ 233 (345)
T 3jv7_A 219 AAVKSGAGAADAIRE 233 (345)
T ss_dssp EEEECSTTHHHHHHH
T ss_pred EEEcCCCcHHHHHHH
Confidence 887665433344443
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=67.33 E-value=68 Score=28.51 Aligned_cols=102 Identities=14% Similarity=-0.001 Sum_probs=71.8
Q ss_pred ccCCCceeEEEeccCCCCCC--cceEechhHHHHHHHHHHHhhccC-CCCceEEEeCchhHHHHHHHHHHHHHHhCcEEE
Q psy2835 161 TIATNECCTLVYTSGTEGAS--KPVMLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTVDIYSVMTVAATLW 237 (305)
Q Consensus 161 ~~~~~~~~~i~~TSGtTG~p--K~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 237 (305)
...++.++++... |..+.. ..-.+|++.+...+..+...+.-. .++|++...++-+.-+ +..+++++..|+..+
T Consensus 31 ~~~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 31 KTHPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIA--FAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHCTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHHHTTCSSCEEEEECCSCHHH--HHHHHHHHHTTCEEE
T ss_pred HHCCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEE
Confidence 3467888876543 222322 235799999999887766654210 2589999888877533 445899999999999
Q ss_pred EeCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 238 FADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 238 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
..+....++.+...++..++..++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 8887776788889999999998776543
No 78
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=67.10 E-value=50 Score=26.93 Aligned_cols=79 Identities=9% Similarity=-0.122 Sum_probs=51.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.-+|++-. +..+...+.+.|. ++|+.|.. ...+..-..+.++|...|..+..+-|...+......++..++++++
T Consensus 43 tgSfK~R~---a~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 118 (313)
T 2q3b_A 43 ANSVKDRI---GVAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELIL 118 (313)
T ss_dssp TSBTHHHH---HHHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCcHHHHH---HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 34555433 3333344455554 56665544 6666677777778888998777655554445666778899999999
Q ss_pred EeCh
Q psy2835 103 VEDD 106 (305)
Q Consensus 103 ~~~~ 106 (305)
++..
T Consensus 119 ~~~~ 122 (313)
T 2q3b_A 119 TPGA 122 (313)
T ss_dssp ECGG
T ss_pred eCCC
Confidence 9863
No 79
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=66.56 E-value=43 Score=27.91 Aligned_cols=96 Identities=16% Similarity=0.011 Sum_probs=60.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.+|++.+.. .+...+ ...++.++|++...+|-... .+..++..+..|+..+..++.... ...+++.++..+.
T Consensus 56 ~~th~~l~~-~~~~~~---~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 56 TVTRAQLAA-SAAMTG---KALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVA 128 (358)
T ss_dssp EEEHHHHHH-HHHHHH---HHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEE
T ss_pred EEeHHHHHH-HHHHHH---HHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEE
Confidence 489998887 365544 34688999999888775433 233455566677777766655432 4567888999888
Q ss_pred EeChHHHHHHHHH---hccCCCccEEEE
Q psy2835 103 VEDDKQLEKILKV---KAQCPKLKAIVQ 127 (305)
Q Consensus 103 ~~~~~~~~~~~~~---~~~~~~~~~~i~ 127 (305)
..... +..+.+. ....+.++.+++
T Consensus 129 ~~P~~-l~~ll~~~~~~~~l~~lr~v~~ 155 (358)
T 4gs5_A 129 MVPMQ-LQSILENSATSGQVDRLGKVLL 155 (358)
T ss_dssp ECHHH-HHHHHHCTTTGGGGGGGCSEEE
T ss_pred cChHH-HHHhhccccccccCCcceEEEE
Confidence 87653 3444332 223455565553
No 80
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=65.31 E-value=25 Score=29.31 Aligned_cols=56 Identities=7% Similarity=-0.225 Sum_probs=36.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-------CCHHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-------NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.++||.|++..+.... ...++...|+.++.++.. .+.+++...+++.++++|+...
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 3567877665554333 334555678777766653 6788888888766777776543
No 81
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=64.36 E-value=28 Score=30.61 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=60.5
Q ss_pred eEechhHHHHHHHHHHHhhccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEEeCCccchhHHHHHhhhcCCcEEEe
Q psy2835 183 VMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLA 262 (305)
Q Consensus 183 v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~vt~~~~ 262 (305)
-.+|++.+...+..+...+ ..++++...++-+.- ++..+++++..|+..+..+....++.+...++..++..+..
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L---~~~~~V~i~~~~~~~--~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 121 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI---GGAGRVAVWATPAME--TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLA 121 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC---C---CEEEECCSSHH--HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEE
T ss_pred eeeeHHHHHHHHHHHHhhc---cCCCEEEEEcCCCHH--HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEE
Confidence 4799999999888876654 557888888887653 34458999999999998887776788999999999999987
Q ss_pred chH
Q psy2835 263 VPR 265 (305)
Q Consensus 263 ~P~ 265 (305)
.+.
T Consensus 122 ~~~ 124 (505)
T 3nyq_A 122 PPD 124 (505)
T ss_dssp CTT
T ss_pred CCc
Confidence 653
No 82
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=63.13 E-value=62 Score=26.54 Aligned_cols=66 Identities=12% Similarity=-0.052 Sum_probs=47.0
Q ss_pred HHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 41 AFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 41 ~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
...+.| +++|....+....+..-..+.+++...|..+..+-|...+......++..++++++++..
T Consensus 56 ~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 56 DAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 445566 456654444566777777788888899987776555545566677899999999999864
No 83
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=62.51 E-value=60 Score=26.40 Aligned_cols=79 Identities=13% Similarity=-0.087 Sum_probs=50.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.-+|++-. +..+...+.+.|. ++|+.|.. ...+..-..+.++|...|..+..+-|...+..-...++..++++++
T Consensus 41 tgSfK~R~---a~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~ 116 (308)
T 2egu_A 41 GSSVKDRI---ALAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVL 116 (308)
T ss_dssp TSBTHHHH---HHHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEE
T ss_pred CCChHHHH---HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 34455433 2233344455564 56665544 5666666777777888898776655444445566778999999999
Q ss_pred EeCh
Q psy2835 103 VEDD 106 (305)
Q Consensus 103 ~~~~ 106 (305)
++..
T Consensus 117 ~~~~ 120 (308)
T 2egu_A 117 TPGA 120 (308)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9864
No 84
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=61.38 E-value=27 Score=29.40 Aligned_cols=61 Identities=13% Similarity=-0.016 Sum_probs=37.6
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhhCC--ceEEEEeC
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVTSD--ANICVVED 105 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~~~--~~~v~~~~ 105 (305)
+...++++||.|++-.+....+ .-++...|+.++.++. ..+.+++...+...+ +++|+...
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~ 137 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA 137 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC
Confidence 3344678899887766554433 3445677877665543 246778887774444 67776543
No 85
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=60.53 E-value=29 Score=28.92 Aligned_cols=52 Identities=4% Similarity=-0.165 Sum_probs=28.5
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC--------CCHHHHHHHHhhCCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT--------NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~--------~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++||.|++..+....+ ..++...|+.++.++.. .+.+++...++. +++|+..
T Consensus 112 ~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~ 171 (391)
T 4dq6_A 112 KANDKIMIQEPVYSPF---NSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILC 171 (391)
T ss_dssp CTTCEEEECSSCCTHH---HHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEE
T ss_pred CCCCEEEEcCCCCHHH---HHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEE
Confidence 4566666544433332 23444566666655543 466777777766 5555543
No 86
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=59.47 E-value=37 Score=28.15 Aligned_cols=60 Identities=8% Similarity=-0.111 Sum_probs=39.7
Q ss_pred CCCCCCeEEEEecCCh------hHHHHHHHH-HHcCCeEEecCCCC------------CHHHHHHHHhhCCceEEEEeC
Q psy2835 46 GLERYHSVCIIGFNAP------EWFYSDLGA-IYAGGFAAGMYTTN------------SPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~------~~~~~~~a~-~~~G~~~v~i~~~~------------~~~~~~~~l~~~~~~~v~~~~ 105 (305)
-+++||+|+|++|.+. +-+-..... -..|..++.-+.-. ..+++...+.+-+.++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999863 122222222 24587777543221 456688888899999999953
No 87
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=59.22 E-value=64 Score=26.54 Aligned_cols=65 Identities=12% Similarity=-0.053 Sum_probs=46.6
Q ss_pred HHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 40 KAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 40 ~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
....+.| +++++.|+- ...+..-..+.+++...|..++.+-|...+.+....++..++++++++.
T Consensus 62 ~~a~~~g~l~~~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 62 EQAEADGLLRPGATILE-PTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 3445555 466666544 4556777778888888898777665555556667788999999999986
No 88
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=58.93 E-value=38 Score=28.20 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=40.0
Q ss_pred CCCCCCeEEEEecCChh------HHHHHHHHH-HcCCeEEecCCC------------CCHHHHHHHHhhCCceEEEEeC
Q psy2835 46 GLERYHSVCIIGFNAPE------WFYSDLGAI-YAGGFAAGMYTT------------NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~------~~~~~~a~~-~~G~~~v~i~~~------------~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-+.. ...+++...+.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998842 222223333 468887754221 1355677888888999999853
No 89
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=58.62 E-value=37 Score=28.42 Aligned_cols=69 Identities=7% Similarity=-0.045 Sum_probs=40.9
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEeCh----HHHHHHHHHh
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVEDD----KQLEKILKVK 116 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~~~----~~~~~~~~~~ 116 (305)
++++||.|++..+..... ..++...|+.++.++.. .+.+++...++. ++++|+.... ..++.+.++.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTT---YYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTVNLLGNPNNFDEINKII 151 (390)
T ss_dssp SCCTTCEEEEESSSCHHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEECGGGCCCCHHHHHHHH
T ss_pred CCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEECCccChhhHHHHHHHH
Confidence 578899887766654443 33455678766655432 367788887764 5677666431 1345555554
Q ss_pred cc
Q psy2835 117 AQ 118 (305)
Q Consensus 117 ~~ 118 (305)
.+
T Consensus 152 ~~ 153 (390)
T 3b8x_A 152 GG 153 (390)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 90
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=57.28 E-value=23 Score=21.58 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=15.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~ 60 (305)
+.++..+|..+ ...+ ... .+...|.|.....
T Consensus 25 ~~v~~~~L~~~-l~~~---~~~---~~~~~V~I~aD~~ 55 (74)
T 2jwk_A 25 EGLTEEMVTQL-SRQE---FDK---DNNTLFLVGGAKE 55 (74)
T ss_dssp EEECHHHHHHH-HHHH---HHH---CTTCCEEEEECTT
T ss_pred cccCHHHHHHH-HHHH---Hhh---CCCceEEEEcCCC
Confidence 56666666664 3322 222 2334566665554
No 91
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=56.85 E-value=55 Score=27.00 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=25.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++||.|++..+....+....-++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 456665554443333322222333446555544432 345556555543 45555543
No 92
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=56.61 E-value=42 Score=28.39 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=41.1
Q ss_pred cCCCCCCeEEEEecCChh------HHHHHHHHH-HcCCeEEecCCC------------CCHHHHHHHHhhCCceEEEEeC
Q psy2835 45 LGLERYHSVCIIGFNAPE------WFYSDLGAI-YAGGFAAGMYTT------------NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~------~~~~~~a~~-~~G~~~v~i~~~------------~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.-+++||+|+|++|.+.- -+-.....+ ..|..++.-+.. ...+++...+.+-++++|+|..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 357899999999998752 222223333 468887755322 1456677888888999999953
No 93
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=55.43 E-value=39 Score=28.14 Aligned_cols=79 Identities=13% Similarity=-0.027 Sum_probs=48.4
Q ss_pred ccchHHHHHHHH--HHHH-HHHHH-cCCCCCCeEEEEecC-ChhHHHHHHHHHHcCCeE-EecCCCCCHHHHHHHHhhCC
Q psy2835 24 EWFYSDLGAIYA--GGLA-KAFLK-LGLERYHSVCIIGFN-APEWFYSDLGAIYAGGFA-AGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 24 ~~Ty~el~~~~~--~~la-~~L~~-~g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G~~~-v~i~~~~~~~~~~~~l~~~~ 97 (305)
.+++.+... +. -..| ..|.+ .++++|++|+|.... ..-.+++.+|- ..|+.+ +..+..-..++....++..+
T Consensus 139 ~l~~~~Aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (357)
T 1zsy_A 139 DIPLQSAAT-LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLG 216 (357)
T ss_dssp SSCHHHHHH-TTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTT
T ss_pred CCCHHHHhh-hcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcC
Confidence 477776543 21 1112 23334 479999999999874 45555555554 457744 44444444555566778889
Q ss_pred ceEEEEe
Q psy2835 98 ANICVVE 104 (305)
Q Consensus 98 ~~~v~~~ 104 (305)
++.++..
T Consensus 217 a~~vi~~ 223 (357)
T 1zsy_A 217 AEHVITE 223 (357)
T ss_dssp CSEEEEH
T ss_pred CcEEEec
Confidence 9888754
No 94
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=55.35 E-value=47 Score=27.58 Aligned_cols=60 Identities=5% Similarity=-0.074 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEecCChhH------HHHHHHHH-HcCCeEEecCCC------------CCHHHHHHHHhhCCceEEEEeC
Q psy2835 46 GLERYHSVCIIGFNAPEW------FYSDLGAI-YAGGFAAGMYTT------------NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~------~~~~~a~~-~~G~~~v~i~~~------------~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
-+++||+|+|++|.+.-- +-.....+ ..|..++.-+.- ...+++...+.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 478999999999987632 22223333 468887754321 1456677888888999999953
No 95
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=54.64 E-value=73 Score=27.41 Aligned_cols=53 Identities=9% Similarity=-0.131 Sum_probs=24.5
Q ss_pred EEEecCChhHHH-HHHHHHHcCCeEEecCCCCCHH--HHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFY-SDLGAIYAGGFAAGMYTTNSPE--ACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~-~~~a~~~~G~~~v~i~~~~~~~--~~~~~l~~~~~~~v~~~~~ 106 (305)
+++..++.+.+. ++.++...|-.++.-++.+... .+...+...+.+++.++..
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM 155 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 344445443332 2333444455555445554321 1223555666666666543
No 96
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=54.35 E-value=56 Score=26.90 Aligned_cols=55 Identities=16% Similarity=0.041 Sum_probs=35.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC--C--CCCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY--T--TNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~--~--~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.++||.|++..+....+. .++...|+.++.++ + ..+.+++...++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 467888877766554432 23445676655543 3 3578888888877677777764
No 97
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=52.82 E-value=95 Score=25.73 Aligned_cols=79 Identities=8% Similarity=-0.154 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+-+|++-.. ..+...+.+.|. ++|+.|+.. ..+..-..+.+++...|..++.+-|...+.+....++..++++++
T Consensus 54 tGSfKdR~a---~~~l~~a~~~g~~~~g~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~ 129 (343)
T 2pqm_A 54 MSSVKDRVG---FNIVYQAIKDGRLKPGMEIIES-TSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129 (343)
T ss_dssp TSBTHHHHH---HHHHHHHHHHTSSCTTCEEEEE-CSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCChHHHHH---HHHHHHHHHcCCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEE
Confidence 345554432 223334444554 666655444 446666667777778888766655554455667788999999999
Q ss_pred EeCh
Q psy2835 103 VEDD 106 (305)
Q Consensus 103 ~~~~ 106 (305)
++..
T Consensus 130 ~~~~ 133 (343)
T 2pqm_A 130 TEGK 133 (343)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9863
No 98
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=52.38 E-value=47 Score=27.66 Aligned_cols=63 Identities=16% Similarity=0.021 Sum_probs=42.2
Q ss_pred HHHH--cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 41 AFLK--LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 41 ~L~~--~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+.+ .++++|++|+|......-..++.+|-...|+.++.++.+ . +-..+++..+++.++-..+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~--~-~~~~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVK--E-EKLKLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESS--H-HHHHHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC--H-HHHHHHHHhCCCEEEeccc
Confidence 4455 689999999999885556666666654438876666543 3 3344566788888776443
No 99
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=52.07 E-value=51 Score=27.12 Aligned_cols=77 Identities=13% Similarity=0.015 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGG---LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~---la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 100 (305)
.+++.+... +... .-+.|...++++|++|+|......-...+.+|- ..|+.++.++.+ . +-...++..+++.
T Consensus 139 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~-~~~~~~~~lGa~~ 213 (340)
T 3s2e_A 139 KVGFVEIAP-ILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDID--D-AKLNLARRLGAEV 213 (340)
T ss_dssp TSCHHHHGG-GGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEESC--H-HHHHHHHHTTCSE
T ss_pred CCCHHHhhc-ccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--H-HHHHHHHHcCCCE
Confidence 567766542 1111 123455668999999999987556666666555 468877766543 3 3334567788888
Q ss_pred EEEeC
Q psy2835 101 CVVED 105 (305)
Q Consensus 101 v~~~~ 105 (305)
++...
T Consensus 214 ~i~~~ 218 (340)
T 3s2e_A 214 AVNAR 218 (340)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77644
No 100
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=51.60 E-value=72 Score=32.03 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=71.1
Q ss_pred cCCCceeEEEeccCCCCCCcceEechhHHHHHHHHHHHhh---ccCCCCceEEEeCchhHHHHHHHHHHHHHHhCcEEEE
Q psy2835 162 IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF---KLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWF 238 (305)
Q Consensus 162 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~ 238 (305)
..++.++++. + +-.+|++.+...+..+...+ ++ .+++++...++-+. .++..+++.+..|+..+.
T Consensus 476 ~~p~~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv-~~g~~V~i~~~~s~--~~vv~~lailkaG~~~vp 543 (1304)
T 2vsq_A 476 ANPDAPALTY---S------GQTLSYRELDEEANRIARRLQKHGA-GKGSVVALYTKRSL--ELVIGILGVLKAGAAYLP 543 (1304)
T ss_dssp HCTTSEEEES---S------SCEEEHHHHHHHHHHHHHHHHHTTC-CTTCEEEECCCSSH--HHHHHHHHHHHTTCEEEE
T ss_pred hCCCCeEEEE---C------CeeEcHHHHHHHHHHHHHHHHhcCc-CCcCEEEEEeCCCH--HHHHHHHHHHHHCCEEEE
Confidence 4677777652 1 23689999998777766553 67 88999999988775 334558999999999999
Q ss_pred eCCccchhHHHHHhhhcCCcEEEechH
Q psy2835 239 ADKNALKGSLINTLLEVRPHVFLAVPR 265 (305)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~vt~~~~~P~ 265 (305)
.+....++.+...++..++..+...+.
T Consensus 544 ldp~~p~~rl~~il~~~~~~~vl~~~~ 570 (1304)
T 2vsq_A 544 VDPKLPEDRISYMLADSAAACLLTHQE 570 (1304)
T ss_dssp CCTTSCHHHHHHHHHHHTCCEEEECST
T ss_pred ECCCCHHHHHHHHHHHcCCCEEEECcc
Confidence 987776688888899999999887654
No 101
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=51.51 E-value=75 Score=26.61 Aligned_cols=58 Identities=7% Similarity=-0.025 Sum_probs=36.4
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhC--CceEEEEeC
Q psy2835 45 LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTS--DANICVVED 105 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~--~~~~v~~~~ 105 (305)
.++++||.|++..+...... .++...|+.++.++.. .+.+++...++.. ++++|+...
T Consensus 67 l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 67 AGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp TTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 34678888887777665543 2334467776665532 4677888877754 466666654
No 102
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=49.70 E-value=1.1e+02 Score=25.30 Aligned_cols=76 Identities=12% Similarity=0.009 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCce
Q psy2835 24 EWFYSDLGAIYAGGLA---KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la---~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.+..- ..-++ +.+...++++|++|+|......-...+.+|- ..|+ .++.++.+ ++-..+++..+++
T Consensus 145 ~l~~~~aa~--~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~---~~~~~~a~~lGa~ 218 (356)
T 1pl8_A 145 NVTFEEGAL--IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDLS---ATRLSKAKEIGAD 218 (356)
T ss_dssp TSCHHHHHH--HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC---HHHHHHHHHTTCS
T ss_pred CCCHHHHHh--hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC---HHHHHHHHHhCCC
Confidence 467766542 22222 2345568999999999986555555555554 4687 66666543 3334456778888
Q ss_pred EEEEeC
Q psy2835 100 ICVVED 105 (305)
Q Consensus 100 ~v~~~~ 105 (305)
.++...
T Consensus 219 ~vi~~~ 224 (356)
T 1pl8_A 219 LVLQIS 224 (356)
T ss_dssp EEEECS
T ss_pred EEEcCc
Confidence 777544
No 103
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=49.28 E-value=1.1e+02 Score=24.99 Aligned_cols=69 Identities=10% Similarity=-0.082 Sum_probs=45.9
Q ss_pred HHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 37 GLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 37 ~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+...+.+.|. ++|+.|. ....+..-..+.++|...|..+..+-|..........++..++++++++..
T Consensus 48 ~~i~~a~~~g~~~~~~~vv-~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 48 NMVWQAEKDGTLTKGKEIV-DATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHHHHHTTSSCTTCEEE-ESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 33344555564 5565444 444566667777778888887665554444456677889999999999864
No 104
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=48.92 E-value=72 Score=26.60 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=14.0
Q ss_pred CCCCCcceEech-hHHHHHHHHHHH
Q psy2835 176 TEGASKPVMLSH-DNITFNAACIIQ 199 (305)
Q Consensus 176 tTG~pK~v~~s~-~~l~~~~~~~~~ 199 (305)
..|.+-|.++.. +.+...+.....
T Consensus 242 ~~G~r~G~~~~~~~~~~~~l~~~~~ 266 (399)
T 1c7n_A 242 IAGMGMSNIIIKNPDIRERFTKSRD 266 (399)
T ss_dssp CGGGCCEEEECCCHHHHHHHHHHHH
T ss_pred ccchheEEEEECCHHHHHHHHHHHh
Confidence 356666777765 556665554433
No 105
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=48.71 E-value=1.1e+02 Score=25.01 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=32.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC--CC----CCHHHHHHHHhh----CCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY--TT----NSPEACLHCLVT----SDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~--~~----~~~~~~~~~l~~----~~~~~v~~~~ 105 (305)
+++||.|++..+...... .++...|+.++.++ .. .+.+++...+++ -++++|+...
T Consensus 90 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSY---VAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHH---HHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHH---HHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 457777776655444333 22556677666655 22 367777777764 3566666543
No 106
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=48.41 E-value=15 Score=29.54 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCCCCeEEEEecCC
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~n~ 60 (305)
.+.+.|+++|+++||.|.+...=+
T Consensus 19 ~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 19 TITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 455567888999999999987643
No 107
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=47.27 E-value=67 Score=26.70 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++++||.|++..+..... .-++...|+.++.++. ....+++...++. ++++|+..
T Consensus 75 ~~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVST---LNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp TCCTTCEEEEESSSCHHH---HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred CCCCCCEEEeCCCccHhH---HHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 456777766655443332 2334455665554432 1456666666653 55666554
No 108
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=46.89 E-value=95 Score=25.62 Aligned_cols=77 Identities=10% Similarity=-0.016 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCce
Q psy2835 24 EWFYSDLGAIYAGG---LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 24 ~~Ty~el~~~~~~~---la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.+... +... ..+.+...++++|++|+|+..-..-.+.+.+| ...|+ .++.++.+ ++-..+++..+++
T Consensus 139 ~~~~~~aa~-~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~---~~~~~~~~~lGa~ 213 (352)
T 3fpc_A 139 EIPLEAAVM-IPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSR---KHCCDIALEYGAT 213 (352)
T ss_dssp TSCHHHHTT-TTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCC---HHHHHHHHHHTCC
T ss_pred CCCHHHHhh-ccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCC---HHHHHHHHHhCCc
Confidence 466666542 1111 11335667899999999998644455555554 45687 56666543 3444567778888
Q ss_pred EEEEeC
Q psy2835 100 ICVVED 105 (305)
Q Consensus 100 ~v~~~~ 105 (305)
.++...
T Consensus 214 ~vi~~~ 219 (352)
T 3fpc_A 214 DIINYK 219 (352)
T ss_dssp EEECGG
T ss_pred eEEcCC
Confidence 877643
No 109
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=46.45 E-value=55 Score=26.71 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEe-cCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 24 EWFYSDLGAIYAGG---LAKAFLKLGLERYHSVCIIG-FNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 24 ~~Ty~el~~~~~~~---la~~L~~~g~~~gd~V~i~~-~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.+... +... .-+.|...++++|++|+|.. .-..-...+.+| ...|+.++.+. +.++ ..++++.+++
T Consensus 125 ~~~~~~aa~-l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 125 KLSFLQAAS-LPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TSCHHHHHH-SHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCHHHHhh-hhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 567776654 2222 11334567899999999997 445555555555 45688766554 3444 5667778888
Q ss_pred EEEEeCh
Q psy2835 100 ICVVEDD 106 (305)
Q Consensus 100 ~v~~~~~ 106 (305)
.++...+
T Consensus 199 ~~i~~~~ 205 (321)
T 3tqh_A 199 QCINYHE 205 (321)
T ss_dssp EEEETTT
T ss_pred EEEeCCC
Confidence 7765443
No 110
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=46.33 E-value=17 Score=29.39 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=17.7
Q ss_pred HHHHHHHcCCCCCCeEEEEecC
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFN 59 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n 59 (305)
+.+.|+++|+++||.|.+.+.=
T Consensus 18 L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHcCCCCCCEEEEEech
Confidence 4556778899999999998754
No 111
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=46.20 E-value=1.3e+02 Score=25.04 Aligned_cols=55 Identities=11% Similarity=-0.046 Sum_probs=34.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC---CceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS---DANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~---~~~~v~~~~ 105 (305)
.++||.|++..+....+ .-++...|+.+++++. .+.+++...++.. ++++|++..
T Consensus 124 ~~~gd~V~~~~p~~~~~---~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASI---IDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHH---HHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHH---HHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 45777776665544433 3345566777777764 5677777777764 567777654
No 112
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=45.85 E-value=1.2e+02 Score=25.48 Aligned_cols=55 Identities=4% Similarity=-0.079 Sum_probs=32.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhhC---Cce-EEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVTS---DAN-ICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~~---~~~-~v~~~ 104 (305)
+++||.|++..+....+. -++...|+.++.++. ....+++...++.. +.+ ++++.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 185 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLIN 185 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEe
Confidence 457888887766544433 334456766666553 44677888877653 445 45443
No 113
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=45.77 E-value=1.3e+02 Score=25.32 Aligned_cols=46 Identities=11% Similarity=-0.088 Sum_probs=27.5
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhh
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVT 95 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~ 95 (305)
+++||.|++..+....+. -++...|+.++.++. ..+.+++...++.
T Consensus 123 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 173 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYR---VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNE 173 (418)
T ss_dssp SCTTCEEEEESSCCTHHH---HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCchhHH---HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 456787777665544333 344566766665543 3467777777765
No 114
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=45.64 E-value=17 Score=29.43 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=22.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCC
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~ 60 (305)
++.+|-++|.+ .|+++|+++||.|.+.+.=+
T Consensus 19 ~~~~T~~~L~~--------~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 19 RELVTRDRLAS--------DLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CCEECHHHHHH--------HHHHHTCCTTCEEEEEECST
T ss_pred CCCcCHHHHHH--------HHHHcCCCCCCEEEEEechH
Confidence 44566555554 56778999999999986543
No 115
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=44.61 E-value=1.2e+02 Score=24.23 Aligned_cols=72 Identities=7% Similarity=-0.054 Sum_probs=48.2
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+++...+.-|+..++.+.| ...|..++.++ +...+..|.+.|.. ..++.-|+...+..----......
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~-~~~~~~~L~~~g~~----~IVIACNTa~~~al~~lr~~~~iP 93 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKF-TWEMTNFLVDRGIK----MLVIACNTATAAALYDIREKLDIP 93 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHH-HHHHHHHHHHTTCS----EEEECCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCC----EEEEeCCCccHHHHHHHHHhcCCC
Confidence 46778888899976665433 46889999995 99999999988753 666666776653222112233555
Q ss_pred EEe
Q psy2835 77 AAG 79 (305)
Q Consensus 77 ~v~ 79 (305)
++-
T Consensus 94 vig 96 (269)
T 3ist_A 94 VIG 96 (269)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 116
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=43.95 E-value=94 Score=25.65 Aligned_cols=9 Identities=11% Similarity=0.124 Sum_probs=4.8
Q ss_pred ceEechhHH
Q psy2835 182 PVMLSHDNI 190 (305)
Q Consensus 182 ~v~~s~~~l 190 (305)
|.++..+.+
T Consensus 229 G~~~~~~~~ 237 (390)
T 1elu_A 229 GGLYIHGDC 237 (390)
T ss_dssp EEEEECTTT
T ss_pred EEEEECHHh
Confidence 555555544
No 117
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=43.82 E-value=1.2e+02 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=14.4
Q ss_pred CCCcceEechhHHHHHHHHHHH
Q psy2835 178 GASKPVMLSHDNITFNAACIIQ 199 (305)
Q Consensus 178 G~pK~v~~s~~~l~~~~~~~~~ 199 (305)
|.+-|.++..+.+...+.....
T Consensus 228 G~r~G~~~~~~~~~~~~~~~~~ 249 (370)
T 2z61_A 228 GWRIGYVISNDEIIEAILKLQQ 249 (370)
T ss_dssp GGCCEEEECCHHHHHHHHHHHH
T ss_pred cceEEEEEECHHHHHHHHHHHh
Confidence 4445888888887776655433
No 118
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=43.75 E-value=1.3e+02 Score=24.54 Aligned_cols=79 Identities=14% Similarity=-0.043 Sum_probs=47.6
Q ss_pred ccchHHHHHH-HHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAI-YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~-~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.+++.+..-- ........+...++++|++|+|...-..-.+.+.+|- ..|+ +++.++.+ ++-..+++..+++.+
T Consensus 134 ~l~~~~aa~l~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak-~~G~~~vi~~~~~---~~k~~~a~~lGa~~~ 209 (346)
T 4a2c_A 134 DMPIEDGAFIEPITVGLHAFHLAQGCENKNVIIIGAGTIGLLAIQCAV-ALGAKSVTAIDIS---SEKLALAKSFGAMQT 209 (346)
T ss_dssp TSCGGGGGGHHHHHHHHHHHHHTTCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC---HHHHHHHHHTTCSEE
T ss_pred CCCHHHHHhchHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHH-HcCCcEEEEEech---HHHHHHHHHcCCeEE
Confidence 4666554320 1222233445678899999999987555555555554 4454 44445443 344566788899988
Q ss_pred EEeCh
Q psy2835 102 VVEDD 106 (305)
Q Consensus 102 ~~~~~ 106 (305)
+...+
T Consensus 210 i~~~~ 214 (346)
T 4a2c_A 210 FNSSE 214 (346)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 87654
No 119
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=43.68 E-value=99 Score=25.43 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=47.1
Q ss_pred CccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 23 PEWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
..+++.+... +...++. .+ ...++++|++|+|....+.-=..+...+...|+.++.+..+... + ..++..++
T Consensus 130 ~~~~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~--~-~~~~~~ga 205 (342)
T 4eye_A 130 PQLDDAEAVA-LIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA--T-EFVKSVGA 205 (342)
T ss_dssp TTSCHHHHHH-HTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG--H-HHHHHHTC
T ss_pred CCCCHHHHHH-hhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH--H-HHHHhcCC
Confidence 3577777654 3333332 23 34578999999999885544344444445678877776654322 2 34555678
Q ss_pred eEEEEeC
Q psy2835 99 NICVVED 105 (305)
Q Consensus 99 ~~v~~~~ 105 (305)
+.++...
T Consensus 206 ~~v~~~~ 212 (342)
T 4eye_A 206 DIVLPLE 212 (342)
T ss_dssp SEEEESS
T ss_pred cEEecCc
Confidence 7777554
No 120
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=43.52 E-value=1e+02 Score=25.66 Aligned_cols=13 Identities=0% Similarity=-0.044 Sum_probs=7.4
Q ss_pred ceEechhHHHHHH
Q psy2835 182 PVMLSHDNITFNA 194 (305)
Q Consensus 182 ~v~~s~~~l~~~~ 194 (305)
|+.+..+.+...+
T Consensus 207 g~~~~~~~~~~~~ 219 (416)
T 3isl_A 207 APITYNERVADVI 219 (416)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHh
Confidence 5566666665444
No 121
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=43.51 E-value=1.3e+02 Score=24.49 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=44.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEeCh-------HHHHHHHHH
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVEDD-------KQLEKILKV 115 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~~~-------~~~~~~~~~ 115 (305)
+++||.|++..+.... ...++...|+.++.++.. .+.+++...++. ++++|+.... ...+.+.++
T Consensus 105 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQ---YRQNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp CSTTCEEEEEESSCHH---HHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ccCCCEEEEcCCChHH---HHHHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 4578888777765443 333444556655555332 367777777754 5677665422 124556666
Q ss_pred hccCCCccEEEEccCC
Q psy2835 116 KAQCPKLKAIVQYEGK 131 (305)
Q Consensus 116 ~~~~~~~~~~i~~~~~ 131 (305)
.+.+.. ...+++|+.
T Consensus 181 ~~~~~~-~~~li~De~ 195 (363)
T 3ffh_A 181 LDRVPS-DVLVVLDEA 195 (363)
T ss_dssp HTTSCT-TSEEEEECT
T ss_pred HHhCCC-CcEEEEeCc
Confidence 665554 445545543
No 122
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=43.38 E-value=55 Score=27.74 Aligned_cols=54 Identities=9% Similarity=-0.132 Sum_probs=31.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-------CCHHHHHHHHhhCCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-------NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++||.|++..+.... ...++...|..++.++.. .+.++++..+++.++++|+..
T Consensus 141 ~~gd~Vi~~~~~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~ 201 (421)
T 3l8a_A 141 EKGDAVLINSPVYYP---FARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC 201 (421)
T ss_dssp CTEEEEEEEESCCHH---HHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred CCCCEEEECCCCcHH---HHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEEC
Confidence 466777666554333 233444566655544432 467788888876667777654
No 123
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=43.01 E-value=89 Score=25.74 Aligned_cols=74 Identities=5% Similarity=-0.039 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGG---LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~---la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 100 (305)
.+++.+... +... .-+.|.+.++++|++|+|......-..++.+|- ..|+.++.++.+-... ..++..+++.
T Consensus 149 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~~---~~~~~lGa~~ 223 (348)
T 3two_A 149 NAPLEKVAP-LLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHKK---QDALSMGVKH 223 (348)
T ss_dssp TSCHHHHGG-GGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTTH---HHHHHTTCSE
T ss_pred CCCHHHhhh-hhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHH---HHHHhcCCCe
Confidence 467766542 1111 123455668999999999987545555555554 5688777766554333 2456678888
Q ss_pred EE
Q psy2835 101 CV 102 (305)
Q Consensus 101 v~ 102 (305)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 88
No 124
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=42.80 E-value=1e+02 Score=25.45 Aligned_cols=58 Identities=10% Similarity=-0.080 Sum_probs=30.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEec--CCC--CCHHHHHHHHhh-CCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM--YTT--NSPEACLHCLVT-SDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i--~~~--~~~~~~~~~l~~-~~~~~v~~~~ 105 (305)
+++||.|++..+...... ..-.+...|+.++.+ ++. .+.+++...+++ .++++|+...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 456777766655433321 111122345554444 332 467778777754 3566666543
No 125
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=42.63 E-value=83 Score=26.31 Aligned_cols=60 Identities=15% Similarity=0.019 Sum_probs=39.8
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.+...++++|++|+|......-.+.+.+|- ..|+ .++.++.+ ++-..+++..+++.++-.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ---ATKRRLAEEVGATATVDP 234 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC---HHHHHHHHHHTCSEEECT
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC---HHHHHHHHHcCCCEEECC
Confidence 355678999999999987444555555544 5787 66666544 333456677788877753
No 126
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=42.50 E-value=78 Score=26.32 Aligned_cols=53 Identities=13% Similarity=-0.001 Sum_probs=39.8
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.++|...|..+..+-|...+.+....++..++++++++..
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~ 131 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS 131 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSS
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33344566777778888888987766655555566778899999999999875
No 127
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=42.15 E-value=76 Score=26.80 Aligned_cols=55 Identities=5% Similarity=0.015 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++++||.|++..+...... .++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 78 ~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 137 (418)
T 2c81_A 78 GIGEGDEVIVPSLTWIATA---TAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPV 137 (418)
T ss_dssp TCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCB
T ss_pred CCCCcCEEEECCCccHhHH---HHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEe
Confidence 3566666665555443332 2334556555544322 245555555543 45555543
No 128
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=41.86 E-value=78 Score=26.12 Aligned_cols=54 Identities=7% Similarity=-0.075 Sum_probs=31.0
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC------CCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT------NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~------~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+++||.|++..+....+. -++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 102 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 161 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLY---DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICIN 161 (375)
T ss_dssp CCTTCEEEEEESSCTHHH---HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEE
T ss_pred cCCCCEEEEeCCCchhHH---HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEc
Confidence 467787777666554433 2344566655544422 366777776653 56666654
No 129
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=41.67 E-value=1.2e+02 Score=25.29 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHHH--HHH-HH-HHcCCC-----CCCeEEEEe-cCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHH
Q psy2835 24 EWFYSDLGAIYAGG--LAK-AF-LKLGLE-----RYHSVCIIG-FNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 93 (305)
Q Consensus 24 ~~Ty~el~~~~~~~--la~-~L-~~~g~~-----~gd~V~i~~-~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l 93 (305)
.+++.+... +-.. .|. .| ...+++ +|++|+|.. ....-.+.+.+|-...|+.++.++.+ ++-..++
T Consensus 138 ~~~~~~aa~-l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~---~~~~~~~ 213 (363)
T 4dvj_A 138 TLDWAEAAA-LPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASR---PETQEWV 213 (363)
T ss_dssp TSCHHHHHT-SHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSS---HHHHHHH
T ss_pred CCCHHHHHh-hhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCC---HHHHHHH
Confidence 567776653 2222 121 22 334677 899999998 55667777777766668877777654 3334456
Q ss_pred hhCCceEEEEeCh
Q psy2835 94 VTSDANICVVEDD 106 (305)
Q Consensus 94 ~~~~~~~v~~~~~ 106 (305)
+..+++.++...+
T Consensus 214 ~~lGad~vi~~~~ 226 (363)
T 4dvj_A 214 KSLGAHHVIDHSK 226 (363)
T ss_dssp HHTTCSEEECTTS
T ss_pred HHcCCCEEEeCCC
Confidence 7788988876544
No 130
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=41.31 E-value=62 Score=26.60 Aligned_cols=56 Identities=7% Similarity=-0.138 Sum_probs=26.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++||.|++..+..+.+......+...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEE
Confidence 456666555444444333333333445554444332 245566555543 44555543
No 131
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=41.21 E-value=1.4e+02 Score=24.09 Aligned_cols=78 Identities=12% Similarity=-0.069 Sum_probs=50.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
+-+|++-. +..+...+.+.|. ++|+.|... ..+..-..+.+++...|..++.+-|...+......++..++++++
T Consensus 37 tGSfK~R~---a~~~i~~a~~~g~~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~ 112 (303)
T 2v03_A 37 AGSVKDRA---ALSMIVEAEKRGEIKPGDVLIEA-TSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELIL 112 (303)
T ss_dssp TSBTHHHH---HHHHHHHHHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCCcHHHH---HHHHHHHHHHcCCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 34455433 2233334445553 566655444 346666677777788998777665554555666789999999999
Q ss_pred EeC
Q psy2835 103 VED 105 (305)
Q Consensus 103 ~~~ 105 (305)
++.
T Consensus 113 ~~~ 115 (303)
T 2v03_A 113 VTK 115 (303)
T ss_dssp ECT
T ss_pred ECC
Confidence 986
No 132
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=40.98 E-value=1e+02 Score=25.97 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCce
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+...++++|++|+|+.....-...+.+|-. .|+ .++.++.+ . +-...++..+++
T Consensus 177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~~--~-~~~~~a~~lGa~ 232 (398)
T 2dph_A 177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARL-LGAACVIVGDQN--P-ERLKLLSDAGFE 232 (398)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEEESC--H-HHHHHHHTTTCE
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCC--H-HHHHHHHHcCCc
Confidence 3456689999999999874445566666554 577 56655543 2 333456777886
No 133
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=40.72 E-value=1.1e+02 Score=25.62 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=7.1
Q ss_pred CCCCCeEEEEecCCh
Q psy2835 47 LERYHSVCIIGFNAP 61 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~ 61 (305)
+++||.|++..+...
T Consensus 115 ~~~gd~Vl~~~~~~~ 129 (420)
T 1t3i_A 115 LKAGDEIITTVMEHH 129 (420)
T ss_dssp CCTTCEEEEETTCCG
T ss_pred cCCCCEEEECcchhH
Confidence 345555555444333
No 134
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=39.99 E-value=1.1e+02 Score=25.35 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=12.8
Q ss_pred CCCcceEechhHHHHHHHHH
Q psy2835 178 GASKPVMLSHDNITFNAACI 197 (305)
Q Consensus 178 G~pK~v~~s~~~l~~~~~~~ 197 (305)
|..=|.++..+.+...+...
T Consensus 240 G~RiG~~~~~~~~~~~l~~~ 259 (385)
T 1b5p_A 240 GWRIGYACGPKEVIKAMASV 259 (385)
T ss_dssp GGCCEEEECCHHHHHHHHHH
T ss_pred ccceEEEEeCHHHHHHHHHH
Confidence 44456788877777665543
No 135
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=39.80 E-value=1.7e+02 Score=24.77 Aligned_cols=89 Identities=9% Similarity=-0.026 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHH------HHcCCeEEecCCCCCHHHHHHHHhhCCc---
Q psy2835 28 SDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGA------IYAGGFAAGMYTTNSPEACLHCLVTSDA--- 98 (305)
Q Consensus 28 ~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~------~~~G~~~v~i~~~~~~~~~~~~l~~~~~--- 98 (305)
++++.. +..+...|++.|+ .++|+..|..+.+...+.- -..+...+.....-.++.+.+++++.+.
T Consensus 255 g~~ypg-v~e~L~~Lk~~Gi----~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KPKp~~l~~al~~Lgl~pe 329 (387)
T 3nvb_A 255 GKAFTE-FQEWVKKLKNRGI----IIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFD 329 (387)
T ss_dssp HHHHHH-HHHHHHHHHHTTC----EEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSCHHHHHHHHHHHHTCCGG
T ss_pred cccCHH-HHHHHHHHHHCCC----EEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCCcHHHHHHHHHHhCcCcc
Confidence 356664 7777788888877 5999999998877777653 2245555555656567778888876653
Q ss_pred eEEEEeChHHHHHHHHHhccCCCcc
Q psy2835 99 NICVVEDDKQLEKILKVKAQCPKLK 123 (305)
Q Consensus 99 ~~v~~~~~~~~~~~~~~~~~~~~~~ 123 (305)
.++++++. ...+......++.+.
T Consensus 330 e~v~VGDs--~~Di~aaraalpgV~ 352 (387)
T 3nvb_A 330 SMVFLDDN--PFERNMVREHVPGVT 352 (387)
T ss_dssp GEEEECSC--HHHHHHHHHHSTTCB
T ss_pred cEEEECCC--HHHHHHHHhcCCCeE
Confidence 45666554 233344444444443
No 136
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=39.73 E-value=1.5e+02 Score=25.25 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHcCCeEEecCCCCCHH--HHHHHHhhCCceEEEEeCh
Q psy2835 70 AIYAGGFAAGMYTTNSPE--ACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 70 ~~~~G~~~v~i~~~~~~~--~~~~~l~~~~~~~v~~~~~ 106 (305)
+..-|-.++..++.+... .+...+...+.+++.++..
T Consensus 116 l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 154 (414)
T 3ndn_A 116 LLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD 154 (414)
T ss_dssp TCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred HhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC
Confidence 334455555555555432 1333345566666666543
No 137
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=39.72 E-value=62 Score=26.71 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.4
Q ss_pred CCceEEEE
Q psy2835 96 SDANICVV 103 (305)
Q Consensus 96 ~~~~~v~~ 103 (305)
.+.+++.+
T Consensus 111 ~g~~~~~v 118 (382)
T 4eb5_A 111 QGFEVEYI 118 (382)
T ss_dssp TTCEEEEE
T ss_pred CCcEEEEe
Confidence 34444443
No 138
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=39.69 E-value=1.4e+02 Score=24.64 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=9.2
Q ss_pred CCHHHHHHHHhhCCceEEEE
Q psy2835 84 NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 84 ~~~~~~~~~l~~~~~~~v~~ 103 (305)
.+.+++...++..++++|+.
T Consensus 130 ~d~~~l~~~l~~~~~~~v~~ 149 (396)
T 2ch1_A 130 FSLETLARAIELHQPKCLFL 149 (396)
T ss_dssp CCHHHHHHHHHHHCCSEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEE
Confidence 34555555554323444444
No 139
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=39.40 E-value=1.5e+02 Score=23.98 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=48.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhh-CCceEEEEeCh-------HHHHHHHH
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVT-SDANICVVEDD-------KQLEKILK 114 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~-~~~~~v~~~~~-------~~~~~~~~ 114 (305)
.++||.|++..+....+ .-++...|+.++.++.. .+.+++...+++ .++++|++... ...+.+.+
T Consensus 89 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 165 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDG---EHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEP 165 (354)
T ss_dssp CCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHH
T ss_pred hCCCCeEEECCCCchHH---HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 36788888776655443 34455677776666433 467888888875 57888776332 12345666
Q ss_pred HhccCCCccEEEEccCC
Q psy2835 115 VKAQCPKLKAIVQYEGK 131 (305)
Q Consensus 115 ~~~~~~~~~~~i~~~~~ 131 (305)
+.+.+ .....+++|+.
T Consensus 166 l~~~~-~~~~~li~De~ 181 (354)
T 3ly1_A 166 WIASK-PANTMFIVDEA 181 (354)
T ss_dssp HHHTC-CTTEEEEEECT
T ss_pred HHHhC-CCCeEEEEecc
Confidence 65555 34445555543
No 140
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=39.34 E-value=1.4e+02 Score=23.67 Aligned_cols=79 Identities=15% Similarity=-0.061 Sum_probs=50.2
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC---CeEEecCCCC-CHH---HHHHHHhhCC
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG---GFAAGMYTTN-SPE---ACLHCLVTSD 97 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G---~~~v~i~~~~-~~~---~~~~~l~~~~ 97 (305)
+.+.++.++.+..+..++...| ++.|++...-+.++.++..-+...+ ...+.++... +.+ ....+.+..+
T Consensus 3 ~~~~~~~~~l~~~l~~~v~~~~---~~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~~a~~lg 79 (268)
T 1xng_A 3 KDYQKLIVYLCDFLEKEVQKRG---FKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFS 79 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT---CCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHhC---CCCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 3455555544555555665554 4468888999999988877776654 4455566443 333 3455667778
Q ss_pred ceEEEEeCh
Q psy2835 98 ANICVVEDD 106 (305)
Q Consensus 98 ~~~v~~~~~ 106 (305)
.+..+.+-.
T Consensus 80 i~~~~i~i~ 88 (268)
T 1xng_A 80 IPYTEYSIA 88 (268)
T ss_dssp CCEEECCCH
T ss_pred CCEEEEeCh
Confidence 888777644
No 141
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=39.33 E-value=74 Score=26.75 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=30.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC------CCCHHHHHHHHhhC--CceEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT------TNSPEACLHCLVTS--DANICV 102 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~------~~~~~~~~~~l~~~--~~~~v~ 102 (305)
.++||.|++..|....+ .-++...|+.++.++. ..+.+++...+++. +..+++
T Consensus 128 ~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~ 188 (409)
T 4eu1_A 128 VANCNRIYGPDVGYPNH---ESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILV 188 (409)
T ss_dssp SSSCCEEEEESSCCTHH---HHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred cCCCCEEEEeCCCcHhH---HHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEE
Confidence 46678877776654443 2334456766666553 23567777777642 334444
No 142
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=39.29 E-value=1.5e+02 Score=24.34 Aligned_cols=54 Identities=7% Similarity=-0.193 Sum_probs=29.6
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-------CCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-------NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-------~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.++||.|++..+.... ..-++...|+.++.++.. .+.+++...+ ..++++|+..
T Consensus 103 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~ 163 (383)
T 3kax_A 103 TKENESVLVQPPIYPP---FFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLC 163 (383)
T ss_dssp CCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEE
T ss_pred CCCCCEEEEcCCCcHH---HHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEe
Confidence 3567766655444333 223445567666665542 4667777766 4455665543
No 143
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=39.19 E-value=1.6e+02 Score=24.24 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=15.1
Q ss_pred CCCCCcceEechhHHHHHHHHHH
Q psy2835 176 TEGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 176 tTG~pK~v~~s~~~l~~~~~~~~ 198 (305)
..|.+-|.++..+.+...+....
T Consensus 240 ~~G~r~G~~~~~~~~~~~l~~~~ 262 (386)
T 1u08_A 240 MTGWKVGYCVAPAPISAEIRKVH 262 (386)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHH
T ss_pred CcccceEEEEcCHHHHHHHHHHH
Confidence 34556688888887776665543
No 144
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=39.19 E-value=1.4e+02 Score=23.46 Aligned_cols=80 Identities=11% Similarity=-0.061 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc-CC--eEEecCCCC----CHHHHHHHHhhC
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GG--FAAGMYTTN----SPEACLHCLVTS 96 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~-G~--~~v~i~~~~----~~~~~~~~l~~~ 96 (305)
.+.|+++.+..+..+..++++.|. ++|++.+.-+.++.++..-+... |. ..+.++... +.+....+.+..
T Consensus 3 ~~~~~~~~~~l~~~l~d~v~~~g~---~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~~~~~~~~a~~~a~~l 79 (249)
T 3p52_A 3 AMDWQKITEKMCDFIQEKVKNSQS---QGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALRLCADL 79 (249)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSC---SEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhCC---CCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 356777777667777777777773 47999999999998888777665 64 444555433 233456677778
Q ss_pred CceEEEEeCh
Q psy2835 97 DANICVVEDD 106 (305)
Q Consensus 97 ~~~~v~~~~~ 106 (305)
+.+..+.+-.
T Consensus 80 gi~~~~v~i~ 89 (249)
T 3p52_A 80 NLEYKIIEIQ 89 (249)
T ss_dssp TCEEEECCCH
T ss_pred CCCEEEEECc
Confidence 8888777654
No 145
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=39.12 E-value=61 Score=27.25 Aligned_cols=55 Identities=22% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.++||.|.+-.+... ...-++...|+.+++++. ...++++..++..++++|+++.
T Consensus 140 ~~~gd~Vl~~~~~~~---~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFAHM---SLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTSCH---HHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCcCH---HHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 467887776544433 334456667888877654 5678888888776667777764
No 146
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=38.90 E-value=1.5e+02 Score=24.34 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=28.7
Q ss_pred CCC-CeEEEEecCChhHHHHHHHHHHcCCeEEecCC----CCCHHHHHHHHhhCCceEEEEe
Q psy2835 48 ERY-HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT----TNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 48 ~~g-d~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++| |.|++..+.-..+. .++...|+.++.++. ..+.+++...++ ++++|+..
T Consensus 97 ~~g~d~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--~~~~v~l~ 153 (356)
T 1fg7_A 97 EPGKDAILYCPPTYGMYS---VSAETIGVECRTVPTLDNWQLDLQGISDKLD--GVKVVYVC 153 (356)
T ss_dssp CTTTCEEEECSSSCTHHH---HHHHHHTCEEEECCCCTTSCCCHHHHHTSCT--TEEEEEEE
T ss_pred CCCCCEEEEeCCChHHHH---HHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc--CCCEEEEe
Confidence 467 77766655433322 333455766665543 234566666555 66666654
No 147
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=38.81 E-value=41 Score=21.85 Aligned_cols=52 Identities=10% Similarity=-0.073 Sum_probs=25.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCh--hHH-HHHHHHHHcCCeEEec
Q psy2835 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP--EWF-YSDLGAIYAGGFAAGM 80 (305)
Q Consensus 22 ~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--~~~-~~~~a~~~~G~~~v~i 80 (305)
++.++..+|..+ ...+. .-.+...|.|..+... ..+ -++=+|-.+|..-+.+
T Consensus 36 ~~~v~~~~L~~~-l~~~~------~~~~~~~V~I~aD~~~~y~~vv~vmd~l~~aG~~~v~l 90 (99)
T 2pfu_A 36 NDPVTDETMITA-LNALT------EGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGL 90 (99)
T ss_dssp TEEECSSSHHHH-HHHHS------SSCCSSCEEEEECTTCCHHHHHHHHHHHHHTCCCCEEC
T ss_pred CEecCHHHHHHH-HHHHH------hcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 345666666663 33221 2233445777666543 333 3344444567644433
No 148
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=38.66 E-value=1.7e+02 Score=24.21 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=29.3
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC--C-----CCHHHHHHHHhhCCceEEEE
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT--T-----NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~--~-----~~~~~~~~~l~~~~~~~v~~ 103 (305)
++||.|++..+....+. .++...|+.++.++. . ...+++...++..++++|+.
T Consensus 109 ~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp CTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 46777766655443322 333455665544432 1 46677777776556666664
No 149
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=38.57 E-value=1.3e+02 Score=24.74 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGGLA---KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la---~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 100 (305)
.+++.+..- ..-++ +.+...++++|++|+|......-..++.+|- ..|+.++.++.+ . +-...++..+++.
T Consensus 142 ~~~~~~aa~--~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~-~~~~~~~~lGa~~ 215 (352)
T 1e3j_A 142 NVSLEEGAL--LEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTARS--P-RRLEVAKNCGADV 215 (352)
T ss_dssp TSCHHHHHT--HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESC--H-HHHHHHHHTTCSE
T ss_pred CCCHHHHHh--hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEcCC--H-HHHHHHHHhCCCE
Confidence 467766542 12222 2345568999999999987444555555554 468765555433 3 3334566778887
Q ss_pred EEEe
Q psy2835 101 CVVE 104 (305)
Q Consensus 101 v~~~ 104 (305)
++..
T Consensus 216 ~~~~ 219 (352)
T 1e3j_A 216 TLVV 219 (352)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 6653
No 150
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=38.46 E-value=1.6e+02 Score=24.68 Aligned_cols=56 Identities=13% Similarity=0.008 Sum_probs=35.9
Q ss_pred HHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 42 FLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
+...++++|++|+|...-..-.+.+.+|- ..|+ .++.++.+ ++-..+++..+++.+
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk-~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~i 234 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDLN---PARLAHAKAQGFEIA 234 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESC---HHHHHHHHHTTCEEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCCeEEEEcCC---HHHHHHHHHcCCcEE
Confidence 44568999999999986444555555554 4677 45555443 333455677888743
No 151
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=38.41 E-value=1.3e+02 Score=24.57 Aligned_cols=58 Identities=5% Similarity=-0.102 Sum_probs=30.1
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+++||.|++..+.... ....-.+...|+.++.++.. .+.+++...++..++++|+...
T Consensus 74 ~~~gd~vi~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFG-DRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSSHHH-HHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCCcch-HHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 4567766655442211 11112223456655554432 3667777777765666666653
No 152
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=38.37 E-value=1.6e+02 Score=24.14 Aligned_cols=53 Identities=8% Similarity=-0.140 Sum_probs=25.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC----CCCHHHHHHHHhhCCceEEEE
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT----TNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~v~~ 103 (305)
++||.|++..+....+. .++...|+.++.++. ..+.+++...++..++++|++
T Consensus 114 ~~gd~Vl~~~~~y~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 114 GPGRTALGFQPSYSMHP---ILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp STTCEEEEEESSCTHHH---HHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEE
Confidence 35666665555443322 233445554444432 234566666655434555555
No 153
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=38.15 E-value=1.5e+02 Score=24.89 Aligned_cols=11 Identities=0% Similarity=0.093 Sum_probs=7.4
Q ss_pred ceEechhHHHH
Q psy2835 182 PVMLSHDNITF 192 (305)
Q Consensus 182 ~v~~s~~~l~~ 192 (305)
|.++..+.++.
T Consensus 220 G~~~~~~~~~~ 230 (404)
T 1e5e_A 220 GLICGKADLLQ 230 (404)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEECHHHHH
Confidence 77777776654
No 154
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=38.06 E-value=71 Score=19.80 Aligned_cols=45 Identities=4% Similarity=-0.214 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+.+.++.++ . .+.+..+++.|.++|.++.....+...+...|..
T Consensus 23 ~ip~~~l~~~-~-------~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 23 NIPLKEVKER-I-------ATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp ECCHHHHHHH-H-------HHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EcCHHHHHHH-H-------HHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4566666552 3 3346677888999999888777777777777763
No 155
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=37.95 E-value=98 Score=25.80 Aligned_cols=8 Identities=0% Similarity=0.364 Sum_probs=4.0
Q ss_pred eEechhHH
Q psy2835 183 VMLSHDNI 190 (305)
Q Consensus 183 v~~s~~~l 190 (305)
+++..+.+
T Consensus 236 ~~~~~~~~ 243 (406)
T 3cai_A 236 MVFRDPSV 243 (406)
T ss_dssp EEESCHHH
T ss_pred EEEEehHH
Confidence 55555543
No 156
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=37.95 E-value=48 Score=28.59 Aligned_cols=58 Identities=9% Similarity=-0.192 Sum_probs=33.1
Q ss_pred CCCCCeEEEEe-cCChhHHHHH-------HHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIG-FNAPEWFYSD-------LGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~-~n~~~~~~~~-------~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+++||.|++.. +....+.-.. -.+...|+.++.++.. .+.+++...++. ++++|+++.
T Consensus 104 ~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~ 173 (431)
T 3ht4_A 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQR 173 (431)
T ss_dssp CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEEC
Confidence 56788776654 3332221111 1122357777766653 567778777764 677887764
No 157
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=37.63 E-value=1.6e+02 Score=23.73 Aligned_cols=77 Identities=10% Similarity=-0.125 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGL-ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~ 102 (305)
.-+|++-.. ..+...+.+.|. +++ .+....+..-..+.+++...|..+..+-|...+......++..++++++
T Consensus 43 tGSfK~R~a---~~~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~ 116 (303)
T 1o58_A 43 GGSVKDRPA---LFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL 116 (303)
T ss_dssp TSBTTHHHH---HHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred CCChHHHHH---HHHHHHHHHcCCCCCC---EEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEE
Confidence 344554432 233334445554 344 2344556666677777778888666554444445666788999999999
Q ss_pred EeCh
Q psy2835 103 VEDD 106 (305)
Q Consensus 103 ~~~~ 106 (305)
++..
T Consensus 117 ~~~~ 120 (303)
T 1o58_A 117 TPGE 120 (303)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 9864
No 158
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=37.50 E-value=65 Score=26.66 Aligned_cols=59 Identities=8% Similarity=-0.011 Sum_probs=31.7
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEeC
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
...++++||.|.+..+..... ..++...|+.++.++.. .+.+++...++. ++++|+...
T Consensus 69 ~~l~~~~gd~Vi~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n 132 (373)
T 3frk_A 69 KGYDIGFGDEVIVPSNTFIAT---ALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH 132 (373)
T ss_dssp HHTTCCTTCEEEEETTSCTHH---HHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC
T ss_pred HHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC
Confidence 334567777776665544442 23345556665554432 155666665544 566666543
No 159
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=37.23 E-value=1e+02 Score=24.71 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=41.8
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHH
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWF 64 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~ 64 (305)
.+++...+.-|+..++...+ ..-+|.++.++ +.+.+..|.+.|++ ..++.-|+...+
T Consensus 38 tv~~~i~~~lP~e~~iy~~D~a~~PYG~ks~e~i~~~-~~~~~~~L~~~g~d----~IVIACNTa~~~ 100 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKF-CLEALDFFEQFQID----MLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHH-HHHHHHHHTTSCCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCC----EEEEeCCChhHH
Confidence 45677778888877765544 47899999995 99999988877653 666777776543
No 160
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=37.13 E-value=1.2e+02 Score=25.04 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=27.4
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-----CCCHHHHHHHHhhCCceEEE
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-----TNSPEACLHCLVTSDANICV 102 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-----~~~~~~~~~~l~~~~~~~v~ 102 (305)
++++||.|++..+...... -++...|+.++.++. ..+.+++...++. +.++|+
T Consensus 74 ~~~~gd~Vi~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 74 GVGPGTEVIVPAFTFISSS---QAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp TCCTTCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred CCCCcCEEEECCCccHHHH---HHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 4566776666555444332 234455655544432 2356666665542 455555
No 161
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=37.04 E-value=1.2e+02 Score=24.98 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=8.4
Q ss_pred cceEechhHHHHHH
Q psy2835 181 KPVMLSHDNITFNA 194 (305)
Q Consensus 181 K~v~~s~~~l~~~~ 194 (305)
-|+++..+.+...+
T Consensus 218 ~g~~~~~~~~~~~~ 231 (393)
T 3kgw_A 218 ISLISFNDKAKYKV 231 (393)
T ss_dssp CEEEEECHHHHHHH
T ss_pred eeEEEECHHHHHHH
Confidence 46676666665444
No 162
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=36.97 E-value=84 Score=27.18 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=38.0
Q ss_pred cCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 45 LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
.++++|++|+|....+.-=..+...+...|+.++.+.. +.+. ...++..+++.++..
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~--~~~~-~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS--SPQK-AEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC--CHHH-HHHHHhhCCcEEEec
Confidence 47899999999988554444444444567887776653 3444 445677888887754
No 163
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=36.75 E-value=1.3e+02 Score=22.60 Aligned_cols=54 Identities=6% Similarity=-0.061 Sum_probs=40.6
Q ss_pred eEEEEecC-C---hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 52 SVCIIGFN-A---PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 52 ~V~i~~~n-~---~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+|.+.+.. . .-..++...+-..|.-+.-+....+.+++...++..+|++|..+.
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 56555433 2 233344444457899999999999999999999999999999875
No 164
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=36.62 E-value=1.7e+02 Score=23.61 Aligned_cols=80 Identities=14% Similarity=-0.061 Sum_probs=50.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHcC-CCCCCe-EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLG-LERYHS-VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g-~~~gd~-V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
.-+|++-. +..+...+.+.| +++|+. ..+....+..-..+.+++...|..+..+-|...+..-...++..+++++
T Consensus 36 tGSfK~R~---a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~ 112 (304)
T 1ve1_A 36 GGSIKDRP---AWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELV 112 (304)
T ss_dssp TSBTTHHH---HHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEE
T ss_pred CCcHHHHH---HHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Confidence 34455433 223333445555 456652 3333556666677777788899877665554444566678899999999
Q ss_pred EEeCh
Q psy2835 102 VVEDD 106 (305)
Q Consensus 102 ~~~~~ 106 (305)
+++..
T Consensus 113 ~~~~~ 117 (304)
T 1ve1_A 113 LTDPE 117 (304)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 99865
No 165
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=36.57 E-value=70 Score=22.66 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=13.8
Q ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 69 GAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 69 a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.|...|...+.+.+....+++....+..+.+
T Consensus 89 ~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 89 EAIAIGAKTLWLQLGVINEQAAVLAREAGLS 119 (145)
T ss_dssp HHHHHTCCEEECCTTCCCHHHHHHHHTTTCE
T ss_pred HHHHcCCCEEEEcCChHHHHHHHHHHHcCCE
Confidence 3444444444444444444444444444443
No 166
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=36.54 E-value=60 Score=27.21 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHH---HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 25 WFYSDLGAIYAGG---LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 25 ~Ty~el~~~~~~~---la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
+++.+... +... .-..|.+.++++|++|+|......-...+.+|- ..|+.++.++.+. +.+ ..++..+++.+
T Consensus 168 ls~~~aa~-l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~~~--~~~-~~a~~lGa~~v 242 (369)
T 1uuf_A 168 EQLAAVAP-LLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTTSE--AKR-EAAKALGADEV 242 (369)
T ss_dssp GGHHHHGG-GGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESSG--GGH-HHHHHHTCSEE
T ss_pred CCHHHhhh-hhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCH--HHH-HHHHHcCCcEE
Confidence 77776432 1111 123455668999999999987555555555554 4687766555432 222 23445677777
Q ss_pred EEeCh
Q psy2835 102 VVEDD 106 (305)
Q Consensus 102 ~~~~~ 106 (305)
+...+
T Consensus 243 i~~~~ 247 (369)
T 1uuf_A 243 VNSRN 247 (369)
T ss_dssp EETTC
T ss_pred ecccc
Confidence 65443
No 167
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=36.47 E-value=1.9e+02 Score=24.42 Aligned_cols=56 Identities=14% Similarity=-0.003 Sum_probs=38.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
++++|++|+|......-.+++.+|- ..|+ .++.++.+ ++-..+++..+++.++...
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~---~~~~~~~~~lGa~~vi~~~ 266 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILK-HAGASKVILSEPS---EVRRNLAKELGADHVIDPT 266 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC---HHHHHHHHHHTCSEEECTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC---HHHHHHHHHcCCCEEEcCC
Confidence 6899999999987555555555554 5688 66666544 3344556777888887543
No 168
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=36.39 E-value=1.6e+02 Score=23.46 Aligned_cols=81 Identities=9% Similarity=-0.040 Sum_probs=53.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHc-------------CCeEEecCC--CCCH
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYA-------------GGFAAGMYT--TNSP 86 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~-------------G~~~v~i~~--~~~~ 86 (305)
..|++.+..++.+..+..++++.| .+ .|++-+.-+.++.++..-|..+ ..+.+.++. ..+.
T Consensus 15 ~~~~~~~~i~~~~~~L~~~l~~~g~~~---~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~ 91 (275)
T 1wxi_A 15 PQINAEEEIRRSVDFLKSYLQTYPFIK---SLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADE 91 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHSTTCC---EEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCC---CEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCH
Confidence 357777665546777878888877 43 5888888899987776544443 233444443 2356
Q ss_pred HHHHHHHhhCCc-eEEEEeCh
Q psy2835 87 EACLHCLVTSDA-NICVVEDD 106 (305)
Q Consensus 87 ~~~~~~l~~~~~-~~v~~~~~ 106 (305)
++.+.+.+..++ ...+.+-.
T Consensus 92 ~dA~~va~~lgi~~~~~i~i~ 112 (275)
T 1wxi_A 92 QDCQDAIAFIQPDRVLTVNIK 112 (275)
T ss_dssp HHHHHHHHHHCCSEEEECCCH
T ss_pred HHHHHHHHHcCCCeEEEEecH
Confidence 677778888887 77776643
No 169
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=36.00 E-value=1.3e+02 Score=24.62 Aligned_cols=60 Identities=10% Similarity=-0.126 Sum_probs=37.7
Q ss_pred CCCCCCeEEEEecCChh---HHHHHHHHH-HcCCeEEecCCC------------CCHHHHHHHHhhCCceEEEEeC
Q psy2835 46 GLERYHSVCIIGFNAPE---WFYSDLGAI-YAGGFAAGMYTT------------NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~---~~~~~~a~~-~~G~~~v~i~~~------------~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-+.- ...+++...+.+-+.++|+|..
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 88 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLR 88 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 47899999999998742 122222222 357777654321 1355677778888888888853
No 170
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=35.94 E-value=2.1e+02 Score=24.86 Aligned_cols=69 Identities=10% Similarity=-0.154 Sum_probs=49.8
Q ss_pred HHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHH----cC--CeEEecCCCCC-H------HHHHHHHhhCCceEEE
Q psy2835 37 GLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIY----AG--GFAAGMYTTNS-P------EACLHCLVTSDANICV 102 (305)
Q Consensus 37 ~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~----~G--~~~v~i~~~~~-~------~~~~~~l~~~~~~~v~ 102 (305)
++.+.+.+.+ +.++++|++...-+.++.+++..+.. .| ..++-++.... . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 3455666665 57899999999999999988887766 34 56677787775 2 2355667777877777
Q ss_pred EeC
Q psy2835 103 VED 105 (305)
Q Consensus 103 ~~~ 105 (305)
.+-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 171
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=35.94 E-value=1e+02 Score=25.39 Aligned_cols=54 Identities=7% Similarity=-0.005 Sum_probs=35.5
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHc-CCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~-G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
++ +|++|+|+.....-...+.+|-... |+.++.++.+ .+. ...++..+++.++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~--~~~-~~~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRS--KKH-RDFALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCC--HHH-HHHHHHhCCCEEec
Confidence 78 9999999998555666666665442 7776666543 333 34456677877764
No 172
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=35.94 E-value=1.1e+02 Score=25.37 Aligned_cols=57 Identities=5% Similarity=-0.107 Sum_probs=25.6
Q ss_pred CCCCCeEEEEecCChhHHHHHH-HHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDL-GAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~-a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+++||.|++..+........+. .+...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 110 ~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 171 (406)
T 1kmj_A 110 VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-KTRLLAIT 171 (406)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-TEEEEEEE
T ss_pred CCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc-CCeEEEEe
Confidence 4566666665554333222221 122345544443321 245556555543 45555554
No 173
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=35.80 E-value=1.6e+02 Score=24.36 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=6.9
Q ss_pred ceEechhHHHHHH
Q psy2835 182 PVMLSHDNITFNA 194 (305)
Q Consensus 182 ~v~~s~~~l~~~~ 194 (305)
|+++..+.+...+
T Consensus 209 g~~~~~~~~~~~~ 221 (411)
T 3nnk_A 209 SPITLSARMEEAI 221 (411)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHH
Confidence 4566555555433
No 174
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=35.68 E-value=1.4e+02 Score=25.21 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=6.5
Q ss_pred HhhCCceEEEEeC
Q psy2835 93 LVTSDANICVVED 105 (305)
Q Consensus 93 l~~~~~~~v~~~~ 105 (305)
++..+.+++.++.
T Consensus 116 ~~~~g~~~~~~~~ 128 (412)
T 2cb1_A 116 LSLMGVTVRYVDP 128 (412)
T ss_dssp TTTTTCEEEEECS
T ss_pred HHHcCCEEEEECC
Confidence 4445555555543
No 175
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=35.57 E-value=1.6e+02 Score=24.65 Aligned_cols=54 Identities=4% Similarity=-0.145 Sum_probs=21.7
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEE
Q psy2835 49 RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 49 ~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~ 103 (305)
+||.|++..+....+......+...|+.++.++.. .+.+++...++. ++++|+.
T Consensus 112 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 169 (423)
T 3lvm_A 112 KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSI 169 (423)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEEC
T ss_pred CCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEE
Confidence 45555444443333332222223334444333321 234555554443 3444444
No 176
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=35.43 E-value=1e+02 Score=25.20 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=41.6
Q ss_pred CeEEEE-ecCChhHHHHHHHHHHcCCeEEecCCCCC-HHHHHHHHhhCCceEEEEeCh
Q psy2835 51 HSVCII-GFNAPEWFYSDLGAIYAGGFAAGMYTTNS-PEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 51 d~V~i~-~~n~~~~~~~~~a~~~~G~~~v~i~~~~~-~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+.|.-. ...+..-..+.++|...|..+..+=|... +.+-...++..++++++++..
T Consensus 71 ~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~ 128 (325)
T 1j0a_A 71 DVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAK 128 (325)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCC
T ss_pred CEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcc
Confidence 345444 37778888888999999987766544444 566777899999999999864
No 177
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=35.42 E-value=1.8e+02 Score=23.75 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=4.7
Q ss_pred CHHHHHHHHhh
Q psy2835 85 SPEACLHCLVT 95 (305)
Q Consensus 85 ~~~~~~~~l~~ 95 (305)
+.+++...++.
T Consensus 159 d~~~l~~~i~~ 169 (397)
T 3f9t_A 159 DEKFVKDAVED 169 (397)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhh
Confidence 34444444443
No 178
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=35.32 E-value=63 Score=27.12 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=39.9
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.++|...|..++.+=|...+.+....++..++++++++..
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~ 148 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGEL 148 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSS
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344455566667777888888987766655556667778899999999999864
No 179
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=35.29 E-value=1.5e+02 Score=24.21 Aligned_cols=59 Identities=15% Similarity=0.032 Sum_probs=38.8
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.|.+.++++|++|+|......-..++.+|- ..|+.++.++.+ .+.+ ..++..+++.++.
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~~~d 214 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDIG--DEKL-ELAKELGADLVVN 214 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECSC--HHHH-HHHHHTTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeCC--HHHH-HHHHHCCCCEEec
Confidence 345558999999999988655666555554 568877666543 3333 3456677776654
No 180
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=34.79 E-value=1.1e+02 Score=25.38 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=37.0
Q ss_pred HcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 44 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
..++++|++|+|+..-..-..++.+|- ..|+ .++.++.+-. -..+++..+++.++..
T Consensus 186 ~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~~~---~~~~a~~lGa~~vi~~ 243 (373)
T 1p0f_A 186 TAKVTPGSTCAVFGLGGVGFSAIVGCK-AAGASRIIGVGTHKD---KFPKAIELGATECLNP 243 (373)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECSCGG---GHHHHHHTTCSEEECG
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCHH---HHHHHHHcCCcEEEec
Confidence 458999999999986555555555554 4577 5665654422 2234567788877653
No 181
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=34.29 E-value=1.9e+02 Score=23.76 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=8.2
Q ss_pred ceEechhHHHHHH
Q psy2835 182 PVMLSHDNITFNA 194 (305)
Q Consensus 182 ~v~~s~~~l~~~~ 194 (305)
|+++..+.+...+
T Consensus 230 G~l~~~~~~~~~~ 242 (393)
T 1vjo_A 230 SPFTMSSRAIEKL 242 (393)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEEECHHHHHHH
Confidence 7777777665433
No 182
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=34.23 E-value=88 Score=25.94 Aligned_cols=79 Identities=11% Similarity=-0.023 Sum_probs=46.6
Q ss_pred ccchHHHHHHHH--HHHH-HHHHHc-CCCCC-CeEEEEec-CChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhC
Q psy2835 24 EWFYSDLGAIYA--GGLA-KAFLKL-GLERY-HSVCIIGF-NAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTS 96 (305)
Q Consensus 24 ~~Ty~el~~~~~--~~la-~~L~~~-g~~~g-d~V~i~~~-n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~ 96 (305)
.+++.+... +. -..| ..|.+. ++++| ++|+|... ...-.+++.+|- ..|+.++.+..+. ..++....++..
T Consensus 138 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~l 215 (364)
T 1gu7_A 138 GLTINQGAT-ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKEL 215 (364)
T ss_dssp CCCHHHHHT-CTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHH
T ss_pred CCCHHHHhh-ccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhc
Confidence 577776543 21 1122 234443 78999 99999987 455555555555 4687665554332 223444455778
Q ss_pred CceEEEEe
Q psy2835 97 DANICVVE 104 (305)
Q Consensus 97 ~~~~v~~~ 104 (305)
+++.++..
T Consensus 216 Ga~~vi~~ 223 (364)
T 1gu7_A 216 GATQVITE 223 (364)
T ss_dssp TCSEEEEH
T ss_pred CCeEEEec
Confidence 88887754
No 183
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=34.15 E-value=73 Score=26.00 Aligned_cols=53 Identities=9% Similarity=-0.034 Sum_probs=38.2
Q ss_pred EEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 54 CIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 54 ~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+....+..-..+.++|...|..+..+-|...+......++..++++++++..
T Consensus 57 vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 109 (318)
T 2rkb_A 57 LVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKV 109 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSS
T ss_pred EEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCC
Confidence 33444466666777778888987766555545566777889999999999864
No 184
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=34.11 E-value=1.4e+02 Score=21.85 Aligned_cols=16 Identities=13% Similarity=0.005 Sum_probs=10.1
Q ss_pred HHHHHhhCCceEEEEe
Q psy2835 89 CLHCLVTSDANICVVE 104 (305)
Q Consensus 89 ~~~~l~~~~~~~v~~~ 104 (305)
+++.|+.-.+.+|++.
T Consensus 117 ~EqALrsG~~~aVl~W 132 (161)
T 1oft_A 117 SCEALRLGRSHTVVSW 132 (161)
T ss_dssp HHHHHHTTCEEEEEEC
T ss_pred HHHHHhcCCccEEEEC
Confidence 4566666666666663
No 185
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=33.94 E-value=2.1e+02 Score=24.02 Aligned_cols=52 Identities=8% Similarity=-0.237 Sum_probs=28.2
Q ss_pred CCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC---CCHHHHHHHHhhCCceEEEEe
Q psy2835 50 YHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT---NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 50 gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~---~~~~~~~~~l~~~~~~~v~~~ 104 (305)
||.|++..|.-..+. -++...|+.+++++.. ...+++...++..++++|++.
T Consensus 133 gd~V~v~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~ 187 (427)
T 3ppl_A 133 TVKWICPVPGYDRHF---SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVV 187 (427)
T ss_dssp CCEEEEEESCCHHHH---HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEEC
T ss_pred CCEEEEcCCCcHHHH---HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEC
Confidence 677766655443322 2334456555444321 356667666655567777654
No 186
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=33.80 E-value=1.9e+02 Score=23.56 Aligned_cols=56 Identities=9% Similarity=-0.132 Sum_probs=27.6
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC-C----CCHHHHHHHHhhCCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT-T----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~-~----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++||.|++..+...... ..-++...|+.++.++. . .+.+++...++..++++|+..
T Consensus 84 ~~gd~vlv~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp CSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCeEEEEcCCcchHH-HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 56776655433222111 11233455665554443 1 356677776665455565554
No 187
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=33.74 E-value=1.2e+02 Score=25.36 Aligned_cols=76 Identities=14% Similarity=0.050 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +...+.. .+ ...++++|++|+|+..-..-.+.+.+|- ..|+ .++.++.+-... ++++..++
T Consensus 165 ~~~~~~aa~-l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~-~~Ga~~Vi~~~~~~~~~---~~a~~lGa 239 (378)
T 3uko_A 165 TAPLDKVCL-LGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAK-TAGASRIIGIDIDSKKY---ETAKKFGV 239 (378)
T ss_dssp TSCHHHHGG-GGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHH-HHTCSCEEEECSCTTHH---HHHHTTTC
T ss_pred CCCHHHhhh-hhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCHHHH---HHHHHcCC
Confidence 467766543 2211211 13 3458999999999987445555555554 5577 566666554333 35677888
Q ss_pred eEEEEe
Q psy2835 99 NICVVE 104 (305)
Q Consensus 99 ~~v~~~ 104 (305)
+.++..
T Consensus 240 ~~vi~~ 245 (378)
T 3uko_A 240 NEFVNP 245 (378)
T ss_dssp CEEECG
T ss_pred cEEEcc
Confidence 887754
No 188
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=33.73 E-value=2.2e+02 Score=24.53 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 41 AFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 41 ~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
...+.| +++|+.|+- ...+..-..+.+++...|..+..+=|.....+-...++..++++++++.
T Consensus 151 ~a~~~G~l~~g~tVV~-aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~ 215 (435)
T 1jbq_A 151 DAERDGTLKPGDTIIE-PTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215 (435)
T ss_dssp HHHHHTCSCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecC
Confidence 334455 466665443 3445666667777788898776655544445667788999999999874
No 189
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=33.58 E-value=76 Score=26.38 Aligned_cols=54 Identities=15% Similarity=-0.010 Sum_probs=38.1
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.+++...|..++.+-|.. ....-...++..++++++++..
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~ 133 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGN 133 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 44445556666667788888898766655443 4455667889999999999875
No 190
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=33.49 E-value=50 Score=28.03 Aligned_cols=53 Identities=11% Similarity=-0.035 Sum_probs=28.1
Q ss_pred CCCC--eEEEEecCChhHHHHHHHHHHcCCeE--EecCCC---CCHHHHHHHHhhCCceEEEE
Q psy2835 48 ERYH--SVCIIGFNAPEWFYSDLGAIYAGGFA--AGMYTT---NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 48 ~~gd--~V~i~~~n~~~~~~~~~a~~~~G~~~--v~i~~~---~~~~~~~~~l~~~~~~~v~~ 103 (305)
++|| .|++..+....+ ..++...|+.+ +++++. .+.+++...++..++++|+.
T Consensus 129 ~~gd~~~Vl~~~p~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l 188 (437)
T 3g0t_A 129 HKNREYGTLFIDPGFNLN---KLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIY 188 (437)
T ss_dssp CTTCSCCEEEEESCCHHH---HHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEE
T ss_pred CCCCccEEEEeCCCcHhH---HHHHHHcCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEE
Confidence 6777 777665544332 22333444444 444321 25666777775566776655
No 191
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=33.33 E-value=1.5e+02 Score=24.72 Aligned_cols=55 Identities=11% Similarity=-0.000 Sum_probs=26.4
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC--C---CCCHHHHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY--T---TNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~--~---~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++++||.|++..+....+ .-++...|+.++.++ + ..+.+++...++. ++++|+..
T Consensus 99 ~~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 158 (399)
T 2oga_A 99 GIGPGDEVIVPSHTYIAS---WLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPV 158 (399)
T ss_dssp TCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCB
T ss_pred CCCCcCEEEECCCccHHH---HHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEe
Confidence 355666666555543332 223344555544433 2 2345666655543 45555543
No 192
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=33.07 E-value=1.7e+02 Score=23.88 Aligned_cols=77 Identities=10% Similarity=-0.025 Sum_probs=45.2
Q ss_pred ccchHHHHH---HHHHHHHHHHHHcCCCCCCeEEEEecC-ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 24 EWFYSDLGA---IYAGGLAKAFLKLGLERYHSVCIIGFN-APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 24 ~~Ty~el~~---~~~~~la~~L~~~g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.+... .............++++|++|+|.... ..-..++.+|. ..|+.++.++.+.... ..++..+++
T Consensus 116 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~~~~~~---~~~~~lga~ 191 (340)
T 3gms_A 116 SIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQ-ILNFRLIAVTRNNKHT---EELLRLGAA 191 (340)
T ss_dssp TSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEESSSTTH---HHHHHHTCS
T ss_pred CCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHH-HcCCEEEEEeCCHHHH---HHHHhCCCc
Confidence 567776541 012222222244689999999999887 45555555554 5688777766543322 234456777
Q ss_pred EEEEe
Q psy2835 100 ICVVE 104 (305)
Q Consensus 100 ~v~~~ 104 (305)
.++..
T Consensus 192 ~~~~~ 196 (340)
T 3gms_A 192 YVIDT 196 (340)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77654
No 193
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=32.96 E-value=1.2e+02 Score=20.80 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=16.0
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
+|.+.|+.+...+.+-..+..+.+-++-=+++.|.
T Consensus 49 ~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~ 83 (119)
T 1ofu_X 49 WLRRAGLNRERILLLQAKDNAAALALSCEALRLGR 83 (119)
T ss_dssp HHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34444555444334444444444444444444444
No 194
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=32.88 E-value=2.1e+02 Score=25.34 Aligned_cols=64 Identities=11% Similarity=-0.047 Sum_probs=46.6
Q ss_pred HHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 41 AFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 41 ~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
...+.| +++|+.|+- ...+..-..+.++|...|..+..+-|.....+....++..++++++++.
T Consensus 103 ~a~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 103 DAEEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 344556 467776644 5666677777788888898877665555556677889999999999975
No 195
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=32.85 E-value=1e+02 Score=25.57 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=40.5
Q ss_pred HHHHcCCC-CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 41 AFLKLGLE-RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 41 ~L~~~g~~-~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.+.+.+++ +|++|+|+.....-...+.+|-. .|+.++.++.+. +.+....+..+++.++...+
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~~--~~~~~~~~~lGa~~vi~~~~ 234 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSSN--KKREEALQDLGADDYVIGSD 234 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESST--THHHHHHTTSCCSCEEETTC
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCh--HHHHHHHHHcCCceeecccc
Confidence 35566888 99999999875555555555554 577766665442 33444444778887765443
No 196
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=32.75 E-value=76 Score=27.32 Aligned_cols=34 Identities=9% Similarity=-0.057 Sum_probs=19.6
Q ss_pred HcCCeEEecCCC----CCHHHHHHHHhh-CCceEEEEeC
Q psy2835 72 YAGGFAAGMYTT----NSPEACLHCLVT-SDANICVVED 105 (305)
Q Consensus 72 ~~G~~~v~i~~~----~~~~~~~~~l~~-~~~~~v~~~~ 105 (305)
..|+.+..++.. .+.+++...+++ .++++|+++.
T Consensus 146 ~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 146 EFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp GGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred HcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 346665555542 456666666654 4566666655
No 197
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=32.52 E-value=91 Score=27.31 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=28.8
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecC--C----CCCHHHHHHHHhhC-----CceEEEE
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY--T----TNSPEACLHCLVTS-----DANICVV 103 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~--~----~~~~~~~~~~l~~~-----~~~~v~~ 103 (305)
.+||.|++-.+....+. -++...|+.+++++ . ....+++...++.. ++++|++
T Consensus 180 ~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl 243 (500)
T 3tcm_A 180 NEKDGILVPIPQYPLYS---ASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVV 243 (500)
T ss_dssp STTEEEEEEESCCTHHH---HHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeCCCcHhHH---HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEE
Confidence 46677666665544332 23334455554433 2 44567777777653 5666554
No 198
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=32.25 E-value=62 Score=26.75 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEeC
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
...++++||.|++..+.... ...++...|+.++.++.. .+.+++...++. ++++|+...
T Consensus 68 ~~~~~~~gd~Vi~~~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 131 (367)
T 3nyt_A 68 MALGVGPGDEVITPGFTYVA---TAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPVS 131 (367)
T ss_dssp HHTTCCTTCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCBC
T ss_pred HHhCCCCcCEEEECCCccHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCc-CCcEEEeeC
Confidence 34456777777665554333 333445667665555422 245666655532 556666443
No 199
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=31.91 E-value=2.1e+02 Score=23.46 Aligned_cols=14 Identities=0% Similarity=-0.270 Sum_probs=8.6
Q ss_pred ceEechhHHHHHHH
Q psy2835 182 PVMLSHDNITFNAA 195 (305)
Q Consensus 182 ~v~~s~~~l~~~~~ 195 (305)
|.++..+.+...+.
T Consensus 215 G~~~~~~~~~~~~~ 228 (393)
T 2huf_A 215 TPVSFSHRAVERYK 228 (393)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEECHHHHHHHh
Confidence 56777676665443
No 200
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=31.91 E-value=1.1e+02 Score=25.35 Aligned_cols=76 Identities=14% Similarity=0.003 Sum_probs=45.7
Q ss_pred CccchHHHHHHHHHHH--H-HHH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 23 PEWFYSDLGAIYAGGL--A-KAF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~l--a-~~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
..+++.+... +.... | ..| ...++++|++|+|......-...+.+| ...|+.++.++.+ .+. ...++..++
T Consensus 160 ~~~~~~~aa~-l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~--~~~-~~~~~~lGa 234 (363)
T 3uog_A 160 KSLDAAEAST-LPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSS--REK-LDRAFALGA 234 (363)
T ss_dssp TTSCHHHHHT-TTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESC--HHH-HHHHHHHTC
T ss_pred CCCCHHHHhh-cccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecC--chh-HHHHHHcCC
Confidence 3577777653 22121 1 233 345799999999999444444444444 4578877766543 333 344677788
Q ss_pred eEEEE
Q psy2835 99 NICVV 103 (305)
Q Consensus 99 ~~v~~ 103 (305)
+.++.
T Consensus 235 ~~vi~ 239 (363)
T 3uog_A 235 DHGIN 239 (363)
T ss_dssp SEEEE
T ss_pred CEEEc
Confidence 87776
No 201
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=31.77 E-value=1.9e+02 Score=22.92 Aligned_cols=81 Identities=10% Similarity=-0.133 Sum_probs=52.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC-----------CeEEecCC--CCCHHHH
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG-----------GFAAGMYT--TNSPEAC 89 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G-----------~~~v~i~~--~~~~~~~ 89 (305)
..|++.+..++.+..+-.++++.|.+ .|.+-+.-+.++.++..-|..++ .+.+.++. ..+.++.
T Consensus 14 ~~~~~~~~i~~~~~~L~d~v~~~g~~---~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~~d~~~A 90 (271)
T 1kqp_A 14 PSIDPKQEIEDRVNFLKQYVKKTGAK---GFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQDEDDA 90 (271)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHTCC---EEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSCTTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCC---CEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCCCCHHHH
Confidence 35677766554577777777777643 57788888999877655444433 33444443 3356677
Q ss_pred HHHHhhCCc-eEEEEeCh
Q psy2835 90 LHCLVTSDA-NICVVEDD 106 (305)
Q Consensus 90 ~~~l~~~~~-~~v~~~~~ 106 (305)
+.+.+..+. ...+.+-.
T Consensus 91 ~~va~~lgi~~~~~i~i~ 108 (271)
T 1kqp_A 91 QLALKFIKPDKSWKFDIK 108 (271)
T ss_dssp HHHHHHHCCSEEEECCCH
T ss_pred HHHHHhcCCCeEEEeccH
Confidence 778888887 77666643
No 202
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=31.62 E-value=1.6e+02 Score=24.45 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=37.9
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
...++++|++|+|+.....-..++.+|- ..|+ .++.++.+ ++-..+++..+++.++...
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~~Vi~~~~~---~~~~~~a~~lGa~~vi~~~ 243 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAK-VCGASIIIAVDIV---ESRLELAKQLGATHVINSK 243 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHH-HHTCSEEEEEESC---HHHHHHHHHHTCSEEEETT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEECCC---HHHHHHHHHcCCCEEecCC
Confidence 3458999999999986444555555554 4577 45555543 3334455677888777543
No 203
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=31.59 E-value=1.1e+02 Score=25.10 Aligned_cols=53 Identities=6% Similarity=-0.211 Sum_probs=26.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~ 103 (305)
+++||.|++..+...... .++...|+.++.++.. .+.+++...++. ++++|+.
T Consensus 71 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 127 (375)
T 2fnu_A 71 SADRNEIITTPISFVATA---NMLLESGYTPVFAGIKNDGNIDELALEKLINE-RTKAIVS 127 (375)
T ss_dssp CTTSCEEEECSSSCTHHH---HHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT-TEEEEEE
T ss_pred CCCCCEEEECCCccHhHH---HHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc-CceEEEE
Confidence 567777666544443322 2344567666555432 345555555543 4555443
No 204
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=31.36 E-value=2.2e+02 Score=23.41 Aligned_cols=76 Identities=14% Similarity=-0.009 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHHHHHH---H-HHcCCCCCCeEEEEecCC-hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAKA---F-LKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~---L-~~~g~~~gd~V~i~~~n~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +....+.. | ...++++|++|+|..-.+ .-..++.++ ...|+.++.++.+ .+.+ ..++..++
T Consensus 139 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~--~~~~-~~~~~lGa 213 (353)
T 4dup_A 139 GYDAVKAAA-LPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGS--TGKC-EACERLGA 213 (353)
T ss_dssp TCCHHHHHT-SHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESS--HHHH-HHHHHHTC
T ss_pred CCCHHHHhh-hhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCC--HHHH-HHHHhcCC
Confidence 577777653 23333322 3 345789999999995544 444444444 4678877766543 3333 44566788
Q ss_pred eEEEEe
Q psy2835 99 NICVVE 104 (305)
Q Consensus 99 ~~v~~~ 104 (305)
+.++..
T Consensus 214 ~~~~~~ 219 (353)
T 4dup_A 214 KRGINY 219 (353)
T ss_dssp SEEEET
T ss_pred CEEEeC
Confidence 877654
No 205
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=31.25 E-value=2.3e+02 Score=23.57 Aligned_cols=11 Identities=0% Similarity=0.138 Sum_probs=8.0
Q ss_pred ceEechhHHHH
Q psy2835 182 PVMLSHDNITF 192 (305)
Q Consensus 182 ~v~~s~~~l~~ 192 (305)
|+++..+.++.
T Consensus 221 G~~~~~~~~~~ 231 (398)
T 2rfv_A 221 GIIVGKQEFID 231 (398)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEECHHHHH
Confidence 77777777665
No 206
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=31.15 E-value=1.6e+02 Score=25.32 Aligned_cols=34 Identities=6% Similarity=-0.127 Sum_probs=21.2
Q ss_pred HcCCeEEecCC---CCCHHHHHHHHhh-CCceEEEEeC
Q psy2835 72 YAGGFAAGMYT---TNSPEACLHCLVT-SDANICVVED 105 (305)
Q Consensus 72 ~~G~~~v~i~~---~~~~~~~~~~l~~-~~~~~v~~~~ 105 (305)
..|+.+..++. ..+.+++...+++ .++++|+++.
T Consensus 147 ~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 147 EYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp GGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred HcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 45666666554 2456677777764 5677777765
No 207
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=31.12 E-value=82 Score=22.09 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=22.9
Q ss_pred CeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 51 HSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 51 d~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
|.|.+..+ .....-++..|...|...+.+.+....+++....++.+.+
T Consensus 71 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 71 DVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp CEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE
Confidence 33333333 3333334444555555555555554455555555555544
No 208
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=30.66 E-value=2.2e+02 Score=24.01 Aligned_cols=10 Identities=0% Similarity=-0.090 Sum_probs=5.0
Q ss_pred hhCCceEEEE
Q psy2835 94 VTSDANICVV 103 (305)
Q Consensus 94 ~~~~~~~v~~ 103 (305)
+..+.+++.+
T Consensus 119 ~~~g~~~~~~ 128 (421)
T 2ctz_A 119 KRLGIEVRFT 128 (421)
T ss_dssp HHTTCEEEEC
T ss_pred HHcCCEEEEE
Confidence 4445555554
No 209
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=30.51 E-value=1.3e+02 Score=25.88 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHHHHHH---HH---HcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCC
Q psy2835 24 EWFYSDLGAIYAGGLAKA---FL---KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~---L~---~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 97 (305)
.+++.+... ........ |. ..++++|++|+|....+.-=..+...+...|+.++.+.. +.+.+ ..++..+
T Consensus 190 ~ls~~~aA~-l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~--~~~~~-~~~~~lG 265 (447)
T 4a0s_A 190 HLTWEEAAV-SPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS--SAQKE-AAVRALG 265 (447)
T ss_dssp TSCHHHHHT-SHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES--SHHHH-HHHHHTT
T ss_pred CCCHHHHHH-hHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC--CHHHH-HHHHhcC
Confidence 577777653 22222222 21 257899999999987554333344444467887776653 34444 4457788
Q ss_pred ceEEEEe
Q psy2835 98 ANICVVE 104 (305)
Q Consensus 98 ~~~v~~~ 104 (305)
++.++..
T Consensus 266 a~~~i~~ 272 (447)
T 4a0s_A 266 CDLVINR 272 (447)
T ss_dssp CCCEEEH
T ss_pred CCEEEec
Confidence 8877653
No 210
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=30.43 E-value=88 Score=26.34 Aligned_cols=54 Identities=15% Similarity=0.022 Sum_probs=39.2
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.++|...|..+..+-|...+......++..++++++++..
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 148 (372)
T 1p5j_A 95 HFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGEL 148 (372)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSC
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCC
Confidence 344444466667777788888987776655555566777899999999999864
No 211
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=30.04 E-value=70 Score=18.12 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=14.8
Q ss_pred HHHcCCCCCCeEEEEecCC
Q psy2835 42 FLKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 42 L~~~g~~~gd~V~i~~~n~ 60 (305)
..++|+.+||.|.+...+.
T Consensus 21 r~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 21 RQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHSCCCTTCEEEEEECSS
T ss_pred HHHcCcCCCCEEEEEEECC
Confidence 3457999999998876654
No 212
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=29.90 E-value=2e+02 Score=22.47 Aligned_cols=75 Identities=11% Similarity=-0.153 Sum_probs=49.3
Q ss_pred cchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcC----CeEEecCCCCC--HHHHHHHHhhCCc
Q psy2835 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG----GFAAGMYTTNS--PEACLHCLVTSDA 98 (305)
Q Consensus 25 ~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G----~~~v~i~~~~~--~~~~~~~l~~~~~ 98 (305)
+.++++.+ ++..+|++. .++.|++...-+.++.++..-+...+ ...+.++...+ .+....+.+..+.
T Consensus 4 ~~~~~~~~----~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi 76 (257)
T 2e18_A 4 LDYDKVIE----RILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGI 76 (257)
T ss_dssp ECHHHHHH----HHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTC
T ss_pred CCHHHHHH----HHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCC
Confidence 44555555 355666665 35679999999999988777666653 34555565443 3345666778888
Q ss_pred eEEEEeCh
Q psy2835 99 NICVVEDD 106 (305)
Q Consensus 99 ~~v~~~~~ 106 (305)
+..+.+-.
T Consensus 77 ~~~~i~i~ 84 (257)
T 2e18_A 77 GYKVINIK 84 (257)
T ss_dssp EEEECCCH
T ss_pred CEEEEECh
Confidence 88887754
No 213
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=29.89 E-value=1.2e+02 Score=24.37 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=45.9
Q ss_pred ccchHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceE
Q psy2835 24 EWFYSDLGAIYAGGLA---KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANI 100 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la---~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 100 (305)
.+++.+... +...++ +.|...++++|++|+|+.....-.+.+.+|- ..|+.++.+. +-.. ...+++.+++.
T Consensus 115 ~~~~~~aa~-l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~~~~---~~~~~~lGa~~ 188 (315)
T 3goh_A 115 NLSFERAAA-LPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-ASLS---QALAAKRGVRH 188 (315)
T ss_dssp TSCHHHHHT-SHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-SSCC---HHHHHHHTEEE
T ss_pred CCCHHHHhh-CccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-Chhh---HHHHHHcCCCE
Confidence 577877653 222222 2334557899999999998445555555554 5688777776 3222 23356678888
Q ss_pred EE
Q psy2835 101 CV 102 (305)
Q Consensus 101 v~ 102 (305)
++
T Consensus 189 v~ 190 (315)
T 3goh_A 189 LY 190 (315)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 214
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=29.71 E-value=1.4e+02 Score=24.87 Aligned_cols=76 Identities=11% Similarity=-0.010 Sum_probs=44.1
Q ss_pred ccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +...++. .+ ...++++|++|+|+..-..-..++.+|- ..|+ .++.++.+-. . ...++..++
T Consensus 167 ~l~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~~~--~-~~~a~~lGa 241 (376)
T 1e3i_A 167 EANLERVCL-IGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCK-IAGASRIIAIDINGE--K-FPKAKALGA 241 (376)
T ss_dssp TCCHHHHGG-GGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGG--G-HHHHHHTTC
T ss_pred CCCHHHhhh-hccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCHH--H-HHHHHHhCC
Confidence 467776543 2211111 23 3458999999999986444555555554 4687 5666654422 2 234567788
Q ss_pred eEEEEe
Q psy2835 99 NICVVE 104 (305)
Q Consensus 99 ~~v~~~ 104 (305)
+.++..
T Consensus 242 ~~vi~~ 247 (376)
T 1e3i_A 242 TDCLNP 247 (376)
T ss_dssp SEEECG
T ss_pred cEEEcc
Confidence 877653
No 215
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=29.54 E-value=75 Score=22.41 Aligned_cols=47 Identities=13% Similarity=-0.092 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe-EEecCCC
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF-AAGMYTT 83 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~-~v~i~~~ 83 (305)
.+...|.+.|+.++..|.++|..+.....+...+...|.. +..++-.
T Consensus 67 ~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG 114 (148)
T 2fsx_A 67 ELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDG 114 (148)
T ss_dssp HHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTT
T ss_pred HHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCC
Confidence 3444454567777888999998888777777777788863 4444433
No 216
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=29.43 E-value=1.6e+02 Score=27.49 Aligned_cols=47 Identities=4% Similarity=-0.208 Sum_probs=34.3
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC---------C-----CHHHHHHHHhhC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT---------N-----SPEACLHCLVTS 96 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~---------~-----~~~~~~~~l~~~ 96 (305)
+++||.|.+--+++.... -|+...|+.++.+++. . +.++++..++..
T Consensus 232 ~~pGD~VLv~r~~H~S~~---~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~ 292 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLT---HLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKET 292 (715)
T ss_dssp CCTTCEEEEESSCCHHHH---HHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCccHHHH---HHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhC
Confidence 679998887766554433 4678899999888763 2 578898888753
No 217
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.30 E-value=1.3e+02 Score=20.12 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=13.5
Q ss_pred CHHHHHHHHhhCCceEEEEe
Q psy2835 85 SPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 85 ~~~~~~~~l~~~~~~~v~~~ 104 (305)
+.++....++...++++++|
T Consensus 35 ~~~~a~~~l~~~~~dlvi~d 54 (140)
T 2qr3_A 35 SPVSLSTVLREENPEVVLLD 54 (140)
T ss_dssp CHHHHHHHHHHSCEEEEEEE
T ss_pred CHHHHHHHHHcCCCCEEEEe
Confidence 45566666667777777776
No 218
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=29.21 E-value=1e+02 Score=25.71 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=38.3
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.+++...|..++.+-|.. ....-...++..++++++++..
T Consensus 87 ~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~ 141 (360)
T 2d1f_A 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGN 141 (360)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSSC
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34444555566666788888898877665554 4455667899999999999875
No 219
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=28.73 E-value=2.4e+02 Score=23.11 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=14.4
Q ss_pred CCCCcceEechhHHHHHHHHH
Q psy2835 177 EGASKPVMLSHDNITFNAACI 197 (305)
Q Consensus 177 TG~pK~v~~s~~~l~~~~~~~ 197 (305)
.|.+-|.++..+.+...+...
T Consensus 242 ~G~r~G~~~~~~~~~~~l~~~ 262 (388)
T 1j32_A 242 TGWRVGFLAGPVPLVKAATKI 262 (388)
T ss_dssp TTTCCEEEECCHHHHHHHHHH
T ss_pred cccceEEEEeCHHHHHHHHHH
Confidence 455578888888777665543
No 220
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=28.50 E-value=2.4e+02 Score=23.24 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=14.3
Q ss_pred CCCCcceEechhHHHHHHHHHH
Q psy2835 177 EGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 177 TG~pK~v~~s~~~l~~~~~~~~ 198 (305)
+|.+-|.++..+.+...+....
T Consensus 251 ~G~r~G~l~~~~~~~~~l~~~~ 272 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATAVSKIQ 272 (389)
T ss_dssp GGGCCEEEECCHHHHHHHHHHH
T ss_pred cccceEEEEeCHHHHHHHHHHh
Confidence 3444688888887776665543
No 221
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=28.26 E-value=2.4e+02 Score=22.89 Aligned_cols=71 Identities=10% Similarity=-0.108 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHc----C---CeEEecCCCCC---H---HHHHHHHhhCCceE
Q psy2835 35 AGGLAKAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYA----G---GFAAGMYTTNS---P---EACLHCLVTSDANI 100 (305)
Q Consensus 35 ~~~la~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~----G---~~~v~i~~~~~---~---~~~~~~l~~~~~~~ 100 (305)
.+++.+.+.+.+ +.++++|++...-+.++.+++..+... | ..++-++.... . +.+..+.+..+.++
T Consensus 8 ~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~ 87 (317)
T 1wy5_A 8 IRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKI 87 (317)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcE
Confidence 445666677655 578899999999999999988887764 3 44566776653 1 22445556666666
Q ss_pred EEEeC
Q psy2835 101 CVVED 105 (305)
Q Consensus 101 v~~~~ 105 (305)
.+.+-
T Consensus 88 ~v~~~ 92 (317)
T 1wy5_A 88 FVGKE 92 (317)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66653
No 222
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=28.19 E-value=1.6e+02 Score=24.14 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHcCCCCCCeEEEEecC-ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 41 AFLKLGLERYHSVCIIGFN-APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.|.+.++++|++|+|.... ..-..++.++....|+.++.++.+ .+.+ ..++..+++.++.
T Consensus 162 ~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~--~~~~-~~~~~~g~~~~~~ 222 (347)
T 1jvb_A 162 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR--EEAV-EAAKRAGADYVIN 222 (347)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS--HHHH-HHHHHHTCSEEEE
T ss_pred HHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCC--HHHH-HHHHHhCCCEEec
Confidence 3455789999999999887 455555555554338877666543 3333 3345567776654
No 223
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=28.15 E-value=2.4e+02 Score=22.94 Aligned_cols=14 Identities=7% Similarity=-0.187 Sum_probs=8.7
Q ss_pred cceEechhHHHHHH
Q psy2835 181 KPVMLSHDNITFNA 194 (305)
Q Consensus 181 K~v~~s~~~l~~~~ 194 (305)
-|+++..+.+...+
T Consensus 216 ~G~~~~~~~~~~~~ 229 (386)
T 2dr1_A 216 LAIGAFSERFLEIA 229 (386)
T ss_dssp CEEEEECHHHHHHH
T ss_pred eEEEEECHHHHHHH
Confidence 36777777665543
No 224
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=28.12 E-value=1.7e+02 Score=23.87 Aligned_cols=60 Identities=13% Similarity=-0.045 Sum_probs=39.0
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
...++++|++|+|....+.-=..+...+...|+.++.+.. +.+.++...+..+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 4458999999999988554433344444567887766653 34455554477888777653
No 225
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=28.04 E-value=1.1e+02 Score=24.11 Aligned_cols=41 Identities=12% Similarity=-0.202 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCCh-hHHHHHHHHHHcCCe
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAP-EWFYSDLGAIYAGGF 76 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~-~~~~~~~a~~~~G~~ 76 (305)
+.++..+.+.|+.+++.|.+++.++. ....+.+.+...|..
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~ 108 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQ 108 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCC
Confidence 45777778888988889999988775 566666667777863
No 226
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=27.80 E-value=1.2e+02 Score=25.14 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=13.3
Q ss_pred CCCcceEechhHHHHHHHHHH
Q psy2835 178 GASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 178 G~pK~v~~s~~~l~~~~~~~~ 198 (305)
|..=|.++..+.++..+....
T Consensus 212 g~~~G~~~~~~~~~~~l~~~~ 232 (374)
T 2aeu_A 212 GPRGGLLAGKKELVDKIYIEG 232 (374)
T ss_dssp SCSCEEEEEEHHHHHHHHHHH
T ss_pred CcceEEEEECHHHHHHHHHhh
Confidence 444567777777777665543
No 227
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=27.77 E-value=1.5e+02 Score=24.61 Aligned_cols=76 Identities=13% Similarity=0.046 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +...++. .+ ...++++|++|+|......-..++.+|-. .|+ .++.++.+-.. ..+++..++
T Consensus 162 ~l~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~-~Ga~~Vi~~~~~~~~---~~~~~~lGa 236 (373)
T 2fzw_A 162 LAPLDKVCL-LGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDINKDK---FARAKEFGA 236 (373)
T ss_dssp TSCHHHHGG-GGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGG---HHHHHHHTC
T ss_pred CCCHHHHhh-hccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHH---HHHHHHcCC
Confidence 477776543 2211221 23 34589999999999865555666666554 577 56666544322 233456677
Q ss_pred eEEEEe
Q psy2835 99 NICVVE 104 (305)
Q Consensus 99 ~~v~~~ 104 (305)
+.++..
T Consensus 237 ~~vi~~ 242 (373)
T 2fzw_A 237 TECINP 242 (373)
T ss_dssp SEEECG
T ss_pred ceEecc
Confidence 776643
No 228
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=27.72 E-value=2.3e+02 Score=22.50 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=40.6
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhH
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEW 63 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~ 63 (305)
.+++...+.-|+..++...+ ...+|.++.++ +...+..|.+.|++ ..++.-|+...
T Consensus 21 tv~~~i~~~lp~~~~iy~~D~a~~PYG~~~~~~i~~~-~~~~~~~L~~~g~~----~iVIACNTa~~ 82 (268)
T 3out_A 21 TIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKF-AAQTAKFLIDQEVK----AIIIACNTISA 82 (268)
T ss_dssp HHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHH-HHHHHHHHHHTTCS----EEEECCHHHHH
T ss_pred HHHHHHHHHCCCCcEEEecCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCCC----EEEEeCCChHH
Confidence 35666777788766664433 36899999995 99999999988753 66666677654
No 229
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=27.69 E-value=1.6e+02 Score=24.54 Aligned_cols=58 Identities=5% Similarity=-0.170 Sum_probs=28.4
Q ss_pred CCCCCeEEEEecCChhHH--HHHHHHHHcCCeEEec--C---CCCCHHHHHHHHhhCCceEEEEe
Q psy2835 47 LERYHSVCIIGFNAPEWF--YSDLGAIYAGGFAAGM--Y---TTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~--~~~~a~~~~G~~~v~i--~---~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+++||.|++..+...... .........+..++++ + ...+.+++...++..++++|++.
T Consensus 115 ~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 179 (425)
T 3ecd_A 115 AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAG 179 (425)
T ss_dssp CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEc
Confidence 567888877765443311 1111122223344444 3 24578888888876677777776
No 230
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=27.65 E-value=70 Score=27.21 Aligned_cols=54 Identities=13% Similarity=-0.073 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHH-HcCCeEEecCCC------CCHHHHHHHHhh-----CCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAI-YAGGFAAGMYTT------NSPEACLHCLVT-----SDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~-~~G~~~v~i~~~------~~~~~~~~~l~~-----~~~~~v~~~ 104 (305)
++||.|++..+....+.- ++. ..|+.+++++.. .+.+++...++. .++++|+..
T Consensus 133 ~~gd~vl~~~p~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~ 198 (435)
T 3piu_A 133 DPGEAVLIPTPYYPGFDR---DLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVT 198 (435)
T ss_dssp CTTCEEEEEESCCTTHHH---HTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCeEEECCCccccHHH---HHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 567887777766554432 223 467766665543 467778777765 266766543
No 231
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=27.64 E-value=1.4e+02 Score=25.20 Aligned_cols=16 Identities=0% Similarity=0.021 Sum_probs=9.5
Q ss_pred ceEec-hhHHHHHHHHH
Q psy2835 182 PVMLS-HDNITFNAACI 197 (305)
Q Consensus 182 ~v~~s-~~~l~~~~~~~ 197 (305)
|+++. .+.+...+...
T Consensus 224 G~v~~~~~~l~~~l~~~ 240 (403)
T 3cog_A 224 GLVSVNCESLHNRLRFL 240 (403)
T ss_dssp EEEEECCHHHHHHHHHH
T ss_pred EEEEECcHHHHHHHHHH
Confidence 67776 46666555443
No 232
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=27.52 E-value=1.1e+02 Score=25.14 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=32.7
Q ss_pred HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q psy2835 43 LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
...++++||.|++..+....+ ..++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 71 ~~~~~~~gd~v~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~ 132 (374)
T 3uwc_A 71 KMLNIGAGDEVITCANTFIAS---VGAIVQAGATPVLVDSENGYVIDPEKIEAAITD-KTKAIMPV 132 (374)
T ss_dssp HHTTCCTTCEEEEESSSCHHH---HHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT-TEEEECCB
T ss_pred HHcCCCCCCEEEECCCccHHH---HHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC-CceEEEEe
Confidence 334567788777766544433 23455667766655542 245566665554 56666643
No 233
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=27.51 E-value=2.7e+02 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=17.2
Q ss_pred CCCCCCcceEechhHHHHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAACII 198 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~~~~ 198 (305)
|..|.+-|.++....++..+....
T Consensus 250 g~~G~r~G~~~~~~~~~~~~~~~~ 273 (422)
T 3fvs_A 250 SATGWKVGWVLGPDHIMKHLRTVH 273 (422)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHH
T ss_pred CCccceEEEEEeCHHHHHHHHHHH
Confidence 456777888888888877665543
No 234
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=27.40 E-value=90 Score=25.93 Aligned_cols=54 Identities=13% Similarity=-0.036 Sum_probs=37.8
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCC-CHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN-SPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~-~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.+++...|..++.+-|.. ....-...++..++++++++..
T Consensus 81 ~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~ 135 (352)
T 2zsj_A 81 AVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGT 135 (352)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSC
T ss_pred EEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34444556666666788888898766655543 4455667899999999999875
No 235
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=27.35 E-value=1.6e+02 Score=24.44 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=43.7
Q ss_pred ccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +...++. .+ ...++++|++|+|......-..++.+|- ..|+ .++.++.+-. . ...++..++
T Consensus 163 ~l~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~~~--~-~~~~~~lGa 237 (374)
T 2jhf_A 163 ASPLEKVCL-IGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCK-AAGAARIIGVDINKD--K-FAKAKEVGA 237 (374)
T ss_dssp TCCHHHHGG-GGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGG--G-HHHHHHTTC
T ss_pred CCCHHHhhh-hccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCHH--H-HHHHHHhCC
Confidence 467766543 2211221 23 3458999999999986445555555554 4577 5666654422 2 234567788
Q ss_pred eEEEEe
Q psy2835 99 NICVVE 104 (305)
Q Consensus 99 ~~v~~~ 104 (305)
+.++..
T Consensus 238 ~~vi~~ 243 (374)
T 2jhf_A 238 TECVNP 243 (374)
T ss_dssp SEEECG
T ss_pred ceEecc
Confidence 777643
No 236
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=27.22 E-value=2e+02 Score=23.78 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHcCCC-CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 41 AFLKLGLE-RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 41 ~L~~~g~~-~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.|.+.++. +|++|+|......-..++.+|- ..|+.++.++.+ .+.+....+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVISTS--PSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESC--GGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHHHHHHHhcCCceEEecc
Confidence 45566888 9999999987555555555554 568876655543 34444445577888776543
No 237
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=27.12 E-value=1.2e+02 Score=24.09 Aligned_cols=40 Identities=13% Similarity=-0.102 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHHHcCC
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAIYAGG 75 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~ 75 (305)
..+...+.+.|+.+++.|.+++..+.. ...+.+.+...|.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~ 112 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGV 112 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 456777788899999999999887765 5666667777786
No 238
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=27.11 E-value=1.3e+02 Score=21.09 Aligned_cols=39 Identities=8% Similarity=-0.227 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 61 PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 61 ~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
....-++-.|...|...+.+.+....+++....+..+.+
T Consensus 88 ~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~ 126 (144)
T 2d59_A 88 KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLI 126 (144)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCE
Confidence 344444445556666555566666666666666666665
No 239
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=27.10 E-value=1.6e+02 Score=25.01 Aligned_cols=16 Identities=0% Similarity=-0.093 Sum_probs=11.6
Q ss_pred ceEechhHHHHHHHHH
Q psy2835 182 PVMLSHDNITFNAACI 197 (305)
Q Consensus 182 ~v~~s~~~l~~~~~~~ 197 (305)
|.+...+.++..+...
T Consensus 238 G~v~~~~~li~~l~~~ 253 (409)
T 3jzl_A 238 GYIAGKEALVDLCGYR 253 (409)
T ss_dssp EEEEECHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHH
Confidence 7778888887766553
No 240
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.14 E-value=1.3e+02 Score=21.68 Aligned_cols=37 Identities=19% Similarity=0.031 Sum_probs=32.4
Q ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 69 GAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 69 a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.+-..|.-++-+....+++++...+.+.+|++|..+.
T Consensus 41 ~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 41 ALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp HHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 3445799999999999999999999999999999864
No 241
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.03 E-value=1.4e+02 Score=19.60 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=43.3
Q ss_pred CCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh----HHHHHHHHHhccCCCccEE
Q psy2835 50 YHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD----KQLEKILKVKAQCPKLKAI 125 (305)
Q Consensus 50 gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~ 125 (305)
+-+|.++-++....-..--.+...|..+.. ..+.++....++..++++|++|-. ...+.+..+....+....+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVL---AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEE---ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEE---eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 346777766554433333334455766553 335677777888889999999743 1234444555555555555
Q ss_pred E
Q psy2835 126 V 126 (305)
Q Consensus 126 i 126 (305)
+
T Consensus 84 ~ 84 (130)
T 3eod_A 84 V 84 (130)
T ss_dssp E
T ss_pred E
Confidence 4
No 242
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=25.75 E-value=1.4e+02 Score=25.89 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChh--------------HHHHHHHHHHcCCeEEecCCCCC
Q psy2835 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE--------------WFYSDLGAIYAGGFAAGMYTTNS 85 (305)
Q Consensus 27 y~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~--------------~~~~~~a~~~~G~~~v~i~~~~~ 85 (305)
..++.. ++..+|. +.++. .+.|++.++..-. ..-....+..+|..-+.+|.+..
T Consensus 68 p~~f~~-~V~~~A~---~~~vP-v~pV~LhlDHg~~~~w~~~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~ 135 (450)
T 3txv_A 68 PEDFTR-FVGAIAD---RIEFP-REKILLGGDHLGPNPWKHLPADEAMAKAEAMITAYAKAGFTKLHLDTSMG 135 (450)
T ss_dssp HHHHHH-HHHHHHH---HTTCC-GGGEEEEEEEESSGGGTTSCHHHHHHHHHHHHHHHHTTTCCEEEECCCBC
T ss_pred HHHHHH-HHHHHHH---HcCcC-cccEEEECCCCCCcccccccHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 367777 5777764 45654 4568998888744 37788999999999999999875
No 243
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=25.60 E-value=2.7e+02 Score=22.56 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=37.9
Q ss_pred cCCCCCCeEEEEecCC-hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 45 LGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
.++++|++|+|....+ .-..++.++ ...|+.++.++. +.+.+. .++..+++.++...
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~~ 201 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINAS 201 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeCC
Confidence 3789999999998554 444444444 467887776664 334443 56778888777643
No 244
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=25.59 E-value=2.9e+02 Score=22.96 Aligned_cols=77 Identities=14% Similarity=-0.040 Sum_probs=45.3
Q ss_pred ccchHHHHHHHHHHHH---HHHHHcC-CCCCCeEEEEecCChhHHHHHHHHHHcC-CeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLA---KAFLKLG-LERYHSVCIIGFNAPEWFYSDLGAIYAG-GFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la---~~L~~~g-~~~gd~V~i~~~n~~~~~~~~~a~~~~G-~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... ....++ ..+...+ +++|++|+|......-...+.+|- ..| +.++.+..+ ++-...++..++
T Consensus 167 ~l~~~~~Aa-~~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~---~~~~~~~~~lGa 241 (380)
T 1vj0_A 167 KDDLDVLAM-AMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIAR-SLGAENVIVIAGS---PNRLKLAEEIGA 241 (380)
T ss_dssp TSCHHHHHH-HTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHH-HTTBSEEEEEESC---HHHHHHHHHTTC
T ss_pred CCChHHhHh-hhcHHHHHHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHH-HcCCceEEEEcCC---HHHHHHHHHcCC
Confidence 467773222 222222 2344567 899999999994444555555544 568 466666543 233445667888
Q ss_pred eEEEEeC
Q psy2835 99 NICVVED 105 (305)
Q Consensus 99 ~~v~~~~ 105 (305)
+.++...
T Consensus 242 ~~vi~~~ 248 (380)
T 1vj0_A 242 DLTLNRR 248 (380)
T ss_dssp SEEEETT
T ss_pred cEEEecc
Confidence 8877644
No 245
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=25.41 E-value=85 Score=21.86 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=22.5
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHcCC
Q psy2835 20 FNAPEWFYSDLGAIYAGGLAKAFLKLGL 47 (305)
Q Consensus 20 ~~~~~~Ty~el~~~~~~~la~~L~~~g~ 47 (305)
..++.++-++... .++++|.+|++.|.
T Consensus 104 ~y~e~~~~g~~~~-~ve~ladYL~~~GY 130 (130)
T 3nul_A 104 FYDEPMTGGQCNL-VVERLGDYLIESEL 130 (130)
T ss_dssp EECTTSCHHHHHH-HHHHHHHHHHHTTC
T ss_pred EcCCCCCHHHHHH-HHHHHHHHHHHcCC
Confidence 3456688899999 69999999999873
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=25.39 E-value=1.7e+02 Score=21.64 Aligned_cols=51 Identities=22% Similarity=0.126 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEecCCh--hHHHHHHHHHHcCCeEEecCCCC--CHHHHHHHHhhCC
Q psy2835 46 GLERYHSVCIIGFNAP--EWFYSDLGAIYAGGFAAGMYTTN--SPEACLHCLVTSD 97 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~--~~~~~~~a~~~~G~~~v~i~~~~--~~~~~~~~l~~~~ 97 (305)
|+.+|+.+++..+++. ..++..++. ..|..++.++... +.+.+..+.+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~ 70 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETRG 70 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTTT
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhcC
Confidence 7999999999999975 444444544 5565555555443 7777777665543
No 247
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=25.33 E-value=78 Score=21.84 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=22.4
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHcCC
Q psy2835 20 FNAPEWFYSDLGAIYAGGLAKAFLKLGL 47 (305)
Q Consensus 20 ~~~~~~Ty~el~~~~~~~la~~L~~~g~ 47 (305)
..++.++-++... .++++|.+|.+.|.
T Consensus 99 ~y~~~~~~g~~~~-~ve~ladyL~~~gy 125 (125)
T 1acf_A 99 VYNEKIQPGTAAN-VVEKLADYLIGQGF 125 (125)
T ss_dssp EECTTSCHHHHHH-HHHHHHHHHHTTTC
T ss_pred EcCCCCCHHHHHH-HHHHHHHHHHHcCC
Confidence 3456688899999 69999999999874
No 248
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=25.31 E-value=2.1e+02 Score=23.60 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCC--------------------
Q psy2835 26 FYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS-------------------- 85 (305)
Q Consensus 26 Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~-------------------- 85 (305)
+++.+.. ...+++.|.++|. .|.++++.. +.- .+-..|..+.+++...+
T Consensus 14 ~~Ghv~~--~~~La~~L~~~Gh----eV~v~~~~~--~~~---~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (402)
T 3ia7_A 14 GHGHVYP--SLGLVSELARRGH----RITYVTTPL--FAD---EVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHLV 82 (402)
T ss_dssp SHHHHHH--HHHHHHHHHHTTC----EEEEEECHH--HHH---HHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHHH
T ss_pred CCccccc--HHHHHHHHHhCCC----EEEEEcCHH--HHH---HHHHcCCEEEecccccccccccccccccchHHHHHHH
Confidence 5677765 5679999998864 577766422 211 12467888888874211
Q ss_pred --------HHHHHHHHhhCCceEEEEe
Q psy2835 86 --------PEACLHCLVTSDANICVVE 104 (305)
Q Consensus 86 --------~~~~~~~l~~~~~~~v~~~ 104 (305)
..++...+++.+|++|++|
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~pD~Vi~d 109 (402)
T 3ia7_A 83 YVRENVAILRAAEEALGDNPPDLVVYD 109 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEC
Confidence 3456777888999999998
No 249
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=25.26 E-value=2.5e+02 Score=23.22 Aligned_cols=76 Identities=12% Similarity=-0.053 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +...++. .+ ...++++|++|+|......-..++.+|- ..|+ .++.++.+-. . ...++..++
T Consensus 164 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~~~--~-~~~~~~lGa 238 (374)
T 1cdo_A 164 SAPLDTVCL-LGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCH-SAGAKRIIAVDLNPD--K-FEKAKVFGA 238 (374)
T ss_dssp TCCHHHHGG-GGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGG--G-HHHHHHTTC
T ss_pred CCCHHHHhh-hccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCHH--H-HHHHHHhCC
Confidence 477776543 2211211 13 3458999999999986444555555544 4687 5666654422 2 234567788
Q ss_pred eEEEEe
Q psy2835 99 NICVVE 104 (305)
Q Consensus 99 ~~v~~~ 104 (305)
+.++..
T Consensus 239 ~~vi~~ 244 (374)
T 1cdo_A 239 TDFVNP 244 (374)
T ss_dssp CEEECG
T ss_pred ceEEec
Confidence 877643
No 250
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=25.19 E-value=2e+02 Score=23.75 Aligned_cols=53 Identities=8% Similarity=-0.084 Sum_probs=27.7
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC-----CceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS-----DANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~-----~~~~v~~~ 104 (305)
++||.|++-.+.... ..-++...|+.+++++ ..+.+++...++.. ++++|+..
T Consensus 127 ~~gd~v~~~~~~~~~---~~~~~~~~g~~~~~~~-~~d~~~l~~~l~~~~~~~~~~~~v~~~ 184 (401)
T 1fc4_A 127 GAEDAIISDALNHAS---IIDGVRLCKAKRYRYA-NNDMQELEARLKEAREAGARHVLIATD 184 (401)
T ss_dssp CTTCEEEEETTCCHH---HHHHHHTSCSEEEEEC-TTCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred CCCCEEEEcchhHHH---HHHHHHHcCCceEEEC-CCCHHHHHHHHHHhhccCCCceEEEEe
Confidence 456665554443322 2234455666666665 23556666666542 45566654
No 251
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=25.16 E-value=2.6e+02 Score=22.35 Aligned_cols=81 Identities=9% Similarity=-0.149 Sum_probs=55.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc-------------CCeEEecCC--CCCHH
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-------------GGFAAGMYT--TNSPE 87 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~-------------G~~~v~i~~--~~~~~ 87 (305)
..+++.+..++.+..+..++++.|.+ .|++-+.-+.++.++..-|..+ ....+.++. ..+.+
T Consensus 16 ~~~~~~~~i~~~v~~L~d~l~~~g~~---~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~ 92 (279)
T 3q4g_A 16 PSIDPQFEIERRVAFIKRKLTEARYK---SLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDED 92 (279)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHTCC---EEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCC---CEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHH
Confidence 46777765554688888888888854 5888888899988877644332 234444443 33466
Q ss_pred HHHHHHhhCCc-eEEEEeCh
Q psy2835 88 ACLHCLVTSDA-NICVVEDD 106 (305)
Q Consensus 88 ~~~~~l~~~~~-~~v~~~~~ 106 (305)
+...+.+..++ +..+++-.
T Consensus 93 ~A~~~a~~lgi~~~~~i~i~ 112 (279)
T 3q4g_A 93 EAQLALSFIRPTHSVSVNIK 112 (279)
T ss_dssp HHHHHHHHHCCSEEEECCCH
T ss_pred HHHHHHHHhCCCeEEEEECH
Confidence 77888888888 77777644
No 252
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=24.88 E-value=2.4e+02 Score=23.43 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=12.6
Q ss_pred CCCCcceEe--chh----HHHHHHHHH
Q psy2835 177 EGASKPVML--SHD----NITFNAACI 197 (305)
Q Consensus 177 TG~pK~v~~--s~~----~l~~~~~~~ 197 (305)
.|.+-|.++ ..+ .+...+...
T Consensus 250 ~G~r~G~~~~~~~~~~~~~l~~~l~~~ 276 (406)
T 1xi9_A 250 TGWRLGYMYFVDPENKLSEVREAIDRL 276 (406)
T ss_dssp GGGCCEEEEEECTTCTTHHHHHHHHHH
T ss_pred CccEEEEEEEecCchhHHHHHHHHHHH
Confidence 344457777 666 676655543
No 253
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=24.70 E-value=2.7e+02 Score=22.22 Aligned_cols=57 Identities=11% Similarity=-0.192 Sum_probs=35.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHH-HHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLG-AIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a-~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+++||.|.+..+........+.. +-..|+.+..++. .+.+++...++. ++++|+...
T Consensus 34 ~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~d~~~l~~~i~~-~~~~v~~~~ 91 (331)
T 1pff_A 34 LKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-AVPGNIEKHLKP-NTRIVYFET 91 (331)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-TSTTHHHHTCCT-TEEEEEEES
T ss_pred cCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-CCHHHHHHhhcC-CCeEEEEEC
Confidence 46889888877665554333322 3457888877765 456777777753 567777643
No 254
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=24.68 E-value=91 Score=21.54 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=22.6
Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHcCC
Q psy2835 20 FNAPEWFYSDLGAIYAGGLAKAFLKLGL 47 (305)
Q Consensus 20 ~~~~~~Ty~el~~~~~~~la~~L~~~g~ 47 (305)
..++.++-++... .++++|.+|++.|.
T Consensus 99 ~y~e~~~~g~~~~-~ve~ladYL~~~gy 125 (125)
T 1ypr_A 99 HYPPTVQAGEATK-IVEQLADYLIGVQY 125 (125)
T ss_dssp EECTTSCHHHHHH-HHHHHHHHHHHTTC
T ss_pred EcCCCCCHHHHHH-HHHHHHHHHHHcCC
Confidence 3456788899999 69999999999874
No 255
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=24.66 E-value=3.4e+02 Score=23.37 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=41.7
Q ss_pred eEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 52 SVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 52 ~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
+..+....+..-..+.+++...|..++.+=|...+.+-...++..++++++++..
T Consensus 161 ~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~ 215 (442)
T 3ss7_X 161 YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQD 215 (442)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3566667777777888888888987665555555556777789999999999875
No 256
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=24.44 E-value=70 Score=26.00 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=11.4
Q ss_pred CCCcc-eEechhHHHHHHHHH
Q psy2835 178 GASKP-VMLSHDNITFNAACI 197 (305)
Q Consensus 178 G~pK~-v~~s~~~l~~~~~~~ 197 (305)
|.|-| ++...+.++..+...
T Consensus 206 ~~~~G~~~~~~~~~~~~~~~~ 226 (347)
T 1jg8_A 206 CAPVGSVVVGDRDFIERARKA 226 (347)
T ss_dssp CCSSCEEEEECHHHHHHHHHH
T ss_pred CCCceEEEEcCHHHHHHHHHH
Confidence 45677 455666666554443
No 257
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=24.43 E-value=2.1e+02 Score=23.43 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=45.2
Q ss_pred ccchHHHHHHHHHHHHH---HH-HHcCCCCCCeEEEEecCC-hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGLAK---AF-LKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~---~L-~~~g~~~gd~V~i~~~n~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +...... .+ ...++++|++|+|....+ .-.+.+.+|-...|..++... +.+.. ..++ .++
T Consensus 114 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~---~~~~~-~~~~-~ga 187 (349)
T 4a27_A 114 DMSFSEAAA-FPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA---STFKH-EAIK-DSV 187 (349)
T ss_dssp TSCHHHHHT-SHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE---CGGGH-HHHG-GGS
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC---CHHHH-HHHH-cCC
Confidence 567776653 2222221 23 235799999999998854 455555555433345555544 22333 3344 677
Q ss_pred eEEEEeChHHHHHHHH
Q psy2835 99 NICVVEDDKQLEKILK 114 (305)
Q Consensus 99 ~~v~~~~~~~~~~~~~ 114 (305)
+.++...+...+.+.+
T Consensus 188 ~~~~~~~~~~~~~~~~ 203 (349)
T 4a27_A 188 THLFDRNADYVQEVKR 203 (349)
T ss_dssp SEEEETTSCHHHHHHH
T ss_pred cEEEcCCccHHHHHHH
Confidence 7777633322344443
No 258
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=24.36 E-value=3e+02 Score=22.67 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=28.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC----------CCCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT----------TNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~----------~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+++||.|.+..+....+ .-++...|+.++.++. ....+++...++. ++++|+.
T Consensus 123 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFAN---RKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHH---HHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccch---HHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 45677776665554432 2344455665554433 1356677776665 5555544
No 259
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=24.31 E-value=1.6e+02 Score=24.24 Aligned_cols=55 Identities=9% Similarity=-0.074 Sum_probs=34.9
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC-----CceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS-----DANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~-----~~~~v~~~~ 105 (305)
.++||.|.+-.+.... ..-++...|..+++++. ...++++..++.. ++++|+...
T Consensus 124 ~~~gd~v~~~~~~~~~---~~~~~~~~g~~~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~ 183 (399)
T 3tqx_A 124 LGPEDAIISDELNHAS---IIDGIRLCKAQRYRYKN-NAMGDLEAKLKEADEKGARFKLIATDG 183 (399)
T ss_dssp CCTTCEEEEETTCCHH---HHHHHHSCCSEEEEECT-TCTTHHHHHHHHHHTTTCSSEEEEEES
T ss_pred cCCCCEEEECCcccHH---HHHHHHHcCCceeEeCC-CCHHHHHHHHHhhhccCCCceEEEEeC
Confidence 4577777766554433 33355667777777664 4556777777764 677777765
No 260
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=24.20 E-value=1e+02 Score=22.69 Aligned_cols=39 Identities=10% Similarity=-0.227 Sum_probs=26.0
Q ss_pred HcCCCCCCeEEEEecCChhH--HHHHHHHHHcCCeEEecCC
Q psy2835 44 KLGLERYHSVCIIGFNAPEW--FYSDLGAIYAGGFAAGMYT 82 (305)
Q Consensus 44 ~~g~~~gd~V~i~~~n~~~~--~~~~~a~~~~G~~~v~i~~ 82 (305)
...+.++|+|.++++.+..- +-+...+-..|+.++.|..
T Consensus 72 ~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 72 HKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp TCCCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred cCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 34688999999998876544 3344444456776666654
No 261
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=24.01 E-value=3e+02 Score=22.89 Aligned_cols=61 Identities=5% Similarity=-0.180 Sum_probs=32.5
Q ss_pred EEecCChhHHHH-HHHHHHcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEeChHHHHHHHHHh
Q psy2835 55 IIGFNAPEWFYS-DLGAIYAGGFAAGMYTTNSP--EACLHCLVTSDANICVVEDDKQLEKILKVK 116 (305)
Q Consensus 55 i~~~n~~~~~~~-~~a~~~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 116 (305)
++..++.+.+.. +.++...|-.++..++.+.. ..+...+...+.++..++.. ..+.+++..
T Consensus 85 ~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i 148 (392)
T 3qhx_A 85 RAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA-DLDAVRAAI 148 (392)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT-CHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC-CHHHHHHhh
Confidence 344444444333 33344556666666666642 33445567778888877654 245554443
No 262
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.92 E-value=2.7e+02 Score=21.96 Aligned_cols=73 Identities=11% Similarity=0.027 Sum_probs=45.7
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
++++...+..|+..++.+.+ ...++.++.++ +...+..|.+.|. ...++.-|+...+..--.-...+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~~-~~~~~~~L~~~g~----d~iviaCNTas~~~l~~lr~~~~iP 91 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQF-TWEMTEHLLDLNI----KMLVIACNTATAVVLEEMQKQLPIP 91 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHH-HHHHHHHHHTTTC----SEEEECCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCCEEEecCCCCCCCCCCCHHHHHHH-HHHHHHHHHHCCC----CEEEEeCchhhHHHHHHHHHhCCCC
Confidence 46777888888866664433 25678899995 8888888887765 3566666666532222112234555
Q ss_pred EEec
Q psy2835 77 AAGM 80 (305)
Q Consensus 77 ~v~i 80 (305)
++-+
T Consensus 92 vigi 95 (267)
T 2gzm_A 92 VVGV 95 (267)
T ss_dssp EEES
T ss_pred EEee
Confidence 5543
No 263
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=23.91 E-value=91 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=14.0
Q ss_pred HHcCCCCCCeEEEEecCC
Q psy2835 43 LKLGLERYHSVCIIGFNA 60 (305)
Q Consensus 43 ~~~g~~~gd~V~i~~~n~ 60 (305)
.++|+++||.|.+...+.
T Consensus 32 ~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 32 RTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp HHTTCCTTCEEEEEEETT
T ss_pred HHcCCCCCCEEEEEEECC
Confidence 357999999998876654
No 264
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.64 E-value=1.7e+02 Score=19.60 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=37.2
Q ss_pred eEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC---hHHHHHHHHHhccCCCccEEE
Q psy2835 52 SVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED---DKQLEKILKVKAQCPKLKAIV 126 (305)
Q Consensus 52 ~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~i 126 (305)
+|+++-++....-..--.+...|..+. ...+.++....++...+++|++|- ....+.+..+....+....++
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 6 TVMVVDESRITFLAVKNALEKDGFNVI---WAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGTCEEE---EESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEE
Confidence 566555544333333333334566544 233456666777778888888874 112333444444444444444
No 265
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=23.51 E-value=85 Score=21.73 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=21.9
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHcCC
Q psy2835 21 NAPEWFYSDLGAIYAGGLAKAFLKLGL 47 (305)
Q Consensus 21 ~~~~~Ty~el~~~~~~~la~~L~~~g~ 47 (305)
.++..+-++... .++++|.+|++.|.
T Consensus 102 y~e~~~~g~~~~-~ve~ladYL~~~Gy 127 (127)
T 3d9y_A 102 YPETTLPGEAAK-ITEALADYLVGVGY 127 (127)
T ss_dssp ECTTSCHHHHHH-HHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHH-HHHHHHHHHHHcCC
Confidence 455778899999 69999999998873
No 266
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=23.51 E-value=3.3e+02 Score=22.86 Aligned_cols=55 Identities=16% Similarity=-0.020 Sum_probs=34.2
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhC---CceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTS---DANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~---~~~~v~~~~ 105 (305)
.++||.|.+..+.... ..-++...|+.++.++ ....++++..++.. ++++|+++.
T Consensus 145 ~~~gd~vl~~~~~h~~---~~~~~~~~g~~~~~~~-~~d~~~le~~l~~~~~~~~~~v~~~~ 202 (427)
T 2w8t_A 145 AGKGEYVILDADSHAS---IYDGCQQGNAEIVRFR-HNSVEDLDKRLGRLPKEPAKLVVLEG 202 (427)
T ss_dssp SCTTCEEEEETTCCHH---HHHHHHHSCSEEEEEC-TTCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred cCCCCEEEECCcccHH---HHHHHHHcCCeeEEeC-CCCHHHHHHHHHhccCCCCeEEEEcC
Confidence 3567777665554443 2344556677777665 35677777777664 567777654
No 267
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=23.47 E-value=2.1e+02 Score=24.23 Aligned_cols=53 Identities=9% Similarity=-0.012 Sum_probs=29.4
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~ 103 (305)
+++||.|++..+..... ..++...|+.++.++.. .+.+++...++. ++++|+.
T Consensus 107 ~~~gd~Vi~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 164 (437)
T 3bb8_A 107 LKPGDEVITVAAGFPTT---VNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMI 164 (437)
T ss_dssp CCTTCEEEECSSSCHHH---HHHHHHTTCEEEECCEETTTTEECGGGHHHHCCT-TEEEEEE
T ss_pred CCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEeccCccCCcCHHHHHHhcCC-CCeEEEE
Confidence 66777776655443333 33445567766665432 256666666643 4556555
No 268
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=23.41 E-value=1.3e+02 Score=24.90 Aligned_cols=55 Identities=7% Similarity=-0.011 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q psy2835 46 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-----NSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~v~~~ 104 (305)
++++||.|++..+..... ..++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 92 ~~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~ 151 (391)
T 3dr4_A 92 GIGPGDEVIVPSLTYIAS---ANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPV 151 (391)
T ss_dssp TCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCB
T ss_pred CCCCcCEEEECCCchHHH---HHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC-CceEEEEE
Confidence 456666666655444332 23334556555444322 244555544432 45555543
No 269
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=23.38 E-value=2.5e+02 Score=23.16 Aligned_cols=14 Identities=0% Similarity=-0.076 Sum_probs=8.5
Q ss_pred ceEechhHHHHHHH
Q psy2835 182 PVMLSHDNITFNAA 195 (305)
Q Consensus 182 ~v~~s~~~l~~~~~ 195 (305)
|.+.....+...+.
T Consensus 255 G~~~~~~~~~~~l~ 268 (401)
T 2bwn_A 255 GYIAASARMVDAVR 268 (401)
T ss_dssp EEEEECHHHHHHHH
T ss_pred CEEecCHHHHHHHH
Confidence 76666666655443
No 270
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=23.26 E-value=2e+02 Score=24.21 Aligned_cols=55 Identities=5% Similarity=-0.084 Sum_probs=29.4
Q ss_pred CCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC------CCCHHHHHHHHhh-----CCceEEEEe
Q psy2835 48 ERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT------TNSPEACLHCLVT-----SDANICVVE 104 (305)
Q Consensus 48 ~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~------~~~~~~~~~~l~~-----~~~~~v~~~ 104 (305)
++||.|++..+....+... .+...|+.+++++. ..+.+++...++. .++++|+..
T Consensus 130 ~~gd~Vl~~~p~y~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 195 (428)
T 1iay_A 130 DPGDAFLVPSPYYPAFNRD--LRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp CTTCEEEEESSCCTTHHHH--TTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCeEEEccCCCcchHHH--HHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEc
Confidence 4677777766554433211 11245666655543 2356777777754 256655543
No 271
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=22.98 E-value=1.1e+02 Score=20.91 Aligned_cols=49 Identities=6% Similarity=-0.142 Sum_probs=34.5
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEE
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANIC 101 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 101 (305)
+++++.+.....-++=.|...|...+.+.+....+++..+.++.+.+++
T Consensus 61 lavi~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 61 TVTLYINPQNQLSEYNYILSLKPKRVIFNPGTENEELEEILSENGIEPV 109 (122)
T ss_dssp EEEECSCHHHHGGGHHHHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred EEEEEeCHHHHHHHHHHHHhcCCCEEEECCCCChHHHHHHHHHcCCeEE
Confidence 4455555555555555666777777778888878888888888888766
No 272
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=22.91 E-value=1.7e+02 Score=23.91 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCC--CCCHHHHH---HHHhhCCceEEEEeChHHHHHHHHHh
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT--TNSPEACL---HCLVTSDANICVVEDDKQLEKILKVK 116 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~~~---~~l~~~~~~~v~~~~~~~~~~~~~~~ 116 (305)
++...+..+...+...++.--+++-..|. ..+++ .-++.++. ..+++.+.++||++....-..++.+.
T Consensus 193 ~~~~~~~~v~~H~af~Yfa~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la 265 (313)
T 1toa_A 193 LPAERRVLVTAHDAFGYFSRAYGFEVKGL--QGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALR 265 (313)
T ss_dssp SCGGGCEEEEEESCCHHHHHHHTCEEEEE--ECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHH
T ss_pred CCccCCEEEEECCcHHHHHHHCCCeEEEe--eccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHH
Confidence 34345667778888888877777765442 23333 33566555 45667899999998764333344443
No 273
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=22.88 E-value=3.1e+02 Score=22.34 Aligned_cols=74 Identities=11% Similarity=-0.081 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHHHHH---HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC-eEEecCCCCCHHHHHHHHhhCCce
Q psy2835 24 EWFYSDLGAIYAGGLA---KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG-FAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la---~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.+... . .-++ +.+...++ +|++|+|......-..++.+|- ..|+ .++.++.+ ++-...++..+++
T Consensus 142 ~~~~~~aa~-~-~~~~ta~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~-~~Ga~~Vi~~~~~---~~~~~~~~~~Ga~ 214 (348)
T 2d8a_A 142 SIPPEYATL-Q-EPLGNAVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAK-ASGAYPVIVSEPS---DFRRELAKKVGAD 214 (348)
T ss_dssp TSCHHHHTT-H-HHHHHHHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHH-HTTCCSEEEECSC---HHHHHHHHHHTCS
T ss_pred CCCHHHHHh-h-hHHHHHHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC---HHHHHHHHHhCCC
Confidence 466665542 1 1222 23445578 9999999998444555555544 4687 56655544 2333455667777
Q ss_pred EEEEe
Q psy2835 100 ICVVE 104 (305)
Q Consensus 100 ~v~~~ 104 (305)
.++..
T Consensus 215 ~~~~~ 219 (348)
T 2d8a_A 215 YVINP 219 (348)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 77643
No 274
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=22.84 E-value=1.9e+02 Score=24.42 Aligned_cols=54 Identities=11% Similarity=-0.019 Sum_probs=41.7
Q ss_pred EEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 53 VCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 53 V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
..+....+..-..+.++|...|..++.+=|...+......++..++++++++..
T Consensus 114 ~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~ 167 (398)
T 4d9i_A 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMN 167 (398)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344466677777888888888988776666666667778889999999999875
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=22.84 E-value=1.4e+02 Score=22.77 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=28.6
Q ss_pred CCCCCCeEEEEecCChh--HHHH-HH--HHHHcCCeEEecCCCCCHHHHHHHHhh
Q psy2835 46 GLERYHSVCIIGFNAPE--WFYS-DL--GAIYAGGFAAGMYTTNSPEACLHCLVT 95 (305)
Q Consensus 46 g~~~gd~V~i~~~n~~~--~~~~-~~--a~~~~G~~~v~i~~~~~~~~~~~~l~~ 95 (305)
|+.+|+.++++++|+.- .++- +. ++...|...+.++...+.+++....+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHH
Confidence 78999999999999862 2222 22 332444444444444455555444443
No 276
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=22.73 E-value=87 Score=19.20 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCCCeEEEEec
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGF 58 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~ 58 (305)
.+.+.|.+.|+.+|..|-+.-.
T Consensus 26 ~~~~rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 26 NARQKLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHHHHHTTTCSTTCEEEEEEC
T ss_pred HHHHHHHHCCCCCCCEEEEEEe
Confidence 4667889999999999988743
No 277
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=22.63 E-value=1.5e+02 Score=23.21 Aligned_cols=39 Identities=15% Similarity=-0.045 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
+...+.+.|+.+++.|.++|..+.....+.+.+...|..
T Consensus 211 l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 211 IAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp HHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 445566778999999999999998888888888888874
No 278
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=22.62 E-value=1.3e+02 Score=24.98 Aligned_cols=8 Identities=0% Similarity=0.015 Sum_probs=3.4
Q ss_pred CCceEEEE
Q psy2835 96 SDANICVV 103 (305)
Q Consensus 96 ~~~~~v~~ 103 (305)
.+.+++.+
T Consensus 132 ~g~~~~~v 139 (400)
T 3vax_A 132 RGFEVDFL 139 (400)
T ss_dssp TTCEEEEE
T ss_pred cCCeEEEE
Confidence 34444444
No 279
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=22.61 E-value=3.3e+02 Score=22.58 Aligned_cols=34 Identities=12% Similarity=-0.138 Sum_probs=16.4
Q ss_pred HcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEeC
Q psy2835 72 YAGGFAAGMYTTNSP--EACLHCLVTSDANICVVED 105 (305)
Q Consensus 72 ~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~~ 105 (305)
.-|-.++..++.+.. ..+..+....+.++..++.
T Consensus 102 ~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 137 (398)
T 1gc0_A 102 RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 137 (398)
T ss_dssp CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC
Confidence 345445555555543 1222333555666666654
No 280
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=22.61 E-value=3.1e+02 Score=22.30 Aligned_cols=72 Identities=8% Similarity=-0.025 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHHH--H-HHH-HHcCCCCCCeEEEEecCC-hhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCc
Q psy2835 24 EWFYSDLGAIYAGGL--A-KAF-LKLGLERYHSVCIIGFNA-PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98 (305)
Q Consensus 24 ~~Ty~el~~~~~~~l--a-~~L-~~~g~~~gd~V~i~~~n~-~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~ 98 (305)
.+++.+... +.... | ..| ...++++|++|+|....+ .-..++.+| ...|+.++.+ .+.+.+ ..++..++
T Consensus 122 ~~~~~~aa~-l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a-~~~Ga~Vi~~---~~~~~~-~~~~~lGa 195 (343)
T 3gaz_A 122 ALTMRQASV-LPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIA-LARGARVFAT---ARGSDL-EYVRDLGA 195 (343)
T ss_dssp TSCHHHHHT-SHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEE---ECHHHH-HHHHHHTS
T ss_pred CCCHHHHHH-hhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEE---eCHHHH-HHHHHcCC
Confidence 567777653 22221 2 223 445889999999998544 444444444 4678876665 234444 45677788
Q ss_pred eEE
Q psy2835 99 NIC 101 (305)
Q Consensus 99 ~~v 101 (305)
+.+
T Consensus 196 ~~i 198 (343)
T 3gaz_A 196 TPI 198 (343)
T ss_dssp EEE
T ss_pred CEe
Confidence 873
No 281
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.55 E-value=1.1e+02 Score=21.25 Aligned_cols=64 Identities=13% Similarity=-0.120 Sum_probs=36.8
Q ss_pred HHHHcCCCCCCeEEEEecCChhHHHHHHHHHHc-CCeEEecCCCCCHHHHHHHHhhCCceEEEEeCh
Q psy2835 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTNSPEACLHCLVTSDANICVVEDD 106 (305)
Q Consensus 41 ~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~-G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 106 (305)
.|.+.|+..-|.|.+..++..+...+...+-.. +...+. - .....+-...++..+++.++....
T Consensus 63 ~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~ii-a-r~~~~~~~~~l~~~G~d~vi~p~~ 127 (140)
T 3fwz_A 63 IMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEII-A-RAHYDDEVAYITERGANQVVMGER 127 (140)
T ss_dssp HHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEE-E-EESSHHHHHHHHHTTCSEEEEHHH
T ss_pred HHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEE-E-EECCHHHHHHHHHCCCCEEECchH
Confidence 345567777777777778776555343333333 222221 1 222234456778899998888754
No 282
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=22.50 E-value=1.8e+02 Score=24.72 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=17.3
Q ss_pred CCCCCCcceEec-hhHHHHHHHHHHH
Q psy2835 175 GTEGASKPVMLS-HDNITFNAACIIQ 199 (305)
Q Consensus 175 GtTG~pK~v~~s-~~~l~~~~~~~~~ 199 (305)
|-+|.+-|.++. .+.++..+.....
T Consensus 277 ~~~G~riG~~~~~~~~l~~~l~~~~~ 302 (447)
T 3b46_A 277 AATGWRIGWVLSLNAELLSYAAKAHT 302 (447)
T ss_dssp TCTTSCCEEEECSCHHHHHHHHHHHH
T ss_pred CCcchhhEEEEeCCHHHHHHHHHHHh
Confidence 447777888888 8877776655433
No 283
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=22.40 E-value=1.8e+02 Score=22.19 Aligned_cols=55 Identities=7% Similarity=-0.076 Sum_probs=36.8
Q ss_pred CCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC-CC-----HHHHHHHHhhCCceEEEEeC
Q psy2835 49 RYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT-NS-----PEACLHCLVTSDANICVVED 105 (305)
Q Consensus 49 ~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~-~~-----~~~~~~~l~~~~~~~v~~~~ 105 (305)
+.++++++++ .++..+. --+...|..+..+++. +. .+++...++..+++++++-.
T Consensus 29 ~~eI~~Visn-~~~a~v~-~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 29 PCEVALLITD-KPGAKVV-ERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp SSEEEEEEES-CSSSHHH-HHHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred CcEEEEEEEC-CCCcHHH-HHHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeC
Confidence 4566666664 4443333 3346778887777664 22 35788899999999999875
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=22.35 E-value=1.6e+02 Score=22.33 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=35.8
Q ss_pred cCCCCCCeEEEEecCCh--hHHHHHH--HHHHcCCeEEecCCCCCHHHHHHHHhhCC
Q psy2835 45 LGLERYHSVCIIGFNAP--EWFYSDL--GAIYAGGFAAGMYTTNSPEACLHCLVTSD 97 (305)
Q Consensus 45 ~g~~~gd~V~i~~~n~~--~~~~~~~--a~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 97 (305)
-|+.+|+.+++.++++. ..++..+ .+...|..++.++...+.+++...+...+
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g 74 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFG 74 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcC
Confidence 47899999999999975 3332223 33355666666777777777777666554
No 285
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=22.31 E-value=38 Score=23.07 Aligned_cols=56 Identities=11% Similarity=-0.124 Sum_probs=28.9
Q ss_pred hHHHHHHHhc-ccceeeeccCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecC
Q psy2835 3 AFLKLGLERY-HSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFN 59 (305)
Q Consensus 3 ~~l~~~~~~~-~~~~~~~~~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n 59 (305)
++++...+.. |++.++...+-+..|+++..-....++.++.+.++ +|+.|.++..+
T Consensus 57 ~~l~~L~~~~g~~~~v~v~relTk~~E~~~rgtl~el~~~~~~~~~-kGe~vivv~~~ 113 (115)
T 3ffy_A 57 KTLTQFAEYFGPERQVSVSREISKIHEETVRGTLSELIEHFTATDP-RGEIVIVLAGI 113 (115)
T ss_dssp HHHHHHHHHHCTTCEEEEEEESSSSCEEEEEEEHHHHHHHHHHSCC-CSSEEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEeeeccCCCceEEEEeeHHHHHHHHHhcCC-CCCEEEEEeCC
Confidence 4555555544 46555545443334444332113334555555554 68888887654
No 286
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=22.20 E-value=3.3e+02 Score=22.37 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=7.9
Q ss_pred CCCCcceEechhH
Q psy2835 177 EGASKPVMLSHDN 189 (305)
Q Consensus 177 TG~pK~v~~s~~~ 189 (305)
.|.+-|.++..+.
T Consensus 253 ~G~r~G~~~~~~~ 265 (398)
T 3ele_A 253 PGERIGYVLVPDE 265 (398)
T ss_dssp TTTCCEEEECCTT
T ss_pred ccceeEEEEEcch
Confidence 4555677776665
No 287
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=21.93 E-value=2.4e+02 Score=24.28 Aligned_cols=18 Identities=0% Similarity=-0.130 Sum_probs=11.6
Q ss_pred cceEechhHHHHHHHHHH
Q psy2835 181 KPVMLSHDNITFNAACII 198 (305)
Q Consensus 181 K~v~~s~~~l~~~~~~~~ 198 (305)
=|+++..+.++..+....
T Consensus 271 ~G~l~~~~~l~~~l~~~~ 288 (445)
T 1qgn_A 271 AGCISGPLKLVSEIRNLH 288 (445)
T ss_dssp CEEEEECHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHH
Confidence 577777777766554433
No 288
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=21.84 E-value=2.1e+02 Score=19.91 Aligned_cols=44 Identities=18% Similarity=-0.029 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~ 76 (305)
.+.+.++.++ .. .++.++..|.++|.++.....+...+...|..
T Consensus 39 ~ip~~~l~~~-~~--------~~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~ 82 (141)
T 3ilm_A 39 AMPIEDLVDR-AS--------SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFE 82 (141)
T ss_dssp ECCGGGHHHH-HH--------TTSCTTSEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred EcCHHHHHHH-HH--------hcCCCCCeEEEEECCChHHHHHHHHHHHcCCC
Confidence 4677777663 21 35677788999998887777777777777763
No 289
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=21.66 E-value=1.3e+02 Score=24.16 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=40.3
Q ss_pred eEEEEecCChhHHHHHHHHHHcCCeEEecCCC--CCHHHH---HHHHhhCCceEEEEeChHHHHHHHHHhc
Q psy2835 52 SVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT--NSPEAC---LHCLVTSDANICVVEDDKQLEKILKVKA 117 (305)
Q Consensus 52 ~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~--~~~~~~---~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 117 (305)
+..+...+...++.--|++-..|. ..+++. -++.++ ...+++.+.++||++....-..+..+.+
T Consensus 175 ~~~v~~H~af~Yf~~~yGl~~~~~--~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~ 243 (284)
T 2prs_A 175 KGYFVFHDAYGYFEKQFGLTPLGH--FTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVAR 243 (284)
T ss_dssp CCEEEEESCCHHHHHHHTCCCCEE--EESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTT
T ss_pred CeEEEECccHHHHHHHCCCeEeEe--eccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHH
Confidence 445667778888888888875543 234433 345555 4556778999999987643344444433
No 290
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=21.49 E-value=2e+02 Score=23.27 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=35.2
Q ss_pred HHHcCCCCCC-eEEEEec-CChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 42 FLKLGLERYH-SVCIIGF-NAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 42 L~~~g~~~gd-~V~i~~~-n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
+.+.++++|+ +|+|... ...-...+.+|- ..|+.++.+..+.... ..++..+++.++-
T Consensus 142 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~-~~Ga~vi~~~~~~~~~---~~~~~lGa~~v~~ 201 (330)
T 1tt7_A 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLN-KRGYDVVASTGNREAA---DYLKQLGASEVIS 201 (330)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHH-HHTCCEEEEESSSSTH---HHHHHHTCSEEEE
T ss_pred HHhcCcCCCCceEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHH---HHHHHcCCcEEEE
Confidence 3456889997 9999987 445555555554 4577666555442222 2344567776664
No 291
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=21.48 E-value=2.4e+02 Score=23.26 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEe
Q psy2835 40 KAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVE 104 (305)
Q Consensus 40 ~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~ 104 (305)
+.|.+.++++|++|+|+.....-...+.+|- ..|+.++.++.+-... ..++..+++.++-.
T Consensus 170 ~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak-~~Ga~Vi~~~~~~~~~---~~~~~lGa~~v~~~ 230 (360)
T 1piw_A 170 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVISRSSRKR---EDAMKMGADHYIAT 230 (360)
T ss_dssp HHHHHTTCSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESSSTTH---HHHHHHTCSEEEEG
T ss_pred HHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEcCCHHHH---HHHHHcCCCEEEcC
Confidence 3445578999999999998555555555554 4577766666443322 23445677777654
No 292
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=21.42 E-value=2e+02 Score=23.24 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=36.6
Q ss_pred HHHcCCCCCC-eEEEEecC-ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCceEEEEeC
Q psy2835 42 FLKLGLERYH-SVCIIGFN-APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 42 L~~~g~~~gd-~V~i~~~n-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+.+.++++|+ +|+|.... ..-...+.+| ...|+.++.+..+... ...++..+++.++-..
T Consensus 141 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a-~~~Ga~vi~~~~~~~~---~~~~~~lGa~~~i~~~ 202 (328)
T 1xa0_A 141 LEEHGLTPERGPVLVTGATGGVGSLAVSML-AKRGYTVEASTGKAAE---HDYLRVLGAKEVLARE 202 (328)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHH-HHTTCCEEEEESCTTC---HHHHHHTTCSEEEECC
T ss_pred HhhcCCCCCCceEEEecCCCHHHHHHHHHH-HHCCCEEEEEECCHHH---HHHHHHcCCcEEEecC
Confidence 3456889997 99999874 4455555554 4567776666554222 2234567787776543
No 293
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=21.41 E-value=4.1e+02 Score=23.20 Aligned_cols=81 Identities=12% Similarity=-0.043 Sum_probs=47.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC--CCHHHHHHHHhhCCceE
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT--NSPEACLHCLVTSDANI 100 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~--~~~~~~~~~l~~~~~~~ 100 (305)
-+-+|++......-..+..+.+.| +.++.| +....+..-..+.+++.+.|..++.+-|. .+...+ ..++..++++
T Consensus 158 PTGSFKDRga~~~~~~l~~~~~~~-~g~~~V-v~aSsGNtG~AlA~~a~~~Gi~~~I~~P~~~~s~~k~-~~~~~~GA~v 234 (486)
T 1e5x_A 158 HTGSFKDLGMTVLVSQVNRLRKMK-RPVVGV-GCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQL-VQPIANGAFV 234 (486)
T ss_dssp TTSBTTHHHHHHHHHHHHHHHHTT-CCCCEE-EECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHH-HHHHHTTCEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHcC-CCCeEE-EEcCCCHHHHHHHHHHHHcCCeEEEEECCCCCCHHHH-HHHHhCCCEE
Confidence 367787774321222223333344 223344 34445555555566777888877666554 555444 4677889999
Q ss_pred EEEeCh
Q psy2835 101 CVVEDD 106 (305)
Q Consensus 101 v~~~~~ 106 (305)
+.++..
T Consensus 235 i~v~g~ 240 (486)
T 1e5x_A 235 LSIDTD 240 (486)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 999876
No 294
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=21.33 E-value=3.4e+02 Score=22.14 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=45.8
Q ss_pred ccchHHHHHHHHHH--HH-HHH-HHcCCC------CCCeEEEEe-cCChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHH
Q psy2835 24 EWFYSDLGAIYAGG--LA-KAF-LKLGLE------RYHSVCIIG-FNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 92 (305)
Q Consensus 24 ~~Ty~el~~~~~~~--la-~~L-~~~g~~------~gd~V~i~~-~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~ 92 (305)
.+++.+... +-.. .| ..| ...+++ +|++|+|.. ....-..++.+|- ..|+.++.++.+ .+ -...
T Consensus 116 ~~~~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~-~~Ga~Vi~~~~~--~~-~~~~ 190 (346)
T 3fbg_A 116 NISAEQAVS-LPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAK-AYGLRVITTASR--NE-TIEW 190 (346)
T ss_dssp SSCHHHHTT-SHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEECCS--HH-HHHH
T ss_pred CCCHHHhhh-cchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHH-HcCCEEEEEeCC--HH-HHHH
Confidence 467766543 2211 11 123 245677 899999995 4445555555554 678877776543 33 3344
Q ss_pred HhhCCceEEEEeCh
Q psy2835 93 LVTSDANICVVEDD 106 (305)
Q Consensus 93 l~~~~~~~v~~~~~ 106 (305)
++..+++.++...+
T Consensus 191 ~~~lGa~~vi~~~~ 204 (346)
T 3fbg_A 191 TKKMGADIVLNHKE 204 (346)
T ss_dssp HHHHTCSEEECTTS
T ss_pred HHhcCCcEEEECCc
Confidence 56678887776544
No 295
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=21.23 E-value=3.5e+02 Score=22.37 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=11.1
Q ss_pred ceEechh-HHHHHHHHHH
Q psy2835 182 PVMLSHD-NITFNAACII 198 (305)
Q Consensus 182 ~v~~s~~-~l~~~~~~~~ 198 (305)
|+++..+ .+...+....
T Consensus 216 G~v~~~~~~~~~~l~~~~ 233 (389)
T 3acz_A 216 GVSSAKTAEDIATIKFYR 233 (389)
T ss_dssp EEEEESSHHHHHHHHHHH
T ss_pred EEEEECcHHHHHHHHHHH
Confidence 7777777 7766555443
No 296
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=21.22 E-value=1.5e+02 Score=24.14 Aligned_cols=83 Identities=8% Similarity=-0.007 Sum_probs=47.3
Q ss_pred HHHHHHHHHHc--CCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC--CCHHHH---HHHHhhCCceEEEEeChH
Q psy2835 35 AGGLAKAFLKL--GLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT--NSPEAC---LHCLVTSDANICVVEDDK 107 (305)
Q Consensus 35 ~~~la~~L~~~--g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~--~~~~~~---~~~l~~~~~~~v~~~~~~ 107 (305)
.+.+-..+++. .++...+..+...+...++.--|++-..+ ..++++. -++.++ ...+++.+.++||++...
T Consensus 172 L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~--~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~ 249 (307)
T 3ujp_A 172 LKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIY--MWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTV 249 (307)
T ss_dssp HHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEE--EESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTS
T ss_pred HHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEE--eeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 34444444432 34434567777788877777666665432 2234443 345554 556678899999998764
Q ss_pred HHHHHHHHhccC
Q psy2835 108 QLEKILKVKAQC 119 (305)
Q Consensus 108 ~~~~~~~~~~~~ 119 (305)
.-..+..+.++.
T Consensus 250 ~~k~~~~ia~e~ 261 (307)
T 3ujp_A 250 SDKGQKQVAQAT 261 (307)
T ss_dssp CSHHHHHTTTTT
T ss_pred ChHHHHHHHHHh
Confidence 434444444443
No 297
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=21.19 E-value=4.2e+02 Score=23.22 Aligned_cols=78 Identities=15% Similarity=0.016 Sum_probs=51.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC--eEEecCCCC----CHHHHHHHHhhC
Q psy2835 23 PEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG--FAAGMYTTN----SPEACLHCLVTS 96 (305)
Q Consensus 23 ~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~--~~v~i~~~~----~~~~~~~~l~~~ 96 (305)
..||-.++.++ ....+++. + .+++|++.+.-+.++.+++.-+.+.|. ..+.++..+ ..+....+.+..
T Consensus 188 ~~~~~~~~~~~----~i~~ir~~-~-~~~kvvvalSGGvDSsvla~ll~~~g~~v~av~vd~g~~~~~e~~~v~~~~~~l 261 (503)
T 2ywb_A 188 RDWTPEHVLEE----LLREVRER-A-GKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRAL 261 (503)
T ss_dssp CCCCHHHHHHH----HHHHHHHH-H-TTSEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCSCTTHHHHHHHHHHHT
T ss_pred ccccchhhhHH----HHHhhhhh-c-cCccEEEEecCCcchHHHHHHHHHcCCeEEEEEEeCCCCChHHHHHHHHHHHHh
Confidence 34555554443 33344432 1 236899999999999999888888774 344455543 244566777788
Q ss_pred CceEEEEeCh
Q psy2835 97 DANICVVEDD 106 (305)
Q Consensus 97 ~~~~v~~~~~ 106 (305)
+.++.+.+.+
T Consensus 262 gi~~~vv~~~ 271 (503)
T 2ywb_A 262 GVNLLVVDAK 271 (503)
T ss_dssp TCCEEEEECH
T ss_pred CCCEEEEECc
Confidence 8888888765
No 298
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=21.15 E-value=10 Score=29.38 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.9
Q ss_pred ccCCCCCCcceEechhHHH
Q psy2835 173 TSGTEGASKPVMLSHDNIT 191 (305)
Q Consensus 173 TSGtTG~pK~v~~s~~~l~ 191 (305)
+|+.|| ||||+--++..-
T Consensus 3 ~~~~tg-pkgvi~d~~~~~ 20 (217)
T 2trc_P 3 QATHTG-PKGVINDWRKFK 20 (217)
T ss_dssp SCCSSH-HHHHHHHHHHHH
T ss_pred CCCCCC-cchHHHHHHHHH
Confidence 467777 899988777776
No 299
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=21.13 E-value=3.5e+02 Score=22.56 Aligned_cols=16 Identities=0% Similarity=0.108 Sum_probs=9.4
Q ss_pred cceEech-hHHHHHHHH
Q psy2835 181 KPVMLSH-DNITFNAAC 196 (305)
Q Consensus 181 K~v~~s~-~~l~~~~~~ 196 (305)
=|.+++. +.+...+..
T Consensus 207 ~G~~v~~~~~l~~~l~~ 223 (424)
T 2po3_A 207 GGAVVTDDADLAARIRA 223 (424)
T ss_dssp CEEEEESCHHHHHHHHH
T ss_pred CeEEEeCCHHHHHHHHH
Confidence 3666666 666655544
No 300
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=21.08 E-value=1.5e+02 Score=24.42 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=41.2
Q ss_pred CCeEEEEecCChhHHHHHHHHHHcCCeEEecCCC--CCHHHHH---HHHhhCCceEEEEeChHHHHHHHHHhccC
Q psy2835 50 YHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT--NSPEACL---HCLVTSDANICVVEDDKQLEKILKVKAQC 119 (305)
Q Consensus 50 gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~--~~~~~~~---~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 119 (305)
..+..+...+...++.--|++-..| +..+++. -++.++. ..+++.+.++||++....-..+..+.++.
T Consensus 203 ~~r~~v~~H~af~Yfa~~yGL~~~~--~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~ 275 (321)
T 1xvl_A 203 NQRFLVSCEGAFSYLARDYGMEEIY--MWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQAT 275 (321)
T ss_dssp GGCEEEEEESTTHHHHHHTTCEEEE--EESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTT
T ss_pred cCCEEEEECchHHHHHHHCCCeEEE--eeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCChHHHHHHHHhc
Confidence 3456677777888777777665444 2334333 3555554 45677899999998765434444444333
No 301
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=21.03 E-value=3.5e+02 Score=22.23 Aligned_cols=15 Identities=20% Similarity=0.374 Sum_probs=8.9
Q ss_pred ceEechh-HHHHHHHH
Q psy2835 182 PVMLSHD-NITFNAAC 196 (305)
Q Consensus 182 ~v~~s~~-~l~~~~~~ 196 (305)
|+++..+ .+...+..
T Consensus 209 G~~~~~~~~l~~~l~~ 224 (386)
T 1cs1_A 209 GVVIAKDPDVVTELAW 224 (386)
T ss_dssp EEEEESSHHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHH
Confidence 7777765 56555443
No 302
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=20.97 E-value=1.2e+02 Score=24.04 Aligned_cols=39 Identities=15% Similarity=0.022 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHH-HcCC
Q psy2835 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAI-YAGG 75 (305)
Q Consensus 37 ~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~-~~G~ 75 (305)
.+...+.+.|+.++..|.++|..+.....+.+.+. ..|.
T Consensus 220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~ 259 (285)
T 1uar_A 220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGY 259 (285)
T ss_dssp HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCC
Confidence 45566777789889999999998887777777777 7786
No 303
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=20.97 E-value=3.6e+02 Score=22.64 Aligned_cols=64 Identities=13% Similarity=-0.053 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCCCCeEEEEecCChhHHHHHH--HHHHcCCeEEecCCCCCH--HHHHHHHhhCCceEEEEeC
Q psy2835 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDL--GAIYAGGFAAGMYTTNSP--EACLHCLVTSDANICVVED 105 (305)
Q Consensus 38 la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~--a~~~~G~~~v~i~~~~~~--~~~~~~l~~~~~~~v~~~~ 105 (305)
+...+++.|+. +|..+.|.+.+....+| ||+..|+.++--.|+... ..+.++.++.+.. ++.|+
T Consensus 130 i~~~~~~~~~d---VvV~~lp~gs~~aS~~YA~Aal~ag~~fvN~~P~~~~~~P~~~el~~~~g~p-i~GdD 197 (367)
T 1gr0_A 130 VVQALKEAKVD---VLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIASDPVWAKKFTDARVP-IVGDD 197 (367)
T ss_dssp HHHHHHHTTCS---EEEECCCTTCHHHHHHHHHHHHHHTCEEEECSSCCSTTSHHHHHHHHHHTCE-EEESS
T ss_pred HHHHHHHhCCc---EEEEeeeCCCcCHHHHHHHHHHHcCCceEecCCccccCCHHHHHHHHHcCCC-Eeccc
Confidence 55667788765 66667776655555554 667789999988888765 6888888887765 34443
No 304
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=20.93 E-value=1.7e+02 Score=23.76 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEecCCh-hHHHHHHHHHHcCCe
Q psy2835 36 GGLAKAFLKLGLERYHSVCIIGFNAP-EWFYSDLGAIYAGGF 76 (305)
Q Consensus 36 ~~la~~L~~~g~~~gd~V~i~~~n~~-~~~~~~~a~~~~G~~ 76 (305)
..+...+.+.|+.+++.|.+++..+. ....+.+.+...|..
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~ 138 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHA 138 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCC
Confidence 45778888899999999999998765 555555666667763
No 305
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=20.90 E-value=3.1e+02 Score=22.31 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=10.1
Q ss_pred CCHHHHHHHHhh-CCceEEEEe
Q psy2835 84 NSPEACLHCLVT-SDANICVVE 104 (305)
Q Consensus 84 ~~~~~~~~~l~~-~~~~~v~~~ 104 (305)
.+.+++...+++ -++++|+..
T Consensus 132 ~d~~~l~~~l~~~~~~~~v~~~ 153 (386)
T 2dr1_A 132 VKPEDLDDALRKNPDVEAVTIT 153 (386)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCHHHHHHHHhcCCCCcEEEEE
Confidence 345555555542 244444443
No 306
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=20.84 E-value=3.3e+02 Score=21.90 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHHHHH--HHHHH-cCCCCCCeEEEEecC-ChhHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhhCCce
Q psy2835 24 EWFYSDLGAIYAGGLA--KAFLK-LGLERYHSVCIIGFN-APEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDAN 99 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la--~~L~~-~g~~~gd~V~i~~~n-~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 99 (305)
.+++.+...-...-+. ..+.+ .++++|++|+|.... ..-..++.++. ..|+.++.+.. +.+.+ ..++..+++
T Consensus 112 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~-~~~~~~Ga~ 187 (325)
T 3jyn_A 112 SVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAK-ALGAKLIGTVS--SPEKA-AHAKALGAW 187 (325)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEES--SHHHH-HHHHHHTCS
T ss_pred CCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HCCCEEEEEeC--CHHHH-HHHHHcCCC
Confidence 5777776520111122 22333 478999999999854 44555444444 56887776654 33333 345567787
Q ss_pred EEEEeC
Q psy2835 100 ICVVED 105 (305)
Q Consensus 100 ~v~~~~ 105 (305)
.++...
T Consensus 188 ~~~~~~ 193 (325)
T 3jyn_A 188 ETIDYS 193 (325)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 776543
No 307
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=20.77 E-value=1.4e+02 Score=19.66 Aligned_cols=44 Identities=11% Similarity=-0.091 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 24 ~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
.+.+.++.++ .. +.++.+++.|.+++..+.....+...+...|.
T Consensus 38 ~ip~~~l~~~-~~-------~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~ 81 (110)
T 2k0z_A 38 LISVNDQEKL-AD-------FLSQHKDKKVLLHCRAGRRALDAAKSMHELGY 81 (110)
T ss_dssp EEETTCHHHH-HH-------HHHSCSSSCEEEECSSSHHHHHHHHHHHHTTC
T ss_pred EcCHHHHHHH-HH-------hcccCCCCEEEEEeCCCchHHHHHHHHHHCCC
Confidence 4667777663 32 23567788899999888777766666666664
No 308
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=20.64 E-value=3.2e+02 Score=21.61 Aligned_cols=72 Identities=14% Similarity=-0.010 Sum_probs=45.9
Q ss_pred hHHHHHHHhcccceeeeccC------CccchHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCChhHHHHHHHHHHcCC
Q psy2835 3 AFLKLGLERYHSVCIIGFNA------PEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGG 75 (305)
Q Consensus 3 ~~l~~~~~~~~~~~~~~~~~------~~~Ty~el~~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~ 75 (305)
++++...+..|+..++.+.+ ...++.++.++ +...+..|.+ .|+. ..++.-|+...+..--.--..+.
T Consensus 17 tv~~~i~~~lP~~~~iy~~D~~~~PyG~~s~~~i~~~-~~~~~~~L~~~~g~d----~iViACNTas~~~l~~lr~~~~i 91 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQY-TWELTNYLLENHHIK----MLVIACNTATAIALDDIQRSVGI 91 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEECGGGCCCSSSCHHHHHHH-HHHHHHHHHHHSCCS----EEEECCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCCCCcEEEeccCCCCCCCCCCHHHHHHH-HHHHHHHHHhhcCCC----EEEEeCchhhHHHHHHHHHHCCC
Confidence 46777888888866664332 35788999996 8889999998 7753 56666666654322111123455
Q ss_pred eEEe
Q psy2835 76 FAAG 79 (305)
Q Consensus 76 ~~v~ 79 (305)
.++-
T Consensus 92 PVig 95 (272)
T 1zuw_A 92 PVVG 95 (272)
T ss_dssp CEEE
T ss_pred CEEc
Confidence 5554
No 309
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=20.52 E-value=1.5e+02 Score=24.39 Aligned_cols=41 Identities=10% Similarity=-0.045 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChh-HHHHHHHHHHcCC
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPE-WFYSDLGAIYAGG 75 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~-~~~~~~a~~~~G~ 75 (305)
.+.+++.|.++||.++++|.++-..... ..-+.|-+-..|.
T Consensus 98 ~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh 139 (327)
T 3utn_X 98 KKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGH 139 (327)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCC
Confidence 4678999999999999999998665432 3334444445564
No 310
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=20.52 E-value=1.5e+02 Score=25.29 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCe-EEecCCC
Q psy2835 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF-AAGMYTT 83 (305)
Q Consensus 35 ~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~-~v~i~~~ 83 (305)
.+.+.+.+.+.|+.++..|.++|..+.....+.+++...|.. +..++-+
T Consensus 188 ~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg 237 (423)
T 2wlr_A 188 DEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGG 237 (423)
T ss_dssp HHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCC
Confidence 345667777889988889999999888888888888888973 4444443
No 311
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=20.37 E-value=3.5e+02 Score=21.94 Aligned_cols=53 Identities=8% Similarity=-0.100 Sum_probs=29.3
Q ss_pred CCCCCeEEEEecCChhHHHHHHHHHHcCCeEE--ecCCCCCHHHHHHHHhhCCceEEEE
Q psy2835 47 LERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA--GMYTTNSPEACLHCLVTSDANICVV 103 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v--~i~~~~~~~~~~~~l~~~~~~~v~~ 103 (305)
.++||.|++..+....+. .++...|+.++ ++++..+.+++...++.- +++++.
T Consensus 102 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~i 156 (377)
T 3fdb_A 102 TPAQSKVIVPTPAYPPFF---HLLSATQREGIFIDATGGINLHDVEKGFQAG-ARSILL 156 (377)
T ss_dssp SCTTCCEEEEESCCTHHH---HHHHHHTCCEEEEECTTSCCHHHHHHHHHTT-CCEEEE
T ss_pred cCCCCEEEEcCCCcHhHH---HHHHHcCCEEEEccCCCCCCHHHHHHHhccC-CCEEEE
Confidence 356777777666554432 23334455444 444446677777777653 444444
No 312
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=20.29 E-value=3.7e+02 Score=22.25 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=17.0
Q ss_pred CCCCCCcceEechhHHHHHHHHHHH
Q psy2835 175 GTEGASKPVMLSHDNITFNAACIIQ 199 (305)
Q Consensus 175 GtTG~pK~v~~s~~~l~~~~~~~~~ 199 (305)
|..|.+-|.++..+.+...+.....
T Consensus 236 ~~~G~r~G~~~~~~~~~~~l~~~~~ 260 (411)
T 2o0r_A 236 NCTGWKIGWACGPAELIAGVRAAKQ 260 (411)
T ss_dssp TCTTTCEEEEECCHHHHHHHHHHHH
T ss_pred CCccceEEEEeeCHHHHHHHHHHHh
Confidence 4466677888888887776655443
No 313
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=20.23 E-value=1.4e+02 Score=24.81 Aligned_cols=59 Identities=3% Similarity=-0.144 Sum_probs=29.5
Q ss_pred CCCCCeEEEEecCChhHHHH--HHHHHHcCCeEEecCC----CCCHHHHHHHHhhCCceEEEEeC
Q psy2835 47 LERYHSVCIIGFNAPEWFYS--DLGAIYAGGFAAGMYT----TNSPEACLHCLVTSDANICVVED 105 (305)
Q Consensus 47 ~~~gd~V~i~~~n~~~~~~~--~~a~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~v~~~~ 105 (305)
+++||.|++..+........ .......+..+++++. ..+.+++...++..++++|++..
T Consensus 108 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 172 (417)
T 3n0l_A 108 INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGA 172 (417)
T ss_dssp SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECC
Confidence 46788887776654332221 1122223444444432 25678888888766777777643
No 314
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A*
Probab=20.14 E-value=3.6e+02 Score=22.03 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=44.0
Q ss_pred cccceeeec-cCCccchHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCChhHHHHHHHHHHcCCeEEecCCCCCHHHHH
Q psy2835 12 YHSVCIIGF-NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACL 90 (305)
Q Consensus 12 ~~~~~~~~~-~~~~~Ty~el~~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~~~~~~~~~ 90 (305)
.||...++- .+...+|.++.+ .+..+-..|.+.|+.. -+-..+..+.. +++||.+..+-++..
T Consensus 131 ~PD~lvfDLDP~~~~~f~~v~~-aA~~~r~~L~~lGL~~--f~KTSGgkGlH-------------V~vPl~~~~~~~~vr 194 (309)
T 2fao_A 131 RPDRFVLDLDPDPALPWKRMLE-ATQLSLTLLDELGLRA--FLKTSGGKGMH-------------LLVPLERRHGWDEVK 194 (309)
T ss_dssp SCSEEEEEEEECTTSCHHHHHH-HHHHHHHHHHHHTCCC--EEEECSSSSEE-------------EEEECCSCSCHHHHH
T ss_pred CCCEEEEECCCCcCCCHHHHHH-HHHHHHHHHHHcCCce--eeEccCCCeeE-------------EEEEcCCCCCHHHHH
Confidence 477777764 466799999999 7888888888999853 12223333333 678888887766654
Q ss_pred H
Q psy2835 91 H 91 (305)
Q Consensus 91 ~ 91 (305)
.
T Consensus 195 ~ 195 (309)
T 2fao_A 195 D 195 (309)
T ss_dssp H
T ss_pred H
Confidence 3
No 315
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=20.12 E-value=3.5e+02 Score=22.04 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=12.9
Q ss_pred CCCCcceEechhHHHHHHHHH
Q psy2835 177 EGASKPVMLSHDNITFNAACI 197 (305)
Q Consensus 177 TG~pK~v~~s~~~l~~~~~~~ 197 (305)
.|.+-|.++..+.+...+...
T Consensus 227 ~G~r~G~~~~~~~~~~~~~~~ 247 (381)
T 1v2d_A 227 TGYRVGWIVGPKEFMPRLAGM 247 (381)
T ss_dssp GGGCCEEEECCTTTHHHHHHH
T ss_pred cccceEEEEeCHHHHHHHHHH
Confidence 455567777777666655443
Done!