RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2835
(305 letters)
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 386 bits (993), Expect = e-131
Identities = 149/267 (55%), Positives = 197/267 (73%), Gaps = 3/267 (1%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
AKAFLKLGLER+HSV I+GFN+PEWF + +GAI+AGG A G+YTTNSPEAC + TS+A
Sbjct: 22 AKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIYTTNSPEACQYVAETSEA 81
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYEG--KPDKPGVISWDELMELGRAAPDESLD 156
NI VV++ KQL+KIL ++ Q P LKAI+QY K +P + SW E MELGR+ PDE LD
Sbjct: 82 NILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLYSWKEFMELGRSIPDEQLD 141
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL-ESAALSVISFLP 215
++E+ N+CCTL+YTSGT G K VMLSHDNIT+ A +++ L SV+S+LP
Sbjct: 142 AIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLP 201
Query: 216 LSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLM 275
LSHIAAQ +DI+ ++V ++FA +ALKG+L+ TL EVRP F+ VPRVWEKI E++
Sbjct: 202 LSHIAAQILDIWLPISVGGCVYFAQPDALKGTLVKTLREVRPTAFMGVPRVWEKIQERMK 261
Query: 276 AVGKQTTGVKRWIANYAKSTSLQHYMA 302
AVG ++TG+KR IA++AK L+ +
Sbjct: 262 AVGAKSTGLKRKIASWAKGVGLETNLK 288
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 178 bits (455), Expect = 9e-53
Identities = 79/266 (29%), Positives = 115/266 (43%), Gaps = 62/266 (23%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
+++L LA + LG++ V I+ N PEW +DL + AG +Y T+SP
Sbjct: 8 WAELAER-VRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSP 66
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
E + L S A + VE DKP
Sbjct: 67 EEVAYILNDSGARVVFVE----------------------------DKP----------- 87
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
++ TL+YTSGT G K VML+H N+ AA +++ L S
Sbjct: 88 ------------------DDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPL-SP 128
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRV 266
V+SFLPL+H+ Q + Y ++ A + FA+ +L+ L EVRP VF AVPRV
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAES---PETLLEDLREVRPTVFFAVPRV 185
Query: 267 WEKIHEKLMAVGKQTTGVKRWIANYA 292
WEKI+ + A +KR + +A
Sbjct: 186 WEKIYAGIEAKVAAAGPLKRKLFRWA 211
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 174 bits (444), Expect = 3e-50
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 14/280 (5%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L LA L LG+ V I N PEW +DL + G + +Y+T++P
Sbjct: 48 YRELYER-VRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTP 106
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV----QYEGKPDKPGVISWDE 142
E + L S++ + VE+ + L+ +L V CPK+ ++ + + +
Sbjct: 107 EQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVE-AKALVLEV 165
Query: 143 LMELGRAAPDESLDRVLETIAT---NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ 199
+ G + + IA ++ T++YTSGT G K VML+H N+ A I +
Sbjct: 166 FPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDE 225
Query: 200 YFKLESAALSVISFLPLSHIAAQTVDIYSVMTV-AATLWFADKNALKGSLINTLLEVRPH 258
V+SFLPL+HI + + + L+ D L L EVRP
Sbjct: 226 VLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLE----DLKEVRPT 281
Query: 259 VFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSLQ 298
V + VPRVWEK+++ +M + V+R + +A + +
Sbjct: 282 VMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK 321
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 127 bits (322), Expect = 3e-33
Identities = 64/264 (24%), Positives = 107/264 (40%), Gaps = 38/264 (14%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+ LGL+ + I N PEW ++ +Y T EA + L ++
Sbjct: 18 IGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEAIEYILNETE 77
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
+I + K V S++EL ELG+
Sbjct: 78 ISIVFCDAVK-----------------------------VYSFEELEELGKKNKVPPTPP 108
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALSVISFLPL 216
E + T++YTSGT G K VML+H NI A I + + IS+LPL
Sbjct: 109 KPEDL-----ATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPL 163
Query: 217 SHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA 276
+HI + V+ + + + + + L + E++P VF+ VPRV ++I++ ++A
Sbjct: 164 AHIFERVVENV-CLYIGGRIGYYSGDTRG--LKGDIKELKPTVFVGVPRVLDRIYKGILA 220
Query: 277 VGKQTTGVKRWIANYAKSTSLQHY 300
G+KR + N+A + L
Sbjct: 221 KVNAKGGLKRTLFNFAYNYKLAAL 244
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 120 bits (303), Expect = 3e-31
Identities = 61/261 (23%), Positives = 109/261 (41%), Gaps = 12/261 (4%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L A LA A LG+ V I+ N+PEW + L + AG + +
Sbjct: 2 YRELDE-RANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
E + L S+A + + DD+ L K+L+V + L A++ + ++ + L
Sbjct: 61 ERLAYILEDSEAKVLIT-DDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGA 119
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
P +D ++ ++YTSGT G K VML+H N+ AA + + F L +
Sbjct: 120 SAEPPAPPVDP-------DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL-TP 171
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLL-EVRPHVFLAVPR 265
V+ LPL + +I+ + TL K L + + L+ + + V VP
Sbjct: 172 GDRVLLLLPLHFDGS-VWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPT 230
Query: 266 VWEKIHEKLMAVGKQTTGVKR 286
+ + + + ++
Sbjct: 231 LLRLLLKAPEEKKYDLSSLRL 251
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 114 bits (288), Expect = 8e-29
Identities = 71/241 (29%), Positives = 101/241 (41%), Gaps = 17/241 (7%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+A A LGLE + I+ N EW +DL AG + +Y T + E + L SD
Sbjct: 19 IAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTAETIRYVLEHSD 78
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
A V K L+ +KA P+ + WD+L+
Sbjct: 79 AKALFV--GK-LDDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLAAT-EPLQGRPLP 134
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
E +A T+VYTSGT G K VMLS F A I+ L ++S+LPL+
Sbjct: 135 EPEDLA-----TIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPND-RLLSYLPLA 188
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEK----IHEK 273
HIA + + + A ++F + + L RP VF +VPR+W K I K
Sbjct: 189 HIAERVIVEGGSLYSGAEVFFVES---LDTFAADLQRARPTVFFSVPRLWTKFQQGILAK 245
Query: 274 L 274
L
Sbjct: 246 L 246
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 101 bits (253), Expect = 5e-24
Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 10/243 (4%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L A LA A LG++ V I+ N+PE+ + L A+ AG A + +P
Sbjct: 41 YRELDR-RANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTP 99
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
+ L + A + + + + V P + ++ D+ I+ + L
Sbjct: 100 RELAYILNDAGAKVLIT-SAEFAALLEAVAEALPVVLVVLLVGDADDRLP-ITLEALAAE 157
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE-S 205
G ++ + +A L+YTSGT G K V+L+H N+ NAA I +
Sbjct: 158 GPGPDADARPVDPDDLAF-----LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLT 212
Query: 206 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGS-LINTLLEVRPHVFLAVP 264
V+S+LPL HI V + + + TL ++ + + + V VP
Sbjct: 213 PDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVP 272
Query: 265 RVW 267
Sbjct: 273 TFL 275
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 96.7 bits (241), Expect = 3e-22
Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 39/271 (14%)
Query: 41 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEA----CLHCLVTS 96
++ G+ + V + N PEW D + +Y T P+A H V
Sbjct: 94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEV-- 151
Query: 97 DANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK----PDKPG-----VISWDELMELG 147
A I V L +L ++ P ++ IV G P P ++++ +L+ G
Sbjct: 152 -AAIFCVPQ--TLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQG 208
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 207
R++P E +AT + YTSGT G K V+L+H N+ N A K +
Sbjct: 209 RSSPQPFRPPKPEDVAT-----ICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSD 263
Query: 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLW------FADKNALKGSLINTLLEVRPHVFL 261
+ IS+LPL+H IY + L F + LK L++ L +RP +F
Sbjct: 264 VH-ISYLPLAH-------IYERVNQIVMLHYGVAVGFYQGDNLK--LMDDLAALRPTIFC 313
Query: 262 AVPRVWEKIHEKLMAVGKQTTGVKRWIANYA 292
+VPR++ +I++ + K++ G+K + N A
Sbjct: 314 SVPRLYNRIYDGITNAVKESGGLKERLFNAA 344
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 91.6 bits (227), Expect = 1e-20
Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 31/255 (12%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
L + +G++ I G N+PEW S G + +Y T A + S+
Sbjct: 92 LGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSE 151
Query: 98 ANICVVEDDKQLEKILKVKAQCPK----LKAIVQYEG-------KPDKPGVI--SWDELM 144
+I VE+ +KI ++ CP +K +V + G + + G++ +WDE +
Sbjct: 152 VSIVFVEE----KKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFL 207
Query: 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 204
+LG + L ++ CT++YTSGT G K VM+S+++I A +I+ K
Sbjct: 208 KLGEGKQYD-----LPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 205 SAALSV----ISFLPLSHIAAQTVDIYSVMTVAAT-LWFADKNALKGSLINTLLEVRPHV 259
+AAL+V +S+LPL+HI + ++ + AA W D LI L E++P +
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL----LIEDLGELKPTI 318
Query: 260 FLAVPRVWEKIHEKL 274
F AVPRV ++++ L
Sbjct: 319 FCAVPRVLDRVYSGL 333
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 86.4 bits (214), Expect = 9e-19
Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 31/271 (11%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+ A G E V I G N P+W + +Y T P A + + ++
Sbjct: 89 IGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAE 148
Query: 98 ANICVVEDDKQLEKILKVKAQCPK-LKAIVQY----EGKPDKPGVI-----SWDELMELG 147
+ V+D K+++++L+ + K LKAIV + E + DK I SW + + +G
Sbjct: 149 IDFVFVQD-KKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMG 207
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACII------QYF 201
+ P E+ + CT++YTSGT G K V+L+H+ + A + + F
Sbjct: 208 KENPSETN-----PPKPLDICTIMYTSGTSGDPKGVVLTHEAV---ATFVRGVDLFMEQF 259
Query: 202 KLESAALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWF-ADKNALKGSLINTLLEVRPHV 259
+ + V +SFLPL+HI + ++ Y A+ ++ D NAL+ + L+E++P +
Sbjct: 260 EDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALR----DDLMELKPTL 315
Query: 260 FLAVPRVWEKIHEKLMAVGKQTTGVKRWIAN 290
VPRV+E+IHE + ++ +R I N
Sbjct: 316 LAGVPRVFERIHEGIQKALQELNPRRRLIFN 346
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 83.0 bits (205), Expect = 1e-17
Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 26/275 (9%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
+ A G+ I G N PEW + G +Y T A + ++
Sbjct: 90 IGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAE 149
Query: 98 ANICVVEDDKQLEKILKVKAQCPK-LKAIVQY-------EGKPDKPGV--ISWDELMELG 147
+I V++ K + IL +C LK IV + + + ++ GV SW+E +G
Sbjct: 150 VSIAFVQESK-ISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMG 208
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 207
SLD L + CT++YTSGT G K V+L++ I K+
Sbjct: 209 ------SLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRV 262
Query: 208 L----SVISFLPLSHIAAQTVDIYSVMTVAAT-LWFADKNALKGSLINTLLEVRPHVFLA 262
S S+LPL+H+ Q ++ Y + A+ W D L+ + ++P +F
Sbjct: 263 ATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIR----YLMEDVQALKPTIFCG 318
Query: 263 VPRVWEKIHEKLMAVGKQTTGVKRWIANYAKSTSL 297
VPRV+++I+ +M +++ + ++A + L
Sbjct: 319 VPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKL 353
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 80.6 bits (200), Expect = 6e-17
Identities = 60/278 (21%), Positives = 114/278 (41%), Gaps = 26/278 (9%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ F+ Y++L LA A LG+++ V + +N+ E+ + G
Sbjct: 24 AVYFDGRRTTYAELDE-RVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIG-- 80
Query: 77 AAGMYTTN---SPEACLHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKP 132
A ++ N PE + L ++ + +V+ + +L + Q P ++ ++ P
Sbjct: 81 -AVLHPINIRLKPEEIAYILNDAEDRVVLVDSE--FVPLLAAILPQLPTVRTVIVEGDGP 137
Query: 133 DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITF 192
P E EL AA D I N+ ++YTSGT G K V+LSH N+
Sbjct: 138 AAPLAPEVGEYEELLAAASDTFDF---PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFL 194
Query: 193 NAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGS----- 247
++ + + KL S + +P+ H+ A + ++M A K +
Sbjct: 195 HSLAVCAWLKL-SRDDVYLVIVPMFHVHAWGLPYLALMAGA-------KQVIPRRFDPEN 246
Query: 248 LINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVK 285
L++ + R F AVP +W+ + + A + ++
Sbjct: 247 LLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLR 284
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 76.5 bits (189), Expect = 1e-15
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 10/190 (5%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LAK KLGL++ V +I N+ E+ LG + AGG + + +P+ H L S
Sbjct: 23 LAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYTPDELAHQLKISK 82
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
+ + D +L+K+ + + + I+ + PD I LG
Sbjct: 83 PKL-IFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPL 141
Query: 158 VL--ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS--VISF 213
+ + A L+Y+SGT G K VMLSH NI N + + K + + V++F
Sbjct: 142 IDGKDDTAA-----LLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTF 196
Query: 214 LPLSHIAAQT 223
LP H T
Sbjct: 197 LPFYHAYGLT 206
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 72.5 bits (179), Expect = 2e-14
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
IS+++ + G A ++ + +A L YT GT G K ML+H N+ N
Sbjct: 103 AISFEDALASG-APLPLPVELSPDDLAV-----LQYTGGTTGVPKGAMLTHRNLVANVQQ 156
Query: 197 IIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLW----FADKNALKGSLINT 251
I + K L ++ LPL HI TV++ + + AT F N LK
Sbjct: 157 IAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLK-----E 211
Query: 252 LLEVRPHVFLAVP 264
+ R +F VP
Sbjct: 212 IKRYRFTIFPGVP 224
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 69.8 bits (172), Expect = 3e-13
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 120 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGA 179
P+L+ ++ + G PG++++DEL+ LGRA D L T+ ++ + YTSGT G
Sbjct: 155 PELRRVI-FLGDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGF 213
Query: 180 SKPVMLSHDNITFNA 194
K L+H NI N
Sbjct: 214 PKGATLTHRNILNNG 228
Score = 29.0 bits (66), Expect = 3.8
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEW 63
W Y + LAK L LG+E+ V I N PEW
Sbjct: 44 WTYREFNEE-VDALAKGLLALGIEKGDRVGIWAPNVPEW 81
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 66.1 bits (162), Expect = 4e-12
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 10/170 (5%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A A LG+ + V I N+P W + LGA+ AG + T + + + L DA
Sbjct: 44 AAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDA 103
Query: 99 NICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMELGRAAPDESL 155
V L + P L+ +V E P + ++ + + G + +
Sbjct: 104 KALFVLGL-FLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAG-DPAERAP 161
Query: 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
+ + +A +++TSGT G K ML+H + NAA +Y L
Sbjct: 162 EVDPDDVAD-----ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE 206
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 63.3 bits (154), Expect = 3e-11
Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 16/197 (8%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y+ L LA LGL R V I E + GA AGG +
Sbjct: 28 YAALSE-RVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY----EGKPDKPG--VISW 140
E H L + + +V ++L+ + C L+ ++ PG SW
Sbjct: 87 EQVAHILADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASW 145
Query: 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
+L+ LG A P + +A ++YTSG+ G K V+LSH N+ A + Y
Sbjct: 146 PKLLALGDADP--PHPVIDSDMAA-----ILYTSGSTGRPKGVVLSHRNLVAGAQSVATY 198
Query: 201 FKLESAALSVISFLPLS 217
+ +++ LPLS
Sbjct: 199 LENRPDD-RLLAVLPLS 214
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/225 (24%), Positives = 81/225 (36%), Gaps = 37/225 (16%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDL-----GAI--------------YA----- 73
LA+ L LG++ V I N EW + GAI YA
Sbjct: 58 LARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSG 117
Query: 74 --GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGK 131
A + T+ A L L+ A + Q + + P+L+ +V
Sbjct: 118 VRWVICADAFKTSDYHAMLQELLPGLA-------EGQPGAL--ACERLPELRGVVSL-AP 167
Query: 132 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 191
PG ++W EL G E+L ++ ++ + YTSGT G K LSH NI
Sbjct: 168 APPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNIL 227
Query: 192 FNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATL 236
N + + L + +PL H + MTV A L
Sbjct: 228 NNGYFVAESLGLTEHDRLCVP-VPLYHCFGMVLANLGCMTVGACL 271
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 61.5 bits (149), Expect = 1e-10
Identities = 48/156 (30%), Positives = 69/156 (44%), Gaps = 11/156 (7%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
AKA LGL + V ++ N E+ LG + AGG +G T +
Sbjct: 68 FAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAG 127
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
A + +V +D K+ + L IV G+ G ++W EL+E A D S
Sbjct: 128 AKL-IVTNDTNYGKVKGLG-----LPVIVL--GEEKIEGAVNWKELLEAADRAGDTS--- 176
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 193
E I + C L ++SGT G SK VML+H N+ N
Sbjct: 177 DNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVAN 212
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 59.9 bits (146), Expect = 4e-10
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
++YTSGT G K V+L+H + F A + L + +++ LPL HI AQ +Y
Sbjct: 84 AAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDV-LLTPLPLFHINAQAYSVY 142
Query: 228 SVMTVAATLWFADK 241
+ + V ATL +
Sbjct: 143 AALLVGATLVLLPR 156
Score = 30.6 bits (70), Expect = 0.92
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81
+ Y++L LA L LG+ V ++ N PE+ + G A +
Sbjct: 1 GRRYTYAELAER-VNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPIN 59
Query: 82 TTNSPEACLHCLVTSDANICVVE 104
T E H L S A + VV+
Sbjct: 60 TALRGEELAHILDHSGARLIVVD 82
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 59.7 bits (145), Expect = 5e-10
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 19/215 (8%)
Query: 35 AGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 93
+ +A+A L GL+ +V ++ N P + + LG G A + T + LHC
Sbjct: 13 SNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSGSLLHCF 72
Query: 94 VTSDANICVVEDDKQ--LEKILKVKAQCPKLKAI---VQYEGKPDKP-GVISWDELMELG 147
A + V + + +E+IL P L+A+ V Y P GVIS ++
Sbjct: 73 RCCGARVLVADPELLEAVEEIL------PALRAMGVRVFYLSHTSPPEGVISLLAKVD-- 124
Query: 148 RAAPDESLDRVLETIAT-NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
AA DE + L + + +YTSGT G K +SH + + +A
Sbjct: 125 -AASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVL--QCSGMLSLCGVTA 181
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241
V + LPL H + + I + + ATL K
Sbjct: 182 DDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPK 216
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 59.7 bits (145), Expect = 5e-10
Identities = 62/262 (23%), Positives = 110/262 (41%), Gaps = 40/262 (15%)
Query: 34 YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCL 93
+A GL LG + V I EW + G +Y + EA H L
Sbjct: 119 FASGLVA----LGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSL 174
Query: 94 VTSDAN--ICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----------VISWD 141
++ IC D KQL+K++ + +Q +K ++ + + V S+
Sbjct: 175 NETEVTTVIC---DSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFS 231
Query: 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
E+ +LG+ P + IA ++YTSG+ G K VM++H NI A ++
Sbjct: 232 EVEKLGKENPVDPDLPSPNDIAV-----IMYTSGSTGLPKGVMMTHGNIVATVAGVMTVV 286
Query: 202 -KLESAALSVISFLPLSHI---AAQTVDIYSVMTVAATLWFAD-------KNALKGSLIN 250
KL + +++LPL+HI AA++V + V A + + N +K
Sbjct: 287 PKLGKNDV-YLAYLPLAHILELAAESV----MAAVGAAIGYGSPLTLTDTSNKIKKGTKG 341
Query: 251 TLLEVRPHVFLAVPRVWEKIHE 272
++P + AVP + +++ +
Sbjct: 342 DASALKPTLMTAVPAILDRVRD 363
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 58.8 bits (143), Expect = 8e-10
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVD 225
+ ++YTSG+ G K VMLSH N+T A I QY +L +++ LP S +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDR-ILAVLPFSFDYGLSQ- 60
Query: 226 IYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270
+ + V TL + A ++ L + R F VP W ++
Sbjct: 61 LLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQL 105
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 56.9 bits (137), Expect = 4e-09
Identities = 70/275 (25%), Positives = 109/275 (39%), Gaps = 28/275 (10%)
Query: 11 RYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGA 70
Y + F Y++L A+ A A A L+ G + SV + N P+ + GA
Sbjct: 33 DYGPRPALEFRDRPITYTELEAM-AETAAAALLRAGYGKDASVALYLGNTPDHPINFFGA 91
Query: 71 IYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQL----EKILKVKAQCPKL---- 122
+ AG + + A H L S A + + D L K L+ K +L
Sbjct: 92 LKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLE-KGLLDRLIVCE 150
Query: 123 -----KAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTE 177
K P P ++++ + ++ G AAP E + ++ L YT GT
Sbjct: 151 DDNWGKVGTPQAPIPADPRIVTYADFVK-GAAAPAE-----WPAVTPDDVALLQYTGGTT 204
Query: 178 GASKPVMLSHDNITFNAACIIQYFKLESAALS-----VISFLPLSHIAAQTVDIYSVMTV 232
G K ML+H N+T +A I + S A VI LPL HI A TV + +
Sbjct: 205 GLPKGAMLTHGNLT-SAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRR 263
Query: 233 AATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
+ + + ++ + E R VF VP +W
Sbjct: 264 GDLISLHQRFDVA-AVFRDIEEKRATVFPGVPTMW 297
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 56.1 bits (136), Expect = 8e-09
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 25/253 (9%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTN---SPEACLHCL 93
LA A LG++ V + +N + L +A G A ++T N SPE + +
Sbjct: 38 LANALESLGVKPGDRVATLAWNT----HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYII 93
Query: 94 VTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQY----EGKPDKPGVISWDELMELGR 148
++ + V+DD +L + + P +KA+V Y + P V +++EL+E
Sbjct: 94 NHAEDKVIFVDDD--FLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLE--E 149
Query: 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN--AACIIQYFKLESA 206
+P+ + E N L YTSGT G K V+ SH ++ + A+ + L +
Sbjct: 150 ESPEYEWPELDE----NTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSES 205
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRV 266
+V+ +P+ H+ A + + M V A L + SL++ + E + V VP +
Sbjct: 206 D-TVLPVVPMFHVNAWGLPYAATM-VGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTI 263
Query: 267 WEKIHEKLMAVGK 279
W + L A GK
Sbjct: 264 WLGLLNYLEANGK 276
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 55.7 bits (135), Expect = 1e-08
Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 33/209 (15%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LA G + V ++ N+ E+ L + AG +P
Sbjct: 45 LAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPA---------- 94
Query: 98 ANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPD 152
E KQ++ + KL ++ V+ D + A D
Sbjct: 95 ------EIAKQVKDSGAKLAITTSELAEKLASLAL-------EPVVLLDSADDGSAAIDD 141
Query: 153 ESLDRVLET----IATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAAL 208
E I ++ L Y+SGT G SK VML+H N+ N A ++
Sbjct: 142 LLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDRE 201
Query: 209 SVI-SFLPLSHIAAQTVDIYSVMTVAATL 236
V LP+ HI TV + +++ + AT+
Sbjct: 202 DVTLCVLPMFHIYGLTVILLALLRLGATV 230
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 55.5 bits (134), Expect = 1e-08
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 97 DANICVVEDDKQ-LEKILKVKAQCPKL-KAIVQY----EGKPDKPGVISWDELMELGRAA 150
D ++ +E DK+ LEKI +K + KL +I+ + + K + + D
Sbjct: 252 DISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDP-------- 303
Query: 151 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA-----CIIQYFKLES 205
+ ++VYTSGT G K VMLS+ N+ I + + ++
Sbjct: 304 --------------DFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKT 349
Query: 206 AALSVISFLPLSHIAAQTVDIYSVM-TVAATLWFADKNALKGSLINTLLEVRPHVFLAVP 264
+S+LP+SHI + + S M +W D N + N+ + ++ VP
Sbjct: 350 H----LSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNS----KGNILAGVP 401
Query: 265 RVWEKIHEKLMAVGKQTTGVKRWIAN 290
+V+ +I+ +M +KR++
Sbjct: 402 KVFNRIYTNIMTEINNLPPLKRFLVK 427
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 54.6 bits (132), Expect = 2e-08
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 51/248 (20%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
A +LG+ER + V +I + PE+ + GAI G + T +P+ + L S
Sbjct: 43 WGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSR 102
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
A + V+ ++ E + + P L+ ++ G PG +S+ +L + AA +
Sbjct: 103 ARVLVISEEL-WEVLKPALQKDPHLRHVIVVGGAG--PGALSYAQL--IATAAEE----- 152
Query: 158 VLETIAT--NECCTLVYTSGTEGASKPVMLSH-------------------DNITFNAAC 196
LE AT ++ +Y+SG+ G K V+ H D++ F+AA
Sbjct: 153 -LEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLGITEDDVVFSAAK 211
Query: 197 IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVR 256
+ + L + +Y ++V AT + ++ T+ +
Sbjct: 212 LFFAYGLGNG-------------------LYFPLSVGATTVLMPERPTPDAVFATIERYK 252
Query: 257 PHVFLAVP 264
P VF VP
Sbjct: 253 PTVFFGVP 260
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 54.5 bits (132), Expect = 2e-08
Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 6/162 (3%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++L A A A G+ + V ++ N PE+ + LG G + T
Sbjct: 65 YAELNAR-ANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA-VVALLNTQQR 122
Query: 87 EACL-HCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELME 145
A L H L DA +V ++ +E + +A + G +++L
Sbjct: 123 GAVLAHSLNLVDAKHLIVGEE-LVEAFEEARAD-LARPPRLWVAGGDTLDDPEGYEDLAA 180
Query: 146 LGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
AP + + + +YTSGT G K ++SH
Sbjct: 181 AAAGAPTTNPA-SRSGVTAKDTAFYIYTSGTTGLPKAAVMSH 221
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 54.6 bits (132), Expect = 2e-08
Identities = 56/222 (25%), Positives = 78/222 (35%), Gaps = 21/222 (9%)
Query: 8 GLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSD 67
L+RY + Y L +AF LGL +V ++ N PE +
Sbjct: 21 ALKRYPDRPALVLGDTRLTYGQLADR-ISRYIQAFEALGLGTGDAVALLSLNRPEVLMA- 78
Query: 68 LGAIYAGGFAAGMYTTNSPEACL--HCLVTSDANI--CVVEDDKQLEKILKVKAQCPKLK 123
+GA G T P L H V DA I +V+ +E+ L + A+ P LK
Sbjct: 79 IGAAQLAGLR---RTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLK 135
Query: 124 AIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
++ PD L+ L + L YT GT G K V
Sbjct: 136 HVLTLGPVPDGVD------LLAAAAKFGPAPLVAA---ALPPDIAGLAYTGGTTGKPKGV 186
Query: 184 MLSHDNITFNAACIIQYFKLE-SAALSVISFLPLSHIAAQTV 224
M +H +I A IQ + E A + PLSH
Sbjct: 187 MGTHRSIATMAQ--IQLAEWEWPADPRFLMCTPLSHAGGAFF 226
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 53.0 bits (128), Expect = 7e-08
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSGT G K V+L+H N+ NA +++ ++ +A+ ++ LPL H+ ++
Sbjct: 93 IIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW-TASDVLLHALPLHHVHGLFNALHCP 151
Query: 230 MTVAATLWFADK-NALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA 276
+ A++ F + + + + L R VF+ VP I+ +L+
Sbjct: 152 LWAGASVEFLPRFDPQERDALRLLP--RITVFMGVP----TIYTRLLE 193
Score = 29.9 bits (68), Expect = 1.6
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 94
+G LAKA L LGL V ++ + E+ L AGG A + + + L
Sbjct: 21 SGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPAAELAYILS 80
Query: 95 TSDANICV 102
S ++ V
Sbjct: 81 DSQPSLLV 88
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 53.0 bits (128), Expect = 7e-08
Identities = 63/258 (24%), Positives = 99/258 (38%), Gaps = 28/258 (10%)
Query: 20 FNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFA-A 78
F W Y++L A +A A L LGL++ V +G N SD A+ A A
Sbjct: 32 FGDRSWTYAELDAA-VNRVAAALLDLGLKKGDRVAALGHN------SDAYALLWLACARA 84
Query: 79 GM------YTTNSPEACLHCLVTSDANICVVEDD--KQLEKILKVKAQCPKLKAIVQYEG 130
G + E + L S A +V+ E L L + G
Sbjct: 85 GAVHVPVNFMLTGEELA-YILDHSGARAFLVDPALAPTAEAALA-LLPVDTLILSLVLGG 142
Query: 131 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 190
+ G + + + E G A + +A ++ ++YTSGTE K ML+H +
Sbjct: 143 REAPGGWLDFADWAEAGSVAEPD------VELADDDLAQILYTSGTESLPKGAMLTHRAL 196
Query: 191 TFN-AACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249
+CI+ + + + + + LPL H A V + + V AT D ++
Sbjct: 197 IAEYVSCIVA-GDMSADDIPLHA-LPLYHCAQLDVFLGPYLYVGATNVILDAPDP-ELIL 253
Query: 250 NTLLEVRPHVFLAVPRVW 267
T+ R F A P VW
Sbjct: 254 RTIEAERITSFFAPPTVW 271
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 52.5 bits (127), Expect = 7e-08
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 220
++YTSGT G K VML+H N+ NA + L + +++ PL H A
Sbjct: 4 ALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLA-APLYHAA 55
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 52.5 bits (127), Expect = 8e-08
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
+ YTSGT G K ML+H N+ N I + L + + +PL H+ + +
Sbjct: 5 ALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL-TEGDRTLVPVPLFHVFGLVLGVL 63
Query: 228 SVMTVAATLWFADK-NALKGSLINTLLEVRPHVFLAVP 264
+ +T ATL +K + G+ + + R VP
Sbjct: 64 ASLTAGATLVLMEKFDP--GAALRLIERERITALHGVP 99
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 50.4 bits (121), Expect = 7e-07
Identities = 73/309 (23%), Positives = 114/309 (36%), Gaps = 65/309 (21%)
Query: 8 GLERYHSVCIIGFNAPEWF-YSDL-GAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFY 65
G ER V FN + Y++L I G + +LGL + +V I EW
Sbjct: 106 GKERTMEVTH--FNETRYITYAELWERIVNFG--RGLAELGLTKGSNVAIYEETRWEWLA 161
Query: 66 SDLGAIYAGGFAAGMYTTNSPEACLHCL--VTSDANICVVEDDKQLEKILKVKA--QCP- 120
S G AA +Y +A + L A +C ++ L +++K
Sbjct: 162 SIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTI 221
Query: 121 ----KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATN--ECCTLVYTS 174
L A V EG +++W +++ G +A I N + ++YTS
Sbjct: 222 IYLDSLPASVDTEGCR----LVAWTDVVAKGHSA----GSHHPLNIPENNDDLALIMYTS 273
Query: 175 GTEGASKPVMLSHDNITFNAACIIQYF-----KLESAALSVISFLPLSHIAAQTVDIYSV 229
GT G K VM +H ++T + E + S+LPL+HI V ++
Sbjct: 274 GTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDE-TYCSYLPLAHIMEFGVT--NI 330
Query: 230 MTVAATLWFADKNALKGSLI-----NTLL-----------EVRPHVFLAVPRVWEKI--- 270
+G+LI TL E RP + VPR+++ I
Sbjct: 331 FL------------ARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKA 378
Query: 271 -HEKLMAVG 278
KL VG
Sbjct: 379 VEAKLPPVG 387
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 49.9 bits (120), Expect = 7e-07
Identities = 60/252 (23%), Positives = 96/252 (38%), Gaps = 33/252 (13%)
Query: 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 94
+A+A L LGL + I+ N+ E L A+YAG A + S L+
Sbjct: 35 VRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS-------LL 87
Query: 95 TSD-------ANIC-----VVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
+ D ++ ED + L A V I++
Sbjct: 88 SKDFAKLRHIFDLLTPGAVFAEDGAAFARAL---AALGLAGVPVVAVRGAPGGPAIAFAA 144
Query: 143 LMEL-GRAAPDESLDRVL-ETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
L+ AA D + V +T+A ++TSG+ G K V+ +H + N A I Q
Sbjct: 145 LLATPPTAAVDAAFAAVGPDTVAK-----YLFTSGSTGLPKAVINTHRMLCANQAMIAQC 199
Query: 201 FKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINT---LLEVR 256
+ + V+ +LP +H + V+ TL+ D + G T L EV
Sbjct: 200 WPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVS 259
Query: 257 PHVFLAVPRVWE 268
P V+ VP+ +E
Sbjct: 260 PTVYFNVPKGFE 271
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 48.5 bits (116), Expect = 2e-06
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 17/239 (7%)
Query: 37 GLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM---YTTNSPE-ACL-H 91
LA+A L LGL+ V I+ N+ E L A+ AG AA + Y+ S + A L H
Sbjct: 92 ALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKH 151
Query: 92 CLVTSDANICVVEDDKQLEKILK-VKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA 150
+ + + L + + V G + I++ +L
Sbjct: 152 LFDLVKPRVVFAQSGAPFARALAALDLLDVTV---VHVTGPGEGIASIAFADLAA---TP 205
Query: 151 PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF-KLESAALS 209
P ++ + I + ++TSG+ G K V+ + + N A Q +
Sbjct: 206 PTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPP 265
Query: 210 V-ISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSL---INTLLEVRPHVFLAVP 264
V + ++P +H + ++ TL+ D L G I L E+ P V+ VP
Sbjct: 266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVP 324
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 48.1 bits (115), Expect = 2e-06
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
++YTSGT G K V+LSH N+ NA + Q L + ++S LPL H+ +
Sbjct: 3 AFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDV-LLSVLPLFHVVGGGSGLL 61
Query: 228 SVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
+ T+ + S + + + R V VP ++
Sbjct: 62 GALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLY 101
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 48.3 bits (116), Expect = 2e-06
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
YTSG+ GA K VM++H N+ N I + F L+ +S+LPL H
Sbjct: 155 YTSGSTGAPKGVMVTHGNLLANLRAIARAFGLD-PDDVGVSWLPLYH 200
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 47.3 bits (113), Expect = 5e-06
Identities = 45/203 (22%), Positives = 70/203 (34%), Gaps = 20/203 (9%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A LG+ V + N PE ++ G A G A + PE L + A
Sbjct: 72 ANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLLEPEQIAELLRAAGA 130
Query: 99 NICVV---EDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAA---- 150
+ V + +K+ +V A P+L+ +V+ + PG + +A
Sbjct: 131 KVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARIL 190
Query: 151 ---------PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
P + L I ++ +T GT G K +H N NA
Sbjct: 191 DFDAELARQPGDRLFSG-RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL 249
Query: 202 KLESAALSVISFLPLSHIAAQTV 224
L +V LPL H+ A V
Sbjct: 250 GLGPGD-TVFCGLPLFHVNALLV 271
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 46.8 bits (111), Expect = 9e-06
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 36/183 (19%)
Query: 74 GGFAAGMYTTN-----SPEACLHCLVTSDANICVVEDD--KQLEKIL---KVKA------ 117
G AG+ N +P H L+ S A++ VV D+ +++++ VK
Sbjct: 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGL 154
Query: 118 ----QCPK---LKAIVQYEGK--PDK--PGVISWDELMELGRAAPDESLDRVLETIATNE 166
PK + +V+Y K P+ G I + E + LGR +L I ++
Sbjct: 155 GDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQ-----IEPDD 209
Query: 167 CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF----KLESAALSVISFLPLSHIAAQ 222
L YT GT G +K ML+H N+ N Q+ KLE VI+ LPL HI A
Sbjct: 210 IAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFAL 269
Query: 223 TVD 225
T +
Sbjct: 270 TAN 272
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 46.3 bits (110), Expect = 1e-05
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 14/187 (7%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LA A + G+ V I+ N E+ S L A G A + +P +
Sbjct: 55 LAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCG 114
Query: 98 ANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 156
A++ V E L + V+ P L +V G D V+ +++L+ A +
Sbjct: 115 AHVVVTEA--ALAPVATAVRDIVPLLSTVVVAGGSSDD-SVLGYEDLL----AEAGPAHA 167
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFL-- 214
V I + ++YTSGT G K +L+H N+T A ++ + S + F+
Sbjct: 168 PV--DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADIN--SDVGFVGV 223
Query: 215 PLSHIAA 221
PL HIA
Sbjct: 224 PLFHIAG 230
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 46.4 bits (111), Expect = 1e-05
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L + A +LG+E+ V I PE +++ LGA+ G ++
Sbjct: 76 YKEL-KELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFME 134
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDELME 145
EA L S+A + ++ LE+ K P LK ++ E + PG + ++ LME
Sbjct: 135 EAVRDRLEDSEAKV-LITTPALLER--KPADDLPSLKHVLLVGEDVEEGPGTLDFNALME 191
Query: 146 LGRAAPDESLDRVLETIATN--ECCTLVYTSGTEGASKPVMLSHD 188
A DE + T+ + L YTSG+ G K V+ H+
Sbjct: 192 ---QASDE-----FDIEWTDREDGAILHYTSGSTGKPKGVLHVHN 228
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 46.1 bits (110), Expect = 1e-05
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
PG + W+ L + A + D ++ ++YTSGT G K L+H N+ NA
Sbjct: 191 PGTVPWETL--VDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANA 248
Query: 195 ACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLL 253
A + L V++ LP+ H T+ + +++ L + LI +
Sbjct: 249 AQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDID--LILDAM 306
Query: 254 EVRPHVFL-AVPRVWEKIHEKLMAVGKQTTGVK 285
+ P +L VP ++EKI E G +GV+
Sbjct: 307 KKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVR 339
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 46.1 bits (110), Expect = 1e-05
Identities = 39/175 (22%), Positives = 60/175 (34%), Gaps = 7/175 (4%)
Query: 22 APEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81
+ Y + LA A KLG+ + V ++ N P + G AG +
Sbjct: 27 DRRYTYRETYDR-CRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLN 85
Query: 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG--VIS 139
T + L S+A + V D + L + A K I+ E P
Sbjct: 86 TRLDADDIAFILNHSEAKVLFV-DQEFLSLAEEALALLST-KEIIDTEIIVISPAAEDSE 143
Query: 140 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
+ +L + L + +L YTSGT G K V+ +H NA
Sbjct: 144 EGDYEDLLAGGDPDPLPIPP--DDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNA 196
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 46.0 bits (109), Expect = 2e-05
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
P + + + + GR + + L+ IA L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVPFKQALRQGRGLSLKPVPVGLDDIAV-----LQYTGGTTGLAKGAMLTHGNLVANM 236
Query: 195 ----ACIIQYFK-----LESAALSVISFLPLSHIAAQTVDIYSVM 230
AC+ Q ++ +I+ LPL HI A T + +M
Sbjct: 237 LQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMM 281
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 45.3 bits (108), Expect = 2e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 143 LMELGRAAPD--ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
L+E AAPD E++ R + +A ++YTSGT G SK MLSH N+ NA ++ Y
Sbjct: 137 LLEAAAAAPDDFETVPRGADDLAA-----ILYTSGTTGRSKGAMLSHGNLLSNALTLVDY 191
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 44.9 bits (107), Expect = 3e-05
Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 83 TNSPEACLHCLVTSDANI-CVVEDDKQLEKILKVK---AQCPKLKAIVQYEGKPDKPGVI 138
T S A + A I V+ K LEK LK K + P+ ++ E K
Sbjct: 698 TASEAALKSAI--EQAQIKTVITSRKFLEK-LKNKGFDLELPENVKVIYLEDLKAKIS-- 752
Query: 139 SWDELMELGRA--APDESLDR-VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
D+L L A P L R T ++ T++++SG+EG K VMLSH NI N
Sbjct: 753 KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIE 812
Query: 196 CIIQYFKLESAALSVISFLPLSH 218
I F L + ++S LP H
Sbjct: 813 QISDVFNLRNDD-VILSSLPFFH 834
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 44.7 bits (106), Expect = 3e-05
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 46/190 (24%)
Query: 29 DLGAIY--------AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80
+ GA Y A LA L G+E + F P W + IY G
Sbjct: 45 NHGASYTYSALDHAASRLANWLLAKGIE---PGDRVAFQLPGW--CEFTIIYLACLKVGA 99
Query: 81 YTTNSPEACLHC-------LVTSDANIC--VVEDDKQLEKILKVKAQCPKLKAIVQYEGK 131
+ + + + + + ++ IL ++ Q P+L+ IV
Sbjct: 100 VSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGV--- 156
Query: 132 PDKPGVISWDELMELGRAAPDESLDRVLE---------TIATNECCTLVYTSGTEGASKP 182
DK L A SL +++ T +E +++TSGTEG K
Sbjct: 157 -DK-----------LAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKG 204
Query: 183 VMLSHDNITF 192
VML+H+NI
Sbjct: 205 VMLTHNNILA 214
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 44.6 bits (106), Expect = 4e-05
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 132 PDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 191
GV++W E + G A P + ++ L YTSGT G K M +H +
Sbjct: 164 LAPGGVVAWKEALAAGLAPPPHTAGP-------DDLAVLPYTSGTTGVPKGCMHTHRTVM 216
Query: 192 FNAACIIQYFKL--ESAALSVISFLPLSHI 219
NA + + ES L+V LPL H+
Sbjct: 217 ANAVGSVLWSNSTPESVVLAV---LPLFHV 243
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 44.7 bits (106), Expect = 4e-05
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 131 KPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 190
K P IS+ + GR + V + + L YT GT G +K ML+H N+
Sbjct: 177 KYHLPDAISFRSALHKGR-----RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNM 231
Query: 191 TFN--AACIIQYFKLESAALSVISFLPLSHIAAQTVD 225
N A L V++ LPL HI A TV+
Sbjct: 232 LANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVN 268
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 44.5 bits (106), Expect = 5e-05
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 125 IVQYEGKPDKPGVISWDELME-LGRAAPDESLDRV-LETIATNECCTLVYTSGTEGASKP 182
+V G + L+ AA D + V +TIA ++TSG+ G K
Sbjct: 172 VVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAK-----FLFTSGSTGLPKA 226
Query: 183 VMLSHDNITFNAACIIQYFK-LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241
V+ +H + N + Q F L ++ +LP +H ++ V+ TL+ D
Sbjct: 227 VINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDG 286
Query: 242 NALKGSLINT---LLEVRPHVFLAVPRVWE 268
G T L E+ P V+ VP+ WE
Sbjct: 287 KPTPGGFDETLRNLREISPTVYFNVPKGWE 316
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 44.1 bits (105), Expect = 5e-05
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIA 220
++ L+YTSGT G K VM +H+ + ++ L + ++ PL+HI
Sbjct: 93 DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPS-PLAHIT 147
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 43.8 bits (104), Expect = 6e-05
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYS 228
+++TSGT G K V L+H N+ +A I + KL + + ++ +PL HI V + +
Sbjct: 7 ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDRCLNVMPLFHIHGLIVSLLA 64
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 43.9 bits (104), Expect = 6e-05
Identities = 44/204 (21%), Positives = 72/204 (35%), Gaps = 17/204 (8%)
Query: 39 AKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDA 98
A F LG+ + V + N PE+ + G G + E L S A
Sbjct: 51 ANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQA 110
Query: 99 NICVVEDD--KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLD 156
++ V +I + A + + P GV S+ +L +
Sbjct: 111 SLLVTSAQFYPMYRQIQQEDATPLR-HICLTRVALPADDGVSSFTQL--KAQQPATLCYA 167
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS----VIS 212
L T T E +++TSGT K V+++H N+ F Y+ AL ++
Sbjct: 168 PPLSTDDTAE---ILFTSGTTSRPKGVVITHYNLRFAG-----YYSAWQCALRDDDVYLT 219
Query: 213 FLPLSHIAAQTVDIYSVMTVAATL 236
+P HI Q + + AT
Sbjct: 220 VMPAFHIDCQCTAAMAAFSAGATF 243
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 44.0 bits (104), Expect = 6e-05
Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 25 WFYSDLGAI---YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMY 81
W + +LG++ A L+ A GL+R V +I PEW+ ++ I G
Sbjct: 42 WSFRELGSLSRKAANVLSGA---CGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGT 98
Query: 82 TTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL--KAIVQYEGKPDKPGVIS 139
+ + L+ L S A C+V D+ + + ++CP L K +V +
Sbjct: 99 IQLTAKDILYRLQASKAK-CIVTSDELAPAVDSIASECPSLKTKLLVSEHSRD------G 151
Query: 140 WDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
W EL + A E ++T + E + +TSGT G K SH
Sbjct: 152 WLNFKELLKEASTEH--TCVKT-KSQEPMAIYFTSGTTGFPKMAEHSH 196
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 43.6 bits (104), Expect = 8e-05
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSG+ G K VM+ H + A + + + L +A V+ F S A+ +I+
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGL-TAGDRVLQFASFSFDASVW-EIFPP 155
Query: 230 MTVAATLWFADKNALK--GSLINTLLEVRPHVFLAVPRVWE 268
+ ATL A L+ +L L E R V VP +
Sbjct: 156 LLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLR 196
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 43.0 bits (102), Expect = 1e-04
Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 52/227 (22%)
Query: 15 VCII-GFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA 73
C+I G + Y+D+ + + +A KLG+ + V ++ N PE+ + LGA
Sbjct: 40 PCLIDGATGRVYTYADVELL-SRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98
Query: 74 GGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEK-----ILKVKAQCPKLKAIVQY 128
G TT +P T A I KQ + I+ KLK + +
Sbjct: 99 GAVT----TTANP------FYTP-AEIA-----KQAKASGAKLIITQSCYVDKLKGLAED 142
Query: 129 EGKP----DKP--GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKP 182
+G D P G + + EL + A + L V I+ ++ L Y+SGT G K
Sbjct: 143 DGVTVVTIDDPPEGCLHFSELTQ----ADENELPEV--EISPDDVVALPYSSGTTGLPKG 196
Query: 183 VMLSHDN-ITFNAACIIQ---------YFKLESAALSVISFLPLSHI 219
VML+H +T + Q YF + L V LP+ HI
Sbjct: 197 VMLTHKGLVT----SVAQQVDGENPNLYFHSDDVILCV---LPMFHI 236
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 42.8 bits (101), Expect = 1e-04
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
P + +++ + G P + + +A L YT GT G +K ML+H N+ N
Sbjct: 182 PQAVKFNDALAKGAGQPVTEANPQADDVAV-----LQYTGGTTGVAKGAMLTHRNLVANM 236
Query: 195 ACIIQYF--KLESAALSVISFLPLSHIAAQTVDIYSVM 230
L +I+ LPL HI A T ++M
Sbjct: 237 LQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMM 274
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 42.9 bits (102), Expect = 1e-04
Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 23/165 (13%)
Query: 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN---SPEACLH 91
A LA + GL V I N E+ + LGA A A N + +
Sbjct: 38 ANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR---AVPVNVNYRYVEDELRY 94
Query: 92 CLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE---GKPDKPGVISWDELMELGR 148
L SDA + +V + + ++ +V + PKL+ +V E G PG + +++ + G
Sbjct: 95 LLDDSDA-VALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGS 153
Query: 149 AAPD---ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNI 190
D S D + L+YT GT G K VM ++I
Sbjct: 154 PERDFGERSPDDLY----------LLYTGGTTGMPKGVMWRQEDI 188
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 42.2 bits (100), Expect = 2e-04
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 169 TLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
+++TSG+EG K V+LSH N+ N I L + ++ LPL H
Sbjct: 149 VILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTED-VLLGALPLFH 197
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 24/102 (23%)
Query: 173 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH----IAAQTVDIYS 228
TSG+ G+ K V ++H N+ NA + + + ++S+LPL H + TV
Sbjct: 160 TSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVP--- 216
Query: 229 VMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKI 270
M A L++V P FL P +W ++
Sbjct: 217 -MYFGA----------------ELVKVTPMDFLRDPLLWAEL 241
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
+ YTSGT G K M +H + AA + L ++ + +FLPL H+A + +
Sbjct: 89 IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLL-AFLPLFHVAGMQGSMNAP 147
Query: 230 MTVAATL 236
+ ATL
Sbjct: 148 IYTGATL 154
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 41.9 bits (99), Expect = 3e-04
Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSG+ G K V+++H ++ A + + + L+ V+ F LS A+ +I+
Sbjct: 125 VIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDD-RVLQFASLSFDASVE-EIFGA 182
Query: 230 MTVAATLWFADKNALKGSLINTLLEVRPH---VFLAVPRVWE 268
+ ATL ++ + + H V P +
Sbjct: 183 LLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLA 224
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 41.6 bits (98), Expect = 4e-04
Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 25/241 (10%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYA-GGFAAGMYTTNS---PEACLHCL 93
LA+A LG+E V + +N Y L A Y G A +T N PE + +
Sbjct: 52 LAQALAALGVEPGDRVGTLAWNG----YRHLEAYYGVSGSGAVCHTINPRLFPEQIAY-I 106
Query: 94 VTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG----VISWDELMELGRA 149
V + V+ D L + + QCP +K V P ++ ++ L+
Sbjct: 107 VNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVG---- 162
Query: 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA--ACIIQYFKLESAA 207
+ D N+ +L YTSGT G K + SH + +A A + L SA
Sbjct: 163 --AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGL-SAR 219
Query: 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLA-VPRV 266
+V+ +P+ H+ A + YS A L L G + L+E F A VP V
Sbjct: 220 DAVLPVVPMFHVNAWGLP-YSAPLTGAKLVLPGP-DLDGKSLYELIEAERVTFSAGVPTV 277
Query: 267 W 267
W
Sbjct: 278 W 278
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 41.4 bits (98), Expect = 4e-04
Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 36/132 (27%)
Query: 156 DRVLETIATNECCTLV----------YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
+R+ + + LV +TSG+ G K V +SH N+ +++ F L
Sbjct: 78 ERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE 137
Query: 206 AA-----------LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKG--SLINTL 252
LSV D++ + ATL+ K + +L L
Sbjct: 138 GDVFSNQAPFSFDLSVF-------------DLFPALASGATLYVIPKEQIADPLALFEFL 184
Query: 253 LEVRPHVFLAVP 264
E V+++VP
Sbjct: 185 KEHGLTVWVSVP 196
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 41.3 bits (97), Expect = 4e-04
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
S D + GR S ++ IAT L++TSGT G K V + N +A
Sbjct: 89 DSLDRIEAAGRYETSLSASFNMDQIAT-----LMFTSGTTGKPKAVPHTFRNHYASAVGS 143
Query: 198 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNA 243
+ ++S LPL HI+ ++ ++ + ATL DK
Sbjct: 144 KENLGFTEDDNWLLS-LPLYHISGLSI-LFRWLIEGATLRIVDKFN 187
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 41.1 bits (97), Expect = 5e-04
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 10/164 (6%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
E Y DL LA A LG + V I N+PE + L G A +
Sbjct: 40 ELTYGDL-RREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPG 98
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
S EA + ++ DD K A A++ + G+ + +
Sbjct: 99 LSAEAVADRIADLGPK-VLIADDGTFRNG-KEIALLEDADAVLSSVVVVPRLGLWYDEAV 156
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
+ E L ++ L+YTSGT G K ++ SH
Sbjct: 157 EKASEKFEFEPLPA-------DDPLFLLYTSGTTGKPKGIVHSH 193
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 40.0 bits (94), Expect = 0.001
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 17/108 (15%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA 194
PG + +++ + G + V + ++ L YT GT G SK L H NI N
Sbjct: 179 PGHVRFNDALAEGARQ---TFKPV--KLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANV 233
Query: 195 ACIIQYFKLESA--------ALSVISFLPLSHIAAQTVDIYSVMTVAA 234
+ + L+ A L+ + LPL HI A TV ++ +
Sbjct: 234 LQMEAW--LQPAFEKKPRPDQLNFVCALPLYHIFALTVC--GLLGMRT 277
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 39.7 bits (93), Expect = 0.001
Identities = 39/202 (19%), Positives = 59/202 (29%), Gaps = 41/202 (20%)
Query: 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84
W + +L Y+ +A F G V + N E+ LG G A + +
Sbjct: 4 WTFRELNE-YSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNL 62
Query: 85 SPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELM 144
E+ LHC+ S A + L +P
Sbjct: 63 RLESLLHCITVSKAKALIFNLLDPLLT------------------QSSTEPPSQ------ 98
Query: 145 ELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE 204
D + L +YTSGT G K ++ H AA F +
Sbjct: 99 ------DDVNFRDKL---------FYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMR 143
Query: 205 SAALSVISFLPLSHIAAQTVDI 226
+ LPL H A + +
Sbjct: 144 PEDVVYDC-LPLYHSAGGIMGV 164
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 39.1 bits (92), Expect = 0.002
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 219
T+++TSG+ G K V+ + N +A + L ++S LPL H+
Sbjct: 80 ATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLS-LPLFHV 130
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 39.4 bits (92), Expect = 0.002
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 37/186 (19%)
Query: 102 VVEDDKQLEKILKVKAQCPKLKAIVQYEGKP-DKPG--------VISWDELMELGRAA-- 150
+V D + E++ ++ +CP ++A+V D V S++ L++ GR+
Sbjct: 115 IVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVY 173
Query: 151 --PDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA-A 207
P+ + ET A C Y++GT GA K V+ SH + +Q L + +
Sbjct: 174 DWPE-----LDETTAAAIC----YSTGTTGAPKGVVYSH------RSLYLQSLSLRTTDS 218
Query: 208 LSV---ISFL---PLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFL 261
L+V SFL P+ H+ + V + + M+ L F + +L + P V
Sbjct: 219 LAVTHGESFLCCVPIYHVLSWGVPLAAFMS-GTPLVFPGPDLSAPTLAKIIATAMPRVAH 277
Query: 262 AVPRVW 267
VP +W
Sbjct: 278 GVPTLW 283
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 39.6 bits (93), Expect = 0.002
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 37/113 (32%)
Query: 88 ACLHCLVTS---DANICVVEDDK-QLEKILKVKAQCPKLKAIVQY-EGKPDKPGVISWDE 142
A L L+ + I +ED + Q+ K+K +V + PD P VI
Sbjct: 743 ARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVYFCNRDPDDPAVI---- 798
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
++TSG+EG K V+LSH N+ N A
Sbjct: 799 ----------------------------LFTSGSEGTPKGVVLSHRNLLANRA 823
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 39.1 bits (91), Expect = 0.002
Identities = 51/243 (20%), Positives = 95/243 (39%), Gaps = 41/243 (16%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
L A +LG++R V ++ + ++ + LGAI AG + T + + + L S
Sbjct: 43 LGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSR 102
Query: 98 ANICVVEDDKQLEKILK-VKAQCPKLKAIVQYEGKPDKPGVISWDELM----ELGRAAPD 152
A + V +L ++K + P L+ V G + EL+ E + A
Sbjct: 103 ARVVFVS--GELLPVIKAALGKSPHLEHRVVVGRPE--AGEVQLAELLATESEQFKPAAT 158
Query: 153 ESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVIS 212
++ ++ +Y+SG+ G K V+ +H N + A E A + +
Sbjct: 159 QA----------DDPAFWLYSSGSTGMPKGVVHTHSNPYWTA---------ELYARNTLG 199
Query: 213 F----LPLSHIAAQTVDIYSV-------MTVAATLWFADKNALKGSLINTLLEVRPHVFL 261
+ S AA+ Y + M+V AT + ++ + L +P +F
Sbjct: 200 IREDDVVFS--AAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFY 257
Query: 262 AVP 264
VP
Sbjct: 258 GVP 260
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 39.1 bits (92), Expect = 0.002
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
Y++ A +A A A LG+++ V ++ N PE+ + L G AA + TT
Sbjct: 3 RLSYAEFNA-WANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTT 61
Query: 84 NSPEACLHCLVTSDANICVVE 104
E HC+ SDA +V+
Sbjct: 62 QRGEVLAHCINVSDARAVIVD 82
Score = 33.8 bits (78), Expect = 0.10
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVI-SFLPLSHIAAQTVDI 226
+YTSGT G K ++SH A L V+ LPL H A TV
Sbjct: 84 AFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLL--KPDDVLYLCLPLYHSNALTVGW 141
Query: 227 YSVMTVAATL 236
S + A+L
Sbjct: 142 SSALAAGASL 151
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 38.6 bits (90), Expect = 0.003
Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 26/206 (12%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
LA K L + + + G P + LG+I +G H + D
Sbjct: 38 LAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG----------------HAYIPVD 81
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDR 157
+I +++E I++ A + + +I+ L + + S D
Sbjct: 82 TSIPS----ERIEMIIEA-AGPELVIHTAELSIDAVGTQIITLSALEQAETSGGPVSFD- 135
Query: 158 VLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLS 217
+ ++ ++YTSG+ G K V +SHDN+ ++ F L ++ P S
Sbjct: 136 --HAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSE-GKQFLNQAPFS 192
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNA 243
+D+Y + TL DK+
Sbjct: 193 -FDLSVMDLYPCLASGGTLHCLDKDI 217
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 38.5 bits (89), Expect = 0.003
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 44 KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAG---MYTTNSPEACLH--------C 92
KLG+E+ V I+ N P+ G + AGG +YT E LH C
Sbjct: 68 KLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILC 127
Query: 93 LVTSDANICVVEDDKQLEKIL--KVKAQCPKLKAIVQYEGKPDKPGVI---SWDELMELG 147
L + V+ ++E ++ ++ P K ++ + + ++ S E + L
Sbjct: 128 LDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLW 187
Query: 148 RAAPDESLDRVLETIA--TNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY-FKLE 204
+ E ++ +E N+ L YT GT G K VML+H N+ N +Q+ + +
Sbjct: 188 NSVEKE-VNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCK 246
Query: 205 SAALSVISFLPLSHIAAQT 223
V+ LP H+ T
Sbjct: 247 EGEEVVLGVLPFFHVYGMT 265
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 38.1 bits (89), Expect = 0.004
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQY 200
D A PD D + L++TSGT G K V +H + + Q
Sbjct: 141 DAEPPFRVADPD---DLFM----------LIFTSGTSGDPKAVRCTHRKVASAGVMLAQR 187
Query: 201 FKLESAALSVISFLPLSHIAA 221
F L + +S +PL H A
Sbjct: 188 FGLGPDDVCYVS-MPLFHSNA 207
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 36.9 bits (86), Expect = 0.011
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAA 221
L+ TSG+ G K V+L+H NI +A +Q +S+ +++PL H+
Sbjct: 172 LLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSL-NWMPLDHVGG 222
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 36.8 bits (86), Expect = 0.012
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQ-YF----KLESAALSVISFLPLSH 218
L YTSG+ VM+SH N+ N ++ YF + +V+S+LP H
Sbjct: 165 LQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 37.1 bits (86), Expect = 0.014
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 105 DDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT 164
D + +L V L + + + P ++ D L A E+ +
Sbjct: 113 ADAEPRLLLTVADLRDSLLQMEELAA-ANAPELLCVDTL----DPALAEAWQEP--ALQP 165
Query: 165 NECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVI-SFLPLSH 218
++ L YTSG+ K V +SH N+ N I F ++ VI S+LPL H
Sbjct: 166 DDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYH 220
Score = 32.4 bits (74), Expect = 0.34
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
L+YTSG+ G K V++SH I + +I+ F + +
Sbjct: 2338 LIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRA 2373
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 36.1 bits (84), Expect = 0.018
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 152 DESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS-- 209
+SL + + IA + ++SG+ G K V+L+H N+ N II E+A ++
Sbjct: 98 RDSLLSLPDDIAF-----IQFSSGSTGEPKGVILTHKNLLTNIEAII-----EAAEITSE 147
Query: 210 --VISFLPLSH 218
+S++PL+H
Sbjct: 148 DVFLSWMPLTH 158
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 36.7 bits (85), Expect = 0.018
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQ-YFKLESAALSVISFLPLSHIAAQTVDI 226
++YTSG+ G K V +SH + N C+I +L + S++ + T +
Sbjct: 659 AYVIYTSGSTGQPKGVAISHGALA-NYVCVIAERLQLAADD-SMLMVSTFAFDLGVTE-L 715
Query: 227 YSVMTVAATLWFADKNALK--GSLINTLLEVRPHVFLAVPRVWE 268
+ + ATL + + + + + V VP +
Sbjct: 716 FGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQ 759
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 35.5 bits (82), Expect = 0.027
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 109 LEKILKVKAQCPKLKAIVQYEGK---PDK--PGVISWDELMELGRAAPDESLDRVLETIA 163
LEKI + P ++ V P ++++E + + D +T
Sbjct: 125 LEKI---ADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIA------EADGDFAWKTFD 175
Query: 164 TNECCTLVYTSGTEGASKPVMLSH 187
N + YTSGT G K V+ SH
Sbjct: 176 ENTAAGMCYTSGTTGDPKGVLYSH 199
>gnl|CDD|217463 pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family,
N-terminal region. Within the NapC/NirT family of
cytochrome c proteins, some members, such as NapC and
NirT, bind four haem groups, while others, such as
TorC, bind five haems. This family aligns the common
N-terminal region that contains four haem-binding
C-X(2)-CH motifs.
Length = 174
Score = 34.2 bits (79), Expect = 0.034
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 68 LGAIYAGGFAAGMYTTNSPEACLHC 92
LG ++ GGF + TN+ E C+ C
Sbjct: 18 LGVVFWGGFNTALEATNTEEFCISC 42
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 34.6 bits (80), Expect = 0.064
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 115 VKAQCPKLKAIVQYEGKPDKPGVISWDELM--ELGRAAPDESLDRVLETIATNECCTLVY 172
V+A P L +V G + L+ LG + ++D ++ C +
Sbjct: 121 VRAASPDLTHVVAIGGARAGLDY---EALVARHLGARVANAAVDH-------DDPCWFFF 170
Query: 173 TSGTEGASKPVMLSHDNITF 192
TSGT G K +L+H + F
Sbjct: 171 TSGTTGRPKAAVLTHGQMAF 190
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 34.3 bits (79), Expect = 0.073
Identities = 58/245 (23%), Positives = 84/245 (34%), Gaps = 31/245 (12%)
Query: 3 AFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPE 62
A L ERY ++ F W Y++ A A A G++R V ++ N E
Sbjct: 25 AMLARQAERYPDRPLLVFGGTRWTYAEAARA-AAAAAHALAAAGVKRGDRVALMCGNRIE 83
Query: 63 WFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKL 122
+ LG + G A + T H L S A + VVE L + L
Sbjct: 84 FLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAA-LLAALEAADPGDLPL 142
Query: 123 KAIVQYEGKPDKPGVISWD--ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 180
A+ + W L L AP + + + ++YTSGT G S
Sbjct: 143 PAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAA-------VQPGDTAAILYTSGTTGPS 195
Query: 181 KPVMLSHDNITFNAACIIQYF--------KLESAALSVI-SFLPLSHIAAQTVDIYSVMT 231
K V H Q++ LE A V+ + LPL H A + +
Sbjct: 196 KGVCCPH----------AQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNA-FFQALL 244
Query: 232 VAATL 236
AT
Sbjct: 245 AGATY 249
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 33.9 bits (78), Expect = 0.11
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84
W +++L + A LG+ R V ++ PE + LG I G T
Sbjct: 1 WTFAEL-KEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQL 59
Query: 85 SPEACLHCLVTSDANICVVEDD 106
P+ + L + A V D
Sbjct: 60 GPKDIRYRLERAGARAIVTSAD 81
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 33.5 bits (77), Expect = 0.14
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
L++TSGT GA K V SH + F + + F L + +S +PL H
Sbjct: 155 LIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVS-MPLFH 202
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 33.3 bits (76), Expect = 0.14
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHI 219
YTSGT G K +L+ +N+ +NA L S I LPL HI
Sbjct: 156 YTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRS-IVLLPLFHI 202
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 33.0 bits (76), Expect = 0.16
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIY 227
+T GT GA K SH N NA L +++ LPL H+ V
Sbjct: 5 AAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGD-VLLNGLPLFHVGGAIVTGL 63
Query: 228 SVMTVAATLWFADKNALKG-SLINTLLEV----RPHVFLAVPRV 266
+ + AT+ + + +++ ++ R + AVP V
Sbjct: 64 APLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTV 107
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 33.4 bits (76), Expect = 0.16
Identities = 51/265 (19%), Positives = 85/265 (32%), Gaps = 47/265 (17%)
Query: 10 ERYHSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG 69
+ + Y++L A A LA+ + LG+ +V I+ + E + L
Sbjct: 238 ATTPDAVALVRGGQQLTYAELDA-RANRLARLLISLGVGPGETVAILADRSLELVVALLA 296
Query: 70 AIYAGGFAAGMYTTNSPE--ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQ 127
+ AG Y P A + D+ ++ L P L
Sbjct: 297 VLKAGAA----YVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDD---VGLPGLALDDA 349
Query: 128 YEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
PD + +A ++L ++ YTSG+ G K V + H
Sbjct: 350 LSEIPDTD---------PIPQALLGDALAYII------------YTSGSTGQPKGVRIEH 388
Query: 188 DNI--TFNAACIIQYFKLES----AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241
+ N F L++ AL+ +SF A +I+ + A L A
Sbjct: 389 RALANLLND--AGARFGLDADDRVLALASLSFD------ASVFEIFGALLEGARLVLAPA 440
Query: 242 NALK--GSLINTLLEVRPHVFLAVP 264
+L+ L V L VP
Sbjct: 441 LLQVDPAALLELLEAQGITVLLLVP 465
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 33.1 bits (76), Expect = 0.17
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 120 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIAT------NECCTLVYT 173
P L+ +V G G S++ L+ P + I ++ L+YT
Sbjct: 154 PALRHVVVVGGD----GADSFEALL----ITPAWEQEPDAPAILARLRPGPDDVTQLIYT 205
Query: 174 SGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230
SGT G K VM + + + N + +L A VI L S +A QT +Y +M
Sbjct: 206 SGTTGEPKGVMHTANTLMANIVPYAE--RLGLGADDVI--LMASPMAHQTGFMYGLM 258
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 33.0 bits (76), Expect = 0.17
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN 189
+ + ELM + + + E +E T++YTSGT G K V+ ++ N
Sbjct: 118 SVKFAELMNGPKEEAE-----IQEEFDLDEVATIMYTSGTTGKPKGVIQTYGN 165
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 33.0 bits (76), Expect = 0.19
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 191
V+ T + ++ ++YTSG+ G K V+++H NI
Sbjct: 91 TVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNIC 125
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 32.7 bits (75), Expect = 0.21
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 27/161 (16%)
Query: 35 AGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 94
AGGLA LG+ V ++ N +F + A+ G +A + PE + L
Sbjct: 25 AGGLAA----LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILE 80
Query: 95 TSDANICVVEDD--KQLEKILKVKAQCPKLKA-----IVQ-YEGKPD----KPGVISWDE 142
S A + + D L L A L I Y P G I W+
Sbjct: 81 DSGARVLIAHADLLHGLASALP--AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEG 138
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
+ + + +++YTSGT G K V
Sbjct: 139 WLAQQEPY---------DGPPVPQPQSMIYTSGTTGHPKGV 170
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 32.9 bits (76), Expect = 0.22
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 28/112 (25%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA----ALSVISF--------LPLS 217
++YTSG+ G K V +SH + + + L ++ A++ ISF LPL
Sbjct: 98 VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVTTISFDISVLELLLPL- 156
Query: 218 HIAAQTVDIYSVMTVAATLWFADKNALKG--SLINTLLEVRPHVFLAVPRVW 267
AT+ A ++ L + + R + A P W
Sbjct: 157 -------------LSGATVVIASAETVRDPERLARLIADERITIMQATPATW 195
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein]
ligase; Validated.
Length = 539
Score = 32.9 bits (75), Expect = 0.22
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 166 ECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
+ +++TSGTE K V L+H N+ N +++F + + ++SFLP H
Sbjct: 184 DVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDV-MMSFLPPFH 235
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 32.7 bits (75), Expect = 0.23
Identities = 46/168 (27%), Positives = 64/168 (38%), Gaps = 37/168 (22%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDL-----GAIYA---GGFAAGMYTTNSPEAC 89
LA KLG+ + V I PE + L GAI++ GGFA S E
Sbjct: 86 LAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA-------SKELA 138
Query: 90 L---HC----LVTSDANI---CVVEDDKQLEKILKVKAQCPKLKAIV----QYEGKPDKP 135
+VT+ I VV L+K L+ +Q K ++ Q
Sbjct: 139 SRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALE-LSQHKPHKVLILNRGQVPAPLKPG 197
Query: 136 GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
+ W ELM +A P + + +T+ L YTSGT G K V
Sbjct: 198 RDLDWAELMA--KARPVD----CVPVESTDPLYIL-YTSGTTGKPKGV 238
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 32.5 bits (75), Expect = 0.27
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 141 DELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNIT 191
L+ L E + ++ ++YTSG+ G K V + H +
Sbjct: 103 LPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.
Length = 631
Score = 32.4 bits (74), Expect = 0.31
Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 29/157 (18%)
Query: 69 GAIYAGGFAAGMYTTNSPEAC--LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIV 126
GA+YAG A ++ P LH V DD IL ++
Sbjct: 98 GALYAGRIAVPLFDPAEPGHVGRLH----------AVLDDCTPSAILTTTDSAEGVRKFF 147
Query: 127 QYEGKPDKPGVISWDELMELGRAAPDESLDRVLET-----IATNECCTLVYTSGTEGASK 181
+ ++P VI+ D A PDE V T + L YTSG+
Sbjct: 148 RARPAKERPRVIAVD-------AVPDE----VGATWVPPEANEDTIAYLQYTSGSTRIPA 196
Query: 182 PVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSH 218
V ++H N+ N +I + + V S+LP H
Sbjct: 197 GVQITHLNLPTNVLQVIDALEGQEGDRGV-SWLPFFH 232
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 31.8 bits (72), Expect = 0.41
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
L+YTSGT K VM S+ N+ + + + L +A+ ++ PL H+ A + +V
Sbjct: 154 LMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGL-TASERLLVVGPLYHVGAFDLPGIAV 212
Query: 230 MTVAATL 236
+ V TL
Sbjct: 213 LWVGGTL 219
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 31.8 bits (73), Expect = 0.45
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN-ITFNAA 195
VI+ DEL ++ D ++ ++ +++TSGT G K V +SHDN ++F
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKG---DDNYYIIFTSGTTGKPKGVQISHDNLVSF-TN 173
Query: 196 CIIQYFKLESAA-----------LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK 241
+++ F L LSV+ D+Y + TL K
Sbjct: 174 WMLEDFALPEGPQFLNQAPYSFDLSVM-------------DLYPTLASGGTLVALPK 217
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 31.6 bits (72), Expect = 0.46
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L + A LG+ + V + +PE + + LG + G +++ P
Sbjct: 3 YQEL-KELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFGP 61
Query: 87 EACLHCLVTSDANICV 102
E L +A + +
Sbjct: 62 EPIRDRLELGEAKVLI 77
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 31.5 bits (72), Expect = 0.54
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 20/65 (30%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA---------------LSVIS-F 213
++YTSG+ G K V + H NAA ++Q+ +A LSV F
Sbjct: 110 VIYTSGSTGRPKGVAIEHR----NAAALLQWAAAVFSAEELAGVLAATSICFDLSVFEIF 165
Query: 214 LPLSH 218
+PLS
Sbjct: 166 VPLST 170
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 31.6 bits (72), Expect = 0.58
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 21 NAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80
E+ + L + LA A +LG+ER V + +PE + L G + +
Sbjct: 3 TREEYTFGQLKD-ASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61
Query: 81 YTTNSPEACLHCLVTSDANICVVE 104
P+A H L S A + V +
Sbjct: 62 SVLFGPDAVEHRLRDSGARVLVTD 85
Score = 29.6 bits (67), Expect = 2.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 157 RVLETIATNECCTLVYTSGTEGASKPVMLSH 187
RVL T +++ L+YTSGT G K + H
Sbjct: 80 RVLVTDGSDDPAILIYTSGTTGPPKGALHGH 110
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 31.4 bits (71), Expect = 0.72
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 162 IATNECCTLVYTSGTEGASKPVMLSHDNI 190
I ++ ++Y+SGT GASK V+L+H N+
Sbjct: 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNL 223
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 30.9 bits (70), Expect = 0.93
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 173 TSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTV 232
T+G+ G + +LS + N + L++A S+LPL H + +
Sbjct: 160 TAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAF-LLTAALA 218
Query: 233 AATLWFADKNALKGS 247
A LW A A S
Sbjct: 219 GAPLWLAPTTAFSAS 233
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 30.9 bits (70), Expect = 0.95
Identities = 44/211 (20%), Positives = 71/211 (33%), Gaps = 39/211 (18%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAP---EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLV 94
LA L+LGL V I N+ EW L AGG A + S E ++
Sbjct: 45 LAAGLLRLGLRNGDVVAIAALNSDLYLEWL---LAVACAGGIVAPLNYRWSFEEAKSAML 101
Query: 95 TSDANICVVEDDKQLEKILKVKAQCPKLKAIV-----QYEGKPDKPGVISWDELMELGRA 149
+ V ++ + P L V ++ + L +
Sbjct: 102 LVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG 161
Query: 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALS 209
LD A ++ + +TSGT G K V +SH +A I+Q A ++
Sbjct: 162 TT--ELDYAW---APDDAVLICFTSGTTGRPKGVTISH------SALIVQSL----AKIA 206
Query: 210 VISF---------LPLSHIAAQTVDIYSVMT 231
++ + PL HI + S +
Sbjct: 207 IVGYGEDDVYLHTAPLCHIGG----LSSALA 233
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 30.8 bits (70), Expect = 1.0
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 25 WFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTN 84
Y +L A A LG+ V ++ ++PE + L + AG A +
Sbjct: 11 LTYRELHD-LANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 85 SPEACLHCLVTSDANICVVEDD 106
+P+ H L S A + V E D
Sbjct: 70 TPQDLEHILDDSGAALLVTEAD 91
Score = 27.7 bits (62), Expect = 8.1
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAACII-QYFKLESAALSVISFLPLSHIAAQTVDI 226
+YTSGT G K VM H + A + L + S L +
Sbjct: 94 AYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-QPGDRIFSSSKLFFAYGLGNSL 152
Query: 227 YSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
+ A+ ++++ L RP V VP ++
Sbjct: 153 LFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY 193
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 30.3 bits (69), Expect = 1.5
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 24/175 (13%)
Query: 15 VCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74
I+ + Y +L A + LA LGL V I+ N PE+F +Y
Sbjct: 2 AVIMAPSGEVVTYGELEA-RSNRLAHGLRALGLREGDVVAILLENNPEFF-----EVYWA 55
Query: 75 GFAAGMYTT------NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQY 128
+G+Y T + E + + S A + +V + ++ A+ P +
Sbjct: 56 ARRSGLYYTPINWHLTAAEIA-YIVDDSGAKVLIVSAA-LADTAAELAAELP-AGVPLLL 112
Query: 129 EGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPV 183
PG S++E + A PD + ++Y+SGT G K +
Sbjct: 113 VVAGPVPGFRSYEEALA---AQPDTPIADETAG------ADMLYSSGTTGRPKGI 158
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 30.3 bits (68), Expect = 1.6
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
L+YTSGT G K VM + + + N + +LE VI L S +A QT +Y +
Sbjct: 200 LIYTSGTTGEPKGVMHTANTLFSNIHPYAE--RLELGGGDVI--LMASPMAHQTGFMYGL 255
Query: 230 M 230
M
Sbjct: 256 M 256
>gnl|CDD|205253 pfam13072, DUF3936, Protein of unknown function (DUF3936). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 40 amino acids in length.
There is a conserved GKAW sequence motif. There is a
single completely conserved residue G that may be
functionally important.
Length = 38
Score = 27.0 bits (60), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 255 VRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289
V P + V + WE I KL K+ T VK W++
Sbjct: 5 VHPKGIILVGKAWE-IRAKLKEYSKKYTTVKDWVS 38
>gnl|CDD|234007 TIGR02776, NHEJ_ligase_prk, DNA ligase D. Members of this protein
family are DNA ligases involved in the repair of DNA
double-stranded breaks by non-homologous end joining
(NHEJ). The system of the bacterial Ku protein
(TIGR02772) plus this DNA ligase is seen in about 20 %
of bacterial genomes to date and at least one archaeon
(Archeoglobus fulgidus). This model describes a central
and a C-terminal domain. These two domains may be
permuted, as in genus Mycobacterium, or divided into
tandem ORFs, and therefore not be identified by This
model. An additional N-terminal 3'-phosphoesterase (PE)
domain present in some but not all examples of this
ligase is not included in the seed alignment for this
model; This model models only the central ATP-dependent
ligase domain and the C-terminal polymerase domain. Most
examples of genes for this ligase are adjacent to the
gene for Ku [DNA metabolism, DNA replication,
recombination, and repair].
Length = 552
Score = 30.0 bits (68), Expect = 1.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 29 DLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP-EWFYSDLGAIYAGG 75
L + Y G +K +LKL R I G+ P F + L +Y GG
Sbjct: 126 RLDSPYRSGRSKDWLKLKCRRRQEFVITGYTPPNRRFGALLVGVYEGG 173
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 29.9 bits (68), Expect = 1.9
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 149 AAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA-- 206
AA ES + ++ +++TSG+ G K VM++H + + F + A
Sbjct: 110 AAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADR 169
Query: 207 --ALSVISFLPLSHIAAQTVDIYSVMTVAATL 236
ALS + F LS DI+ ++ A L
Sbjct: 170 VLALSALHF-DLS-----VYDIFGALSAGAAL 195
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 29.6 bits (67), Expect = 2.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 171 VYTSGTEGASKPVMLSHDNITFNAACI 197
VYTSGT G K V+LS I AA +
Sbjct: 134 VYTSGTTGPPKGVVLSRRAI---AADL 157
>gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 30.0 bits (68), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 135 PGVISWDELMELGRAAPDESLDRVLETIATNECCT 169
PGV+SW EL L AP S+ +LET +
Sbjct: 172 PGVMSWSELARLKPVAP--SMGMMLETTSRRLFEE 204
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 29.6 bits (67), Expect = 2.2
Identities = 31/147 (21%), Positives = 50/147 (34%), Gaps = 21/147 (14%)
Query: 90 LHCLVTSDANICVVEDDKQLEKIL-KVKAQCPKLKAIVQYEGK--PDKP----------- 135
+ L + A + + D QL ++ +V+A+ IV P +P
Sbjct: 123 SYELNDAGAEVLLALD--QLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAP 180
Query: 136 --GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 193
+L+ RA L A + L YT GT G K + ++ +
Sbjct: 181 RLAAAGAIDLLPALRACTAPVP---LPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 194 AACIIQYFKLESAALSVISFLPLSHIA 220
AA + +SFLP IA
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPEFWIA 264
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 29.5 bits (66), Expect = 2.7
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 3/119 (2%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSV 229
++YTSG+ G K V + H ++ N C +Q V+ F S + +
Sbjct: 3201 VIYTSGSTGKPKGVGIRHSALS-NHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPL 3259
Query: 230 MTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWI 288
M+ A + ++ +L+ L + + + L + I
Sbjct: 3260 MSGARVVLAGPEDWRDPALLVEL--INSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRI 3316
>gnl|CDD|182590 PRK10617, PRK10617, cytochrome c-type protein NapC; Provisional.
Length = 200
Score = 28.7 bits (64), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 55 IIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHC 92
+IGF G I+ GGF GM N+ E C+ C
Sbjct: 31 LIGFVG--------GIIFWGGFNTGMEKANTEEFCISC 60
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 29.2 bits (66), Expect = 3.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 168 CTLVYTSGTEGASKPVMLSHDNITFNAA 195
++YTSGT G K + +H AA
Sbjct: 103 AMIIYTSGTTGKPKGTVHTHAGFPVKAA 130
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 29.2 bits (66), Expect = 3.1
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNA----------ACIIQYFKLESAALSVISFL---PL 216
++YT GT G K VM ++I + + K +A + FL PL
Sbjct: 8 MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67
Query: 217 SHIAAQT 223
H A Q
Sbjct: 68 MHGAGQW 74
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 29.0 bits (65), Expect = 3.3
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 120 PKLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCT---------- 169
+L A++Q +P ++ D+ + GR E L + + E
Sbjct: 84 SELDALLQ----DAEPRLLLGDDAVAAGRTDV-EDLAAFIASADALEPADTPSIPPERVS 138
Query: 170 -LVYTSGTEGASKPVMLSHDNI 190
+++TSGT G K VMLS N+
Sbjct: 139 LILFTSGTSGQPKGVMLSERNL 160
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 28.9 bits (66), Expect = 3.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 34 YAGGLAKAFLKLGLERYHSVCIIG 57
A G+AKA G E V +IG
Sbjct: 125 AALGMAKARDLKGGEDRKVVAVIG 148
>gnl|CDD|234214 TIGR03445, mycothiol_MshB,
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-
glucopyranoside deacetylase. Members of this protein
family are
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-
glucopyranoside deacetylase, also called
1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-
glucopyranoside deacetylase, the MshB protein of
mycothiol biosynthesis in Mycobacterium tuberculosis and
related species.
Length = 284
Score = 28.6 bits (64), Expect = 3.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 233 AATLWFADKNALKGSLINTLLEVRPHV 259
AD + G+L+ + EVRPHV
Sbjct: 100 PRAFVDADVDEAAGALVAVIREVRPHV 126
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 28.9 bits (65), Expect = 3.9
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAACI--IQYFKLESAALSVISFLPLSHIAAQTVDIY 227
+++TSG+EG K V+ SH ++ N I I F + +S LPL H TV ++
Sbjct: 370 ILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADF---TPNDRFMSALPLFHSFGLTVGLF 426
Query: 228 S-VMTVA 233
+ ++T A
Sbjct: 427 TPLLTGA 433
>gnl|CDD|222031 pfam13292, DXP_synthase_N, 1-deoxy-D-xylulose-5-phosphate synthase.
This family contains 1-deoxyxylulose-5-phosphate
synthase (DXP synthase), an enzyme which catalyzes the
thiamine pyrophosphoate-dependent acyloin condensation
reaction between carbon atoms 2 and 3 of pyruvate and
glyceraldehyde 3-phosphate, to yield 1-deoxy-D-
xylulose-5-phosphate, a precursor in the biosynthetic
pathway to isoprenoids, thiamine (vitamin B1), and
pyridoxol (vitamin B6).
Length = 272
Score = 28.5 bits (65), Expect = 4.1
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 16/47 (34%)
Query: 34 YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGM 80
A G+AKA G E + V +IG D G GM
Sbjct: 119 AALGMAKARDLKG-EDRNVVAVIG---------D------GALTGGM 149
>gnl|CDD|220355 pfam09707, Cas_Cas2CT1978, CRISPR-associated protein
(Cas_Cas2CT1978). This entry represents a minor branch
of the Cas2 family of CRISPR-associated protein which
are found in IPR003799. Cas proteins are found adjacent
to a characteristic short, palindromic repeat cluster
termed CRISPR, a probable mobile DNA element.
Length = 86
Score = 26.8 bits (60), Expect = 4.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 243 ALKGSLINTLLEVRPHVFLAVP------RVWEKIHEKL 274
L+G L LLEVR V++ R+WEK+ E +
Sbjct: 12 RLRGRLARWLLEVRAGVYVGDVSARVRERLWEKVTEGI 49
>gnl|CDD|181883 PRK09468, ompR, osmolarity response regulator; Provisional.
Length = 239
Score = 28.4 bits (64), Expect = 4.3
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 122 LKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLE 160
LKA+V + +P +S D+LM L R +++R ++
Sbjct: 170 LKALVSHPREP-----LSRDKLMNLARGREYSAMERSID 203
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 28.1 bits (63), Expect = 5.8
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 171 VYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVM 230
V TSGT G K ML+ +T +A L LP HIA V + SV+
Sbjct: 41 VATSGTTGTPKGAMLTAAALTASADATHDRLGGPGQWLLA---LPAHHIAGLQVLVRSVI 97
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 28.2 bits (62), Expect = 6.0
Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 16/187 (8%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSD 97
L LG+ V +GFN + G SP+ + L ++
Sbjct: 37 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 96
Query: 98 ANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA--APDESL 155
+ + + + +L + VQ E A +
Sbjct: 97 DKVLLFDPN-----LLPLVEAIRGELKTVQ-HFVVMDEKAPEGYLAYEEALGEEADPVRV 150
Query: 156 DRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSV-ISFL 214
YT+GT G K V+ SH + ++ + V + +
Sbjct: 151 PER-AACGMA------YTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVV 203
Query: 215 PLSHIAA 221
P+ H+ A
Sbjct: 204 PMFHVNA 210
>gnl|CDD|225550 COG3005, TorC, Nitrate/TMAO reductases, membrane-bound tetraheme
cytochrome c subunit [Energy production and
conversion].
Length = 190
Score = 27.8 bits (62), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 69 GAIYAGGFAAGMYTTNSPEACLHC 92
G ++ GGF G+ TN+ E C+ C
Sbjct: 28 GILFWGGFNVGLELTNTEEFCVSC 51
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 27.8 bits (62), Expect = 7.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 168 CTLVYTSGTEGASKPVMLS 186
L+YTSGT G K +S
Sbjct: 90 AALIYTSGTTGLPKGCAIS 108
Score = 27.8 bits (62), Expect = 7.9
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 20 FNAPEWFYSDLGAIYAGGLAKAFLK-LGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAA 78
F W YS+ + A ++ V I N+ E+ + L G A
Sbjct: 1 FEGKTWTYSETYDLVLR-YAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPA 59
Query: 79 GMYTTNSPEACLHCLVTSDANICVVEDDK 107
+ S + +HCL S A +V+ D
Sbjct: 60 FINYNLSGDPLIHCLKISGAKFVIVDPDD 88
>gnl|CDD|234009 TIGR02779, NHEJ_ligase_lig, DNA polymerase LigD, ligase domain.
DNA repair of double-stranded breaks by non-homologous
end joining (NHEJ) is accomplished by a two-protein
system that is present in a minority of prokaryotes. One
component is the Ku protein (see TIGR02772), which binds
DNA ends. The other is a DNA ligase, a protein that is a
multidomain polypeptide in most of those bacteria that
have NHEJ, a permuted polypeptide in Mycobacterium
tuberculosis and a few other species, and the product of
tandem genes in some other bacteria. This model
represents the ligase domain.
Length = 298
Score = 27.6 bits (62), Expect = 8.1
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 29 DLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLG----AIYAGG 75
+ Y G + +LKL R I G+ P S G +Y GG
Sbjct: 165 RRDSPYRSGRSADWLKLKCRRRQEFVIGGYTPPNGSRSGFGALLLGVYEGG 215
>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase.
Length = 477
Score = 27.9 bits (62), Expect = 8.8
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 264 PRVWEKIHEKLMAVGKQ-TTGVKR 286
P+ + K+ E+L+ V ++ TTGVKR
Sbjct: 181 PKKYHKMKERLVGVSEETTTGVKR 204
>gnl|CDD|182832 PRK10911, PRK10911, oligopeptidase A; Provisional.
Length = 680
Score = 27.9 bits (62), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 60 APEW--FYSDLGAIYAGGFAAGMYT 82
+P W F I+AGG+AAG Y+
Sbjct: 589 SPSWGRFPHAFSHIFAGGYAAGYYS 613
>gnl|CDD|235746 PRK06215, PRK06215, hypothetical protein; Provisional.
Length = 238
Score = 27.4 bits (61), Expect = 9.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 201 FKLESAALSVISFLPLSHIAAQTVDIYSVMT-VAATLWFADKN 242
+K + + V SFL S+ + TVDI +V+ + WF D
Sbjct: 167 YKGSNGSNKVFSFLRTSNTNSGTVDILAVLKWIKTKGWFGDVT 209
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0909 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,449,243
Number of extensions: 1465784
Number of successful extensions: 1549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1470
Number of HSP's successfully gapped: 169
Length of query: 305
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 208
Effective length of database: 6,635,264
Effective search space: 1380134912
Effective search space used: 1380134912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.2 bits)