RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2835
(305 letters)
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 109 bits (275), Expect = 4e-27
Identities = 39/201 (19%), Positives = 74/201 (36%), Gaps = 5/201 (2%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++ + L KA GL + + N E+F + ++ G A +
Sbjct: 55 YAEYLE-KSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
+H L S I L+K++ V+ +K IV + K D G D ++
Sbjct: 114 RELVHSLGISKPTIVFSSKK-GLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKR 172
Query: 147 GRAAPDESLD-RVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLE- 204
++ + +E + ++ +SG+ G K V L+H+NI +
Sbjct: 173 NTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ 232
Query: 205 -SAALSVISFLPLSHIAAQTV 224
S +V++ +P H
Sbjct: 233 VSPGTAVLTVVPFHHGFGMFT 253
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 106 bits (266), Expect = 8e-26
Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 5/207 (2%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++ + LA+A + GL H + + N+ ++F LGA++ G A +
Sbjct: 53 YAEYFE-MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
L+ + S + V L+KIL V+ + P ++ I+ + K D G S +
Sbjct: 112 RELLNSMNISQPTVVFVSKK-GLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 170
Query: 147 GRAAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQ--YFKL 203
D V E+ ++ ++ +SG+ G K V L H + +
Sbjct: 171 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 230
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVM 230
+++S +P H + ++
Sbjct: 231 IIPDTAILSVVPFHHGFGMFTTLGYLI 257
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 99.6 bits (249), Expect = 1e-23
Identities = 49/239 (20%), Positives = 97/239 (40%), Gaps = 17/239 (7%)
Query: 3 AFLKLGLERY-HSVCII-GFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNA 60
+++ L + C+I G N + Y+D+ A +A K+G+++ + + ++
Sbjct: 26 SYVLENLSNHSSKPCLINGANGDVYTYADVEL-TARRVASGLNKIGIQQGDVIMLFLPSS 84
Query: 61 PEWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP 120
PE+ + LGA + G ++P S A + + + EK+ +
Sbjct: 85 PEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQAC-YYEKVKDFARESD 143
Query: 121 KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 180
+K + + PD G + + EL + + I+ ++ L Y+SGT G
Sbjct: 144 -VKVMC-VDSAPD--GCLHFSELTQADENEAPQ------VDISPDDVVALPYSSGTTGLP 193
Query: 181 KPVMLSHDNITFNAACIIQYFKLESAALS---VISFLPLSHIAAQTVDIYSVMTVAATL 236
K VML+H + + A + S ++ LP+ HI A + + V A +
Sbjct: 194 KGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI 252
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 98.8 bits (247), Expect = 3e-23
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 17/255 (6%)
Query: 15 VCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAG 74
I Y +L A A A LG+ + ++ + + LGA+YAG
Sbjct: 40 TAYIDDTG-STTYGELEE-RARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAG 97
Query: 75 GFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKA--IVQYEGKP 132
T +P ++ L S A + ++ + + IV +
Sbjct: 98 VVPVVANTLLTPADYVYMLTHSHARAVIA-SGALVQNVTQALESAEHDGCQLIVSQPRES 156
Query: 133 DKPGVISWDELMELGRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSHDNI 190
+ ++EL++ AA + AT ++ +Y+SG+ G K + +H N+
Sbjct: 157 EPRLAPLFEELID---AAAPA-----AKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANL 208
Query: 191 TFNAACIIQY-FKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249
+ A + + + V S L + ++V AT + ++
Sbjct: 209 YWTAELYAKPILGIAENDV-VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIF 267
Query: 250 NTLLEVRPHVFLAVP 264
L+E RP VF VP
Sbjct: 268 ARLVEHRPTVFYGVP 282
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 98.2 bits (245), Expect = 6e-23
Identities = 55/242 (22%), Positives = 96/242 (39%), Gaps = 17/242 (7%)
Query: 4 FLKLGLERY-HSVCII-GFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAP 61
++ + + C+I G + YSD+ I +A F KLG+ + V ++ N P
Sbjct: 66 YIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQ-IAANFHKLGVNQNDVVMLLLPNCP 124
Query: 62 EWFYSDLGAIYAGGFAAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCP- 120
E+ S L A + G A +P S+ + + E ++KI ++
Sbjct: 125 EFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEAR-YVDKIKPLQNDDGV 183
Query: 121 KLKAIVQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGAS 180
+ I E P G + + EL + A + I+ ++ L Y+SGT G
Sbjct: 184 VIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSGTTGLP 240
Query: 181 KPVMLSHDNITFNAACIIQYFKLESAALS------VISFLPLSHIAAQTVDIYSVMTVAA 234
K VML+H + + Q E+ L ++ LP+ HI A + + V A
Sbjct: 241 KGVMLTHKGLV---TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGA 297
Query: 235 TL 236
+
Sbjct: 298 AI 299
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 96.9 bits (242), Expect = 1e-22
Identities = 56/258 (21%), Positives = 93/258 (36%), Gaps = 24/258 (9%)
Query: 13 HSVCIIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIY 72
H + I + Y++L A AG +A + GL+ V + E L +
Sbjct: 17 HKLAIETAAGDKISYAELVA-RAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVR 75
Query: 73 AGGFAA---GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYE 129
AGG YT E + + ++ I V D + + I + A+ +
Sbjct: 76 AGGVYLPLNTAYTL--HELD-YFITDAEPKIVVC-DPSKRDGIAAIAAKVGATVETL--- 128
Query: 130 GKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDN 189
G S + A ++ ++YTSGT G SK MLSHDN
Sbjct: 129 ---GPDGRGSLTDAAAGASEAFAT------IDRGADDLAAILYTSGTTGRSKGAMLSHDN 179
Query: 190 ITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLI 249
+ N+ ++ Y++ +I LP+ H V + ++ F K L
Sbjct: 180 LASNSLTLVDYWRFTPDD-VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL- 237
Query: 250 NTLLEVRPHVFLAVPRVW 267
L+ R V + VP +
Sbjct: 238 -DLMA-RATVLMGVPTFY 253
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 91.5 bits (228), Expect = 7e-21
Identities = 32/245 (13%), Positives = 73/245 (29%), Gaps = 17/245 (6%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ D A A LA L+ G+ V I+ N E G +
Sbjct: 31 RLTHRDYLAR-AERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
+ + L ++ V D + + V +K +
Sbjct: 90 LNADEIAFVLGDGAPSVVVAGTD-YRDIVAGVLPSLGGVKKAYAIGDGSG-----PFAPF 143
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 203
+L P + + +++T+ G + ++S N+ + ++ ++L
Sbjct: 144 KDLASDTPFSAPEFGAADGFV-----IIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRL 198
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINTLLEVRPHVFLA 262
A +++ LPL H+ + + ++ A K + + + V
Sbjct: 199 TEADVNLGM-LPLFHVTGLGL-MLTLQQAGGASVIAAKFDP--AQAARDIEAHKVTVMAE 254
Query: 263 VPRVW 267
+
Sbjct: 255 FAPML 259
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 90.3 bits (225), Expect = 2e-20
Identities = 44/238 (18%), Positives = 77/238 (32%), Gaps = 16/238 (6%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
+ ++ LA + G+ + V + N+ ++ + +
Sbjct: 55 FLEICE-VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKS 113
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
H L S+A VV E V + + V V S E+M+
Sbjct: 114 FELEHILNDSEATTLVVHSM-LYENFKPVLEKTGVERVFV------VGGEVNSLSEVMDS 166
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
G + E +A + YT GT G K VML+H N+ NA + L
Sbjct: 167 GSEDFENVKVNPEEDVAL-----IPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM 221
Query: 207 ALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVP 264
+++ +P+ H A + V V + L + + + AVP
Sbjct: 222 D-TIVGCMPMFHSAEFGLVNLMVT-VGNEYVVMGMFNQEM-LAENIEKYKGTFSWAVP 276
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 88.4 bits (220), Expect = 7e-20
Identities = 53/252 (21%), Positives = 96/252 (38%), Gaps = 19/252 (7%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ Y+ + A A A LG+ + V ++ N+ E+ GA G
Sbjct: 36 VEPSTDVRMTYAQMNA-LANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94
Query: 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 136
A + T + L S + + + I ++AQ + + G
Sbjct: 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAP-SAPVIDAIRAQADPPGTVTDWIG------ 147
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
D L E R+A D ++ ++YTSGT G K V+ +H+++ A+
Sbjct: 148 ---ADSLAERLRSAAA---DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 197 IIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINTLLEV 255
+ ++ LP+ H+AA T I+S M TL + +A + + ++E
Sbjct: 202 WASTIDVRYRDRLLLP-LPMFHVAALTTVIFSAM-RGVTLISMPQFDA--TKVWSLIVEE 257
Query: 256 RPHVFLAVPRVW 267
R + AVP +
Sbjct: 258 RVCIGGAVPAIL 269
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 84.5 bits (210), Expect = 2e-18
Identities = 34/256 (13%), Positives = 73/256 (28%), Gaps = 27/256 (10%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ +++L A +A GL V ++ N+ + + L G
Sbjct: 22 AVPARGLRLTHAELRA-RVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80
Query: 77 AA---GMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPD 133
A S E + + V+ +Q+ + Q I+
Sbjct: 81 PALLNPRLK--SAEL-AELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDLVR 134
Query: 134 KPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFN 193
S+ +E + P + + YTSGT G K ++
Sbjct: 135 DGEPYSYGPPIEDPQREPAQ-------------PAFIFYTSGTTGLPKAAIIPQRAAESR 181
Query: 194 AACIIQYFKLESAALSVI-SFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINT 251
+ L +V+ +PL H+ + + + + T ++ +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRP--VDALQL 239
Query: 252 LLEVRPHVFLAVPRVW 267
+ + + A P
Sbjct: 240 VQQEQVTSLFATPTHL 255
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 81.8 bits (203), Expect = 1e-17
Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 11/246 (4%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ Y +L A LAK L + V + N+ + A A + T
Sbjct: 26 SYTYQNLYC-EASLLAKR---LKAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 84 NSPEACLHCLVTSDANICVVEDD-KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
+P + + + D + + + + G D I +D
Sbjct: 82 LTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT 141
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFK 202
E + + + + ++ ++++TSGT G K V + N +A +
Sbjct: 142 SNETVVPK-ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG 200
Query: 203 LESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADK-NALKGSLINTLLEVRPHVFL 261
+ + +S LP+ HI+ +V + +V+ T+ DK NA ++ + R
Sbjct: 201 FDRDT-NWLSVLPIYHISGLSVLLRAVI-EGFTVRIVDKFNA--EQILTMIKNERITHIS 256
Query: 262 AVPRVW 267
VP+
Sbjct: 257 LVPQTL 262
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 81.1 bits (201), Expect = 2e-17
Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 43/247 (17%)
Query: 27 YSDLGAI---YAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
Y++L A AG + A R V + A E + + A+ AG A +
Sbjct: 51 YAELAAAAGATAGRIGGA------GR---VAVWATPAMETGVAVVAALLAGVAAVPLNPK 101
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
+ + H L S ++ + D +L P G + ++
Sbjct: 102 SGDKELAHILSDSAPSLVLAPPDAEL----------------------PPALGALERVDV 139
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 203
R A E + + +VYTSGT G K ++ + + ++
Sbjct: 140 DVRARGAVPE------DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW 193
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAV 263
+ ++ LPL H+ + I + ++ + + +G+ L + V
Sbjct: 194 -TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAA--RELNDGATMLFGV 250
Query: 264 PRVWEKI 270
P ++ +I
Sbjct: 251 PTMYHRI 257
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 80.3 bits (199), Expect = 5e-17
Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 27/226 (11%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
W Y +L A LA F KLG+++ V + N E+F G A
Sbjct: 50 HWSYRELDT-RADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLG---ALPVFA 105
Query: 84 N----SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKP 135
S E + ++A ++ D +V+++ P LK I+ G+
Sbjct: 106 LPSHRSSEI-TYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNII-VAGEA--E 161
Query: 136 GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
+ ++L P+ V L + G+ G SK + +HD+ ++
Sbjct: 162 EFLPLEDLHTEPVKLPEVKSSDV---------AFLQLSGGSTGLSKLIPRTHDDYIYSLK 212
Query: 196 CIIQYFKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 240
++ L+ + + + + LP++H + + V+ + +
Sbjct: 213 RSVEVCWLDHSTVYLAA-LPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 78.4 bits (194), Expect = 2e-16
Identities = 25/228 (10%), Positives = 67/228 (29%), Gaps = 27/228 (11%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGG---FAAGM 80
+ Y +L A LA + + G++ + + N E + + + G A
Sbjct: 50 QLSYRELNQ-AADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFS 108
Query: 81 YTTNSPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKPG 136
+ E + + + + + + + ++ + G
Sbjct: 109 HQ--RSEL-NAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND----SG 161
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
+ + + +E + GT G K + +H++ ++
Sbjct: 162 EHNLQDAINHPAEDFTA------TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR 215
Query: 197 IIQYFKL--ESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFADK 241
++ + ++ L +P +H A + V T+ A
Sbjct: 216 SVEICQFTQQTRYLCA---IPAAHNYAMSSPGSLGVFLAGGTVVLAAD 260
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 76.0 bits (188), Expect = 1e-15
Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 23/226 (10%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ Y +L + LA + GL + + + N E++ + AG +
Sbjct: 55 QLSYIELDR-LSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG---VVVLNA 110
Query: 84 N----SPEACLHCLVTSDANICVVEDDKQ----LEKILKVKAQCPKLKAIVQYEGKPDKP 135
E + + + + + I + + I+ +
Sbjct: 111 LYSHRQYEL-NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDF 169
Query: 136 GVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAA 195
G++ W E + +E + G+ G K + +H++ ++
Sbjct: 170 GLLDWIET--------PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVR 221
Query: 196 CIIQYFKLESAALSVISFLPLSHIAAQTVD-IYSVMTVAATLWFAD 240
+ L S + + LP H + V+ + A
Sbjct: 222 ASAEICGLNSNTRLLCA-LPAPHNFMLSSPGALGVLHAGGCVVMAP 266
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 69.6 bits (171), Expect = 2e-13
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 14/167 (8%)
Query: 24 EWFYSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYT 82
W + +L + A GL+R V ++ PEW+ LG I AG
Sbjct: 73 MWNFRELSE-NSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131
Query: 83 TNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
L+ L S A +V D+ ++++ V ++CP L+ + K G +++ +
Sbjct: 132 QMKSTDILYRLQMSKAK-AIVAGDEVIQEVDTVASECPSLRIKLLVSEKS-CDGWLNFKK 189
Query: 143 LMELGRAAPDESLDRVLETIAT--NECCTLVYTSGTEGASKPVMLSH 187
L+ A + T E + +TSGT G K S+
Sbjct: 190 LLN---EASTT-----HHCVETGSQEASAIYFTSGTSGLPKMAEHSY 228
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 66.0 bits (162), Expect = 2e-12
Identities = 29/165 (17%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ + DL Y+ A F+K G+ + V + + +++Y LG G A
Sbjct: 86 IFTFKDLKY-YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144
Query: 84 NSPEACLHCLVTSDANICVVEDDKQL-EKILKVKAQCPKLKAIVQYEGKPDKPGVISWDE 142
++ + + + V + + E++ + A+C + G G I + +
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRK 204
Query: 143 LMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSH 187
+E ++P + + C + ++SGT G K V +
Sbjct: 205 ELE--ESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDN 247
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 56.9 bits (138), Expect = 2e-09
Identities = 45/260 (17%), Positives = 77/260 (29%), Gaps = 57/260 (21%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y L A A AK L L L++ V +I + E+ + YAG A +
Sbjct: 52 YQTLKAR-AEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGV 110
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQC---------PKLKAIVQYEGKPDKPGV 137
+ D K+ + A C L + + V
Sbjct: 111 G----------------QRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV 154
Query: 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
+S L A L+ N+ L YTSG+ + V+++H + N I
Sbjct: 155 LSHAWFKALPEADVA------LQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAI 208
Query: 198 IQYFKLESAALSVISFLPLSH----IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLL 253
+S+LP H + + + ++ +
Sbjct: 209 SHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVAT----QLSVDY--------------- 249
Query: 254 EVRPHVFLAVPRVW-EKIHE 272
+R F P W + I +
Sbjct: 250 -LRTQDFAMRPLQWLKLISK 268
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 55.5 bits (134), Expect = 7e-09
Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 40/213 (18%)
Query: 68 LGAIYAGGFAAGMYTTNSPEACLH-CLVTSDAN-ICVVEDDKQLEKILKVKAQCPKLKAI 125
LGA+ AG A + V SD++ + ++ ++ +++ A+ P
Sbjct: 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESP- 158
Query: 126 VQYEGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVML 185
P +I D L D + L YTSG+ V++
Sbjct: 159 ---------PSIIEVDLL------DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVM 203
Query: 186 SHDNITFNAACIIQYFKLESAALS-----VISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
SH N+ N ++ + ++ + ++S+LP H + I + +
Sbjct: 204 SHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVL-- 261
Query: 241 KNALKGSLINTLLEVRPHVFLAVPRVW-EKIHE 272
P FL P W +
Sbjct: 262 --------------TSPVSFLQRPARWMHLMAS 280
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 52.5 bits (127), Expect = 7e-08
Identities = 53/259 (20%), Positives = 100/259 (38%), Gaps = 31/259 (11%)
Query: 38 LAKAFLKLGLERYHSVCIIGFNAP---EWFY--SDLGAIYAGGFAAGMYTTN---SPEAC 89
L LG+ V +GFN E ++ +GA+ ++T N SP+
Sbjct: 60 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV--------LHTANPRLSPKEI 111
Query: 90 LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGRA 149
+ L ++ + + D L + ++ + ++ V + G ++++E LG
Sbjct: 112 AYILNHAEDKVLLF-DPNLLPLVEAIRGELKTVQHFVVM-DEKAPEGYLAYEEA--LGEE 167
Query: 150 APDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNA--ACIIQYFKLESAA 207
A + E C + YT+GT G K V+ SH + ++ A ++ L S
Sbjct: 168 ADPVRVP---E----RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-SEK 219
Query: 208 LSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
V+ +P+ H+ A + Y+ V A SL+ VP VW
Sbjct: 220 DVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 278
Query: 268 EKIHEKLMAVGKQTTGVKR 286
+ + L + G + ++R
Sbjct: 279 LALADYLESTGHRLKTLRR 297
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 52.3 bits (126), Expect = 9e-08
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 25/197 (12%)
Query: 27 YSDLGA---IYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
Y L A L K G +R V ++ + LG +YAG A +Y
Sbjct: 43 YEQLDQHAKAIAATLQAEGAKPG-DR---VLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 84 NSPEAC--LHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWD 141
+ +VT+ + V+ ++K + K K I+ +
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNT---------NPKFLKIPAIALE 149
Query: 142 ELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
+ ++ +I +N+ L YTSG+ K VM+SH N+ N I F
Sbjct: 150 SIELNRSSSWQ------PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203
Query: 202 KLESAALSVISFLPLSH 218
+ + S+LP H
Sbjct: 204 HMNDETIIF-SWLPPHH 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 44/246 (17%), Positives = 75/246 (30%), Gaps = 107/246 (43%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
A +AG HS+ G E Y+ L ++ A
Sbjct: 1749 SKGLIPADATFAG--------------HSL---G----E--YAALASL-ADVM------- 1777
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
S E+ + +++ + + A+ + E G+I+ +
Sbjct: 1778 -SIESLV--------------------EVVFYRGMTMQ-VAVPRDELGRSNYGMIAINP- 1814
Query: 144 MELGRAAP---DESLDRVLETIA--TNECCTLVYTSGTEGASKPVMLSHDNITFNAACII 198
GR A E+L V+E + T +V N +N
Sbjct: 1815 ---GRVAASFSQEALQYVVERVGKRTGWLVEIV-----------------N--YNVE-NQ 1851
Query: 199 QYFKL----ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLE 254
QY + AL ++ + L+ I Q +DI L+ SL +L E
Sbjct: 1852 QY---VAAGDLRALDTVTNV-LNFIKLQKIDII---------------ELQKSL--SLEE 1890
Query: 255 VRPHVF 260
V H+F
Sbjct: 1891 VEGHLF 1896
Score = 38.5 bits (89), Expect = 0.003
Identities = 35/260 (13%), Positives = 70/260 (26%), Gaps = 90/260 (34%)
Query: 79 GM----YTTNSPEACLHCLVTSDANICVVED-DKQLEK-----ILKVKAQCPKLKAIVQY 128
GM Y S A V D + IL + P I +
Sbjct: 1630 GMGMDLYK-TSKAA-----------QDVWNRADNHFKDTYGFSILDIVINNPVNLTI--H 1675
Query: 129 EGKPDKPGVISWDELMELGRAAPDESLDRVLETIATNECCTL-VYTSGTEGASKPVMLSH 187
G G+ + + ETI + T ++ E ++
Sbjct: 1676 FGGEK-------------GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-YTFRS 1721
Query: 188 D----NITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDI------------YSVMT 231
+ + T Q AL+++ + ++ + Y+ +
Sbjct: 1722 EKGLLSATQFT----Q------PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 232 -VAATLWFADKNALK-----GSLINTLLE-------------VRPH-VFLAVPRVWEKIH 271
+A + ++ G + + + P V + + E +
Sbjct: 1772 SLADVMSIES--LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQ 1827
Query: 272 EKLMAVGKQTTGVKRWIANY 291
+ VGK+T + I NY
Sbjct: 1828 YVVERVGKRTGWLV-EIVNY 1846
Score = 28.5 bits (63), Expect = 3.5
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 221 AQTV----DIYSVMTVAATLW-FADK---NALKGSLINTLLEVRP--HVFLAVPRVWEKI 270
+Q D+Y A +W AD + S+++ ++ P ++I
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN-NPVNLTIHFGGEKGKRI 1684
Query: 271 HEKLMA 276
E A
Sbjct: 1685 RENYSA 1690
Score = 28.5 bits (63), Expect = 3.9
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 55/151 (36%)
Query: 179 ASKPVMLSHDNIT----------FNAACIIQYFK------LESAAL-----SVISFLP-- 215
+++P+ LSH ++ F A+ + + F E A + +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 216 LSHIA--------AQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVW 267
L +++ Q + + L + L+G+ I H A
Sbjct: 65 LGYVSSLVEPSKVGQFDQV-----LNLCLTEFENCYLEGNDI--------HALAA----- 106
Query: 268 EKIHEKLMAVGKQTTG-VKRWIANYAKSTSL 297
KL+ T K I NY + +
Sbjct: 107 -----KLLQENDTTLVKTKELIKNYITARIM 132
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite
reductase, NRFA, NAPC/NIRT family, membrane complex,
oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio
vulgaris} PDB: 2vr0_C*
Length = 159
Score = 34.0 bits (77), Expect = 0.028
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 68 LGAIYAGGFAAGMYTTNSPEACLHC 92
LG + A GM T+ C C
Sbjct: 22 LGVVALATVAFGMKYTDQRPFCTSC 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.13
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 107 KQLEKILKVKA--QCPKL--KAIVQ 127
K+L+ LK+ A P L KA ++
Sbjct: 23 KKLQASLKLYADDSAPALAIKATME 47
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 31.9 bits (72), Expect = 0.25
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 148 RAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAA 207
A SLD V + + T + G H+++T +++ F
Sbjct: 316 EFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMT----LLVRNFGYPLGE 371
Query: 208 LSVISFLPLS 217
+S + P
Sbjct: 372 MSQPTPSPAP 381
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 30.3 bits (69), Expect = 0.82
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQT-------V 224
YTSG+ G K V +S N++ + + + + A + + +
Sbjct: 182 YTSGSTGTPKGVRVSRHNLS-SFSDAWGKL-IGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 225 -DIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWE 268
+++ ++ ++ L T E+ VP + +
Sbjct: 240 GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLD 284
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 30.2 bits (69), Expect = 0.85
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 26/132 (19%)
Query: 172 YTSGTEGASKPVMLSHDNIT--FNAACIIQYFKLESA----ALSVISFLPLSHIAAQTVD 225
+TSGT G K V +SHDN+ N F + A SF D
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSF-----------D 200
Query: 226 IYSVM------TVAATLWFADKNALK--GSLINTLLEVRPHVFLAVPRVWEKIHEKLMAV 277
+ SVM + TL+ K + L T+ ++ ++ + P +
Sbjct: 201 L-SVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFC 259
Query: 278 GKQTTGVKRWIA 289
+ + +
Sbjct: 260 QAKMPALTHFYF 271
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 29.3 bits (65), Expect = 1.5
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 170 LVYTSGTEGASKPVMLSHDNITFNAA 195
+ + GT GA K V+ I +
Sbjct: 96 VYESGGTTGAPKYVVAYDAWIEALIS 121
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 29.4 bits (67), Expect = 1.5
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLESAALSVISFLPLSHIAAQTVDIYSVMT 231
YTSG+ G K V ++++ + ++ F L++ ++ P S + +DIY +
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQ-VFLNQAPFSFDLS-VMDIYPSLV 208
Query: 232 VAATLWFADKNALK--GSLINTLLEVRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIA 289
TLW DK+ + L +L + V+ + P E + +K ++
Sbjct: 209 TGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLF 268
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.5
Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 44/207 (21%)
Query: 104 EDDKQLEKILKVKAQCPKLKAIVQYEGKPDKP-GVISWDELME-LGRAAPDESLDRVLET 161
E Q + IL V + D P ++S +E+ + R+ T
Sbjct: 13 EHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 162 IATNECCTLVYTSGTEGASKPVMLSHD-NITFNAACIIQYFKLES--AALSVISFLPLSH 218
+ + E K V N F ++ K E ++ ++
Sbjct: 71 LLSK---------QEEMVQKFVEEVLRINYKF----LMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 219 IAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPRVWEKIHEKLMA-V 277
+++ V+ + L LLE+RP + + +
Sbjct: 118 RLYNDNQVFAKYNVS-------RLQPYLKLRQALLELRPAKNVLI-------DG--VLGS 161
Query: 278 GKQTTGVKRWIANYA-KSTSLQHYMAY 303
GK W+A S +Q M +
Sbjct: 162 GKT------WVALDVCLSYKVQCKMDF 182
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES----AALSVISF 213
YTSGT G K + +H NI + Y ++S +F
Sbjct: 614 YTSGTTGKPKGNITTHANIQ-GLVKHVDYMAFSDQDTFLSVSNYAF 658
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 29.0 bits (66), Expect = 2.1
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 172 YTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
YTSGT G K ML H I+ +
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTE 222
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 28.6 bits (65), Expect = 2.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 172 YTSGTEGASKPVMLSHDNI 190
YTSG+ G K V +S N+
Sbjct: 150 YTSGSTGNPKGVQISAANL 168
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 28.6 bits (65), Expect = 2.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 172 YTSGTEGASKPVMLSHDNIT 191
++SGT G K + +H IT
Sbjct: 171 FSSGTTGRPKAIACTHAGIT 190
>2z2f_A Lysozyme C-2; stomach lysozyme, 1,4-beta-N-acetylmuramidase C,
bacteriolytic enzyme, hydrolase; 1.50A {Bos taurus}
Length = 129
Score = 27.3 bits (60), Expect = 3.5
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 38 LAKAFLKLGLERYHS------VCII----GFN--APEWFYSDLGAIYAGGFAAGMYTTNS 85
LA+ KLGL+ Y +C+ +N A + S G++ NS
Sbjct: 8 LARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSS------ESTDYGIFQINS 61
Query: 86 PEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG 130
C + + C V + +E + C K IV +G
Sbjct: 62 KWWCNDGKTPNAVDGCHVSCSELMENDIAKAVAC--AKHIVSEQG 104
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
metallopeptidase, peptidoglycan hydrolase; 1.40A
{Escherichia coli} SCOP: d.65.1.3 PDB: 1u10_A
Length = 255
Score = 27.3 bits (60), Expect = 5.3
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 255 VRPHVFLAVPRVWEKIHEKLMAVGKQTTGVKRWIANYA 292
V V +W+ L+ + Q V R N A
Sbjct: 125 VSRDGKHVVSTLWKPEIFSLIKLAAQDKDVTRIFVNPA 162
>2vb1_A Lysozyme C; antimicrobial, triclinic HEWL, atomic resolution,
allergen, hydrolase, glycosidase, bacteriolytic enzyme;
HET: EDO; 0.65A {Gallus gallus} SCOP: d.2.1.2 PDB:
194l_A 1aki_A 1azf_A 1b0d_A* 1b2k_A 1bgi_A 1bhz_A 1bvk_C
1bvx_A 1bwh_A 1bwi_A 1bwj_A 1c08_C 1c10_A 1dpw_A 1dpx_A
1dqj_C 1e8l_A 1f0w_A 1f10_A ...
Length = 129
Score = 26.5 bits (58), Expect = 5.6
Identities = 20/94 (21%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 38 LAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 87
LA A + GL+ Y VC FN G G+ NS
Sbjct: 8 LAAAMKRHGLDNYRGYSLGNWVCAAKFESNFN-----TQATNRNTDGSTDYGILQINSRW 62
Query: 88 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 121
C N+C + L + C K
Sbjct: 63 WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAK 96
>1lsg_A Hen egg white lysozyme; fibrinogen, hybrid protein; 2.40A {Gallus
gallus} SCOP: d.2.1.2
Length = 144
Score = 27.0 bits (59), Expect = 5.8
Identities = 20/95 (21%), Positives = 26/95 (27%), Gaps = 15/95 (15%)
Query: 37 GLAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
LA A + GL+ Y VC FN G G+ NS
Sbjct: 8 ELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFN-----TQATNRNTDGSTDYGILQINSR 62
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 121
C N+C + L + C K
Sbjct: 63 WWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAK 97
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca
domestica} PDB: 2h5z_A* 3cb7_A
Length = 122
Score = 26.1 bits (57), Expect = 9.2
Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 17/102 (16%)
Query: 38 LAKAFLKLGLERYHS---VCII----GFN--APEWFYSDLGAIYAGGFAAGMYTTNSPEA 88
LA+ LG+ + CI + S+ G G++ N+
Sbjct: 8 LAREMYALGVPKSELPQWTCIAEHESSYRTNVVGPTNSN------GSNDYGIFQINNYYW 61
Query: 89 CLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG 130
C N C + D L + C + I +G
Sbjct: 62 CQPSNGRFSYNECHLSCDALLTDNISNSVTC--ARKIKSQQG 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,712,552
Number of extensions: 281162
Number of successful extensions: 750
Number of sequences better than 10.0: 1
Number of HSP's gapped: 715
Number of HSP's successfully gapped: 55
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)