RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2835
(305 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 103 bits (258), Expect = 2e-25
Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 13/256 (5%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y +L A L LG+++ V I PE + L G + ++ SP
Sbjct: 106 YRELHR-DVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSP 164
Query: 87 EACLHCLVTSDANICVVEDD-------KQLEKILKVKAQCPKLKAIVQYEGKPDKPGVIS 139
EA C++ S + + + D+ L+K + + P + ++ I
Sbjct: 165 EAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID 224
Query: 140 WDELMELGRAAPDE--SLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
W E +L E S + E + + ++YTSG+ G K V+ + AA
Sbjct: 225 WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATT 284
Query: 198 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALK---GSLINTLLE 254
+Y + + + +Y + AT + + + +
Sbjct: 285 FKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDK 344
Query: 255 VRPHVFLAVPRVWEKI 270
+ ++ P +
Sbjct: 345 HQVNILYTAPTAIRAL 360
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 87.2 bits (215), Expect = 9e-20
Identities = 32/258 (12%), Positives = 76/258 (29%), Gaps = 13/258 (5%)
Query: 27 YSDLGAIYAGGLAKAFL-KLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNS 85
Y +L +A+ +G+ + +V + PE + L G + ++ S
Sbjct: 93 YKELLE-EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 151
Query: 86 PEACLHCLVTSDANICVVEDDKQ--------LEKILKVKAQCPKLKAIVQYEGKPDKPGV 137
+ + D+ + + D+ + + P ++ ++ Y +
Sbjct: 152 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 211
Query: 138 ISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACI 197
++ + + + L+YTSG+ GA K V S A
Sbjct: 212 FHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLT 271
Query: 198 IQYFKLESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGS---LINTLLE 254
++Y + + I T +Y + + + + + E
Sbjct: 272 MRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDE 331
Query: 255 VRPHVFLAVPRVWEKIHE 272
+ F P +
Sbjct: 332 HKVTQFYVAPTALRLLKR 349
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 81.5 bits (200), Expect = 7e-18
Identities = 43/264 (16%), Positives = 90/264 (34%), Gaps = 3/264 (1%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y++ + LA+A + GL H + + N+ ++F LGA++ G A +
Sbjct: 50 YAEYFE-MSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 108
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
L+ + S + V K L+KIL V+ + P ++ I+ + K D G S +
Sbjct: 109 RELLNSMNISQPTVVFV-SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 167
Query: 147 GRAAPDESLDRVLETIATNE-CCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLES 205
D V E+ ++ ++ +SG+ G K V L H +
Sbjct: 168 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 227
Query: 206 AALSVISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265
+ + + + + +L + + L VP
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 266 VWEKIHEKLMAVGKQTTGVKRWIA 289
++ + + + + +
Sbjct: 288 LFSFFAKSTLIDKYDLSNLHEIAS 311
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 79.9 bits (196), Expect = 2e-17
Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 14/263 (5%)
Query: 27 YSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTTNSP 86
Y+++ A L LG+ V +GFN + G SP
Sbjct: 43 YAEVYQ-RARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 101
Query: 87 EACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMEL 146
+ + L ++ + + D L + ++ + ++ V + K + + + L E
Sbjct: 102 KEIAYILNHAEDKVL-LFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEE 160
Query: 147 GRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKLESA 206
C + YT+GT G K V+ SH + ++ +
Sbjct: 161 ADPVRVPERA----------ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS 210
Query: 207 ALSV-ISFLPLSHIAAQTVDIYSVMTVAATLWFADKNALKGSLINTLLEVRPHVFLAVPR 265
V + +P+ H+ A + + + A + + + E VP
Sbjct: 211 EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE-GVTFTAGVPT 269
Query: 266 VWEKIHEKLMAVGKQTTGVKRWI 288
VW + + L + G + ++R +
Sbjct: 270 VWLALADYLESTGHRLKTLRRLV 292
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 58.9 bits (141), Expect = 2e-10
Identities = 32/217 (14%), Positives = 72/217 (33%), Gaps = 9/217 (4%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
W Y +L A LA F KLG+++ V + N E+F G +
Sbjct: 50 HWSYRELDT-RADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPS 108
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
+ + ++A ++ D + Q P +I E
Sbjct: 109 HRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQ--------SKLPTLKNIIVAGEA 160
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYFKL 203
E + L + +++ L + G+ G SK + +HD+ ++ ++ L
Sbjct: 161 EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWL 220
Query: 204 ESAALSVISFLPLSHIAAQTVDIYSVMTVAATLWFAD 240
+ + + + + + + + V+ + +
Sbjct: 221 DHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 57.6 bits (138), Expect = 6e-10
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 23/178 (12%)
Query: 24 EWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGFAAGMYTT 83
+ Y +L A LA+ F++ G+ + V I+ + + F L + AGG +
Sbjct: 48 QLTYHELNV-KANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 106
Query: 84 NSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDEL 143
E + L S A + + + L +Q+ G+ + +
Sbjct: 107 YPKERIQYILDDSQARMLLTQKH------------LVHLIHNIQFNGQVEIFEEDTIKIR 154
Query: 144 MELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAACIIQYF 201
P +S D ++YTSGT G K ML H I+
Sbjct: 155 EGTNLHVPSKSTD----------LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL 202
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 56.6 bits (135), Expect = 1e-09
Identities = 24/185 (12%), Positives = 50/185 (27%), Gaps = 17/185 (9%)
Query: 17 IIGFNAPEWFYSDLGAIYAGGLAKAFLKLGLERYHSVCIIGFNAPEWFYSDLGAIYAGGF 76
+ +++L A +A GL V ++ N+ + + L G
Sbjct: 22 AVPARGLRLTHAELRA-RVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAV 80
Query: 77 AAGMYTTNSPEACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPG 136
A + + + V+ +Q+ + Q I+
Sbjct: 81 PALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAI---FQSGSGARIIFLGDLVRDGE 137
Query: 137 VISWDELMELGRAAPDESLDRVLETIATNECCTLVYTSGTEGASKPVMLSHDNITFNAAC 196
S+ +E + P + + YTSGT G K ++
Sbjct: 138 PYSYGPPIEDPQREPA-------------QPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 197 IIQYF 201
+
Sbjct: 185 MSTQV 189
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein
{Sandworm (Nereis diversicolor) [TaxId: 126592]}
Length = 174
Score = 29.6 bits (65), Expect = 0.31
Identities = 6/52 (11%), Positives = 14/52 (26%)
Query: 97 DANICVVEDDKQLEKILKVKAQCPKLKAIVQYEGKPDKPGVISWDELMELGR 148
D N + + + + G++S +E + G
Sbjct: 104 DTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAGS 155
>d1juga_ d.2.1.2 (A:) Lysozyme {Australian echidna (Tachyglossus
aculeatus) [TaxId: 9261]}
Length = 125
Score = 26.8 bits (59), Expect = 1.8
Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 38 LAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 87
L K + G+ Y VC +N G G+ NS
Sbjct: 8 LCKNLVAQGMNGYQHITLPNWVCTAFHESSYNT-----RATNHNTDGSTDYGILQINSRY 62
Query: 88 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 121
C N C + K L+ + +C K
Sbjct: 63 WCHDGKTPGSKNACNISCSKLLDDDITDDLKCAK 96
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 129
Score = 25.6 bits (56), Expect = 5.3
Identities = 20/94 (21%), Positives = 26/94 (27%), Gaps = 15/94 (15%)
Query: 38 LAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 87
LA A + GL+ Y VC FN G G+ NS
Sbjct: 8 LAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNT-----QATNRNTDGSTDYGILQINSRW 62
Query: 88 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPK 121
C N+C + L + C K
Sbjct: 63 WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAK 96
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 25.8 bits (55), Expect = 5.6
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 133 DKPGVISWDELMELGRAAPDESLDRVLETIATNECCTLVY 172
D G +S +E M L + + RV++ T+ + +
Sbjct: 28 DNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDF 67
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli
[TaxId: 562]}
Length = 64
Score = 23.9 bits (52), Expect = 7.8
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 75 GFAAGMYTTNSPEA-CLHCLVTSDANICVVEDDKQLEKILKV 115
G ++ P + C S N+C + + E++++
Sbjct: 16 GVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQK 57
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus mykiss)
[TaxId: 8022]}
Length = 129
Score = 24.9 bits (54), Expect = 8.2
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 38 LAKAFLKLGLERYHS------VCII----GFNAPEWFYSDLGAIYAGGFAAGMYTTNSPE 87
LA+A G++ Y VC+ +N G G++ NS
Sbjct: 8 LARALKASGMDGYAGNSLPNWVCLSKWESSYNT-----QATNRNTDGSTDYGIFQINSRY 62
Query: 88 ACLHCLVTSDANICVVEDDKQLEKILKVKAQCPKLKAIVQYEG 130
C N+C + + L L V +C K + ++ G
Sbjct: 63 WCDDGRTPGAKNVCGIRCSQLLTDDLTVAIRCAK-RVVLDPNG 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,138,496
Number of extensions: 51395
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 22
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)