BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2836
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 109/187 (58%)
Query: 6 LHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNA 65
L S + K P F+F VKFYPPDP +L EDITRY + LQL++D++ GRL C
Sbjct: 56 LDSAKEIKKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFAT 115
Query: 66 AAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVET 125
A LG+Y +Q ELGD++PE H +YV+D K+ QT +EEK+ME H+ + TP Q +
Sbjct: 116 LALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADL 175
Query: 126 AFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEG 185
FL A L YGVD KD G I LG+ +G+L + R R+ W +V I+Y+
Sbjct: 176 EFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKR 235
Query: 186 KMFIVHL 192
F + +
Sbjct: 236 SSFFIKI 242
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 109/187 (58%)
Query: 6 LHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNA 65
L S + K P F+F VKFYPPDP +L EDITRY + LQL++D++ GRL C
Sbjct: 73 LDSAKEIKKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFAT 132
Query: 66 AAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVET 125
A LG+Y +Q ELGD++PE H +YV+D K+ QT +EEK+ME H+ + TP Q +
Sbjct: 133 LALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADL 192
Query: 126 AFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEG 185
FL A L YGVD KD G I LG+ +G+L + R R+ W +V I+Y+
Sbjct: 193 EFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKR 252
Query: 186 KMFIVHL 192
F + +
Sbjct: 253 SSFFIKI 259
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 103/179 (57%)
Query: 14 KTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYI 73
K FSF VKFYPPDP +L EDITRY + LQL+ D++ GRL C A LG+Y
Sbjct: 66 KQVRSGAWHFSFNVKFYPPDPAQLSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYT 125
Query: 74 LQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAAC 133
+Q ELGD++P+E +Y+++ + T +E+K++E H+ + TP + E FL A
Sbjct: 126 VQSELGDYDPDECGSDYISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKK 185
Query: 134 LDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHL 192
L YGVD KD G +I LG+ +G+L + R R+ W +V I+Y+ F + +
Sbjct: 186 LSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIKI 244
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 103/179 (57%)
Query: 14 KTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYI 73
K FSF VKFYPPDP +L EDITRY + LQL+ D++ GRL C A LG+Y
Sbjct: 66 KQVRSGAWHFSFNVKFYPPDPAQLSEDITRYYLCLQLRDDIVSGRLPCSFVTLALLGSYT 125
Query: 74 LQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAAC 133
+Q ELGD++P+E +Y+++ + T +E+K++E H+ + TP + E FL A
Sbjct: 126 VQSELGDYDPDECGSDYISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKK 185
Query: 134 LDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHL 192
L YGVD KD G +I LG+ +G+L + R R+ W +V I+Y+ F + +
Sbjct: 186 LSMYGVDLHHAKDSEGVEIMLGVCASGLLIYRDRLRINRFAWPKVLKISYKRNNFYIKI 244
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 20 PLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
PL F FR KFYP D +L +DIT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 75 PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 134
Query: 79 GDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLRK 130
GDFN E H Y+A K+L ++ EE++ +HE+ + E +L+
Sbjct: 135 GDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI 194
Query: 131 AACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGKM 187
A L+ YGV+ +K+ G++++LG++ G+ + N R T + W +++NI++ K
Sbjct: 195 AQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKK 254
Query: 188 FIVHLVFHEDP 198
F++ + + P
Sbjct: 255 FVIKPIDKKAP 265
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 20 PLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
PL F FR KFYP D +L +DIT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 75 PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 134
Query: 79 GDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLRK 130
GDFN E H Y+A K+L ++ EE++ +HE+ + E +L+
Sbjct: 135 GDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI 194
Query: 131 AACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGKM 187
A L+ YGV+ +K+ G++++LG++ G+ + N R T + W +++NI++ K
Sbjct: 195 AQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKK 254
Query: 188 FIVHLVFHEDP 198
F++ + + P
Sbjct: 255 FVIKPIDKKAP 265
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 20 PLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
PL F FR KFYP D +L +DIT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 72 PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 131
Query: 79 GDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLRK 130
GDFN E H Y+A K+L ++ EE++ +HE+ + E +L+
Sbjct: 132 GDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKI 191
Query: 131 AACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGKM 187
A L+ YGV+ +K+ G++++LG++ G+ + N R T + W +++NI++ K
Sbjct: 192 AQDLEXYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKK 251
Query: 188 FIVHLVFHEDP 198
F++ + + P
Sbjct: 252 FVIKPIDKKAP 262
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KF+P D +L ++IT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 74 NPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAK 133
Query: 78 LGDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD+N E H Y+A+ ++L ++ EE++ +HE+ + E +L+
Sbjct: 134 YGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLK 193
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +K+ G +++LG++ G+ + + + T + W +++NI++ K
Sbjct: 194 IAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDK 253
Query: 187 MFIVHLVFHEDP 198
F++ + + P
Sbjct: 254 KFVIKPIDKKAP 265
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KF+P D +L ++IT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 76 NPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAK 135
Query: 78 LGDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD+N E H Y+A+ ++L ++ EE++ +HE+ + E +L+
Sbjct: 136 YGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLK 195
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +K+ G +++LG++ G+ + + + T + W +++NI++ K
Sbjct: 196 IAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDK 255
Query: 187 MFIVHLVFHEDP 198
F++ + + P
Sbjct: 256 KFVIKPIDKKAP 267
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KFYP D +L +DIT+ +LQ+K +L +YC P A LG+Y +Q +
Sbjct: 73 NPLQFKFRAKFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAK 132
Query: 78 LGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVET------------ 125
GD+N E H Y++ ++ I +++M+ H+ +DQ ++++
Sbjct: 133 FGDYNKEVHKSGYLSSERL-------IPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDN 185
Query: 126 ---AFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQ 179
+L+ A L+ YG++ +K+ G ++LG++ G+ + + + T + W +++
Sbjct: 186 AMLEYLKIAQDLEMYGINYFEIKNKKGTDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIR 245
Query: 180 NINYEGKMFIVHLVFHEDP 198
NI++ K F++ + + P
Sbjct: 246 NISFNDKKFVIKPIDKKAP 264
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KF+P D +L ++IT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 76 NPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAK 135
Query: 78 LGDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD+N E H Y+A+ ++L ++ EE++ +HE+ + E +L+
Sbjct: 136 YGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLK 195
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +K+ G +++LG++ G+ + + + T + W +++NI++ K
Sbjct: 196 IAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDK 255
Query: 187 MFIVHLVFHEDP 198
F++ + + P
Sbjct: 256 KFVIKPIDKKAP 267
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KF+P D +L ++IT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 76 NPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAK 135
Query: 78 LGDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD+N E H Y+A+ ++L ++ EE++ +HE+ + E +L+
Sbjct: 136 YGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLK 195
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +K+ G +++LG++ G+ + + + T + W +++NI++ K
Sbjct: 196 IAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDK 255
Query: 187 MFIVHLVFHEDP 198
F++ + + P
Sbjct: 256 KFVIKPIDKKAP 267
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KF+P D +L ++IT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 74 NPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAK 133
Query: 78 LGDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD+N E H Y+A+ ++L ++ EE++ +HE+ + E +L+
Sbjct: 134 YGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLK 193
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +K+ G +++LG++ G+ + + + T + W +++NI++ K
Sbjct: 194 IAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDK 253
Query: 187 MFIVHLVFHEDP 198
F++ + + P
Sbjct: 254 KFVIKPIDKKAP 265
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KF+P D +L ++IT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 74 NPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAK 133
Query: 78 LGDFNPEEHVGNYVADLKILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD+N E H Y+A+ ++L ++ EE++ +HE+ + E +L+
Sbjct: 134 YGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLK 193
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +K+ G +++LG++ G+ + + + T + W +++NI++ K
Sbjct: 194 IAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDK 253
Query: 187 MFIVHLVFHEDP 198
F++ + + P
Sbjct: 254 KFVIKPIDKKAP 265
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain
Length = 109
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 65/99 (65%)
Query: 33 DPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVA 92
DP +L EDITRY + LQL++D++ GRL C A LG+Y +Q ELGD++PE H +YV+
Sbjct: 5 DPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVS 64
Query: 93 DLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKA 131
D K+ QT +EEK+ME H+ + TP Q + FL A
Sbjct: 65 DFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENA 103
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 103/184 (55%), Gaps = 12/184 (6%)
Query: 19 DPLQFSFRVKFYPPDPFK-LKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+P+ F F KFYP + + L ++IT++ +LQ+K+ +L ++YC P A+ L +Y +Q +
Sbjct: 91 EPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAK 150
Query: 78 LGDFNPEEHVGNYVADLKILLKQTTYI--------EEKMMEFHEKLKDQTPEQVETAFLR 129
GD++P H ++A ++L K+ + EE++ ++ + + + ++ E +L+
Sbjct: 151 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 210
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGK 186
A L+ YGV+ +++ G ++ LG++ G+ + R T + W +++NI+Y K
Sbjct: 211 IAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDK 270
Query: 187 MFIV 190
F +
Sbjct: 271 EFTI 274
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 103/184 (55%), Gaps = 12/184 (6%)
Query: 19 DPLQFSFRVKFYPPDPFK-LKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+P+ F F KFYP + + L ++IT++ +LQ+K+ +L ++YC P A+ L +Y +Q +
Sbjct: 91 EPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAK 150
Query: 78 LGDFNPEEHVGNYVADLKILLKQTTYI--------EEKMMEFHEKLKDQTPEQVETAFLR 129
GD++P H ++A ++L K+ + EE++ ++ + + + ++ E +L+
Sbjct: 151 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 210
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGK 186
A L+ YGV+ +++ G ++ LG++ G+ + R T + W +++NI+Y K
Sbjct: 211 IAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDK 270
Query: 187 MFIV 190
F +
Sbjct: 271 EFTI 274
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 103/184 (55%), Gaps = 12/184 (6%)
Query: 19 DPLQFSFRVKFYPPDPFK-LKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+P+ F F KFYP + + L ++IT++ +LQ+K+ +L ++YC P A+ L +Y +Q +
Sbjct: 78 EPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAK 137
Query: 78 LGDFNPEEHVGNYVADLKILLKQTTYI--------EEKMMEFHEKLKDQTPEQVETAFLR 129
GD++P H ++A ++L K+ + EE++ ++ + + + ++ E +L+
Sbjct: 138 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 197
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGK 186
A L+ YGV+ +++ G ++ LG++ G+ + R T + W +++NI+Y K
Sbjct: 198 IAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDK 257
Query: 187 MFIV 190
F +
Sbjct: 258 EFTI 261
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 103/184 (55%), Gaps = 12/184 (6%)
Query: 19 DPLQFSFRVKFYPPDPFK-LKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+P+ F F KFYP + + L ++IT++ +LQ+K+ +L ++YC P A+ L +Y +Q +
Sbjct: 73 EPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAK 132
Query: 78 LGDFNPEEHVGNYVADLKILLKQTTYI--------EEKMMEFHEKLKDQTPEQVETAFLR 129
GD++P H ++A ++L K+ + EE++ ++ + + + ++ E +L+
Sbjct: 133 YGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLK 192
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGK 186
A L+ YGV+ +++ G ++ LG++ G+ + R T + W +++NI+Y K
Sbjct: 193 IAQDLEMYGVNYFTIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDK 252
Query: 187 MFIV 190
F +
Sbjct: 253 EFTI 256
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KFYP D +L ++IT YLQ+K +L +YC P + L +Y +Q
Sbjct: 74 NPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQAR 133
Query: 78 LGDFNPEEHVGNYVADLKILLKQTT--------YIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD NP H ++A+ ++L ++ T E+ + + ++ + E +L+
Sbjct: 134 HGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLK 193
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYL---WKQVQNINYEGK 186
A L+ YGV+ +++ +++LG++ G+ + + + T + W +++NI++ +
Sbjct: 194 IAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDR 253
Query: 187 MFIVHLVFHEDP 198
FI+ + + P
Sbjct: 254 KFIIKPIDKKAP 265
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYI- 104
+Y+Q + D+L+G + A + + Q + G N ++H ++ DLK L + Y+
Sbjct: 7 LYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFL-DLKDFLPK-EYVK 64
Query: 105 ---EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGV 139
E K+ + H+ + + + +++ A L TYGV
Sbjct: 65 QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGV 102
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYI- 104
+Y+Q + D+L+G + A + + Q + G N ++H ++ DLK L + Y+
Sbjct: 32 LYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFL-DLKDFLPK-EYVK 89
Query: 105 ---EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGV 139
E K+ + H+ + + + +++ A L TYGV
Sbjct: 90 QKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGV 127
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 29 FYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVG 88
FY ++ + +Y+Q + D+L+G + A + + Q + G N ++H
Sbjct: 169 FYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKA 228
Query: 89 NYVADLKILLKQTTYI----EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGV 139
++ DLK L + Y+ E K+ + H+ + + + +++ A L TYGV
Sbjct: 229 GFL-DLKDFLPK-EYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGV 281
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 29 FYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVG 88
FY ++ + +Y+Q + D+L+G + A + Y Q + G N ++H
Sbjct: 4 FYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKP 63
Query: 89 NYVADLKILLKQTTYI----EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGV 139
++ +LK L + YI E K+ H+ + + + + +++ A L TYGV
Sbjct: 64 GFL-ELKDFLPK-EYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGV 116
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYI- 104
+Y+Q + D+L+G + A + Y Q + G N ++H ++ +LK L + YI
Sbjct: 16 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFL-ELKDFLPK-EYIK 73
Query: 105 ---EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGV 139
E K+ H+ + + + + +++ A L TYGV
Sbjct: 74 QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGV 111
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYI- 104
+Y+Q + D+L+G + A + Y Q + G N ++H ++ +LK L + YI
Sbjct: 7 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFL-ELKDFLPK-EYIK 64
Query: 105 ---EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVD 140
E K+ H+ + + + + +++ A L TYGV
Sbjct: 65 QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVS 103
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYI- 104
+Y+Q + D+L+G + A + Y Q + G N ++H ++ +LK L + YI
Sbjct: 27 LYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFL-ELKDFLPK-EYIK 84
Query: 105 ---EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYG 138
E K+ H+ + + + + +++ A L TYG
Sbjct: 85 QKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG 121
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYI- 104
+Y+Q + D+L+G A + G + Q + G +H ++ DLK L + YI
Sbjct: 32 LYVQARDDILNGSHPVSFEKACEFGGFQAQIQFGPHVEHKHKPGFL-DLKEFLPK-EYIK 89
Query: 105 ----EEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGV 139
E+++ + H+ + + + + +++ A L TYGV
Sbjct: 90 QRGAEKRIFQEHKNCGEMSEIEAKVKYVKLARSLRTYGV 128
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 86 HVGNYVADLKILLKQTTYIEEKMMEF------HEKLKDQTPEQVETAFLRKAACLDTYGV 139
H+GNY +KQ +EK F H Q E+++ L+ AA + G+
Sbjct: 17 HIGNYFG----AIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAAAAFLSLGI 72
Query: 140 DPQ 142
DPQ
Sbjct: 73 DPQ 75
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 79 GDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACL 134
G ++PE+ Y+ DL+ ++K I EK++ F E+LK + FL + L
Sbjct: 232 GLYDPEK----YINDLRSIIKNXIIIVEKILGFQEELKLNSDGTTGYDFLNYSNLL 283
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 74 LQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEK 114
LQE + PE +GN++ D + +LK + + + EF+ +
Sbjct: 763 LQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNAR 803
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 74 LQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEK 114
LQE + PE +GN++ D + +LK + + + EF+ +
Sbjct: 740 LQERVLSTRPEFLIGNWIEDARTMLKDSDDWTKDLFEFNAR 780
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 78 LGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETA--FLRKAACLD 135
G F PE NY ++ ++++M L ++PE + A KAA L
Sbjct: 168 FGIFKPELTFANY--------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF 219
Query: 136 TYGVDPQPVKDHAGNQIYLGINHTGILTFLGN 167
+D + ++ + + HTGI FL N
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 114 KLKDQTPEQVETAFLRKAACLDTYGVDPQP 143
+ D P+ T LR+ CLDT+GV P+P
Sbjct: 340 NVTDMFPDLPFTDELRQRYCLDTWGVWPRP 369
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 114 KLKDQTPEQVETAFLRKAACLDTYGVDPQP 143
+ D P+ T LR+ CLDT+GV P+P
Sbjct: 337 NVTDXFPDLPFTDELRQRYCLDTWGVWPRP 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,799,027
Number of Sequences: 62578
Number of extensions: 288990
Number of successful extensions: 623
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 43
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)