Query psy2836
Match_columns 215
No_of_seqs 118 out of 944
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 18:08:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3530|consensus 100.0 6.7E-53 1.5E-57 376.0 19.0 199 2-200 63-261 (616)
2 KOG3527|consensus 100.0 4.3E-39 9.4E-44 296.7 11.5 195 2-197 84-278 (975)
3 KOG0792|consensus 100.0 9.1E-38 2E-42 293.0 12.7 200 2-201 76-284 (1144)
4 KOG3529|consensus 100.0 3.6E-33 7.7E-38 256.3 8.6 195 3-197 66-273 (596)
5 smart00295 B41 Band 4.1 homolo 99.9 3.6E-27 7.9E-32 191.5 12.9 140 3-142 58-207 (207)
6 PF00373 FERM_M: FERM central 99.9 1.2E-26 2.6E-31 174.8 12.1 110 33-142 1-126 (126)
7 KOG3531|consensus 99.9 1.4E-24 3.1E-29 200.1 -2.6 191 3-195 93-283 (1036)
8 KOG4261|consensus 99.9 2.3E-24 5E-29 197.3 -3.1 193 2-197 170-373 (1003)
9 KOG0248|consensus 99.7 1.2E-17 2.5E-22 152.2 4.8 172 22-194 675-861 (936)
10 KOG4371|consensus 99.6 2.4E-16 5.3E-21 148.7 7.2 184 18-201 585-792 (1332)
11 cd00836 FERM_C FERM_C domain. 99.6 1.8E-15 4E-20 108.5 7.7 69 136-204 1-69 (92)
12 PF09380 FERM_C: FERM C-termin 99.2 6.7E-11 1.4E-15 84.3 5.9 49 146-194 1-51 (90)
13 KOG3552|consensus 99.1 4.3E-10 9.2E-15 106.2 8.0 148 17-164 257-430 (1298)
14 KOG4371|consensus 98.5 1.3E-07 2.8E-12 90.7 4.1 167 19-189 114-303 (1332)
15 KOG3727|consensus 98.4 3.4E-06 7.3E-11 76.7 10.6 155 41-195 444-615 (664)
16 KOG4257|consensus 98.4 1.5E-06 3.3E-11 80.6 8.2 164 19-182 90-275 (974)
17 cd00435 ACBP Acyl CoA binding 98.2 1.6E-05 3.6E-10 56.0 8.7 81 46-138 4-85 (85)
18 KOG3531|consensus 98.0 9.9E-07 2.2E-11 83.2 0.3 187 2-190 230-418 (1036)
19 PF00887 ACBP: Acyl CoA bindin 98.0 4.7E-05 1E-09 53.8 7.4 76 47-134 5-82 (87)
20 PF09379 FERM_N: FERM N-termin 97.8 1.1E-05 2.4E-10 55.7 1.6 30 2-31 50-80 (80)
21 PTZ00458 acyl CoA binding prot 97.4 0.0014 3.1E-08 46.6 8.4 80 47-138 5-87 (90)
22 KOG3784|consensus 97.2 0.0011 2.4E-08 58.5 7.0 119 22-186 189-317 (407)
23 KOG4335|consensus 96.9 0.00011 2.4E-09 66.3 -2.2 148 20-168 326-496 (558)
24 COG4281 ACB Acyl-CoA-binding p 96.6 0.012 2.7E-07 40.1 6.6 79 45-135 4-82 (87)
25 KOG4335|consensus 96.1 0.0066 1.4E-07 55.2 3.9 148 19-167 197-390 (558)
26 KOG0817|consensus 95.5 0.17 3.6E-06 39.0 9.0 85 46-142 8-93 (142)
27 KOG3527|consensus 92.2 0.03 6.5E-07 54.1 -1.0 190 2-193 437-634 (975)
28 KOG3878|consensus 90.2 0.58 1.3E-05 40.9 5.0 66 58-133 50-116 (469)
29 KOG3727|consensus 88.3 0.049 1.1E-06 50.3 -2.9 77 2-79 239-316 (664)
30 PF02174 IRS: PTB domain (IRS- 88.3 2.5 5.5E-05 30.4 6.6 52 150-201 22-75 (100)
31 PF14317 YcxB: YcxB-like prote 86.2 1.3 2.9E-05 27.9 3.8 39 156-195 1-39 (62)
32 cd00824 PTBI IRS-like phosphot 79.7 5.7 0.00012 29.0 5.2 51 150-200 21-73 (104)
33 cd01202 FRS2 Fibroblast growth 78.2 7.8 0.00017 28.0 5.4 64 140-203 6-74 (102)
34 PF10756 bPH_6: Bacterial PH d 76.9 5.9 0.00013 26.5 4.4 41 154-195 4-44 (73)
35 smart00310 PTBI Phosphotyrosin 73.6 10 0.00022 27.3 5.1 52 150-201 20-73 (98)
36 PF00640 PID: Phosphotyrosine 73.2 23 0.0005 26.1 7.4 50 148-197 50-105 (140)
37 cd01203 DOK_PTB Downstream of 72.0 13 0.00027 27.2 5.2 51 150-200 21-73 (104)
38 PF14470 bPH_3: Bacterial PH d 70.2 20 0.00042 24.7 6.0 44 149-192 21-72 (96)
39 cd00934 PTB Phosphotyrosine-bi 63.6 37 0.0008 24.3 6.5 50 147-196 39-93 (123)
40 KOG4261|consensus 60.2 0.36 7.8E-06 46.4 -5.9 139 3-148 187-333 (1003)
41 smart00462 PTB Phosphotyrosine 58.8 47 0.001 24.3 6.5 49 147-195 41-94 (134)
42 cd01273 CED-6 CED-6 Phosphotyr 51.5 33 0.0007 26.2 4.6 37 148-184 53-91 (142)
43 PF10480 ICAP-1_inte_bdg: Beta 51.0 75 0.0016 25.7 6.6 55 123-183 87-143 (200)
44 cd01274 AIDA-1b AIDA-1b Phosph 48.7 39 0.00085 25.3 4.5 33 147-179 38-72 (127)
45 cd01215 Dab Disabled (Dab) Pho 43.5 37 0.00081 26.1 3.7 47 148-194 51-102 (139)
46 cd01267 CED6_AIDA1b Phosphotyr 42.9 54 0.0012 24.5 4.5 37 147-183 42-80 (132)
47 cd01268 Numb Numb Phosphotyros 42.5 46 0.001 25.5 4.1 36 148-183 48-85 (138)
48 PF06115 DUF956: Domain of unk 41.1 23 0.0005 26.3 2.2 30 151-182 26-57 (118)
49 cd01270 DYC-1 DYC-1 (DYB-1 bin 37.3 98 0.0021 23.8 5.2 48 146-193 39-88 (140)
50 PF08269 Cache_2: Cache domain 33.4 60 0.0013 22.4 3.3 48 108-155 23-72 (95)
51 cd01269 PLX Pollux (PLX) Phosp 29.5 1.5E+02 0.0033 22.3 4.9 50 147-196 40-94 (129)
52 PF08416 PTB: Phosphotyrosine- 28.3 2.6E+02 0.0056 21.0 6.3 57 150-206 40-104 (131)
53 cd01212 JIP JNK-interacting pr 28.1 84 0.0018 24.3 3.5 22 148-169 43-64 (148)
54 cd01216 Fe65 Fe65 Phosphotyros 24.1 1.6E+02 0.0035 21.9 4.3 46 148-193 38-87 (123)
55 COG4687 Uncharacterized protei 23.7 48 0.001 24.5 1.4 41 151-193 26-74 (122)
56 PHA01083 hypothetical protein 22.4 1.1E+02 0.0023 23.9 3.1 25 49-73 31-56 (149)
57 PRK10640 rhaB rhamnulokinase; 20.8 1.9E+02 0.004 26.6 4.9 74 41-115 385-463 (471)
No 1
>KOG3530|consensus
Probab=100.00 E-value=6.7e-53 Score=375.98 Aligned_cols=199 Identities=43% Similarity=0.787 Sum_probs=195.0
Q ss_pred CCCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCC
Q psy2836 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDF 81 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~ 81 (215)
++||||.|+|++|++..+|++|+||||||+.+|..|.++.||++||+|+|+|||+||++|+.+.|++||||++|+|+|||
T Consensus 63 ~hWLD~tK~I~kqvK~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDY 142 (616)
T KOG3530|consen 63 RHWLDPTKSIKKQVKIGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDY 142 (616)
T ss_pred ceecCcchhHHHHhccCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCCce
Q psy2836 82 NPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGI 161 (215)
Q Consensus 82 ~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~Gi 161 (215)
++..|+.+|+++..++|.+++.+|.+|.+.|++++|+++++||..||+.|+.|++||+..|.|++++|++..||+++.||
T Consensus 143 n~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGI 222 (616)
T KOG3530|consen 143 NEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGI 222 (616)
T ss_pred ChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeeeeEEecccccceeeeCcEEEEEeeecCCCcc
Q psy2836 162 LTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRT 200 (215)
Q Consensus 162 ~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~ 200 (215)
.||+...++..|-|++|.++.|++++|++++.+++++..
T Consensus 223 lvf~g~~kig~f~WpkI~KvdFk~kk~~L~v~edd~~~~ 261 (616)
T KOG3530|consen 223 LVFEGKKKIGLFFWPKITKVDFKGKKFTLVVSEDDDQGR 261 (616)
T ss_pred EEEECCceeeEEecchheEeeccCcEEEEEEeeccccCC
Confidence 999999999999999999999999999999999877753
No 2
>KOG3527|consensus
Probab=100.00 E-value=4.3e-39 Score=296.66 Aligned_cols=195 Identities=39% Similarity=0.691 Sum_probs=189.4
Q ss_pred CCCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCC
Q psy2836 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDF 81 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~ 81 (215)
+.|||+.+++++|++. .||.|.|.|||||++|.+|.++++|++++||+|+||+.||+||+.-.-..|++|.+|++.|||
T Consensus 84 ~~wlD~~k~i~k~vr~-~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdY 162 (975)
T KOG3527|consen 84 KNWLDPAKEIKKQVRS-FPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDY 162 (975)
T ss_pred ccccccchhhhccccc-CccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCccccchhhhhhhhhHhHHhHhccC
Confidence 6899999999999996 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCCce
Q psy2836 82 NPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGI 161 (215)
Q Consensus 82 ~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~Gi 161 (215)
++..|..+|++...+.|.+...++.++.+.|+..+||++++|+++||+.|.+|.+||+..+++||++|+.++||||++|+
T Consensus 163 d~ee~~~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~gl 242 (975)
T KOG3527|consen 163 DPEEHGSDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGL 242 (975)
T ss_pred CHHHcccchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccce
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeeeeEEecccccceeeeCcEEEEEeeecCC
Q psy2836 162 LTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHED 197 (215)
Q Consensus 162 ~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~ 197 (215)
.+|.+.-+++.|.|+.|.+++|.+.+|.|++.+.+-
T Consensus 243 liy~d~lrinrfawPKilKisykR~~FyiKirPge~ 278 (975)
T KOG3527|consen 243 LIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGEF 278 (975)
T ss_pred EEeechhhhccccCchhhhhccceeeeEEEecCCcc
Confidence 999999999999999999999999999999987743
No 3
>KOG0792|consensus
Probab=100.00 E-value=9.1e-38 Score=292.98 Aligned_cols=200 Identities=33% Similarity=0.555 Sum_probs=177.9
Q ss_pred CCCCCCCCccccccCCCC-CeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCC
Q psy2836 2 RVFPLHSTRLFPKTANVD-PLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGD 80 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~~~-~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd 80 (215)
..|+|+.|+|+||+.+.. +..|+||||||+++|..|+++.||++||+|+|.||+.||+||+.+.|+.||+|+.||++||
T Consensus 76 ~rWvdleK~lkkql~k~a~~p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gd 155 (1144)
T KOG0792|consen 76 IRWVDLEKPLKKQLIKVANPPLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGD 155 (1144)
T ss_pred cceeccchhHHHhhhccCCCceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcc
Confidence 479999999999987643 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccc--ccccccccccCh----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEE
Q psy2836 81 FNPEEHVGN--YVADLKILLKQT----TYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYL 154 (215)
Q Consensus 81 ~~~~~~~~~--yl~~~~~~p~~~----~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~l 154 (215)
|+...+... |++.....+.+. ++++++|.+.|++.+|+++.||+..||+.|++|++||.++|.++|..|.++.|
T Consensus 156 y~~~~s~~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~l 235 (1144)
T KOG0792|consen 156 YNQKQSQDGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINL 235 (1144)
T ss_pred hhhhcCCccchhccccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceee
Confidence 997666532 444333333333 48999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCceEEEc-CCeeeeEEecccccceeeeCcEEEEEeeec-CCCccc
Q psy2836 155 GINHTGILTFL-GNRRTTRYLWKQVQNINYEGKMFIVHLVFH-EDPRTK 201 (215)
Q Consensus 155 Gv~~~Gi~v~~-~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~-~~~~~~ 201 (215)
||+..||.|+. ++.....|+|.+|.+++++++.|-|....+ +.+|+.
T Consensus 236 Gi~~~Gi~V~~~~g~~~~~~~W~di~~is~~ks~~~le~~~~~~~~r~t 284 (1144)
T KOG0792|consen 236 GIARVGILVPGQNGRQSVKFPWGDIIKISFKKSTFGLEQRNKDSESRET 284 (1144)
T ss_pred eeeeceeEeeccCccccceechhhhhhhhcchhhhhhhhhhccccchhh
Confidence 99999999998 556789999999999999999999999877 334343
No 4
>KOG3529|consensus
Probab=99.98 E-value=3.6e-33 Score=256.26 Aligned_cols=195 Identities=25% Similarity=0.528 Sum_probs=180.5
Q ss_pred CCCCCCCccccc-cCCCCCeEEEEEEEEcCCCCC-CcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCC
Q psy2836 3 VFPLHSTRLFPK-TANVDPLQFSFRVKFYPPDPF-KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGD 80 (215)
Q Consensus 3 ~wl~~~~~l~~q-~~~~~~~~l~frvkfy~~~~~-~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd 80 (215)
.||..+++...| +....|++|+|++||||+++. .+.+++|.+|||+|+|..||++.++|+.|+.+.|||+++||.+||
T Consensus 66 ~wl~~d~~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gd 145 (596)
T KOG3529|consen 66 TWLKLDKKVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGD 145 (596)
T ss_pred chhhccchhhhhhcCCCCCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhcc
Confidence 699999999987 555667999999999999998 788999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccccccc--------ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeE
Q psy2836 81 FNPEEHVGNYVADLKILLK--------QTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQI 152 (215)
Q Consensus 81 ~~~~~~~~~yl~~~~~~p~--------~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~ 152 (215)
|+.+.|..+++.....+|. +...|+.+|...|..++|++..+|+++||.+++.+|+||+.+|+++++.|...
T Consensus 146 y~~~~~~~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~ 225 (596)
T KOG3529|consen 146 YDKETHKVGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDL 225 (596)
T ss_pred ccchhhhhhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCcc
Confidence 9999998888887766664 35789999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCceEEEcCCe---eeeEEecccccceeeeCcEEEEEeeecCC
Q psy2836 153 YLGINHTGILTFLGNR---RTTRYLWKQVQNINYEGKMFIVHLVFHED 197 (215)
Q Consensus 153 ~lGv~~~Gi~v~~~~~---~~~~~~w~~I~~~~~~~~~f~I~~~~~~~ 197 (215)
||||+.-|+.+|+... +-..|+|++|.|++|.+++|.|...++..
T Consensus 226 ~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf~~k~id~~~ 273 (596)
T KOG3529|consen 226 WLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKFHIKPIDKKA 273 (596)
T ss_pred ccccccCCccccccccCCCCCCCCCccccCCCCCCcccccCCCCCccc
Confidence 9999999999998764 34789999999999999999999998854
No 5
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.95 E-value=3.6e-27 Score=191.54 Aligned_cols=140 Identities=34% Similarity=0.581 Sum_probs=119.8
Q ss_pred CCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCc-chHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCC
Q psy2836 3 VFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKL-KEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDF 81 (215)
Q Consensus 3 ~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l-~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~ 81 (215)
.||++++++.++.....++.|+||+|||+++...+ .|+.+.+++|.|+++||++|++||+.+++++||||++|+++||+
T Consensus 58 ~~l~~~~~l~~~~~~~~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~ 137 (207)
T smart00295 58 HWLDPAKTLLDQDVKSEPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDY 137 (207)
T ss_pred eeCCCccCHHHhcCCCCCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 69999999999987656899999999999876544 46666679999999999999999999999999999999999999
Q ss_pred CCCCC-cccccccccccccC--------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceee
Q psy2836 82 NPEEH-VGNYVADLKILLKQ--------TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQ 142 (215)
Q Consensus 82 ~~~~~-~~~yl~~~~~~p~~--------~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f 142 (215)
++..+ ...+.....++|.. .+.|+++|.+.|+++.|+|+.+|+..||++|++||+||+++|
T Consensus 138 ~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 138 DEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred ChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 97765 22223333344543 567999999999999999999999999999999999999987
No 6
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.94 E-value=1.2e-26 Score=174.84 Aligned_cols=110 Identities=36% Similarity=0.634 Sum_probs=93.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCC-CCCCcccccccc-------cccc------
Q psy2836 33 DPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFN-PEEHVGNYVADL-------KILL------ 98 (215)
Q Consensus 33 ~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~-~~~~~~~yl~~~-------~~~p------ 98 (215)
||..+.|+.+++++|+|+|+||++|++||+.++|++||||++|+++||++ +..+..+++... .++|
T Consensus 1 ~p~~~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~ 80 (126)
T PF00373_consen 1 DPLHIDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLI 80 (126)
T ss_dssp SGGGTTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHH
Confidence 35568899999999999999999999999999999999999999999999 444444443221 1456
Q ss_pred --cChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceee
Q psy2836 99 --KQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQ 142 (215)
Q Consensus 99 --~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f 142 (215)
...++|+++|.+.|++++|+|+.+|+..||++|++||+||+++|
T Consensus 81 ~~~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 81 KKMKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp CCSTHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 35788999999999999999999999999999999999999998
No 7
>KOG3531|consensus
Probab=99.88 E-value=1.4e-24 Score=200.10 Aligned_cols=191 Identities=35% Similarity=0.619 Sum_probs=180.1
Q ss_pred CCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCC
Q psy2836 3 VFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFN 82 (215)
Q Consensus 3 ~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~ 82 (215)
.|||+.|+|.+||.+.....+.|-|+||++++..+.++-+|+++-+|++.|+..|++.|....|..|+++..|.+.||+.
T Consensus 93 ~wld~~kpi~rqi~~~~~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~ 172 (1036)
T KOG3531|consen 93 CWLDLEKPILRQIRRPKDVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFD 172 (1036)
T ss_pred EEecccchHHHHhcCccchhhheeecccCCCccccchhHHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchh
Confidence 59999999999999877888999999999999999999999999999999999999999999999999999999999993
Q ss_pred CCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCCceE
Q psy2836 83 PEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGIL 162 (215)
Q Consensus 83 ~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~Gi~ 162 (215)
. .....++....++|.+ ...+++|.+.|..+.|++++++-.+-|+++.++.+||+..+.++|-+|.++-+.|...||.
T Consensus 173 ~-~~d~~~l~~~~~~p~q-~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~ 250 (1036)
T KOG3531|consen 173 E-YLDREHLAHTRYLPNQ-DELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGIL 250 (1036)
T ss_pred c-cccceeeeeeecCchH-HHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhH
Confidence 3 3345688888888888 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeeeeEEecccccceeeeCcEEEEEeeec
Q psy2836 163 TFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFH 195 (215)
Q Consensus 163 v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~ 195 (215)
|++.-+++++|.|..|.+++|+.+.|.|.+.++
T Consensus 251 Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~ 283 (1036)
T KOG3531|consen 251 VFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPD 283 (1036)
T ss_pred HHhcceeccCCCHHHHHHHHHHHHhhhheeccc
Confidence 999999999999999999999999999998765
No 8
>KOG4261|consensus
Probab=99.87 E-value=2.3e-24 Score=197.33 Aligned_cols=193 Identities=18% Similarity=0.264 Sum_probs=170.9
Q ss_pred CCCCCCCCccccccCCCCCeEEEEEEEEcCCCCC-CcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCC
Q psy2836 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPF-KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGD 80 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~-~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd 80 (215)
.+|||++|.+.+|-.. ..+++.+|.|||-.+.+ ...||...+|+|.|+|++|+.|.+|++.+.|+++|+++.|..||+
T Consensus 170 l~wld~~rtlreqgid-e~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~~qshiq~g~ 248 (1003)
T KOG4261|consen 170 LNWLDHSRTLREQGID-EEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAGFQSHIQFGP 248 (1003)
T ss_pred hhhHHHhHHHHhcCcc-HHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhccccccccCC
Confidence 3799999999999775 47788888888866655 577899999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccccccccC---hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecC-----CCCeE
Q psy2836 81 FNPEEHVGNYVADLKILLKQ---TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDH-----AGNQI 152 (215)
Q Consensus 81 ~~~~~~~~~yl~~~~~~p~~---~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~-----~~~~~ 152 (215)
++.++|. +++....++|.. ... +.+|...|+.+.||+..+|+..|..+|++|++||++||-||.+ .++|.
T Consensus 249 ~~~~k~k-~~ld~kd~lpk~y~k~k~-ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVpr 326 (1003)
T KOG4261|consen 249 HNEDKHK-GFLDLKDFLPKEYVKQKG-EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPR 326 (1003)
T ss_pred chhhccc-cchhccccChHHHhcccc-chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccch
Confidence 9999998 788777777763 333 8999999999999999999999999999999999999999865 24899
Q ss_pred EEEEeCCceEEEcCCee--eeEEecccccceeeeCcEEEEEeeecCC
Q psy2836 153 YLGINHTGILTFLGNRR--TTRYLWKQVQNINYEGKMFIVHLVFHED 197 (215)
Q Consensus 153 ~lGv~~~Gi~v~~~~~~--~~~~~w~~I~~~~~~~~~f~I~~~~~~~ 197 (215)
+|||+.+.+...+.+++ +..+|...|..|.-+-+.|++.++++.+
T Consensus 327 lLgv~K~svmr~de~tk~il~ewpl~~V~rw~~s~~~ftldfgdyq~ 373 (1003)
T KOG4261|consen 327 LLGVTKESVMRVDEKTKEILQEWPLTTVRRWAASPKSFTLDFGDYQD 373 (1003)
T ss_pred hhhhhHHhhhhcchhhhhHhhhcchhHHHHhccCcceeccccccccc
Confidence 99999999988887765 5788889999999999999999998743
No 9
>KOG0248|consensus
Probab=99.69 E-value=1.2e-17 Score=152.21 Aligned_cols=172 Identities=14% Similarity=0.166 Sum_probs=144.3
Q ss_pred EEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccc--ccccccc
Q psy2836 22 QFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVA--DLKILLK 99 (215)
Q Consensus 22 ~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~--~~~~~p~ 99 (215)
.++.+.++|..+...-.++..|.|+|.|.-+.|..|++|.+.+.+..+|||.+|+.+||-+..-.. .-|. ...|.|.
T Consensus 675 ~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~~AaL~aq~~~gd~~~~~k~-q~l~qv~~rFyP~ 753 (936)
T KOG0248|consen 675 ALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPLSNQLCESLAALYAQMVFGDANQSLSD-QQFEFISQRFYPS 753 (936)
T ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcchHHHHHHHHHHHHHHhhccccccchH-HHHHHHHHHhChh
Confidence 466778888766666678899999999999999999999999999999999999999997633221 1121 1234453
Q ss_pred ------ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecC-----CCCeEEEEEeCCceEEEcCCe
Q psy2836 100 ------QTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDH-----AGNQIYLGINHTGILTFLGNR 168 (215)
Q Consensus 100 ------~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~-----~~~~~~lGv~~~Gi~v~~~~~ 168 (215)
..+.+..+|...|..++|+|+.|+..-||..|++||+||...|.+++- .+.=+||+||.+||.+.+.|+
T Consensus 754 ryrdga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvSlLd~N~ 833 (936)
T KOG0248|consen 754 KMLDVACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVSLLDRNH 833 (936)
T ss_pred hhhccCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcceeccccc
Confidence 257788999999999999999999999999999999999999999753 235699999999999999874
Q ss_pred --eeeEEecccccceeeeCcEEEEEeee
Q psy2836 169 --RTTRYLWKQVQNINYEGKMFIVHLVF 194 (215)
Q Consensus 169 --~~~~~~w~~I~~~~~~~~~f~I~~~~ 194 (215)
.+.+|+|+.+..++--...|++++..
T Consensus 834 M~vi~tYpYsSl~TFGG~qDDFMlVI~~ 861 (936)
T KOG0248|consen 834 MDVIRTYPYSSLSTFGGFQDDFMLVIIR 861 (936)
T ss_pred eeEEEEeeccccccccCcccceEEEEec
Confidence 67899999999999999999999854
No 10
>KOG4371|consensus
Probab=99.64 E-value=2.4e-16 Score=148.71 Aligned_cols=184 Identities=23% Similarity=0.401 Sum_probs=156.2
Q ss_pred CCCeEEEEEEEEcCCCCCCcchHHH---HHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccc
Q psy2836 18 VDPLQFSFRVKFYPPDPFKLKEDIT---RYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADL 94 (215)
Q Consensus 18 ~~~~~l~frvkfy~~~~~~l~~~~t---~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~ 94 (215)
.+|..+++||+||+..-....++.+ |.-+|+|.+.+++..+..-..+-+.+||++++|++.|+.+++.+..+|..+.
T Consensus 585 ~PP~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalqadsGNr~~n~~~gdysdP~ 664 (1332)
T KOG4371|consen 585 KPPYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQADSGNRPPNPVIGDYSDPQ 664 (1332)
T ss_pred CCCeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhhhhcCCCCCCccccccCChh
Confidence 5799999999999987666665565 9999999999999999777788899999999999999999988887888777
Q ss_pred cccccC------hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeee---ec--------CCCCeEEEEEe
Q psy2836 95 KILLKQ------TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPV---KD--------HAGNQIYLGIN 157 (215)
Q Consensus 95 ~~~p~~------~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v---~~--------~~~~~~~lGv~ 157 (215)
.+.|.. ..-+...+...|....|.+..+|...|+++++..|.|+++++.+ +. .-+.+.|+|+.
T Consensus 665 hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~gp~ 744 (1332)
T KOG4371|consen 665 HYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIGPM 744 (1332)
T ss_pred hhcccceecccchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCcccccc
Confidence 777653 22344555688888899999999999999999999999999876 21 12478999999
Q ss_pred CCceEEEcCC----eeeeEEecccccceeeeCcEEEEEeeecCCCccc
Q psy2836 158 HTGILTFLGN----RRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTK 201 (215)
Q Consensus 158 ~~Gi~v~~~~----~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~~ 201 (215)
++||.++.+. .++..|||..|....|.++.|.|....-++.+..
T Consensus 745 prgIsi~~p~~~a~~~~a~fPpa~v~~lqFd~k~f~Is~~g~p~~~i~ 792 (1332)
T KOG4371|consen 745 PRGISIYEPQGGAREVIAEFPPAQVQTLQFDKKRFVISAVGAPDEQIE 792 (1332)
T ss_pred ccceeccccCCCCccccCCCCCCCCCceeecCCCceeecCCCCCcceE
Confidence 9999999863 3578999999999999999999998877776655
No 11
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=99.61 E-value=1.8e-15 Score=108.49 Aligned_cols=69 Identities=26% Similarity=0.581 Sum_probs=62.3
Q ss_pred CCCceeeeeecCCCCeEEEEEeCCceEEEcCCeeeeEEecccccceeeeCcEEEEEeeecCCCcccccc
Q psy2836 136 TYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMM 204 (215)
Q Consensus 136 ~YG~~~f~v~~~~~~~~~lGv~~~Gi~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~~~~~ 204 (215)
+||+++|+|+|++|++++|||++.||.|++.+.++..|+|++|.+++|++|+|.|++.++++......+
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f 69 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTPINEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSF 69 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCEEEEEEcccceEEEEcCCEEEEEEecCcCceeeEEE
Confidence 699999999999999999999999999999888999999999999999999999999988644444333
No 12
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=99.16 E-value=6.7e-11 Score=84.30 Aligned_cols=49 Identities=22% Similarity=0.594 Sum_probs=46.4
Q ss_pred cCCCCeEEEEEeCCceEEEcCCeee--eEEecccccceeeeCcEEEEEeee
Q psy2836 146 DHAGNQIYLGINHTGILTFLGNRRT--TRYLWKQVQNINYEGKMFIVHLVF 194 (215)
Q Consensus 146 ~~~~~~~~lGv~~~Gi~v~~~~~~~--~~~~w~~I~~~~~~~~~f~I~~~~ 194 (215)
|++|.+++|||+++||.+++.+.++ ..|+|++|.+++|++++|.|++..
T Consensus 1 D~~~~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~k~F~I~~~~ 51 (90)
T PF09380_consen 1 DKNGSPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKKKKFTIEVRD 51 (90)
T ss_dssp ETTSBEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEETTEEEEEESS
T ss_pred CCCCCEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecccEEEEEEee
Confidence 6788999999999999999988887 999999999999999999999986
No 13
>KOG3552|consensus
Probab=99.05 E-value=4.3e-10 Score=106.19 Aligned_cols=148 Identities=22% Similarity=0.303 Sum_probs=106.1
Q ss_pred CCCCeEEEEEEEEcCCCCC-Cc-chHHHHHHHHHHHHHHhhccccccC--HHHHHHHHhHHHHHH-hCCCCCCCCccccc
Q psy2836 17 NVDPLQFSFRVKFYPPDPF-KL-KEDITRYQIYLQLKRDLLHGRLYCD--PNAAAQLGAYILQEE-LGDFNPEEHVGNYV 91 (215)
Q Consensus 17 ~~~~~~l~frvkfy~~~~~-~l-~~~~t~~l~ylQ~~~dvl~g~~~~~--~e~a~~LaaL~~Qa~-~Gd~~~~~~~~~yl 91 (215)
+...++..||+-|-|.++. .+ .|+.+..++|+|.+.||...|+-.. .+.|+.||||.|+.. +.+-.+.+....|+
T Consensus 257 ~sHk~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFapElk~elALRLAALhm~~~~~a~~q~qKislKyI 336 (1298)
T KOG3552|consen 257 GSHKLRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAPELKPELALRLAALHMHQHALANNQAQKISLKYI 336 (1298)
T ss_pred cccceeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhcccccchHHHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 3457888999999999886 33 4889999999999999999999886 789999999998765 33333345555676
Q ss_pred ccc----cccccC------hHHHHHHHHHHHHhhcC-------CCHHHHHHHHHHHHhcCCCCCceeeeeecCCC---Ce
Q psy2836 92 ADL----KILLKQ------TTYIEEKMMEFHEKLKD-------QTPEQVETAFLRKAACLDTYGVDPQPVKDHAG---NQ 151 (215)
Q Consensus 92 ~~~----~~~p~~------~~~~~~~i~~~h~~l~g-------~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~---~~ 151 (215)
... .|+|.. .+++.+.|..+-|.-+. ++.-+|+.+||++...||.||...|.+.-.+| ..
T Consensus 337 EkewGlE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se 416 (1298)
T KOG3552|consen 337 EKEWGLERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESE 416 (1298)
T ss_pred hhhhchhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhccccee
Confidence 532 455542 34555555544443322 46779999999999999999999999853332 44
Q ss_pred EEEEEeC-CceEEE
Q psy2836 152 IYLGINH-TGILTF 164 (215)
Q Consensus 152 ~~lGv~~-~Gi~v~ 164 (215)
+.|=|++ .||..+
T Consensus 417 ~~LLVgpryGiSqV 430 (1298)
T KOG3552|consen 417 RVLLVGPRYGISQV 430 (1298)
T ss_pred EEEEeccccchhHh
Confidence 4454554 377654
No 14
>KOG4371|consensus
Probab=98.46 E-value=1.3e-07 Score=90.66 Aligned_cols=167 Identities=18% Similarity=0.079 Sum_probs=100.5
Q ss_pred CCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhcccc--ccCHHHHHHHHhHHHHHHhCCCCCCCC-ccccccccc
Q psy2836 19 DPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRL--YCDPNAAAQLGAYILQEELGDFNPEEH-VGNYVADLK 95 (215)
Q Consensus 19 ~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~--~~~~e~a~~LaaL~~Qa~~Gd~~~~~~-~~~yl~~~~ 95 (215)
+-+.|+|||++|++++..+.++..|+-+|+|++++++.-.. +++++.|..+|+|++|+++||-.++.- ..+|.....
T Consensus 114 p~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr~~~e~a~~~~a~lalq~d~g~~~~g~s~~~qy~g~~~ 193 (1332)
T KOG4371|consen 114 PELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPRPAPEKAAEEYARLALQNDFGEEEEGESQFGQYGGTLS 193 (1332)
T ss_pred eeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCCcchHHHHHHHHhhhhcCccCcCCcccccccccCccee
Confidence 34679999999999999999999999999999999998433 677889999999999999998665443 344544322
Q ss_pred cc-cc----------ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEe----CCc
Q psy2836 96 IL-LK----------QTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGIN----HTG 160 (215)
Q Consensus 96 ~~-p~----------~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~----~~G 160 (215)
.- |- +...++..+.+..-+.-..+..++...=|-+-..|++-|...+..+|+ .+.|++ .+|
T Consensus 194 ~~~p~~~g~g~s~~n~l~~~~~~~nE~~~~~~~~~~~e~~r~~i~l~~~l~~~~~~~~~~~d~----a~~g~~~~~~a~~ 269 (1332)
T KOG4371|consen 194 GRDPFDEGSGNSNENQLREKKLHKNEQLAHRLSSSSEEIVRASIHLDEPLVMAQIPEEKPKDK----AIPGFDNAYDADF 269 (1332)
T ss_pred ccCccccccccccccccHHHHHhhhHHHHHHHHHHHHHhcccccCCCCCccccCCccccCccc----cccccCchhhhhh
Confidence 11 20 122222222222211222233444444444444455545444444432 456666 666
Q ss_pred eEEEcCC-----eeeeEEecccccceeeeCcEEE
Q psy2836 161 ILTFLGN-----RRTTRYLWKQVQNINYEGKMFI 189 (215)
Q Consensus 161 i~v~~~~-----~~~~~~~w~~I~~~~~~~~~f~ 189 (215)
+.-++.+ .......|-+.....++.++-.
T Consensus 270 ~~~c~~~h~g~~~~e~~Ls~~~~A~~~~~~~~a~ 303 (1332)
T KOG4371|consen 270 DNSCPLHHYGAVHLETGLSPLEEAQRALRANRAR 303 (1332)
T ss_pred hcCCCcccccchhhhccccHHHHHHHHHHhhhce
Confidence 6555432 1234556665555555544433
No 15
>KOG3727|consensus
Probab=98.37 E-value=3.4e-06 Score=76.71 Aligned_cols=155 Identities=13% Similarity=0.200 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHhhccccccC----HHHHHHHHhHHHHHHhC-CCC--CCCC-----cccccccccccccChHHHHHHH
Q psy2836 41 ITRYQIYLQLKRDLLHGRLYCD----PNAAAQLGAYILQEELG-DFN--PEEH-----VGNYVADLKILLKQTTYIEEKM 108 (215)
Q Consensus 41 ~t~~l~ylQ~~~dvl~g~~~~~----~e~a~~LaaL~~Qa~~G-d~~--~~~~-----~~~yl~~~~~~p~~~~~~~~~i 108 (215)
...+--+.-++.--..|+=..+ .|+-.-|+-|.||-.-+ +.. +... ..+|+++...-....+.+.++|
T Consensus 444 E~QYA~WMAaCrLASKGktMADSSY~sEV~sIlsfL~MQ~~n~g~~q~~~~~~~~d~np~~~vSPr~~rk~ksKQ~~~RI 523 (664)
T KOG3727|consen 444 EQQYARWMAACRLASKGKTMADSSYQSEVQSILSFLKMQRPNSGSRQAAPVKLPRDVNPECYVSPRYVRKLKSKQITQRI 523 (664)
T ss_pred HHHHHHHHHHhhHhhcCCccccccccHHHHHHHHHHHhcCCCCCCCcCCcccCcCCCCchhhcCHHHHHHHhhHHHHHHH
Confidence 3444447778888888887664 67777888888887654 221 1111 1234433211111345689999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCC-CeEEEEEeCCceEEEcC--CeeeeEEecccccceee--
Q psy2836 109 MEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAG-NQIYLGINHTGILTFLG--NRRTTRYLWKQVQNINY-- 183 (215)
Q Consensus 109 ~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~-~~~~lGv~~~Gi~v~~~--~~~~~~~~w~~I~~~~~-- 183 (215)
+++|...+.||-.||++.||+..++||.||+++|-|+-+.+ ..=+|||..+-+...+. +..+.++.+++++.|..
T Consensus 524 LEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsrKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNW 603 (664)
T KOG3727|consen 524 LEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSRKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNW 603 (664)
T ss_pred HHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcchHHHHhhhhhheeeeecccCCceeeeeecchhhhcccc
Confidence 99999999999999999999999999999999999976543 44679999999999885 45788899999887765
Q ss_pred eCcEEEEEeeec
Q psy2836 184 EGKMFIVHLVFH 195 (215)
Q Consensus 184 ~~~~f~I~~~~~ 195 (215)
.=+..+|++.+.
T Consensus 604 eir~v~IeF~de 615 (664)
T KOG3727|consen 604 EIRQVMIEFEDE 615 (664)
T ss_pred eeeEEEEEeccc
Confidence 345666666543
No 16
>KOG4257|consensus
Probab=98.35 E-value=1.5e-06 Score=80.56 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=124.5
Q ss_pred CCeEEEEEEEEcCCCCCCc--chHHHHHHHHHHHHHHhhccc-cccCHHHHHHHHhHHHHHHhCCCCCCC----Cccccc
Q psy2836 19 DPLQFSFRVKFYPPDPFKL--KEDITRYQIYLQLKRDLLHGR-LYCDPNAAAQLGAYILQEELGDFNPEE----HVGNYV 91 (215)
Q Consensus 19 ~~~~l~frvkfy~~~~~~l--~~~~t~~l~ylQ~~~dvl~g~-~~~~~e~a~~LaaL~~Qa~~Gd~~~~~----~~~~yl 91 (215)
..|++-+|+||-|.+...+ .|..|..+||.|+++|..+.. ..++.+.|++||+|-+.-.|.+.+-.. +.-++|
T Consensus 90 ~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~~~na~~kksh~e~l 169 (974)
T KOG4257|consen 90 DEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEHQHNAPGKKSHLEDL 169 (974)
T ss_pred hhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCcccCCCccccHHHH
Confidence 4799999999999887643 356677889999999998853 456899999999999999987754322 222344
Q ss_pred ccc----ccccc------ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCC--CeEEEEEeCC
Q psy2836 92 ADL----KILLK------QTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAG--NQIYLGINHT 159 (215)
Q Consensus 92 ~~~----~~~p~------~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~--~~~~lGv~~~ 159 (215)
... .++|+ .+..+.+.|...++++..+++.|....|.++....-.+..+.|.+.-..| .++-|.|+|+
T Consensus 170 ekevglksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh 249 (974)
T KOG4257|consen 170 EKEVGLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPH 249 (974)
T ss_pred HHHhhHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCc
Confidence 321 34454 46788899999999999999999999999999998888999999876554 7888999999
Q ss_pred -ceEEEcCCe--eeeEEeccccccee
Q psy2836 160 -GILTFLGNR--RTTRYLWKQVQNIN 182 (215)
Q Consensus 160 -Gi~v~~~~~--~~~~~~w~~I~~~~ 182 (215)
||.-..+.. +..--.+.+|..|.
T Consensus 250 ~Gisy~t~~~~~~t~laefkqi~sI~ 275 (974)
T KOG4257|consen 250 TGISYLTNERCDPTRLAEFKQIASIT 275 (974)
T ss_pred ccceeccCCCCChHHHHhhhhhheeE
Confidence 998875432 23333445555554
No 17
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=98.18 E-value=1.6e-05 Score=55.99 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=63.2
Q ss_pred HHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHH
Q psy2836 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVET 125 (215)
Q Consensus 46 ~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~ 125 (215)
-|.++...|.+-.-..+.++-++|=||--||..||++...+ +.+. ...+.=.+.|+++.|||+.+|+.
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P--~~~d----------~~~~~K~~AW~~l~~ms~~eA~~ 71 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERP--GMFD----------LKGRAKWDAWNSLKGMSKEDAMK 71 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCC--Cccc----------HhhHHHHHHHHHcCCCCHHHHHH
Confidence 36777777777667789999999999999999999984432 2221 12233467899999999999999
Q ss_pred HHHHHHhc-CCCCC
Q psy2836 126 AFLRKAAC-LDTYG 138 (215)
Q Consensus 126 ~yL~~~~~-l~~YG 138 (215)
.|++.+.+ +|.||
T Consensus 72 ~YV~~~~~l~~~~~ 85 (85)
T cd00435 72 AYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHHHhhccC
Confidence 99999987 47776
No 18
>KOG3531|consensus
Probab=98.05 E-value=9.9e-07 Score=83.22 Aligned_cols=187 Identities=5% Similarity=-0.267 Sum_probs=152.7
Q ss_pred CCCCCCCCccccccCC-CCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCC
Q psy2836 2 RVFPLHSTRLFPKTAN-VDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGD 80 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~-~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd 80 (215)
.-|+|.+++...|+.- ..-.+|.+..||+..++..+....+++.+|||.+++..-|.|.|+.|-++.-+.+..|+-.|+
T Consensus 230 h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~~g~~qdt~ef~~~~rd~ck~fwk~c 309 (1036)
T KOG3531|consen 230 HPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASRDECKNFWKIC 309 (1036)
T ss_pred chhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhheeccccccchhhhHHHHHHhHHHHHHHHhcc
Confidence 4688988888888552 345577889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-ccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCC
Q psy2836 81 FNPEEHV-GNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHT 159 (215)
Q Consensus 81 ~~~~~~~-~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~ 159 (215)
..++.=. .-|+++. ..|+..-.-.+.+...|+..+|+.+..++..-++...+.+.||+..+..++..+.+..+..-++
T Consensus 310 ve~h~ffr~~~~~~~-k~k~~~~S~gssfrysgrtqkq~~~y~re~~~k~~~f~r~~~~~~s~~r~~~ss~~~l~sd~~~ 388 (1036)
T KOG3531|consen 310 VEHHAFFRLVEEPKP-KPKTVFFSKGSSFRYSGRTQKQLLDYVREGGKKREPFERKHSKSHSTRRGLYSSPYGLVSDVPE 388 (1036)
T ss_pred ccccchhhhhcccCC-CCCceeecccchhhhcCcchhccchhhhhcccccchhhcccccccccchhhccCCchhhhhccc
Confidence 8765411 1233333 2333222234667888999999999999999999999999999999999998888888999999
Q ss_pred ceEEEcCCeeeeEEecccccceeeeCcEEEE
Q psy2836 160 GILTFLGNRRTTRYLWKQVQNINYEGKMFIV 190 (215)
Q Consensus 160 Gi~v~~~~~~~~~~~w~~I~~~~~~~~~f~I 190 (215)
|+.. ..=+..+.+.|-.+.++.+++.-+..
T Consensus 389 ~~~~-~sl~~~n~~~~~~~~~~~~ss~P~l~ 418 (1036)
T KOG3531|consen 389 QHRN-GSLYEANGTDSYNKHQNVHSSEPHIA 418 (1036)
T ss_pred cccc-cceeecccccCcccccccccCCceec
Confidence 9988 33356789999999999988776655
No 19
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=97.95 E-value=4.7e-05 Score=53.80 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHHHhhcccc--ccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHH
Q psy2836 47 YLQLKRDLLHGRL--YCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVE 124 (215)
Q Consensus 47 ylQ~~~dvl~g~~--~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~ 124 (215)
|..+...|-+..- .++.++-++|=||--||..||++...+ ..+ ....+.=.+.|++++|||+.+|+
T Consensus 5 F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P--~~~----------d~~~~~K~~AW~~l~gms~~eA~ 72 (87)
T PF00887_consen 5 FEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRP--GFF----------DIEGRAKWDAWKALKGMSKEEAM 72 (87)
T ss_dssp HHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CT--TTT----------CHHHHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCC--cch----------hHHHHHHHHHHHHccCCCHHHHH
Confidence 5555555555444 889999999999999999999984432 222 11223335789999999999999
Q ss_pred HHHHHHHhcC
Q psy2836 125 TAFLRKAACL 134 (215)
Q Consensus 125 ~~yL~~~~~l 134 (215)
..|++.+.++
T Consensus 73 ~~Yi~~v~~~ 82 (87)
T PF00887_consen 73 REYIELVEEL 82 (87)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 20
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=97.77 E-value=1.1e-05 Score=55.72 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=24.9
Q ss_pred CCCCCCCCccccccCC-CCCeEEEEEEEEcC
Q psy2836 2 RVFPLHSTRLFPKTAN-VDPLQFSFRVKFYP 31 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~-~~~~~l~frvkfy~ 31 (215)
.+||+++++|.+|+++ ..+++|+|||||||
T Consensus 50 ~~wL~~~k~l~~q~~~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 50 HHWLDLDKKLKKQLKKNNPPFTLYFRVKFYP 80 (80)
T ss_dssp EEEE-SSSBGGGSTBTSSSSEEEEEEESS--
T ss_pred ceeccCcccHHHHcCCCCCCEEEEEEEEECC
Confidence 4799999999999887 67999999999997
No 21
>PTZ00458 acyl CoA binding protein; Provisional
Probab=97.42 E-value=0.0014 Score=46.57 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=58.8
Q ss_pred HHHHHHHhhcccc--ccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHH
Q psy2836 47 YLQLKRDLLHGRL--YCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVE 124 (215)
Q Consensus 47 ylQ~~~dvl~g~~--~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~ 124 (215)
|.++...|-+-.- +++.++-++|=||--||..||++...+ +.+. -..+.=.+.|.++.|||+.+|+
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P--~~~d----------~~~raKw~AW~~l~~ms~~eA~ 72 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEP--SMFK----------YQDRKKYEAWKSIENLNREDAK 72 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCC--Cccc----------HHHHHHHHHHHHcCCCCHHHHH
Confidence 6677766654222 678999999999999999999976432 2111 1122235789999999999999
Q ss_pred HHHHHHHhcC-CCCC
Q psy2836 125 TAFLRKAACL-DTYG 138 (215)
Q Consensus 125 ~~yL~~~~~l-~~YG 138 (215)
..||+.+.++ |.|.
T Consensus 73 ~~YI~l~~~l~~~w~ 87 (90)
T PTZ00458 73 KRYVEIVTELFPNWE 87 (90)
T ss_pred HHHHHHHHHHhhccc
Confidence 9999999875 5553
No 22
>KOG3784|consensus
Probab=97.21 E-value=0.0011 Score=58.50 Aligned_cols=119 Identities=14% Similarity=0.241 Sum_probs=77.7
Q ss_pred EEEEEEEEcCCCCC--CcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCccccccccccccc
Q psy2836 22 QFSFRVKFYPPDPF--KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLK 99 (215)
Q Consensus 22 ~l~frvkfy~~~~~--~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~ 99 (215)
.|.+|.-+|..... .+.+.....++|.|+..|+-+|......+..-+|-+
T Consensus 189 ~l~LRk~~~ds~~e~~L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~s---------------------------- 240 (407)
T KOG3784|consen 189 ELLLRKWYWDSSRERALMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKS---------------------------- 240 (407)
T ss_pred cceeeeeeecchhhhHHhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHH----------------------------
Confidence 36667666654443 344556677889999988877754322221112222
Q ss_pred ChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeee----ecCCCCeEEEEEeCCceEEEc--CC--eeee
Q psy2836 100 QTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPV----KDHAGNQIYLGINHTGILTFL--GN--RRTT 171 (215)
Q Consensus 100 ~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v----~~~~~~~~~lGv~~~Gi~v~~--~~--~~~~ 171 (215)
.+ .++-+..||++|++|++||...|+- -.+.|.++.+-++.+-+...- ++ +...
T Consensus 241 -----------lq-------~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i 302 (407)
T KOG3784|consen 241 -----------LQ-------EEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEI 302 (407)
T ss_pred -----------HH-------HhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCcccee
Confidence 22 2345678999999999999999973 235678877777666665543 23 3457
Q ss_pred EEecccccceeeeCc
Q psy2836 172 RYLWKQVQNINYEGK 186 (215)
Q Consensus 172 ~~~w~~I~~~~~~~~ 186 (215)
.|.|..|+.|.-...
T Consensus 303 ~F~~trmr~Wrvte~ 317 (407)
T KOG3784|consen 303 AFRWTRMRCWRVTEE 317 (407)
T ss_pred EEEeeeeEeeeccHH
Confidence 899999999987654
No 23
>KOG4335|consensus
Probab=96.87 E-value=0.00011 Score=66.32 Aligned_cols=148 Identities=11% Similarity=0.061 Sum_probs=108.5
Q ss_pred CeEEEEEEEEcCCCCC-CcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccc--
Q psy2836 20 PLQFSFRVKFYPPDPF-KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKI-- 96 (215)
Q Consensus 20 ~~~l~frvkfy~~~~~-~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~-- 96 (215)
|-...=|-.+|+...+ .+.|+-..+++|.-+|.++|.|+|.......+.+|.+.++--++.++..+|+...+....+
T Consensus 326 p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~ 405 (558)
T KOG4335|consen 326 PGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEELKS 405 (558)
T ss_pred cchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCceeeehhhhhcccceeeccccccchhcccHHHhcc
Confidence 4333334445655554 6889999999999999999999999999999999999999999999988887666543221
Q ss_pred cccC------hHHHHHH-HHHHHHhh---cCCCHHHHH--HHHHHHHhcCCCCCceeeeeec--------CCCCeEEEEE
Q psy2836 97 LLKQ------TTYIEEK-MMEFHEKL---KDQTPEQVE--TAFLRKAACLDTYGVDPQPVKD--------HAGNQIYLGI 156 (215)
Q Consensus 97 ~p~~------~~~~~~~-i~~~h~~l---~g~s~~~A~--~~yL~~~~~l~~YG~~~f~v~~--------~~~~~~~lGv 156 (215)
+|.. ..-|.+. +...++.. -|++..+|+ ..+++.|..+|.||++++.-+| .+..+..+||
T Consensus 406 ~~~t~~~~~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~vqv 485 (558)
T KOG4335|consen 406 WDHTSPEEEEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYCIEIPSQGAEPAGPQDSAKGSPSDHSSSPAPVQV 485 (558)
T ss_pred cCCCCChhhcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHheeehhccccccCcccccCCCCCccccccccccc
Confidence 2221 2223332 55555543 577777764 6789999999999999987543 2347899999
Q ss_pred eCCceEEEcCCe
Q psy2836 157 NHTGILTFLGNR 168 (215)
Q Consensus 157 ~~~Gi~v~~~~~ 168 (215)
| +|+.++....
T Consensus 486 ~-k~l~~ls~q~ 496 (558)
T KOG4335|consen 486 N-KGLPKLSRQG 496 (558)
T ss_pred c-ccchhhccch
Confidence 9 8999997643
No 24
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=96.59 E-value=0.012 Score=40.07 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHH
Q psy2836 45 QIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVE 124 (215)
Q Consensus 45 l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~ 124 (215)
..|.|+..||-+=.-..+.++.++|=||.-|+..||-+.+++ +++.-. . +-=.+.|..++|.|+++|+
T Consensus 4 ~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekP--G~~d~~-------g---r~K~eAW~~LKGksqedA~ 71 (87)
T COG4281 4 TRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKP--GFFDIV-------G---RYKYEAWAGLKGKSQEDAR 71 (87)
T ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCC--Cccccc-------c---chhHHHHhhccCccHHHHH
Confidence 358999999977544567888999999999999999877764 333210 0 1124678999999999999
Q ss_pred HHHHHHHhcCC
Q psy2836 125 TAFLRKAACLD 135 (215)
Q Consensus 125 ~~yL~~~~~l~ 135 (215)
..||..+.+|.
T Consensus 72 qeYialVeeLk 82 (87)
T COG4281 72 QEYIALVEELK 82 (87)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 25
>KOG4335|consensus
Probab=96.06 E-value=0.0066 Score=55.15 Aligned_cols=148 Identities=17% Similarity=0.245 Sum_probs=102.9
Q ss_pred CCeEEEEEEEEcCCCCC-CcchHHHHHHHHHHHHHHhhccc--cccCHHHHHHHHhH-HHHHHhCCCCCCCCcccc----
Q psy2836 19 DPLQFSFRVKFYPPDPF-KLKEDITRYQIYLQLKRDLLHGR--LYCDPNAAAQLGAY-ILQEELGDFNPEEHVGNY---- 90 (215)
Q Consensus 19 ~~~~l~frvkfy~~~~~-~l~~~~t~~l~ylQ~~~dvl~g~--~~~~~e~a~~LaaL-~~Qa~~Gd~~~~~~~~~y---- 90 (215)
.|+.-.-|.++++-+-+ .+.++....+.|..++.+|+.++ ++|+.+++.+++|+ ++-.++|+|.+..+....
T Consensus 197 ~~~~~~~rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~ 276 (558)
T KOG4335|consen 197 EPFLQFRRNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLS 276 (558)
T ss_pred ccchHHhhhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccchhhhcchH
Confidence 45544456677776554 45556666778999999999998 88999999999999 789999999998875433
Q ss_pred ------cccccc------------cccC-hHHHHHHHHHHHHhhcCCC---HHHH-----HHHHHHHHhcCCCCCceeee
Q psy2836 91 ------VADLKI------------LLKQ-TTYIEEKMMEFHEKLKDQT---PEQV-----ETAFLRKAACLDTYGVDPQP 143 (215)
Q Consensus 91 ------l~~~~~------------~p~~-~~~~~~~i~~~h~~l~g~s---~~~A-----~~~yL~~~~~l~~YG~~~f~ 143 (215)
++.+.. .|.. ...| ..++.+|+.+.-.+ .-++ -.+|++.+-+.|.||..+|+
T Consensus 277 ~~~qs~f~~w~cs~~lslqlk~~h~p~~~v~~w-p~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~ 355 (558)
T KOG4335|consen 277 EKLQSFFPAWLCSRGLSLQLKLRHRPARAVPGW-PELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFH 355 (558)
T ss_pred HHHHHHhHHHHhhcchhhhhhhccCCccccccc-HHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhh
Confidence 332110 0111 2333 44677777764332 1122 25789999999999999986
Q ss_pred -eecC--CC-------CeEEEE-EeCCceEEEcCC
Q psy2836 144 -VKDH--AG-------NQIYLG-INHTGILTFLGN 167 (215)
Q Consensus 144 -v~~~--~~-------~~~~lG-v~~~Gi~v~~~~ 167 (215)
++|. +| ..+.+| |+..|+++.+..
T Consensus 356 eaR~n~L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss 390 (558)
T KOG4335|consen 356 EARDNPLQGFYHRGGRKSVSVASISLEGVHVVDSS 390 (558)
T ss_pred hhhhhhhccccccCCceeeehhhhhcccceeeccc
Confidence 3432 22 578899 999999999863
No 26
>KOG0817|consensus
Probab=95.47 E-value=0.17 Score=39.05 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=61.3
Q ss_pred HHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHH
Q psy2836 46 IYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVET 125 (215)
Q Consensus 46 ~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~ 125 (215)
-|-.+...+-+=-=.++.++.++|=||-=||..||++..++. ++.. ..+.=.+.|+.+.||++.+|+.
T Consensus 8 ~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg--~~d~----------~~k~Kw~AW~~l~~~s~~eA~~ 75 (142)
T KOG0817|consen 8 KFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPG--FFDE----------EGKAKWQAWNSLGGMSKEEAME 75 (142)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCc--hhhH----------HHHHHHHHHHhcCCCCHHHHHH
Confidence 355555544332223778999999999999999998877643 3321 1223346699999999999999
Q ss_pred HHHHHHhc-CCCCCceee
Q psy2836 126 AFLRKAAC-LDTYGVDPQ 142 (215)
Q Consensus 126 ~yL~~~~~-l~~YG~~~f 142 (215)
.|++.+.+ .|.||...=
T Consensus 76 ~Yv~~~~~l~~~~~~~~~ 93 (142)
T KOG0817|consen 76 AYVEKVEELIPKYGAEAE 93 (142)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 99999987 577876543
No 27
>KOG3527|consensus
Probab=92.16 E-value=0.03 Score=54.06 Aligned_cols=190 Identities=13% Similarity=0.191 Sum_probs=134.2
Q ss_pred CCCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCC
Q psy2836 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDF 81 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~ 81 (215)
|.|....+-+..++.. .++-+-+.++++.- +....+.-.+..-..+.+.+-++++-+.....-..|++++++-.+||-
T Consensus 437 r~~~~ni~~~~s~L~~-eDrDke~E~r~k~q-~~~s~dk~a~ee~~kerrrrelEer~~Ae~~~h~~ltsf~A~n~~g~~ 514 (975)
T KOG3527|consen 437 RVLGYNIKNIHSNLML-EDRDKEQEVILKSQ-PSISEDKHAREEEVKERRRRELEERTPAELSLHERLTSFAADNIFGDA 514 (975)
T ss_pred eecccccccccccccc-cchhhhhhhhcccC-Ccchhhhhcchhhccccccccccccccchhhhhhhcccchhhhhcccc
Confidence 5677777777777653 35556677777753 222333344555678889999999999988888999999999999984
Q ss_pred CCCCCcccccc---cccccccC-hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeee-ec--CCCCeEE-
Q psy2836 82 NPEEHVGNYVA---DLKILLKQ-TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPV-KD--HAGNQIY- 153 (215)
Q Consensus 82 ~~~~~~~~yl~---~~~~~p~~-~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v-~~--~~~~~~~- 153 (215)
+.+.....=+. .....+.. ...-...+...++..+|.+..+++-.+..-|-...+||...+.. .+ +.+.++-
T Consensus 515 ~~E~tdtkE~d~~sg~rvi~~~h~~~~~~~i~~l~e~~rs~s~setee~~~~r~~~k~~~Gi~~~~~e~~~~k~~~~~d~ 594 (975)
T KOG3527|consen 515 PAETTDTKELDKVSGPRVIRAYHSGETYKKIVNLSELMRSQSESETEEQFRDRCKHKALYGIHLFEAESDKDKEPEPVDR 594 (975)
T ss_pred chhhccccccccccCCcccccccCcccccccccchhhhccccccchhhhhhcccccccccccchhhhhcccccCcccccc
Confidence 43332111111 11111111 22334567888999999999999999999999999999999875 22 3333332
Q ss_pred EEEeCCceEEEcCCeeeeEEecccccceeeeCcEEEEEee
Q psy2836 154 LGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLV 193 (215)
Q Consensus 154 lGv~~~Gi~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~ 193 (215)
..+...++..+.+-.....+.|..|.+.+++...|.+.+.
T Consensus 595 ~~~~ee~ipeaEpv~~t~s~v~~ni~~ksy~~~~l~~dv~ 634 (975)
T KOG3527|consen 595 AEVGEEDIPEAEPVQKTHSFVWQNIITKSYREGYLSIDVK 634 (975)
T ss_pred hhcccccccccceeccccccccccccccccccccceeccC
Confidence 1122888999988888899999999999999999999987
No 28
>KOG3878|consensus
Probab=90.24 E-value=0.58 Score=40.86 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=53.2
Q ss_pred ccccCHHHHHHHHhHHHHHHhCCCCCCCC-cccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Q psy2836 58 RLYCDPNAAAQLGAYILQEELGDFNPEEH-VGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAAC 133 (215)
Q Consensus 58 ~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~-~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~ 133 (215)
-++++-|+-++|.||.-|+.+|.|+++.. ..++|.- +-+.....|+.+-.||+.+|+..|+.+.-+
T Consensus 50 a~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv----------~GnDr~~~W~~LG~~sre~AM~~FV~Lldr 116 (469)
T KOG3878|consen 50 AIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDV----------IGNDRQQHWQLLGEISREQAMEGFVDLLDR 116 (469)
T ss_pred ccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeec----------ccChHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 47889999999999999999999998764 3355432 234567789999999999999999887755
No 29
>KOG3727|consensus
Probab=88.28 E-value=0.049 Score=50.29 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCCCCCccccccCCCCCeEEEEEEEEcCC-CCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhC
Q psy2836 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPP-DPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELG 79 (215)
Q Consensus 2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~-~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~G 79 (215)
+-||+-+..+.+|-.+. --.+.+|.+||.- +....-+..-...+|.|+|.++|...+.|+++++..+||++.|+.+-
T Consensus 239 ~gwldSs~s~meq~~~e-~d~~~lrfk~~~ffdlnpkyd~vrinqlyeqaKwsiL~ee~~~teee~~mfaalq~~~~~~ 316 (664)
T KOG3727|consen 239 VGWLDSSRSLMEQGIRE-YDTLLLRFKYFTFFDLNPKYDQVRINQLYEQAKWSILLEELDCTEEEALMFAALQFQVNHQ 316 (664)
T ss_pred cCCchhhhHHHHccchH-HHHHHHHHhhhhhhhcccccceeeccccccchhHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 35888888888884431 1123345555431 11222234445689999999999999999999999999999998764
No 30
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=88.27 E-value=2.5 Score=30.36 Aligned_cols=52 Identities=4% Similarity=0.013 Sum_probs=44.2
Q ss_pred CeEEEEEeCCceEEEcC--CeeeeEEecccccceeeeCcEEEEEeeecCCCccc
Q psy2836 150 NQIYLGINHTGILTFLG--NRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTK 201 (215)
Q Consensus 150 ~~~~lGv~~~Gi~v~~~--~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~~ 201 (215)
.+.+|.|++..|.+.+. ...+..+|+..|.+.+..++.|.++....-+..+-
T Consensus 22 g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G 75 (100)
T PF02174_consen 22 GPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDGIFSFEAGRRCPTGEG 75 (100)
T ss_dssp EEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETTEEEEEESTTSTTCSE
T ss_pred EEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCCEEEEEECCcCCCCCc
Confidence 68999999999999765 45679999999999999999999999877555443
No 31
>PF14317 YcxB: YcxB-like protein
Probab=86.17 E-value=1.3 Score=27.88 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=31.5
Q ss_pred EeCCceEEEcCCeeeeEEecccccceeeeCcEEEEEeeec
Q psy2836 156 INHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFH 195 (215)
Q Consensus 156 v~~~Gi~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~ 195 (215)
++.+||.+...+ ....++|++|.++.-.++.|.|.+...
T Consensus 1 f~~~gi~~~~~~-~~~~~~w~~i~~v~e~~~~~~l~~~~~ 39 (62)
T PF14317_consen 1 FDEDGIIIESGN-GSSRIPWSDIKKVVETKDYFYLYLGKN 39 (62)
T ss_pred CCCCEEEEEECC-eEEEEEchheEEEEEeCCEEEEEECCC
Confidence 467888886644 357799999999999999999987654
No 32
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=79.72 E-value=5.7 Score=28.96 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=43.8
Q ss_pred CeEEEEEeCCceEEEcCC--eeeeEEecccccceeeeCcEEEEEeeecCCCcc
Q psy2836 150 NQIYLGINHTGILTFLGN--RRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRT 200 (215)
Q Consensus 150 ~~~~lGv~~~Gi~v~~~~--~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~ 200 (215)
.+.+|-++++++.+.+.+ .....+||..|....+.+..|+++....-..-+
T Consensus 21 G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~ 73 (104)
T cd00824 21 GSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDSNLFSFEAGRRCVTGE 73 (104)
T ss_pred eeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCCCEEEEEccCcCCCCC
Confidence 579999999999999876 466889999999999999999999987744443
No 33
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=78.21 E-value=7.8 Score=28.05 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=49.5
Q ss_pred eeeeee--cCCC---CeEEEEEeCCceEEEcCCeeeeEEecccccceeeeCcEEEEEeeecCCCccccc
Q psy2836 140 DPQPVK--DHAG---NQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNM 203 (215)
Q Consensus 140 ~~f~v~--~~~~---~~~~lGv~~~Gi~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~~~~ 203 (215)
..|.|. |.+| ...+|-|++.-+.++.++.....+||..|....+.+..|+++....-++.+-..
T Consensus 6 ~~F~V~~~~~~~~~~g~g~L~vt~~~L~l~~~~~~~~~WPl~~LRRYG~d~~~FsFEAGRRC~tGeG~f 74 (102)
T cd01202 6 NSFRVINVDDDGNELGSGWLELTRTELTLYISGKEPVVWPLLCLRRYGYNSDLFSFESGRRCQTGEGIF 74 (102)
T ss_pred cEEEEEEECCCCCeeeeEEEEecceEEEEEcCCCCEEEccHHHhHhhccCCCEEEEEccCcCCCCCCEE
Confidence 456653 2333 578999999999999877667899999999999999999999987744444333
No 34
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=76.93 E-value=5.9 Score=26.48 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=31.2
Q ss_pred EEEeCCceEEEcCCeeeeEEecccccceeeeCcEEEEEeeec
Q psy2836 154 LGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFH 195 (215)
Q Consensus 154 lGv~~~Gi~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~ 195 (215)
+-|+++||.+-+.- ....++|++|..+.+....-.+.+...
T Consensus 4 v~v~~~Gl~vr~~~-rt~~vpW~~I~~v~~~~~~~~v~~~~~ 44 (73)
T PF10756_consen 4 VEVDPDGLRVRNLF-RTRRVPWSEIAGVRFRRGRRWVRLDLR 44 (73)
T ss_pred EEEcCCcEEEEcCc-eeEEEChHHeEEEEccCCceEEEEECC
Confidence 56789999998776 568899999999998777654444433
No 35
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=73.58 E-value=10 Score=27.32 Aligned_cols=52 Identities=6% Similarity=0.008 Sum_probs=43.3
Q ss_pred CeEEEEEeCCceEEEcCC--eeeeEEecccccceeeeCcEEEEEeeecCCCccc
Q psy2836 150 NQIYLGINHTGILTFLGN--RRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTK 201 (215)
Q Consensus 150 ~~~~lGv~~~Gi~v~~~~--~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~~ 201 (215)
...+|-++++.|.+.+.+ .....+||..|....+++..|.++....-..-+-
T Consensus 20 G~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G 73 (98)
T smart00310 20 GSYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDKNFFFFEAGRRCVSGPG 73 (98)
T ss_pred eeEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCCCEEEEEccCcCCCCCC
Confidence 468999999999999854 4567899999999999999999999887554443
No 36
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=73.21 E-value=23 Score=26.14 Aligned_cols=50 Identities=8% Similarity=0.067 Sum_probs=38.4
Q ss_pred CCCeEEEEEeCCceEEEcCC--eeeeEEecccccceee----eCcEEEEEeeecCC
Q psy2836 148 AGNQIYLGINHTGILTFLGN--RRTTRYLWKQVQNINY----EGKMFIVHLVFHED 197 (215)
Q Consensus 148 ~~~~~~lGv~~~Gi~v~~~~--~~~~~~~w~~I~~~~~----~~~~f~I~~~~~~~ 197 (215)
.+.++.|.|+.+||.+.+.. +.+..++-.+|+=++. ..+-|.+...+++.
T Consensus 50 ~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~ 105 (140)
T PF00640_consen 50 KPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRS 105 (140)
T ss_dssp TSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSS
T ss_pred cCeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCC
Confidence 45899999999999999864 4567889998888887 34477775554433
No 37
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=72.02 E-value=13 Score=27.16 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=43.9
Q ss_pred CeEEEEEeCCceEEEcCC--eeeeEEecccccceeeeCcEEEEEeeecCCCcc
Q psy2836 150 NQIYLGINHTGILTFLGN--RRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRT 200 (215)
Q Consensus 150 ~~~~lGv~~~Gi~v~~~~--~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~ 200 (215)
.+.+|-|.++.+.+.+.. ++...+||.-|.+....++.|+++....-+..+
T Consensus 21 G~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~d~~~FsFEAGRrC~tGe 73 (104)
T cd01203 21 GSYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGRDKGKFSFEAGRRCTSGE 73 (104)
T ss_pred eeEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcccCCEEEEEecCcCCCCC
Confidence 689999999999999865 467899999999999999999999987744444
No 38
>PF14470 bPH_3: Bacterial PH domain
Probab=70.17 E-value=20 Score=24.70 Aligned_cols=44 Identities=2% Similarity=0.155 Sum_probs=35.4
Q ss_pred CCeEEEEEeCCceEEEcCC----eeeeEEecccccceeeeC----cEEEEEe
Q psy2836 149 GNQIYLGINHTGILTFLGN----RRTTRYLWKQVQNINYEG----KMFIVHL 192 (215)
Q Consensus 149 ~~~~~lGv~~~Gi~v~~~~----~~~~~~~w~~I~~~~~~~----~~f~I~~ 192 (215)
..+.++.++.+-|.++... .....++|++|.+++.++ .++.|+.
T Consensus 21 ~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~ 72 (96)
T PF14470_consen 21 SFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIET 72 (96)
T ss_pred CceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEE
Confidence 4678888999999998754 346899999999999997 5666665
No 39
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=63.58 E-value=37 Score=24.35 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=37.5
Q ss_pred CCCCeEEEEEeCCceEEEcCCe--eeeEEecccccceeee---CcEEEEEeeecC
Q psy2836 147 HAGNQIYLGINHTGILTFLGNR--RTTRYLWKQVQNINYE---GKMFIVHLVFHE 196 (215)
Q Consensus 147 ~~~~~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~~---~~~f~I~~~~~~ 196 (215)
..+.++.|-|++.||.+.+.++ .+..++...|.-++.. .+-|.+...+..
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~ 93 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPG 93 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCC
Confidence 4568999999999999999864 4678888888776665 346666665543
No 40
>KOG4261|consensus
Probab=60.19 E-value=0.36 Score=46.41 Aligned_cols=139 Identities=7% Similarity=-0.115 Sum_probs=89.1
Q ss_pred CCCCCCCccccccC----CCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHh
Q psy2836 3 VFPLHSTRLFPKTA----NVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78 (215)
Q Consensus 3 ~wl~~~~~l~~q~~----~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~ 78 (215)
+|+++.++..-+-. ...|-+|.| +|+-....+ .+.+....|.++++++..+..+..-+....... ..+..+
T Consensus 187 ~et~llRrk~f~sd~nvdsrdpvqlnl---lyvQ~rD~i-l~g~hpv~~~kA~e~a~~qshiq~g~~~~~k~k-~~ld~k 261 (1003)
T KOG4261|consen 187 EETLLLRRKFFFSDQNVDSRDPVQLNL---LYVQARDDI-LNGSHPVSFEKACEFAGFQSHIQFGPHNEDKHK-GFLDLK 261 (1003)
T ss_pred HHHHHHHHHHhhccccccccchHHhhh---hhhhhhccc-ccCcCchhHHHHHHHhccccccccCCchhhccc-cchhcc
Confidence 35555555544422 223444432 455333322 245666789999999999888876555544444 444444
Q ss_pred CCCCCCCCcccccccccccccC----hHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCC
Q psy2836 79 GDFNPEEHVGNYVADLKILLKQ----TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHA 148 (215)
Q Consensus 79 Gd~~~~~~~~~yl~~~~~~p~~----~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~ 148 (215)
|-.+.+.+.... ....+.|.. ..+ +..+...|+..++|+.-.+..-|.+..++..+||+.++-+..++
T Consensus 262 d~lpk~y~k~k~-ekKif~~~k~~~~~se-i~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~ 333 (1003)
T KOG4261|consen 262 DFLPKEYVKQKG-EKKIFQAHKNCGGMSE-IDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKE 333 (1003)
T ss_pred ccChHHHhcccc-chhhhhhhhhhcchhH-HHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHH
Confidence 444545554444 334455542 223 35678899999999999999999999999999999999876543
No 41
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=58.82 E-value=47 Score=24.34 Aligned_cols=49 Identities=8% Similarity=-0.012 Sum_probs=35.8
Q ss_pred CCCCeEEEEEeCCceEEEcCCe--eeeEEecccccceeee---CcEEEEEeeec
Q psy2836 147 HAGNQIYLGINHTGILTFLGNR--RTTRYLWKQVQNINYE---GKMFIVHLVFH 195 (215)
Q Consensus 147 ~~~~~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~~---~~~f~I~~~~~ 195 (215)
+.+.++.|-|+..||.+.+..+ .+..++...|.-.+.. .+-|.+...+.
T Consensus 41 ~~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~ 94 (134)
T smart00462 41 KEPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDP 94 (134)
T ss_pred CCCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCC
Confidence 3568899999999999998653 5678998888777665 33555554433
No 42
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=51.49 E-value=33 Score=26.18 Aligned_cols=37 Identities=5% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCCeEEEEEeCCceEEEcCCe--eeeEEecccccceeee
Q psy2836 148 AGNQIYLGINHTGILTFLGNR--RTTRYLWKQVQNINYE 184 (215)
Q Consensus 148 ~~~~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~~ 184 (215)
+..++.|-|+.+||.+.+..+ .+..++-.+|+=.+..
T Consensus 53 k~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d 91 (142)
T cd01273 53 KLQKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADD 91 (142)
T ss_pred cCcEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecC
Confidence 347899999999999998765 3456666666555543
No 43
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=51.01 E-value=75 Score=25.74 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCCceEEEcCCee--eeEEecccccceee
Q psy2836 123 VETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRR--TTRYLWKQVQNINY 183 (215)
Q Consensus 123 A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~Gi~v~~~~~~--~~~~~w~~I~~~~~ 183 (215)
-.+.+|+.+|++ |---|.. ....++++|++.||.|.+.+.. ..++|.-+|..+..
T Consensus 87 ~lI~~ID~aQq~---GkLP~v~---~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~ 143 (200)
T PF10480_consen 87 ELINYIDSAQQD---GKLPFVP---SDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVC 143 (200)
T ss_pred HHHHHHHHHhhc---CcCCCCC---CCCeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEE
Confidence 467889999864 2222321 2257889999999999987653 47888888886443
No 44
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=48.68 E-value=39 Score=25.35 Aligned_cols=33 Identities=6% Similarity=-0.001 Sum_probs=24.4
Q ss_pred CCCCeEEEEEeCCceEEEcCCee--eeEEeccccc
Q psy2836 147 HAGNQIYLGINHTGILTFLGNRR--TTRYLWKQVQ 179 (215)
Q Consensus 147 ~~~~~~~lGv~~~Gi~v~~~~~~--~~~~~w~~I~ 179 (215)
+...++.|-|+.+||.+.+..++ +..++-.+|+
T Consensus 38 ~k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~IS 72 (127)
T cd01274 38 ETIPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIR 72 (127)
T ss_pred CCCCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEE
Confidence 34578999999999999998653 4556554444
No 45
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=43.52 E-value=37 Score=26.05 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=31.5
Q ss_pred CCCeEEEEEeCCceEEEcCCee--eeEEecccccceee---eCcEEEEEeee
Q psy2836 148 AGNQIYLGINHTGILTFLGNRR--TTRYLWKQVQNINY---EGKMFIVHLVF 194 (215)
Q Consensus 148 ~~~~~~lGv~~~Gi~v~~~~~~--~~~~~w~~I~~~~~---~~~~f~I~~~~ 194 (215)
+..+++|-||.+||.|.+..++ +..++-..|+=++. .++.|.....+
T Consensus 51 kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~ 102 (139)
T cd01215 51 HKTRITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGE 102 (139)
T ss_pred ccceEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEc
Confidence 4578999999999999998653 34455444443332 34567766664
No 46
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=42.91 E-value=54 Score=24.47 Aligned_cols=37 Identities=8% Similarity=-0.055 Sum_probs=27.3
Q ss_pred CCCCeEEEEEeCCceEEEcCCe--eeeEEecccccceee
Q psy2836 147 HAGNQIYLGINHTGILTFLGNR--RTTRYLWKQVQNINY 183 (215)
Q Consensus 147 ~~~~~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~ 183 (215)
+++.++.|-|+.+||.+.+..+ .+..++-.+|+=++.
T Consensus 42 ~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~ 80 (132)
T cd01267 42 EKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQ 80 (132)
T ss_pred CCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEec
Confidence 3457899999999999999864 345666666665554
No 47
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=42.50 E-value=46 Score=25.46 Aligned_cols=36 Identities=8% Similarity=-0.072 Sum_probs=27.5
Q ss_pred CCCeEEEEEeCCceEEEcCCe--eeeEEecccccceee
Q psy2836 148 AGNQIYLGINHTGILTFLGNR--RTTRYLWKQVQNINY 183 (215)
Q Consensus 148 ~~~~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~ 183 (215)
+...+.|-||.+||.+.++.+ .+..++..+|+=.+.
T Consensus 48 k~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~ 85 (138)
T cd01268 48 KPVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAP 85 (138)
T ss_pred CCCEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEec
Confidence 457799999999999999865 456777776665554
No 48
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=41.13 E-value=23 Score=26.34 Aligned_cols=30 Identities=10% Similarity=0.337 Sum_probs=20.6
Q ss_pred eEEEEEeCCceEEEcCCe--eeeEEeccccccee
Q psy2836 151 QIYLGINHTGILTFLGNR--RTTRYLWKQVQNIN 182 (215)
Q Consensus 151 ~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~ 182 (215)
++++| -+|+.+|++.+ ....+||++|..+.
T Consensus 26 kimiG--DkaFEFyn~~n~~dyIQIPW~eI~~V~ 57 (118)
T PF06115_consen 26 KIMIG--DKAFEFYNDRNVEDYIQIPWEEIDYVI 57 (118)
T ss_pred eEEEc--ccceEeecCCChhhcEEeChhheeEEE
Confidence 44444 66888887654 34689999987654
No 49
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=37.28 E-value=98 Score=23.78 Aligned_cols=48 Identities=8% Similarity=0.349 Sum_probs=28.6
Q ss_pred cCCCCeEEEEEeCCceEEEcCCee--eeEEecccccceeeeCcEEEEEee
Q psy2836 146 DHAGNQIYLGINHTGILTFLGNRR--TTRYLWKQVQNINYEGKMFIVHLV 193 (215)
Q Consensus 146 ~~~~~~~~lGv~~~Gi~v~~~~~~--~~~~~w~~I~~~~~~~~~f~I~~~ 193 (215)
..+..++.|-||.+||.+.+..++ ...+.|.+-..+-..-.--.|-+.
T Consensus 39 ~~Kk~kV~l~VS~~Gv~v~d~k~~~~~~~~~~~~tk~li~~~~i~rISf~ 88 (140)
T cd01270 39 NIKKRKVTIHVSVDGVKVVLKKKKRKKKNWTWDESKILVMNHPIYRIFYV 88 (140)
T ss_pred CCCceeEEEEEecCcEEEEecccccccccccccCcccEEEecCeeEEEEe
Confidence 334468999999999999986532 234555544444333333333333
No 50
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=33.45 E-value=60 Score=22.40 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=24.9
Q ss_pred HHHHHHhhc-C-CCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEE
Q psy2836 108 MMEFHEKLK-D-QTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLG 155 (215)
Q Consensus 108 i~~~h~~l~-g-~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lG 155 (215)
|...+.+.. | +|.++|+...++....+..=|..+|-|-|.+|..+.-+
T Consensus 23 i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~~~~gY~fi~d~~g~~l~hp 72 (95)
T PF08269_consen 23 IESYYAQAQAGKLSEEEAQQQAREALRALRYGGDGYFFIYDMDGVVLAHP 72 (95)
T ss_dssp THHHHHC-STT-----TTHHHHHHHHHH--SBTTB--EEE-TTSBEEEES
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccCCCCeEEEEeCCCeEEEcC
Confidence 334445443 5 89999999999999888775566677777665444333
No 51
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=29.52 E-value=1.5e+02 Score=22.32 Aligned_cols=50 Identities=6% Similarity=-0.014 Sum_probs=37.9
Q ss_pred CCCCeEEEEEeCCceEEEcCCee--eeEEecccccceeeeC---cEEEEEeeecC
Q psy2836 147 HAGNQIYLGINHTGILTFLGNRR--TTRYLWKQVQNINYEG---KMFIVHLVFHE 196 (215)
Q Consensus 147 ~~~~~~~lGv~~~Gi~v~~~~~~--~~~~~w~~I~~~~~~~---~~f~I~~~~~~ 196 (215)
.+|....+-|+..||.+.++.++ ....++.+|+.-+... +.|-+-..+..
T Consensus 40 ~~nrtm~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~ 94 (129)
T cd01269 40 KDNRTMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESP 94 (129)
T ss_pred cCCcEEEEEEeccceEEEcCCcceEEEecCccccchhhcCCCCcceEEEEeccCC
Confidence 34778999999999999999874 4688899998876543 36666666544
No 52
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=28.26 E-value=2.6e+02 Score=20.96 Aligned_cols=57 Identities=7% Similarity=0.113 Sum_probs=41.8
Q ss_pred CeEEEEEeCCceEEEcCCee--eeEEecccccceeee------CcEEEEEeeecCCCcccccccc
Q psy2836 150 NQIYLGINHTGILTFLGNRR--TTRYLWKQVQNINYE------GKMFIVHLVFHEDPRTKNMMYS 206 (215)
Q Consensus 150 ~~~~lGv~~~Gi~v~~~~~~--~~~~~w~~I~~~~~~------~~~f~I~~~~~~~~~~~~~~~~ 206 (215)
..+.|-|+..||.+.+..++ ...||-+.|...+.. ++-|.+++.......+..-+|+
T Consensus 40 q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~~~~~~~~il~fV~r~~~~~~~~~H~Fq 104 (131)
T PF08416_consen 40 QEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADPDSRRYNSILGFVVRKPGSSKPNVHLFQ 104 (131)
T ss_dssp EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEETTTTEECBEEEEEEEETTCCCEEEEEEE
T ss_pred EEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccCCCCccceEEEEEEecCCCCCCcEEEEE
Confidence 67999999999999998653 478999999887542 2367777776655555546665
No 53
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.06 E-value=84 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=18.4
Q ss_pred CCCeEEEEEeCCceEEEcCCee
Q psy2836 148 AGNQIYLGINHTGILTFLGNRR 169 (215)
Q Consensus 148 ~~~~~~lGv~~~Gi~v~~~~~~ 169 (215)
....+.|-|+.+||.+.++.++
T Consensus 43 ~~~~v~L~VS~~Girl~D~~t~ 64 (148)
T cd01212 43 TPQTCILEISDRGLRMVDRSGP 64 (148)
T ss_pred CCcEEEEEEecCcEEEEecCCC
Confidence 3467999999999999998654
No 54
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.14 E-value=1.6e+02 Score=21.87 Aligned_cols=46 Identities=2% Similarity=-0.052 Sum_probs=31.9
Q ss_pred CCCeEEEEEeCCceEEEcCCe--eeeEEecccccceeeeC--cEEEEEee
Q psy2836 148 AGNQIYLGINHTGILTFLGNR--RTTRYLWKQVQNINYEG--KMFIVHLV 193 (215)
Q Consensus 148 ~~~~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~~~--~~f~I~~~ 193 (215)
++.++.|-|++.||.+.++.+ .+..++-..|+=++-.+ +.|.+...
T Consensus 38 ~~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~r~FafI~~ 87 (123)
T cd01216 38 DWKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDVRDFAFIMR 87 (123)
T ss_pred cCeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCCcEEEEEEE
Confidence 467899999999999999865 45677766666555432 45544444
No 55
>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.72 E-value=48 Score=24.48 Aligned_cols=41 Identities=15% Similarity=0.461 Sum_probs=25.3
Q ss_pred eEEEEEeCCceEEEcCCe--eeeEEecccccceeee------CcEEEEEee
Q psy2836 151 QIYLGINHTGILTFLGNR--RTTRYLWKQVQNINYE------GKMFIVHLV 193 (215)
Q Consensus 151 ~~~lGv~~~Gi~v~~~~~--~~~~~~w~~I~~~~~~------~~~f~I~~~ 193 (215)
.++|| ..|+.+|++.+ +...|||++|..+..+ .+.|.|...
T Consensus 26 kiliG--DkgfEFYn~~nv~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td 74 (122)
T COG4687 26 KILIG--DKGFEFYNDRNVEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTD 74 (122)
T ss_pred eEEEc--ccceeecCCCChhheeEecHHHhheeheeehhhhhcceEEEEEc
Confidence 44444 56777776543 4578999999765442 235666554
No 56
>PHA01083 hypothetical protein
Probab=22.44 E-value=1.1e+02 Score=23.86 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHhhcc-ccccCHHHHHHHHhHH
Q psy2836 49 QLKRDLLHG-RLYCDPNAAAQLGAYI 73 (215)
Q Consensus 49 Q~~~dvl~g-~~~~~~e~a~~LaaL~ 73 (215)
|...++..| +-+.+++.++.||..+
T Consensus 31 q~IS~~R~G~r~~i~de~A~~LAe~a 56 (149)
T PHA01083 31 QKISKMRTGVRTYISDEEAIFLAESA 56 (149)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 555678899 9999999999999775
No 57
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=20.81 E-value=1.9e+02 Score=26.55 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHH-hCCCCCCCCcccccc----cccccccChHHHHHHHHHHHHhh
Q psy2836 41 ITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE-LGDFNPEEHVGNYVA----DLKILLKQTTYIEEKMMEFHEKL 115 (215)
Q Consensus 41 ~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~-~Gd~~~~~~~~~yl~----~~~~~p~~~~~~~~~i~~~h~~l 115 (215)
.++.-+..|++.||+.-.+.+...++.-|+|..+++. .|.+........-++ ...+.|...++|..+.. .|+++
T Consensus 385 ga~s~~w~Qi~ADvlg~pV~~~~~ea~alGaa~~a~~a~G~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~-~~~~~ 463 (471)
T PRK10640 385 GCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTNFPLTTFTPNPDSEIARHVA-QFQSL 463 (471)
T ss_pred hhhhHHHHHHHHHHhCCCeeeCChhHHHHHHHHHHHHHcCCcCCHHHHHHHHHhcCCceEEcCCChHHHHHHHH-HHHHH
Confidence 3666678999999998766555445666777777664 576655322222222 24567888888877543 34444
Done!