RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2836
(215 letters)
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 194 bits (494), Expect = 5e-62
Identities = 77/186 (41%), Positives = 110/186 (59%)
Query: 19 DPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
P F+F VKFYPPDP +L EDITRY + LQL++D++ GRL C A LG+Y +Q EL
Sbjct: 86 VPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSEL 145
Query: 79 GDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYG 138
GD++PE H +YV+D K+ QT +EEK+ME H+ + TP Q + FL A L YG
Sbjct: 146 GDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYG 205
Query: 139 VDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDP 198
VD KD G I LG+ +G+L + R R+ W +V I+Y+ F + + E
Sbjct: 206 VDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQE 265
Query: 199 RTKNMM 204
+ ++ +
Sbjct: 266 QYESTI 271
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 175 bits (445), Expect = 8e-54
Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 12/204 (5%)
Query: 20 PLQFSFRVKFYPPDP-FKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
R KF+ D ++ + +Y+Q + D+L+G + A + + Q +
Sbjct: 159 HETLLLRRKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQF 218
Query: 79 GDFNPEEHVGNYVADLKILLKQ--TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDT 136
G N ++H ++ L K+ E K+ + H+ + + + +++ A L T
Sbjct: 219 GPHNEQKHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKT 278
Query: 137 YGVDPQPVKDHAGNQI-----YLGINHTGILTFLGNRRTT--RYLWKQVQNINYEGKMFI 189
YGV VK+ + LGI ++ + + ++ K F
Sbjct: 279 YGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSF- 337
Query: 190 VHLVFHEDPRTKNMMYSSYSKAFS 213
L F + + ++ + +
Sbjct: 338 -TLDFGDYQDGYYSVQTTEGEQIA 360
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 170 bits (431), Expect = 2e-52
Identities = 49/192 (25%), Positives = 103/192 (53%), Gaps = 12/192 (6%)
Query: 20 PLQFSFRVKFYPPDP-FKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
P+ F F KFYP + +L ++IT++ +LQ+K+ +L ++YC P A+ L +Y +Q +
Sbjct: 92 PVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKY 151
Query: 79 GDFNPEEHVGNYVADLKILLKQTT--------YIEEKMMEFHEKLKDQTPEQVETAFLRK 130
GD++P H ++A ++L K+ EE++ ++ + + + ++ E +L+
Sbjct: 152 GDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKI 211
Query: 131 AACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGKM 187
A L+ YGV+ +++ G ++ LG++ G+ + R T + W +++NI+Y K
Sbjct: 212 AQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKE 271
Query: 188 FIVHLVFHEDPR 199
F + + +
Sbjct: 272 FTIKPLDKKIDV 283
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 174 bits (442), Expect = 1e-51
Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 19 DPLQFSFRVKFYPPD-PFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
+PLQF FR KFYP D +L ++IT YLQ+K +L +YC P + L +Y +Q
Sbjct: 74 NPLQFKFRAKFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQAR 133
Query: 78 LGDFNPEEHVGNYVADLKILLKQTT--------YIEEKMMEFHEKLKDQTPEQVETAFLR 129
GD NP H ++A+ ++L ++ T E+ + + ++ + E +L+
Sbjct: 134 HGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLK 193
Query: 130 KAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGK 186
A L+ YGV+ +++ +++LG++ G+ + + + T + W +++NI++ +
Sbjct: 194 IAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDR 253
Query: 187 MFIVHLVF-HEDPRTKNMMYSSYSKAF 212
FI+ + +K
Sbjct: 254 KFIIKPIDKKAPDFVFFAPRVRVNKRI 280
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 160 bits (406), Expect = 7e-49
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 12/191 (6%)
Query: 20 PLQFSFRVKFYPPDPFK-LKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
PL F FR KFYP D + L +DIT+ +LQ+K +L+ +YC P A L +Y +Q +
Sbjct: 72 PLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKY 131
Query: 79 GDFNPEEHVGNYVADLKILLKQTT--------YIEEKMMEFHEKLKDQTPEQVETAFLRK 130
GDFN E H Y+A K+L ++ EE++ +HE+ + E +L+
Sbjct: 132 GDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKI 191
Query: 131 AACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGKM 187
A L+ YGV+ +K+ G++++LG++ G+ + N R T + W +++NI++ K
Sbjct: 192 AQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKK 251
Query: 188 FIVHLVFHEDP 198
F++ + + P
Sbjct: 252 FVIKPIDKKAP 262
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 156 bits (396), Expect = 2e-48
Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 12/197 (6%)
Query: 27 VKFYPPDP-FKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEE 85
+KF+ D ++ + +Y+Q + D+L+G + A + Y Q + G N ++
Sbjct: 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQK 60
Query: 86 HVGNYVADLKILLKQTT--YIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQP 143
H ++ L K+ E K+ H+ + + + + +++ A L TYGV
Sbjct: 61 HKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFL 120
Query: 144 VKDHAGNQI-----YLGINHTGILTFLGNRRTTR--YLWKQVQNINYEGKMFIVHLVFHE 196
VK+ + LGI ++ + + ++ K F L F +
Sbjct: 121 VKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSF--TLDFGD 178
Query: 197 DPRTKNMMYSSYSKAFS 213
+ ++ + +
Sbjct: 179 YQDGYYSVQTTEGEQIA 195
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 148 bits (374), Expect = 6e-45
Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 13/198 (6%)
Query: 27 VKFYPPDPF--KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPE 84
V + + ++ + +Y+Q + D+L+G + A + + Q + G N +
Sbjct: 11 VDLGTENLYFQSSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQ 70
Query: 85 EHVGNYVADLKILLKQ--TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQ 142
+H ++ L K+ E K+ + H+ + + + +++ A L TYGV
Sbjct: 71 KHKAGFLDLKDFLPKEYVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFF 130
Query: 143 PVKDHAGNQI-----YLGINHTGILTFLGNRRTT--RYLWKQVQNINYEGKMFIVHLVFH 195
VK+ + LGI ++ + + ++ K F L F
Sbjct: 131 LVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSF--TLDFG 188
Query: 196 EDPRTKNMMYSSYSKAFS 213
+ + ++ + +
Sbjct: 189 DYQDGYYSVQTTEGEQIA 206
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 127 bits (320), Expect = 9e-36
Identities = 27/204 (13%), Positives = 69/204 (33%), Gaps = 25/204 (12%)
Query: 20 PLQFSFRVKFYPPDP-FKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
P F R P + ++++ + ++ + + +LL G L + +LQ
Sbjct: 90 PQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVY 149
Query: 79 GDFNPEEHVGNYVADLKI--------LLKQTTYIEEKMMEFHEKLKDQTPEQVETA---- 126
G++ ++H ++ + + L + + +++ ++ L E
Sbjct: 150 GNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQR 209
Query: 127 -FLRKAACLDTYGV--------DPQPVKDHAGNQIYLGINHTGILTFLGNRRTT--RYLW 175
FL+ + TYG +H +Y+G+N G+ + +
Sbjct: 210 MFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKY 269
Query: 176 KQVQ-NINYEGKMFIVHLVFHEDP 198
+ F +H + ++
Sbjct: 270 GCFMWQLGDTDTCFQIHSMENKMS 293
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 86.5 bits (213), Expect = 5e-20
Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 40/233 (17%)
Query: 1 MRVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLY 60
V P +F F++ + K+ + ++ Q ++HG
Sbjct: 279 ADVLAKFEKLAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHP 338
Query: 61 CDPNAAAQLGAYILQEELGDFNPEEHVGNY-----VADLKILLKQTT------------- 102
L A LQ GD+ + + LK + Q+T
Sbjct: 339 APEENLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQ 398
Query: 103 -----------------YIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVK 145
+++ K + EQ ++ YG V+
Sbjct: 399 KVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVE 458
Query: 146 DHAGN---QIYLGINHTGILTFLGNRRTT--RYLWKQVQNINYEGKMFIVHLV 193
G +++LG++ + + + ++ + + +V
Sbjct: 459 CKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKIVV 511
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 83.7 bits (206), Expect = 3e-19
Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 24/226 (10%)
Query: 12 FPKTANVDPLQFSFRVKFYPPDPFKL--KEDITRYQIYLQLKRDLLHGRLY-CDPNAAAQ 68
+ ++ ++++ P D + ++ T Y QL+ D + A Q
Sbjct: 101 YECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQ 160
Query: 69 LGAYILQEELGDFNPEEHVGNYVADL------------KILLKQTT--YIEEKMMEFHEK 114
LG L+ D +L K + + + + + ++
Sbjct: 161 LGCLELRRFFKDMPHNALDKKSNFELLEKEVGLDLFFPKQMQENLKPKQFRKMIQQTFQQ 220
Query: 115 LKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIY--LGINHTGI--LTFLGNRRT 170
E+ F A + + G I L I GI LT + T
Sbjct: 221 YASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQLTSQDAKPT 280
Query: 171 TRYLWKQVQNINY---EGKMFIVHLVFHEDPRTKNMMYSSYSKAFS 213
+KQ+++I E ++ L P+ ++ SS ++A +
Sbjct: 281 CLAEFKQIRSIRCLPLEEGQAVLQLGIEGAPQALSIKTSSLAEAEN 326
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 79.6 bits (195), Expect = 2e-17
Identities = 27/213 (12%), Positives = 65/213 (30%), Gaps = 19/213 (8%)
Query: 20 PLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDP-NAAAQLGAYILQEEL 78
P + FR + + P ++++ IY Q+ R + G C+ + A+L + +
Sbjct: 347 PWRLFFRKEVFTPWHNPSEDNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVDY 406
Query: 79 GDFNPEEHVGN---------YVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLR 129
G E + + + LK L K + + ++V+ +
Sbjct: 407 GSEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVN 466
Query: 130 KAA-CLDTYGVDPQPVKDHA-----GNQIYLGINHTGILTF-LGNRRTTRYLWKQVQNIN 182
A + + + + +N TG+ + + ++ ++
Sbjct: 467 YARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELSFPEIMAVS 526
Query: 183 Y--EGKMFIVHLVFHEDPRTKNMMYSSYSKAFS 213
KM + SS ++
Sbjct: 527 SSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIR 559
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 74.1 bits (181), Expect = 7e-16
Identities = 31/229 (13%), Positives = 69/229 (30%), Gaps = 27/229 (11%)
Query: 12 FPKTANVDPLQFSFRVKFYPPDPFKL--KEDITRYQIYLQLKRDLLHGRL-YCDPNAAAQ 68
F + ++ R+++ P ++ T Y Q+K D + D A +
Sbjct: 81 FELAHPPEEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALK 140
Query: 69 LGAYILQEELGDFNPEEHVGNYVADL------------KILLKQTT--YIEEKMMEFHEK 114
LG ++ G+ ++ K LL + + + + +
Sbjct: 141 LGCLEIRRSYGEMRGNALEKKSNYEVLEKDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQ 200
Query: 115 LKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGI---NHTGILTFLGNRRTT 171
+ E+ F + + + + + I + + GI
Sbjct: 201 FANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISYLTDKGANP 260
Query: 172 RYL--WKQVQNINYE-----GKMFIVHLVFHEDPRTKNMMYSSYSKAFS 213
+L + QVQ I Y + ++ L P + S + A +
Sbjct: 261 THLADFNQVQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVTAPSLTIAEN 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 7e-05
Identities = 27/227 (11%), Positives = 55/227 (24%), Gaps = 54/227 (23%)
Query: 8 STRLFPKTANVDPLQFSFRVKFYPP-----DPF-------KLKEDITRYQIYLQLKRDLL 55
L K + P P +P +++ + + + + D L
Sbjct: 303 VKSLLLKYLDCRPQDL-------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 56 HGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMME-FHEK 114
I++ L P E+ + L + +I ++
Sbjct: 356 T---------------TIIESSLNVLEPAEYRKMFD-RLSVFPPS-AHIPTILLSLIWFD 398
Query: 115 LKDQTPEQVETAFLRKAACL-----DTYGV-DPQ-PVKDHAGNQIYLGINHTGILTFLGN 167
+ V + + T + +K N+ L H I+ N
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL---HRSIVDHY-N 454
Query: 168 RRTTRYLWKQVQNI--NYEGKMFIVHLVFHEDPRTKNMMYSSYSKAF 212
T + Y F H+ H + + F
Sbjct: 455 IPKTFDSDDLIPPYLDQY----FYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 34.4 bits (78), Expect = 0.023
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 32/126 (25%)
Query: 74 LQEELGDFNPEEHVGNYVA-------DLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETA 126
++ E P Y+ D ++ K + ++ + L + P +
Sbjct: 98 IKTEQRQ--PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 127 F---------LRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQ 177
+ CL V+ +I+ +N L N + + +
Sbjct: 156 DGVLGSGKTWVALDVCLS------YKVQCKMDFKIFW-LN-------LKNCNSPETVLEM 201
Query: 178 VQNINY 183
+Q + Y
Sbjct: 202 LQKLLY 207
Score = 31.4 bits (70), Expect = 0.25
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 22/119 (18%)
Query: 22 QFSFRVKFYPPDPFKLKEDITRYQIYL--------QLKRDLLHGRLYCDPNAAAQLGAYI 73
++ F D D Y ++ +R L ++ D L I
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRMVFLDFRF---LEQKI 507
Query: 74 LQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAA 132
+ +N + N + LK YI + ++ + + FL K
Sbjct: 508 RHDSTA-WNASGSILNTLQQLKFYKP---YICDNDPKYERLVNA-----ILD-FLPKIE 556
Score = 29.1 bits (64), Expect = 1.2
Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 52/200 (26%)
Query: 32 PDPFKLKEDITRYQIYLQLKRDL----------LHGRLYCDPNAAAQLGAYILQ-EELGD 80
F K +++R Q YL+L++ L + G L + + ++
Sbjct: 123 NQVFA-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQC 178
Query: 81 FNPEE----HVGNY---VADLKILLKQTTYIEEKMMEFHEKLKD--QTPEQVETAFLR-- 129
+ ++ N L++L K I+ + + ++ R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 130 ----KAACLDTYGVDPQPVKDHAGNQIYLGINHTGIL-TFLGNRR---TTRYLWKQVQNI 181
CL V + + + F + + TTR+ KQV +
Sbjct: 239 KSKPYENCLL--------VLLN--------VQNAKAWNAFNLSCKILLTTRF--KQVTDF 280
Query: 182 NYEGKMFIVHLVFHEDPRTK 201
+ L H T
Sbjct: 281 LSAATTTHISLDHHSMTLTP 300
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.25
Identities = 39/263 (14%), Positives = 73/263 (27%), Gaps = 103/263 (39%)
Query: 7 HSTRLFPKTANVDPLQFSFRVKFY--------PPDPFK-LKEDITRYQIYLQLKRDLLH- 56
++ LF + + D F+ L++ YQ Y L DL+
Sbjct: 141 SNSALF-RAVGEG------NAQLVAIFGGQGNTDDYFEELRD---LYQTYHVLVGDLIKF 190
Query: 57 ---------------GRLY---CD-------PNAA------------------AQLGAYI 73
+++ + P+ QL Y+
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 74 LQEELGDFNPEE----------HVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQV 123
+ +L F P E H V + I + E F + +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS---WE---SFFV----SVRKAI 300
Query: 124 ETAFLRKAACLDTYG---VDPQPVKDHAGNQIYL--------GINHTGILTFLGNRRTTR 172
F C + Y + P ++D N + + + ++ +T
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV--NKTNS 358
Query: 173 YL--WKQVQ--NINYEG-KMFIV 190
+L KQV+ +N G K +V
Sbjct: 359 HLPAGKQVEISLVN--GAKNLVV 379
Score = 29.2 bits (65), Expect = 1.1
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 27/108 (25%)
Query: 5 PLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIY----LQLKRDLLHGRLY 60
P HS L P + ++ V F D ++ I Y + L++ + R+
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKD---IQ--IPVYDTFDGSDLRVLSGSISERIV 480
Query: 61 ----CDP---NAAAQLGA-YILQEELGDFNPEEHVGNYVADLKILLKQ 100
P Q A +IL DF P G + L +L +
Sbjct: 481 DCIIRLPVKWETTTQFKATHIL-----DFGP----GG-ASGLGVLTHR 518
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.46
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 19/47 (40%)
Query: 113 EKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHT 159
EK Q ++++ + L Y D P L I T
Sbjct: 18 EK---QALKKLQAS-------LKLYADDSAPA---------LAIKAT 45
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 14 KTANVDPLQFSFRVKFYPPD--P-FKLKEDI 41
K A + LQ S +K Y D P +K +
Sbjct: 19 KQA-LKKLQAS--LKLYADDSAPALAIKATM 46
Score = 26.5 bits (57), Expect = 4.8
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 49 QLKRDLLHGRL--YCDPNAAA-QLGAYI 73
LK+ L L Y D +A A + A +
Sbjct: 21 ALKK--LQASLKLYADDSAPALAIKATM 46
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 77 ELGDFNPEEH--VGNYVADLKI 96
ELG + H VG I
Sbjct: 363 ELGAESEACHVQVGEAAKAAGI 384
>3txs_A Terminase DNA packaging enzyme small subunit; helix, small
terminase, viral protein; 1.81A {Aeromonas phage 44RR2}
PDB: 3txq_A
Length = 94
Score = 26.9 bits (59), Expect = 2.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 97 LLKQTTYIEEKMMEFHEKLKDQTPEQVE 124
L+ Q T ++M++ H+++KD V+
Sbjct: 66 LMGQMTTTNKEMLKMHKEMKDLAGAAVQ 93
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 27.5 bits (62), Expect = 3.2
Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 77 ELGDFNPEEH--VGNYVADLKI 96
ELGD + + H + ++ +
Sbjct: 359 ELGDQSVQLHNQMILSLSPDVL 380
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein
complex, G-domain, immunoglobulin fold, walker fold,
GTP-binding protein; HET: GDP; 2.35A {Homo sapiens}
SCOP: b.1.18.8 PDB: 1fst_A
Length = 180
Score = 27.2 bits (60), Expect = 3.5
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDIT-RYQIYLQLKRDLLHGRLY 60
V T + + + ++ + LKE R +I+ ++ RD++ G Y
Sbjct: 45 NVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKY 104
Query: 61 CDPNAAAQLGAYILQEELGDFNPEEH 86
+ +G + P
Sbjct: 105 VQHTYRTGVKVDKATFMVGSYGPRPE 130
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 27.2 bits (59), Expect = 5.4
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 126 AFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILT 163
A L G+ + V +A N + + H + T
Sbjct: 178 AVFGNPKALPALGLPEEKVVYNATNVYFNNMTHVQLCT 215
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding
protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos
taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Length = 219
Score = 26.6 bits (58), Expect = 6.4
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDIT-RYQIYLQLKRDLLHGRLY 60
V T + L + ++ + F LKE + R +I ++ R+++ G Y
Sbjct: 84 NVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKY 143
Query: 61 CDPNAAAQLGAYILQEELGDFNPEEH 86
+ +G + P
Sbjct: 144 IQHTYRKGVKIDKTDYMVGSYGPRAE 169
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural
genomics, P protein structure initiative; HET: MSE;
1.78A {Helicobacter pylori}
Length = 99
Score = 25.3 bits (56), Expect = 6.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 93 DLKILLKQTTYIEEKMMEFHEKLKDQT 119
D L ++++ + EK KD
Sbjct: 4 DFSQLGGLLDGMKKEFSQLEEKNKDTI 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.420
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,384,323
Number of extensions: 201747
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 38
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)