RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2836
(215 letters)
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 118 bits (296), Expect = 4e-35
Identities = 50/106 (47%), Positives = 68/106 (64%)
Query: 32 PDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYV 91
PDP +L EDITRY + LQL++D++ GRL C A LG+Y +Q ELGD++PE H +YV
Sbjct: 1 PDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYV 60
Query: 92 ADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTY 137
+D K+ QT +EEK+ME H+ + TP Q + FL A L Y
Sbjct: 61 SDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 109 bits (275), Expect = 7e-32
Identities = 27/107 (25%), Positives = 60/107 (56%), Gaps = 8/107 (7%)
Query: 36 KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLK 95
+L ++IT++ +LQ+K+ +L ++YC P A+ L +Y +Q + GD++P H ++A +
Sbjct: 5 ELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEE 64
Query: 96 ILLKQTT--------YIEEKMMEFHEKLKDQTPEQVETAFLRKAACL 134
+L K+ EE++ ++ + + + ++ E +L+ A L
Sbjct: 65 LLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 106 bits (266), Expect = 2e-30
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 27 VKFYPPDPFKLKED-ITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEE 85
+KF+ D D + +Y+Q + D+L+G + A + Y Q + G N ++
Sbjct: 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQK 60
Query: 86 HVGNYVADLKILLKQTT--YIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTY 137
H ++ L K+ E K+ H+ + + + + +++ A L TY
Sbjct: 61 HKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 104 bits (262), Expect = 7e-30
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 36 KLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLK 95
+L +DIT+ +LQ+K +L+ +YC P A L +Y +Q + GDFN E H Y+A K
Sbjct: 5 ELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDK 64
Query: 96 ILLKQT--------TYIEEKMMEFHEKLKDQTPEQVETAFLRKAACL 134
+L ++ EE++ +HE+ + E +L+ A L
Sbjct: 65 LLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 70.6 bits (173), Expect = 7e-17
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 138 GVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHED 197
GVD KD G I LG+ +G+L + R R+ W +V I+Y+ F + + E
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQ 60
Query: 198 PRTKNMMY 205
+ ++ +
Sbjct: 61 EQYESTIG 68
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 67.2 bits (164), Expect = 1e-15
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 135 DTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTR---YLWKQVQNINYEGKMFIVH 191
+ YGV+ +K+ G++++LG++ G+ + N R T + W +++NI++ K F++
Sbjct: 1 EMYGVNYFSIKNKKGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIK 60
Query: 192 LVFHEDPR 199
+ + P
Sbjct: 61 PIDKKAPD 68
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 65.2 bits (159), Expect = 9e-15
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 135 DTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTT---RYLWKQVQNINYEGKMFIVH 191
+ YGV+ +++ G ++ LG++ G+ + R T + W +++NI+Y K F +
Sbjct: 1 EMYGVNYFAIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIK 60
Query: 192 LVFHEDPR 199
+ +
Sbjct: 61 PLDKKIDV 68
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 59.0 bits (142), Expect = 4e-12
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 38 KEDITRYQIYLQLKRDLLHGRL-YCDPNAAAQLGAYILQEELGDFNPEEHVGNYV----- 91
++ T Y Q+K D + D A +LG ++ G+
Sbjct: 9 EDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRSYGEMRGNALEKKSNYEVLE 68
Query: 92 --ADLKILL-------KQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTY 137
L+ + + + + + + + E+ F + + +
Sbjct: 69 KDVGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), II [TaxId: 4076]}
Length = 259
Score = 33.1 bits (75), Expect = 0.016
Identities = 11/66 (16%), Positives = 27/66 (40%)
Query: 144 VKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNM 203
V +H ++ + +N+ GI+ + + T + + +IN+E + L ++
Sbjct: 79 VANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG 138
Query: 204 MYSSYS 209
S
Sbjct: 139 NVVFIS 144
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 29.7 bits (67), Expect = 0.059
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 19 DPLQFSFRVKFYP 31
P F+F VKFYP
Sbjct: 69 VPWNFTFNVKFYP 81
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 29.7 bits (67), Expect = 0.067
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 19 DPLQFSFRVKFYP 31
+P+ F F KFYP
Sbjct: 71 EPVTFHFLAKFYP 83
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 29.7 bits (67), Expect = 0.068
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 19 DPLQFSFRVKFYP 31
PL F FR KFYP
Sbjct: 71 SPLLFKFRAKFYP 83
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 27.1 bits (60), Expect = 1.3
Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 15/90 (16%)
Query: 120 PEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQ 179
+ G ++ + +N+ I W++V
Sbjct: 60 ERERVRFV---EEAAYALG------------RVDVLVNNAAIAAPGSALTVRLPEWRRVL 104
Query: 180 NINYEGKMFIVHLVFHEDPRTKNMMYSSYS 209
+N M + L E + + +
Sbjct: 105 EVNLTAPMHLSALAAREMRKVGGGAIVNVA 134
>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
[TaxId: 1314]}
Length = 208
Score = 25.5 bits (55), Expect = 5.1
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 27 VKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYC 61
V P DPF I + IY + L + +
Sbjct: 17 VYLKPEDPFTWASGI-KSPIYTDNRVTLSYPKTRD 50
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 24.7 bits (54), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 101 TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAA 132
YI++ M KL++Q PE+V+ F+ AA
Sbjct: 89 KKYIKDYMKSIKGKLEEQRPERVK-PFMTGAA 119
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 24.3 bits (53), Expect = 8.8
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 101 TTYIEEKMMEFHEKLKDQTPEQVETAFLRKAA 132
+ YI+ M + + L+++ P++V+ F KA
Sbjct: 88 SVYIKNYMQKILKYLEEKKPDRVD-VFKTKAQ 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.420
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,990
Number of extensions: 40368
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 23
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)