BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2837
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TJ2|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With Acetate
Length = 584
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 28/99 (28%)
Query: 21 ADTGEPLDELETDTKDWLKSL---------------------GVYKATQAAIDRAN---L 56
ADT PLDEL D ++ L G + A +D AN L
Sbjct: 486 ADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRL 545
Query: 57 KSISNA---QKIQKFEFLPA-DFSIPTGELGPTMKVKRP 91
S+S+A +QK++ LP + + GE+ P + P
Sbjct: 546 ASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEP 584
>pdb|3ITG|A Chain A, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
pdb|3ITG|B Chain B, Structure The Proline Utilization A Proline Dehydrogenase
Domain (Puta86-630) Inactivated With N-Propargylglycine
Length = 602
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 28/99 (28%)
Query: 21 ADTGEPLDELETDTKDWLKSL---------------------GVYKATQAAIDRAN---L 56
ADT PLDEL D ++ L G + A +D AN L
Sbjct: 486 ADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRL 545
Query: 57 KSISNA---QKIQKFEFLPA-DFSIPTGELGPTMKVKRP 91
S+S+A +QK++ LP + + GE+ P + P
Sbjct: 546 ASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEP 584
>pdb|1TIW|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With
L-Tetrahydro-2-Furoic Acid
pdb|1TJ0|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Co-Crystallized With L-Lactate
pdb|1TJ1|A Chain A, Crystal Structure Of E. Coli Puta Proline Dehydrogenase
Domain (Residues 86-669) Complexed With L-Lactate
pdb|2FZN|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With Proline
pdb|2FZM|A Chain A, Structure Of The E. Coli Puta Proline Dehydrogenase Domain
Reduced By Dithionite And Complexed With So2
Length = 602
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 28/99 (28%)
Query: 21 ADTGEPLDELETDTKDWLKSL---------------------GVYKATQAAIDRAN---L 56
ADT PLDEL D ++ L G + A +D AN L
Sbjct: 486 ADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRL 545
Query: 57 KSISNA---QKIQKFEFLPA-DFSIPTGELGPTMKVKRP 91
S+S+A +QK++ LP + + GE+ P + P
Sbjct: 546 ASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEP 584
>pdb|1K87|A Chain A, Crystal Structure Of E.coli Puta (residues 1-669)
Length = 669
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 28/99 (28%)
Query: 21 ADTGEPLDELETDTKDWLKSL---------------------GVYKATQAAIDRAN---L 56
ADT PLDEL D ++ L G + A +D AN L
Sbjct: 571 ADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRL 630
Query: 57 KSISNA---QKIQKFEFLPA-DFSIPTGELGPTMKVKRP 91
S+S+A +QK++ LP + + GE+ P + P
Sbjct: 631 ASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEP 669
>pdb|1AX8|A Chain A, Human Obesity Protein, Leptin
Length = 146
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 26 PLDELETDTKDWLKSLGVYKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPT 79
P+ +++ DTK +K++ V + D ++ +S+S+ QK+ +F+P I T
Sbjct: 2 PIQKVQDDTKTLIKTI-VTRIN----DISHTQSVSSKQKVTGLDFIPGLHPILT 50
>pdb|3KD4|A Chain A, Crystal Structure Of A Putative Protease (Bdi_1141) From
Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
pdb|3KD4|B Chain B, Crystal Structure Of A Putative Protease (Bdi_1141) From
Parabacteroides Distasonis Atcc 8503 At 2.00 A
Resolution
Length = 506
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 29 ELETDTKDWLKSLGVYKATQAAIDRANLKSISNAQKIQKFEFLPADFS 76
+L+T T++ + S K T+ R N + ++ K +F PA++S
Sbjct: 438 KLQTSTQEQVISKPFGKVTRTITPRGNTIEVVRTIELNKQQFTPAEYS 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,894,848
Number of Sequences: 62578
Number of extensions: 96402
Number of successful extensions: 302
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 7
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)