Query psy2837
Match_columns 107
No_of_seqs 124 out of 1132
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:10:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mdb_A 2,3-dihydroxybenzoate-A 97.5 0.00018 6.3E-09 54.5 5.8 44 58-107 496-539 (539)
2 3fce_A D-alanine--poly(phospho 97.2 0.001 3.4E-08 49.9 6.7 38 55-99 467-504 (512)
3 2d1s_A Luciferase, luciferin 4 97.1 0.00067 2.3E-08 51.6 5.0 43 55-104 505-548 (548)
4 3e7w_A D-alanine--poly(phospho 96.9 0.0049 1.7E-07 46.2 8.6 39 55-100 466-504 (511)
5 4gs5_A Acyl-COA synthetase (AM 96.9 0.002 6.7E-08 46.6 6.0 39 55-100 317-355 (358)
6 1pg4_A Acetyl-COA synthetase; 96.4 0.0097 3.3E-07 46.2 7.1 39 59-103 587-625 (652)
7 1t5h_X 4-chlorobenzoyl COA lig 96.1 0.021 7E-07 42.7 7.3 35 58-98 469-503 (504)
8 1ry2_A Acetyl-coenzyme A synth 95.9 0.0067 2.3E-07 47.3 4.1 39 59-103 603-641 (663)
9 4fuq_A Malonyl COA synthetase; 95.9 0.016 5.3E-07 43.5 6.0 38 55-99 463-500 (503)
10 3c5e_A Acyl-coenzyme A synthet 95.8 0.032 1.1E-06 42.5 7.5 38 55-99 525-562 (570)
11 3l8c_A D-alanine--poly(phospho 95.5 0.04 1.4E-06 41.2 6.9 46 48-100 467-513 (521)
12 3ni2_A 4-coumarate:COA ligase; 95.4 0.024 8.1E-07 42.8 5.4 36 58-99 500-535 (536)
13 3etc_A AMP-binding protein; ad 95.3 0.03 1E-06 42.8 5.6 35 59-99 545-579 (580)
14 3r44_A Fatty acyl COA syntheta 94.7 0.016 5.3E-07 43.6 2.5 37 59-101 479-515 (517)
15 3tsy_A Fusion protein 4-coumar 94.6 0.0068 2.3E-07 49.1 0.2 43 58-106 547-589 (979)
16 3g7s_A Long-chain-fatty-acid-- 94.5 0.026 8.8E-07 42.7 3.2 36 58-99 507-542 (549)
17 2v7b_A Benzoate-coenzyme A lig 94.4 0.14 4.9E-06 38.3 7.2 32 58-95 497-528 (529)
18 3ivr_A Putative long-chain-fat 94.3 0.0075 2.6E-07 45.1 0.0 37 58-100 466-502 (509)
19 3ipl_A 2-succinylbenzoate--COA 93.7 0.11 3.9E-06 38.5 5.4 35 59-99 463-497 (501)
20 3nyq_A Malonyl-COA ligase; A/B 93.4 0.17 5.8E-06 37.9 5.9 31 59-95 474-504 (505)
21 3rg2_A Enterobactin synthase c 93.3 0.36 1.2E-05 37.0 7.8 40 58-103 499-538 (617)
22 1amu_A GRSA, gramicidin synthe 92.8 0.2 7E-06 38.0 5.7 31 59-95 495-525 (563)
23 3gqw_A Fatty acid AMP ligase; 92.6 0.11 3.7E-06 39.1 3.8 41 61-106 529-570 (576)
24 1v25_A Long-chain-fatty-acid-C 91.3 0.015 5.2E-07 43.9 -2.2 38 58-101 501-538 (541)
25 4gr5_A Non-ribosomal peptide s 87.3 0.11 3.9E-06 39.4 0.0 31 59-95 537-567 (570)
26 2vsq_A Surfactin synthetase su 86.9 1.5 5.1E-05 36.7 6.4 30 59-94 926-955 (1304)
27 4dg8_A PA1221; ANL superfamily 86.0 0.59 2E-05 36.1 3.4 35 59-99 479-513 (620)
28 3ite_A SIDN siderophore synthe 85.4 0.16 5.6E-06 38.3 0.0 45 50-100 499-544 (562)
29 3rix_A Luciferase, luciferin 4 82.7 0.25 8.5E-06 37.3 0.0 38 59-102 506-544 (550)
30 3o83_A Peptide arylation enzym 82.7 0.25 8.5E-06 37.3 0.0 36 58-99 505-540 (544)
31 3kxw_A Saframycin MX1 syntheta 71.7 1.6 5.4E-05 32.9 1.6 28 67-99 539-567 (590)
32 2y27_A Phenylacetate-coenzyme 64.8 4.8 0.00016 29.1 3.0 22 64-91 409-431 (437)
33 2y4o_A Phenylacetate-coenzyme 53.1 3 0.0001 30.3 0.1 24 65-93 414-438 (443)
34 3qov_A Phenylacetate-coenzyme 36.7 29 0.00099 24.9 3.2 20 66-91 409-429 (436)
35 3lno_A Putative uncharacterize 33.7 38 0.0013 19.9 2.9 41 44-87 60-101 (108)
36 3cq1_A Putative uncharacterize 28.3 87 0.003 18.0 3.9 40 46-89 59-99 (103)
37 3lax_A Phenylacetate-coenzyme 26.4 94 0.0032 17.6 4.0 7 83-90 95-101 (109)
38 2lxf_A Uncharacterized protein 26.2 1.2E+02 0.0039 18.5 4.7 40 44-90 82-121 (121)
39 3muj_A Transcription factor CO 25.4 66 0.0022 20.3 3.0 21 86-106 115-135 (138)
40 2zjr_3 50S ribosomal protein L 25.2 14 0.00048 20.4 -0.1 13 81-93 15-27 (66)
41 1uwd_A Hypothetical protein TM 24.8 47 0.0016 19.2 2.2 40 44-87 58-98 (103)
42 3r8s_3 50S ribosomal protein L 23.4 17 0.00059 19.9 0.0 12 81-92 14-25 (64)
43 3v2d_8 50S ribosomal protein L 22.9 17 0.0006 19.9 -0.0 12 81-92 15-26 (65)
44 4art_A Structural protein ORF2 22.0 5.6 0.00019 26.6 -2.6 39 49-88 101-139 (279)
No 1
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=97.47 E-value=0.00018 Score=54.50 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=37.1
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHHHhhhcC
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYDV 107 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~~ly~~ 107 (107)
+|+.|..++.|.+++ .| -+|++||+.|+.+.+.|.+.|++||++
T Consensus 496 ~L~~~~~P~~i~~v~-~l-----P~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 496 GLAAYKIPDRVEFVE-SF-----PQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp TCCGGGSCSEEEECS-SC-----CBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred CCCcccCCCEEEEec-cC-----CCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 389999999999885 34 489999999999999999999999974
No 2
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=97.16 E-value=0.001 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=31.8
Q ss_pred hhhCCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 55 NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 55 n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
++. |+.|..++.|.++++ + -+|++||+.|+.+.+.|.+
T Consensus 467 ~~~-L~~~~~P~~~~~~~~-l-----P~t~~GKi~R~~L~~~~~~ 504 (512)
T 3fce_A 467 NER-LPNYMIPRKFMYQSS-I-----PMTPNGKVDRKKLLSEVTA 504 (512)
T ss_dssp HTT-SCGGGSCSEEEECSC-C-----CBCTTSSBCHHHHHHHHHC
T ss_pred Hhh-CchhcCCeEEEEecc-c-----CCCCCcChHHHHHHhhhhh
Confidence 454 999999999988743 3 5899999999999999875
No 3
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=97.07 E-value=0.00067 Score=51.57 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=34.1
Q ss_pred hhhCCCCCccee-eEEEecCCCCCCCCcccccCCCchHHHHHHHHHHHHhh
Q psy2837 55 NLKSISNAQKIQ-KFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKF 104 (107)
Q Consensus 55 n~~~l~~~e~i~-~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~~l 104 (107)
++. |+.|..++ .|.+++ .+ -+|++||+.|+.+.+.|.+.|++|
T Consensus 505 ~~~-l~~~~~p~~~i~~v~-~l-----P~t~~GKi~r~~L~~~~~~~i~~~ 548 (548)
T 2d1s_A 505 ASQ-VSNAKRLRGGVRFVD-EV-----PKGLTGKIDGRAIREILKKPVAKM 548 (548)
T ss_dssp HTT-SCGGGSCTTCEEECS-SC-----CBCTTSCBCHHHHHHHHHSCC---
T ss_pred HHh-ccccccccccEEEcc-CC-----CCCCcchhHHHHHHHHHhhhhhcC
Confidence 344 89999999 888874 34 589999999999999999998876
No 4
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=96.93 E-value=0.0049 Score=46.22 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.1
Q ss_pred hhhCCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHH
Q psy2837 55 NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSI 100 (107)
Q Consensus 55 n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~ 100 (107)
++. |+.|..++.|.++++ + .+|++||+.|+.+.+.|.+.
T Consensus 466 ~~~-L~~~~~P~~~~~v~~-l-----P~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 466 AAS-LPAYMIPRKFIYQDH-I-----QMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp HHH-SCGGGSCSEEEECSC-C-----CBCTTSCBCHHHHHHHHHHH
T ss_pred Hhh-CchhhCCeeEEEecc-C-----CCCCCcCccHHHHHhHHhhh
Confidence 344 899999999988754 3 58999999999999988753
No 5
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=96.90 E-value=0.002 Score=46.65 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=31.5
Q ss_pred hhhCCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHH
Q psy2837 55 NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSI 100 (107)
Q Consensus 55 n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~ 100 (107)
++. |+.|.+++.|.++++ | -+|++||+.|+++.++|++.
T Consensus 317 ~~~-L~~~~~P~~i~~v~~-l-----P~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 317 RSR-VSTYENPKHIYFAKA-F-----AKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHH-SCGGGSCSCEEEESS-C-----CBCTTSCBCHHHHHHHTC--
T ss_pred Hhh-CCCCCCceEEEEECC-c-----CCCCCCChhHHHHHHHhhhh
Confidence 344 899999999999864 3 48999999999999988764
No 6
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=96.39 E-value=0.0097 Score=46.21 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=31.5
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHHHh
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDK 103 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~~ 103 (107)
++.|..++.|.++++ + -+|++||+.|+.+.+.|...|+.
T Consensus 587 l~~~~~P~~i~~v~~-l-----P~T~sGKi~R~~L~~~~~~~~~~ 625 (652)
T 1pg4_A 587 IGPLATPDVLHWTDS-L-----PKTRSGKIMRRILRKIAAGDTSN 625 (652)
T ss_dssp TCGGGCCSEEEECSC-C-----CBCTTSCBCHHHHHHHHHTC---
T ss_pred CCCCcCCeEEEEcCC-C-----CCCCCccchHHHHHHHHhCCCCC
Confidence 899999999998864 3 48999999999999999876543
No 7
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=96.10 E-value=0.021 Score=42.72 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQ 98 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~ 98 (107)
.|+.|..++.|.++++ | -+|++||+.|+.+.+.|+
T Consensus 469 ~L~~~~~P~~i~~v~~-l-----P~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 469 ELADFKRPKRYFILDQ-L-----PKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SCCGGGSCSEEEECSC-C-----CBCTTSCBCHHHHHHHHC
T ss_pred cCcccccceEEEEhhh-C-----CCCCCCCEeHHHHHHHhc
Confidence 4999999999999864 4 489999999999988774
No 8
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=95.94 E-value=0.0067 Score=47.30 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=29.9
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHHHh
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDK 103 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~~ 103 (107)
++.|..++.|.++++ + -+|++||+.|+.+.+.|...++.
T Consensus 603 L~~~~~P~~i~~v~~-l-----P~T~sGKi~R~~L~~~~~~~~~~ 641 (663)
T 1ry2_A 603 IGPFAAPKLIILVDD-L-----PKTRSGKIMRRILRKILAGESDQ 641 (663)
T ss_dssp TCTTTSCSEEEECSC-C-----CBCTTSCBCHHHHHHSCC-----
T ss_pred CCCCcCCeEEEEcCC-C-----CCCCccCchHHHHHHHHcCCCCC
Confidence 899999999999864 3 48999999999999988776543
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=95.92 E-value=0.016 Score=43.49 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=31.9
Q ss_pred hhhCCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 55 NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 55 n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
++. |+.|..++.|.++++ + -+|++||+.|+.+.+.|++
T Consensus 463 ~~~-L~~~~~P~~i~~v~~-l-----P~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 463 DGQ-LAKFKMPKKVIFVDD-L-----PRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp BTT-BCGGGCCSEEEEESC-C-----CBCTTSCBCHHHHHHHTTT
T ss_pred Hhh-cccCCCCCEEEEECC-C-----CCCcccceeHHHHHHHHHH
Confidence 444 899999999999854 4 5899999999999988864
No 10
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=95.84 E-value=0.032 Score=42.55 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=31.5
Q ss_pred hhhCCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 55 NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 55 n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
++. |+.|..++.|.++++ | .+|++||++|+.+.+.|.+
T Consensus 525 ~~~-L~~~~~P~~i~~v~~-l-----P~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 525 KSV-TAPYKYPRKIEFVLN-L-----PKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp HHH-SCGGGSCSEEEEESC-C-----CBCTTCCBCHHHHHHHHTC
T ss_pred Hhh-CccccCCcEEEEecc-C-----CCCCCcCCcHHHHHHHHHh
Confidence 344 899999999999854 4 5999999999999988754
No 11
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=95.53 E-value=0.04 Score=41.21 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHH-hhhCCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHH
Q psy2837 48 QAAIDRA-NLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSI 100 (107)
Q Consensus 48 ~~~l~~~-n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~ 100 (107)
.++|.+. .+. |+.|..++.|.++++ + -+|++||+.|+.+.+.|.+.
T Consensus 467 ~~~l~~~l~~~-l~~~~~P~~i~~v~~-l-----P~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 467 TKAIKASVKDH-MMSYMMPSKFLYRDS-L-----PLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp HHHHHHHSGGG-SCGGGSCSEEEECSS-C-----CBCTTSSBCHHHHHHHTC--
T ss_pred HHHHHHHHHhh-CccccCCeEEEEecc-c-----CCCCCcCccHHHHhhhhhcC
Confidence 3445444 444 999999999988754 4 48999999999999988654
No 12
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=95.44 E-value=0.024 Score=42.77 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.5
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
.|+.|..++.|.++++ + -+|++||+.|+.+.+.|+.
T Consensus 500 ~l~~~~~p~~i~~v~~-l-----P~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 500 QVIFYKRIKRVFFIEA-I-----PKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TSCGGGCCSEEEECSC-C-----CBCTTSCBCHHHHHTC---
T ss_pred hccCCccccEEEEEec-C-----CCCCCCCeeHHHHHHHhcc
Confidence 3899999999998854 4 4899999999999887764
No 13
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=95.30 E-value=0.03 Score=42.82 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=13.0
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
++.|..++.|.++++ + -+|++||++|+.+.+.|..
T Consensus 545 l~~~~~P~~i~~v~~-l-----P~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 545 TAPYKYPRIIEFVPE-L-----PKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp SCGGGCCSEEEEECC--------------------------
T ss_pred CCCccCCeEEEEeCC-C-----CCCCCcCCcHHHHHhHhhc
Confidence 899999999998864 3 4899999999999988764
No 14
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=94.69 E-value=0.016 Score=43.63 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=31.9
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSII 101 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I 101 (107)
|+.|..++.|.++++ + -+|++||+.|+.+.+.|.+.+
T Consensus 479 L~~~~~P~~i~~v~~-l-----P~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 479 LARYKLPKKVIFAEA-I-----PRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp SCGGGSCSEEEECSC-C-----CBCTTCCBCHHHHHHHHGGGC
T ss_pred CCCCCCCCEEEEECC-C-----CCCCCcCccHHHHHHHHHhhc
Confidence 899999999998854 4 589999999999999997654
No 15
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=94.56 E-value=0.0068 Score=49.07 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=0.4
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHHHhhhc
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 106 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~~ly~ 106 (107)
.|+.|..++.|.++++ + -+|++||+.|+.+.+.|.+.+...|.
T Consensus 547 ~l~~~~~p~~i~~v~~-l-----P~t~~GKi~r~~L~~~~~~~~~~~~~ 589 (979)
T 3tsy_A 547 QVVFYKRINKVFFTES-I-----PKAPSGKILRKDLRAKLANGLGSGMA 589 (979)
T ss_dssp ------------------------------------------------C
T ss_pred hcccccCCeEEEEeCC-c-----CcCCCCCeeHHHHHHHHHhhcCCccc
Confidence 3899999999888753 3 48999999999999999988876664
No 16
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=94.47 E-value=0.026 Score=42.69 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=9.6
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
.|+.|..++.|.++++ | -+|++||+.|+.+.+.+..
T Consensus 507 ~L~~~~~P~~i~~v~~-l-----P~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 507 RISGYKRVREVEFVEE-L-----PRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp TCC-----CCCCEEEE-C-----C------------------
T ss_pred hccCcccceEEEEecc-C-----CCCCCcCEeHHHHHHHhhc
Confidence 3899999999998864 3 4899999999999988865
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=94.40 E-value=0.14 Score=38.29 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=27.1
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVK 95 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~ 95 (107)
.|+.|..++.|.++++ | -+|++||++|+.+.+
T Consensus 497 ~L~~~~~P~~i~~v~~-l-----P~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 497 RLAPHKYPRDIVFVDD-L-----PKTATGKIQRFKLRE 528 (529)
T ss_dssp TSCTTTSCSEEEEESC-C-----CBCTTSCBCHHHHHC
T ss_pred hcchhhCCeEEEEecc-C-----CCCCccchhHHhHhh
Confidence 4999999999999864 4 489999999998864
No 18
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=94.33 E-value=0.0075 Score=45.11 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSI 100 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~ 100 (107)
.|+.|..++.|.+++ +| -+|++||+.|+.+.+.+.+.
T Consensus 466 ~L~~~~~P~~i~~v~-~l-----P~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 466 LIARYKKPKHVVFVE-AL-----PKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -------------------------------------------
T ss_pred hCcccCCCcEEEEec-CC-----CCCCCCCccHHHHHHHHhhc
Confidence 389999999998884 44 58999999999999888754
No 19
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=93.73 E-value=0.11 Score=38.51 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=13.8
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
|+.|..++.|.+++ .| -+|++||+.|+.+.+-+.+
T Consensus 463 L~~~~~P~~i~~v~-~l-----P~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 463 LAKYKVPKHFEKVD-TL-----PYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp SCGGGSCSEEEECS-SC-----C------------------
T ss_pred CccccCCCEEEEec-cc-----CCCCCCCEeHHHHhhcccc
Confidence 89999999999885 44 5899999999999887765
No 20
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=93.36 E-value=0.17 Score=37.87 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=14.7
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVK 95 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~ 95 (107)
|+.|..++.|.+++ .+ -+|++||+.|+.+.+
T Consensus 474 L~~~~~P~~i~~v~-~l-----P~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 474 LAPHKRPRVVRYLD-AV-----PRNDMGKIMKRALNR 504 (505)
T ss_dssp TCGGGSCSEEEECS-CC-----CC-------------
T ss_pred CCCCcCccEEEEEC-CC-----CCCCCcCeeHHhhcc
Confidence 89999999999885 34 589999999998754
No 21
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=93.32 E-value=0.36 Score=36.98 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=33.3
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHHHh
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIIDK 103 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~~ 103 (107)
.++.|..+..|.+++ .| -+|++||+.|+.+.+.|......
T Consensus 499 ~lp~~~vP~~~~~v~-~l-----P~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 499 GIAEFKLPDRVECVD-SL-----PLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp TCCGGGSCSEEEECS-CC-----CBCTTSSBCHHHHHHHHHHHHHH
T ss_pred CCccccCCcEEEEec-cc-----CCCCCCCCcHHHHHHHHhccccc
Confidence 489999999999885 44 59999999999999988876543
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=92.81 E-value=0.2 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=26.0
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVK 95 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~ 95 (107)
|+.|..++.|.++++ + -+|++||+.|+.+.+
T Consensus 495 L~~y~~P~~i~~v~~-l-----P~t~~GKi~r~~L~~ 525 (563)
T 1amu_A 495 LPTYMIPSYFIQLDK-M-----PLTSNGKIDRKQLPE 525 (563)
T ss_dssp SCGGGSCSEEEECSS-C-----CBCTTSSBCGGGSCC
T ss_pred CchhhCCcEEEEecc-c-----CCCCCcChhHHhcCC
Confidence 899999999998854 4 489999999988754
No 23
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=92.58 E-value=0.11 Score=39.09 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCcceeeEEEecC-CCCCCCCcccccCCCchHHHHHHHHHHHHhhhc
Q psy2837 61 NAQKIQKFEFLPA-DFSIPTGELGPTMKVKRPFVVKKYQSIIDKFYD 106 (107)
Q Consensus 61 ~~e~i~~~~l~~~-~ft~eng~lT~t~KlkR~~v~~~y~~~I~~ly~ 106 (107)
.|..+..+.+++. .+ -+|++||+.|+.+.+.|.+.+.+.|.
T Consensus 529 ~~~~p~~i~~v~~~~l-----P~t~~GKi~r~~l~~~~~~~~~~~~~ 570 (576)
T 3gqw_A 529 EFGVTAAIDLLPPHSI-----PRTSSGKPARAEAKKRYQKAYAASLN 570 (576)
T ss_dssp HHSCCEEEEEECSSCS-----CBCTTSSBCHHHHHHHHHHHHTCC--
T ss_pred HhCCceeEEEECCCCc-----CcCCCccchHHHHHHHHHHHhhhccc
Confidence 4556667777752 44 58999999999999999999877663
No 24
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=91.26 E-value=0.015 Score=43.91 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=20.4
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQSII 101 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I 101 (107)
.|+.|..++.|.++++ + -+|++||+.|+.+.+.|.+.|
T Consensus 501 ~L~~~~~P~~i~~v~~-l-----P~t~~GKi~r~~L~~~~~~~~ 538 (541)
T 1v25_A 501 GFAKWQLPDAYVFAEE-I-----PRTSAGKFLKRALREQYKNYY 538 (541)
T ss_dssp CCCTTTSCSBC--------------------CCTTHHHHSTTSS
T ss_pred cCccccCCcEEEEeCC-C-----CCCCccCeeHHHHHHHHHHhh
Confidence 4899999999998753 3 589999999999999886543
No 25
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=87.31 E-value=0.11 Score=39.38 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVK 95 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~ 95 (107)
++.|..++.|.++++ | -+|++||+.|+.+.+
T Consensus 537 l~~~~~P~~i~~v~~-l-----P~t~~GKi~R~~L~~ 567 (570)
T 4gr5_A 537 LPAYMVPVECVPVDE-L-----PRTPNGKLDRRALTG 567 (570)
T ss_dssp -------------------------------------
T ss_pred CccccCCcEEEEccc-C-----CCCCCcCcchHhhhc
Confidence 889999998887743 3 589999999998754
No 26
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=86.89 E-value=1.5 Score=36.72 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.1
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVV 94 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~ 94 (107)
|+.|..+..|.++++ + -+|++||+.|+.+.
T Consensus 926 Lp~ymvP~~~~~l~~-l-----P~t~~GKidR~~L~ 955 (1304)
T 2vsq_A 926 LPAYMVPQTFTFLDE-L-----PLTTNGKVNKRLLP 955 (1304)
T ss_dssp SCGGGSCSEEEEESC-C-----CCCSSCSSCCSCCC
T ss_pred ChHhhhccEEEEecc-c-----CCCCCcccCHhhcC
Confidence 999999999999864 3 48999999998654
No 27
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=85.98 E-value=0.59 Score=36.05 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=25.5
Q ss_pred CCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 59 ISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 59 l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
|+.|..++.|.+++ .| -+|++||+.|+.+.+.|.+
T Consensus 479 Lp~y~~P~~~~~v~-~l-----P~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 479 LPTWQRPHACVRVE-AL-----PLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp SCGGGSCSEEEECS-SC-----CCC----CCHHHHHHHTCS
T ss_pred ChhhcCCcEEEEEC-cC-----CCCcccCHhHHHHhhcccc
Confidence 89999999999874 44 5999999999999877654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=85.39 E-value=0.16 Score=38.28 Aligned_cols=45 Identities=7% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHhhhCCCCCcceeeEEEecCCCCCCCCccc-ccCCCchHHHHHHHHHH
Q psy2837 50 AIDRANLKSISNAQKIQKFEFLPADFSIPTGELG-PTMKVKRPFVVKKYQSI 100 (107)
Q Consensus 50 ~l~~~n~~~l~~~e~i~~~~l~~~~ft~eng~lT-~t~KlkR~~v~~~y~~~ 100 (107)
+|.+.-+..|+.|..++.|.++++ | -+| ++||+.|+.+.+.|++.
T Consensus 499 ~l~~~~~~~L~~y~~P~~i~~v~~-l-----P~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 499 SLRQACEQTLPAYMVPDFIIPISF-I-----PLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHhhCCcccCCcEEEEecc-C-----CCCCCCCcchHHHHHHHHhcc
Confidence 444432224999999999998854 3 356 89999999999988764
No 29
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=82.70 E-value=0.25 Score=37.26 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCcceee-EEEecCCCCCCCCcccccCCCchHHHHHHHHHHHH
Q psy2837 59 ISNAQKIQK-FEFLPADFSIPTGELGPTMKVKRPFVVKKYQSIID 102 (107)
Q Consensus 59 l~~~e~i~~-~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~~I~ 102 (107)
++.+..+.. |.++ +.+ -+|++||+.|+.+.+.|.+...
T Consensus 506 l~~~~~~~~~i~~v-~~l-----P~t~~GKi~r~~L~~~~~~~~~ 544 (550)
T 3rix_A 506 VTTAKKLRGGVVFV-DEV-----PKGLTGKLDARKIREILIKAKK 544 (550)
T ss_dssp ---------------------------------------------
T ss_pred cccccccCCceEEE-eec-----CCCCCcceeHHHHHHHHHhhcc
Confidence 677777664 6655 344 5899999999999998876544
No 30
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=82.69 E-value=0.25 Score=37.25 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCCCcceeeEEEecCCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 58 SISNAQKIQKFEFLPADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 58 ~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
.++.|..++.|.++++ + -+|++||+.|+.+.+.|.+
T Consensus 505 ~l~~~~~P~~i~~v~~-l-----P~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 505 GIAQYKLPDQIKLIES-L-----PLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ------------------------------------------
T ss_pred CCCcccCCcEEEEecc-C-----CCCCCCCCcHHHHHHHHhh
Confidence 4899999999988753 3 5899999999999888764
No 31
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=71.73 E-value=1.6 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=21.5
Q ss_pred eEEEec-CCCCCCCCcccccCCCchHHHHHHHHH
Q psy2837 67 KFEFLP-ADFSIPTGELGPTMKVKRPFVVKKYQS 99 (107)
Q Consensus 67 ~~~l~~-~~ft~eng~lT~t~KlkR~~v~~~y~~ 99 (107)
.+.+++ +.| -+|++||+.|+.+.+.|.+
T Consensus 539 ~i~~v~~~~l-----P~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 539 TIVLIPLKAM-----PHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp EEEEEETTCS-----CCCSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCcc-----CcCCCcHHHHHHHHHHHHc
Confidence 344543 455 5899999999999999875
No 32
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=64.84 E-value=4.8 Score=29.12 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=14.8
Q ss_pred ceeeEEEec-CCCCCCCCcccccCCCchH
Q psy2837 64 KIQKFEFLP-ADFSIPTGELGPTMKVKRP 91 (107)
Q Consensus 64 ~i~~~~l~~-~~ft~eng~lT~t~KlkR~ 91 (107)
.+..+.+++ +.+ ..|+ ||++|.
T Consensus 409 ~p~~v~~v~~~~l-----P~t~-GKi~r~ 431 (437)
T 2y27_A 409 VTAVINVLPVNGI-----ERSV-GKARRV 431 (437)
T ss_dssp CCEEEEECCTTCS-----CCCS-SSCCCE
T ss_pred CceEEEEeCCCCc-----cCCC-CcceEE
Confidence 345677764 445 5788 999985
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=53.08 E-value=3 Score=30.26 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=16.4
Q ss_pred eeeEEEec-CCCCCCCCcccccCCCchHHH
Q psy2837 65 IQKFEFLP-ADFSIPTGELGPTMKVKRPFV 93 (107)
Q Consensus 65 i~~~~l~~-~~ft~eng~lT~t~KlkR~~v 93 (107)
+..+.+++ +.+ -.|++||++|...
T Consensus 414 p~~v~~v~~~~l-----P~t~~GKi~r~~~ 438 (443)
T 2y4o_A 414 SSGVTVLAAGGI-----PATATGKARRVID 438 (443)
T ss_dssp CCEEEEECTTCS-----CCCTTSCCCSEEE
T ss_pred ceEEEEeCCCcc-----cCccCCcceEEEe
Confidence 34566664 444 5799999999643
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=36.71 E-value=29 Score=24.90 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=6.6
Q ss_pred eeEEEec-CCCCCCCCcccccCCCchH
Q psy2837 66 QKFEFLP-ADFSIPTGELGPTMKVKRP 91 (107)
Q Consensus 66 ~~~~l~~-~~ft~eng~lT~t~KlkR~ 91 (107)
..+.+++ +.+ -.|+ ||++|.
T Consensus 409 ~~i~~v~~~~l-----P~t~-GKi~R~ 429 (436)
T 3qov_A 409 PKVKLVKKGSL-----PQSE-GKAVRV 429 (436)
T ss_dssp CEEEEECTTCC-----C--------CE
T ss_pred eEEEEeCCCcc-----cCcC-CcceEE
Confidence 3566664 233 4788 999884
No 35
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=33.69 E-value=38 Score=19.92 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHh-hhCCCCCcceeeEEEecCCCCCCCCcccccCC
Q psy2837 44 YKATQAAIDRAN-LKSISNAQKIQKFEFLPADFSIPTGELGPTMK 87 (107)
Q Consensus 44 ~~~i~~~l~~~n-~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~K 87 (107)
.+.|...+.+.- .. +++.+.+.--....-|||++ .+|+.+|
T Consensus 60 ~~~i~~~i~~al~~~-l~Gv~~V~V~l~~~p~W~~~--~~s~~~r 101 (108)
T 3lno_A 60 AGQIVSDVKKVLSTN-VPEVNEIEVNVVWNPPWSKE--RMSRMAK 101 (108)
T ss_dssp HHHHHHHHHHHHHHH-CTTCCCEEEEECCSSCCCGG--GSCHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCceEEEEEEecCCCChH--HCCHHHH
Confidence 445555655543 33 67777766333456689886 7887765
No 36
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=28.25 E-value=87 Score=18.01 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhCCCCCcceeeEEE-ecCCCCCCCCcccccCCCc
Q psy2837 46 ATQAAIDRANLKSISNAQKIQKFEF-LPADFSIPTGELGPTMKVK 89 (107)
Q Consensus 46 ~i~~~l~~~n~~~l~~~e~i~~~~l-~~~~ft~eng~lT~t~Klk 89 (107)
.|...+.+.-+. +++.+.+. +.+ ..-+||++ .+|+.+|.+
T Consensus 59 ~l~~~i~~al~~-l~gv~~V~-V~l~~~p~W~~~--~~s~~~r~~ 99 (103)
T 3cq1_A 59 SLGEAVRQALSR-LPGVEEVE-VEVTFEPPWTLA--RLSEKARRL 99 (103)
T ss_dssp HHHHHHHHHHHT-STTCCEEE-EEECCSSCCCGG--GCCSGGGTT
T ss_pred HHHHHHHHHHHh-CCCceeEE-EEEecCCCCChH--HCCHHHHHH
Confidence 344444444222 55665544 444 45689886 889888754
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=26.44 E-value=94 Score=17.60 Aligned_cols=7 Identities=29% Similarity=0.150 Sum_probs=3.2
Q ss_pred cccCCCch
Q psy2837 83 GPTMKVKR 90 (107)
Q Consensus 83 T~t~KlkR 90 (107)
| |||++|
T Consensus 95 t-sGKi~R 101 (109)
T 3lax_A 95 S-EGKAVR 101 (109)
T ss_dssp C----CCC
T ss_pred C-CCCcch
Confidence 6 799988
No 38
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=26.24 E-value=1.2e+02 Score=18.54 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhCCCCCcceeeEEEecCCCCCCCCcccccCCCch
Q psy2837 44 YKATQAAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKVKR 90 (107)
Q Consensus 44 ~~~i~~~l~~~n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~KlkR 90 (107)
.+.|.+.++.+.++ |+..+|..+.+.+.+... -..+.|||
T Consensus 82 ~~~v~~f~~~l~~g--Pp~A~V~~v~~~~~~~~~-----~~~F~IRR 121 (121)
T 2lxf_A 82 KEQVDAFVKYLHKG--SPKSVVKKVSIHASSRVD-----ADGFEIRR 121 (121)
T ss_dssp HHHHHHHHHHHHHC--CTTCCEEEEEEECCCCCC-----CCEECCCC
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEEEEEECCCCC-----CCCeEEcC
Confidence 56677777776543 678899999887665432 23566766
No 39
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=25.39 E-value=66 Score=20.32 Aligned_cols=21 Identities=10% Similarity=0.475 Sum_probs=18.0
Q ss_pred CCCchHHHHHHHHHHHHhhhc
Q psy2837 86 MKVKRPFVVKKYQSIIDKFYD 106 (107)
Q Consensus 86 ~KlkR~~v~~~y~~~I~~ly~ 106 (107)
-++-+..|.++.+++.+.||.
T Consensus 115 e~lpk~~~lkraa~l~e~~~~ 135 (138)
T 3muj_A 115 ERLPKEVLLKRAADLVEALYG 135 (138)
T ss_dssp SSCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHhC
Confidence 455678999999999999996
No 40
>2zjr_3 50S ribosomal protein L35; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.301.1.1 PDB: 2zjp_3* 1sm1_3 2zjq_3 3cf5_3* 3dll_3* 3pio_3* 3pip_3* 1nwy_3* 1nwx_3* 1xbp_3* 1nkw_3 1yl3_8 2b66_8 2b9n_8 2b9p_8 1pnu_3 1pny_3 1vor_5 1vou_5 1vow_5 ...
Probab=25.17 E-value=14 Score=20.39 Aligned_cols=13 Identities=23% Similarity=-0.079 Sum_probs=9.8
Q ss_pred cccccCCCchHHH
Q psy2837 81 ELGPTMKVKRPFV 93 (107)
Q Consensus 81 ~lT~t~KlkR~~v 93 (107)
-+|.+|||+|...
T Consensus 15 k~TgsGKikr~~a 27 (66)
T 2zjr_3 15 KITGTGKVMAFKS 27 (66)
T ss_pred EEcCCCcEEeccC
Confidence 3688999988653
No 41
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=24.77 E-value=47 Score=19.22 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhCCCCCcceeeEEE-ecCCCCCCCCcccccCC
Q psy2837 44 YKATQAAIDRANLKSISNAQKIQKFEF-LPADFSIPTGELGPTMK 87 (107)
Q Consensus 44 ~~~i~~~l~~~n~~~l~~~e~i~~~~l-~~~~ft~eng~lT~t~K 87 (107)
.+.|.+.+.+.-+. +++.+.+. +.+ ..-+||.+ .+|+.+|
T Consensus 58 ~~~l~~~i~~al~~-l~gv~~v~-V~l~~~p~W~~~--~~s~~~r 98 (103)
T 1uwd_A 58 AGMILSDAEEAIKK-IEGVNNVE-VELTFDPPWTPE--RMSPELR 98 (103)
T ss_dssp HHHHHHHHHHHHHT-SSSCCEEE-EEECCSSCCCGG--GSCHHHH
T ss_pred HHHHHHHHHHHHHh-CCCcceEE-EEEecCCCCChH--HCCHHHH
Confidence 55566666665333 56666654 444 45578876 7777664
No 42
>3r8s_3 50S ribosomal protein L35; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2awb_3 2aw4_3 2i2v_3 2j28_3 2i2t_3* 2qao_3* 2qba_3* 2qbc_3* 2qbe_3 2qbg_3 2qbi_3* 2qbk_3* 2qov_3 2qox_3 2qoz_3* 2qp1_3* 2rdo_3 2vhm_3 2vhn_3 2wwq_7* ...
Probab=23.38 E-value=17 Score=19.85 Aligned_cols=12 Identities=8% Similarity=-0.133 Sum_probs=9.2
Q ss_pred cccccCCCchHH
Q psy2837 81 ELGPTMKVKRPF 92 (107)
Q Consensus 81 ~lT~t~KlkR~~ 92 (107)
-+|.+||++|..
T Consensus 14 k~TgsGKikr~~ 25 (64)
T 3r8s_3 14 KKTGKGGFKHKH 25 (64)
T ss_dssp EECSSSCEEEEC
T ss_pred EEcCCCCEEecc
Confidence 478899998753
No 43
>3v2d_8 50S ribosomal protein L35; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_a 2hgj_7 2hgq_7 2hgu_7 1vsa_a 2j03_8 2jl6_8 2jl8_8 2v47_8 2v49_8 2wdi_8 2wdj_8 2wdl_8 2wdn_8 2wh2_8 2wh4_8 2wrj_8 2wrl_8 2wro_8 2wrr_8 ...
Probab=22.95 E-value=17 Score=19.91 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=8.9
Q ss_pred cccccCCCchHH
Q psy2837 81 ELGPTMKVKRPF 92 (107)
Q Consensus 81 ~lT~t~KlkR~~ 92 (107)
-+|.+||++|..
T Consensus 15 k~TgsGKikr~~ 26 (65)
T 3v2d_8 15 KITASGKVVAMK 26 (65)
T ss_dssp EECTTSCEEEEC
T ss_pred EEcCCCCEEecc
Confidence 368888888753
No 44
>4art_A Structural protein ORF273; viral protein, archaeal virus, extremophiles, bicaudavirus, hyper-thermostability; HET: SO4; 2.15A {Acidianus two-tailed virus} PDB: 4ats_A
Probab=22.04 E-value=5.6 Score=26.58 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHHhhhCCCCCcceeeEEEecCCCCCCCCcccccCCC
Q psy2837 49 AAIDRANLKSISNAQKIQKFEFLPADFSIPTGELGPTMKV 88 (107)
Q Consensus 49 ~~l~~~n~~~l~~~e~i~~~~l~~~~ft~eng~lT~t~Kl 88 (107)
+.+-.+.- |||+..-|-+|+|....|.+.|..-||.+|-
T Consensus 101 eflfdidy-glpsisdilkfylekagfrianevptpnlky 139 (279)
T 4art_A 101 EFLFDIDY-GLPSISDILKFYLEKAGFRIANEVPTPNLKY 139 (279)
T ss_dssp HHHHHHHH-CCCCHHHHHHHHHHHTTCEETTCCCCTTCCE
T ss_pred hhheeccc-CCccHHHHHHHHHHhccceecccCCCCCcee
Confidence 33444444 5899999999999999999999999999874
Done!