RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2837
(107 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.086
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 21/99 (21%)
Query: 15 LRTKMNADTGEPLDELETDTKD------WLKSLGVYKATQAAIDRANLKSISNAQK--IQ 66
L+ + N EP + D + K LG Y ++ ++ + + +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSL--VEPSKVGQFDQVLNLCLT 89
Query: 67 KFE--FLPAD------FSIPTGELGPTMKVKRPFVVKKY 97
+FE +L + + T VK ++K Y
Sbjct: 90 EFENCYLEGNDIHALAAKLLQEN--DTTLVKTKELIKNY 126
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 1.1
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 21/100 (21%)
Query: 1 MGSDKKKFLSMLL-ALRTKMN-----ADTGEPL----------DELETDTKDWLKSLGVY 44
M + S+LL L + T P D L T +W
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVN--C 352
Query: 45 KATQAAIDR--ANLKSISNAQKIQKFEFLPADFSIPTGEL 82
I+ L+ + + P IPT L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Score = 25.2 bits (54), Expect = 5.8
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 21/67 (31%)
Query: 56 LKSISNAQKIQKFEFLPADFS-------------IPTGELGPTMKVKRPFVVKKYQSII- 101
LK+I + +++ F + DF +G + T++ +K Y+ I
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-----QLKFYKPYIC 535
Query: 102 --DKFYD 106
D Y+
Sbjct: 536 DNDPKYE 542
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.1
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 63 QKIQKFE-----FLPADFSIPTGELGPTMK 87
Q ++K + + D S P + TM+
Sbjct: 20 QALKKLQASLKLYAD-D-SAPALAIKATME 47
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 25.7 bits (57), Expect = 3.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 41 LGVYKATQAAIDRA 54
L Y + A++RA
Sbjct: 241 LASYYVVKEAVERA 254
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 25.3 bits (56), Expect = 4.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 41 LGVYKATQAAIDRA 54
L VY A +AA +RA
Sbjct: 239 LAVYAAVKAARERA 252
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen
binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio
vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Length = 136
Score = 24.9 bits (54), Expect = 4.8
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 6 KKFLSMLLALRTKMNADTGEPLDELETDTKDWL 38
++F+ +L ++ A E + DWL
Sbjct: 83 RRFVETVLKWEKQLAAGDPEVVMTTLRGLVDWL 115
>2ln3_A De novo designed protein OR135; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Artificial gene}
Length = 83
Score = 24.3 bits (52), Expect = 6.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 7 KFLSMLLALRTKMNADTGEPLDELETDTKDWLKSLGV 43
KF+S L L + ++ + ++E E D +D K GV
Sbjct: 21 KFISQGLDLEVEFDSTDDKEIEEFERDMEDLAKKTGV 57
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.11 PDB: 2bp7_A
Length = 407
Score = 24.6 bits (54), Expect = 7.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 41 LGVYKATQAAIDRA 54
+ VY A++ A +RA
Sbjct: 279 VAVYAASRWAAERA 292
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A*
2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A*
1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A*
1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Length = 400
Score = 24.6 bits (54), Expect = 8.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 41 LGVYKATQAAIDRA 54
VY AT+ A RA
Sbjct: 259 FAVYNATKEARRRA 272
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural
genomics, structure-based function assignment,
decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP:
b.30.5.4
Length = 339
Score = 24.4 bits (54), Expect = 9.8
Identities = 5/16 (31%), Positives = 7/16 (43%), Gaps = 1/16 (6%)
Query: 70 FLPAD-FSIPTGELGP 84
F+ D PTG +
Sbjct: 195 FVEVDDTFCPTGAIRS 210
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,534,696
Number of extensions: 76671
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 21
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.0 bits)