BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2838
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 9/179 (5%)
Query: 176 PPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNG 234
P K + C +CGKSF+ +L H H G + KC C K+F+ K +L H + H G
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG 74
Query: 235 VR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+ +KC C KSF+Q+ NL +H + H G K Y C EC K+F+Q +L +H Q H G K
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEK 132
Query: 293 -YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT 350
Y C C KS+++ NL +H T + YKC +CG+ F++ L H H+G + +
Sbjct: 133 PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR-THTGKKTS 190
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
C C K+F+ +L H + H G + +KC C KSF+ K +L H + H G K YKC
Sbjct: 24 CPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYKCP 81
Query: 269 ECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCG 327
EC K+F+Q+ NL +H Q H G K Y C C KS++Q+ +L +H T + YKC +CG
Sbjct: 82 ECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECG 140
Query: 328 RLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
+ F++E L TH H+G + C CG + AL H R
Sbjct: 141 KSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
+ C C KSF++ +L H + H G K YKC EC K+F+ K++L H Q H G K Y
Sbjct: 22 YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYK 79
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRT 353
C C KS++Q NL +H T + Y C +CG+ F+Q LR H H+G + C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPE 138
Query: 354 CGLFCDSKRALTAHVR 369
CG + L H R
Sbjct: 139 CGKSFSREDNLHTHQR 154
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
YKC EC K+F+Q NL H Q H G K Y C C KS++Q ++L H T + YKC
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 324 ADCGRLFAQEHTLRTH 339
+CG+ F++ L H
Sbjct: 64 PECGKSFSRSDHLSRH 79
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
+KC C KSF+Q NL H + H G K YKC EC K+F+Q +L H Q H G K Y
Sbjct: 5 YKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYK 62
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK 320
C C KS+++ +L H T HQ +K
Sbjct: 63 CPECGKSFSRSDHLSRHQRT-HQNKK 87
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
KC C K+F+ NL H + H G + +KC C KSF+Q +L H + H G K YKC
Sbjct: 6 KCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEKPYKC 63
Query: 268 EECTKTFAQKQNLLSHVQAIHMGIK 292
EC K+F++ +L H Q H K
Sbjct: 64 PECGKSFSRSDHLSRH-QRTHQNKK 87
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 289 MGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR 348
M Y C C KS++Q +NL H T + YKC +CG+ F+Q L+ H H+G +
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEK 59
Query: 349 -LTCRTCGLFCDSKRALTAHVR 369
C CG L+ H R
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQR 81
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
K + C +CGKSF+ NL H H G + KC C K+F+ +L H + H G +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEKP 60
Query: 237 FKCDHCVKSFNQKPNLISHIKS 258
+KC C KSF++ +L H ++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRT 82
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAI 287
+S +GV +C C K F K L H + H G K ++C +C K + +K+NLL H
Sbjct: 2 SSGSSGV--ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARN 58
Query: 288 HMGIK---YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH 344
M +TC VC +++ + L HM + YKC+ C + F Q+ L++H + +H
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 345 SG 346
SG
Sbjct: 119 SG 120
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH--VNSIHLGVRI-KCDFCDKTFAHKPNLIAHMNSAHNGV 235
K F C +CGK + K+NL H N ++ ++ C C +TF + L HM S +
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEG 262
+KC C + F QK +L SH+ +H G
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
K +PC QCGKSFT K H+ S+HLG+R C C K F K +L+ HM H G++
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKP 65
Query: 237 FKCDHCVKSFNQKPNLISHIKS 258
++C+ C K F + + H+ S
Sbjct: 66 YECNICAKRFMWRDSFHRHVTS 87
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
C K+F HK HM S H G+R + C C K F K +L+ H+K +H GIK Y+C C
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICA 72
Query: 272 KTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQV 305
K F + + HV + C+KSY
Sbjct: 73 KRFMWRDSFHRHVTS-----------CTKSYEAA 95
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 269 ECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCG 327
+C K+F K H+ ++H+G++ Y C VC K + +L+ HM + Y+C C
Sbjct: 14 QCGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
Query: 328 RLFAQEHTLRTHTLS 342
+ F + H S
Sbjct: 73 KRFMWRDSFHRHVTS 87
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 184 DQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCD--------KTFAHKPNLIAHMNSAHNGV 235
D C + F ++ L +H+NS H+ K C + F + L+ HM H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGE 65
Query: 236 R-FKC--DHCVKSFNQKPNLISHIKSVHEGIK-YKCEE--CTKTFAQKQNLLSHVQAIHM 289
+ KC + C KS+++ NL +H++S H G K Y CE C+K F+ + H H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 290 GIK-YTCEV--CSKSYNQVTNLLSHMTTVH 316
K Y C++ C+K Y ++L H+ TVH
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 240 DHCVKSFNQKPNLISHIKSVHEGIKYK--------CEECTKTFAQKQNLLSHVQAIHMGI 291
D C + F+ + L+ HI S H + K C + F + L+ H++ H G
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-HTGE 65
Query: 292 K---YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC--ADCGRLFAQ-----EHTLRTHT 340
K T E C KSY+++ NL +H+ + + Y C C + F+ +H RTH+
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 160 FQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDK 216
F+ M R G K + C KS++ +NL H+ S H G + C+ C K
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSK 107
Query: 217 TFAHKPNLIAHMNSAHNGVR---FKCDHCVKSFNQKPNLISHIKSVH 260
F++ + H N H+ + K C K + +L H+K+VH
Sbjct: 108 AFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F+QK NL +H++ IH G K + C +C ++++Q T L H+ T + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA HT HT
Sbjct: 64 ACDICGRKFATLHTRDRHT 82
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F+QK NL +HI+ +H G K ++C C + F+Q L H++ H G K + C++C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFATLHTRDRH-TKIHLRQK 89
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ K NL H+ H G + F+C C+++F+Q L HI++ H G K + C+ C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA H + IH+ K
Sbjct: 70 RKFATLHTRDRHTK-IHLRQK 89
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + ++Q TNL +H+ +H QK ++C C R F+Q L H + H+G +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGEKP 62
Query: 349 LTCRTCGLFCDSKRALTAHVREAH 372
C CG ++ T H R+ H
Sbjct: 63 FACDICG-----RKFATLHTRDRH 81
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ K NL H+ IH G + +C C + F+ L H+ + H G + F C
Sbjct: 8 PVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFAC 65
Query: 240 DHCVKSF 246
D C + F
Sbjct: 66 DICGRKF 72
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F+QK NL +H++ IH G K + C +C ++++Q +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA HT HT
Sbjct: 64 ACDICGRKFATLHTRTRHT 82
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F+QK NL +HI+ +H G K ++C C + F+Q+ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFATLHTRTRH-TKIHLRQK 89
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ K NL H+ H G + F+C C+++F+Q+ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA H + IH+ K
Sbjct: 70 RKFATLHTRTRHTK-IHLRQK 89
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + ++Q TNL +H+ +H QK ++C C R F+Q+ +L H + H+G +
Sbjct: 5 YACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKP 62
Query: 349 LTCRTCGLFCDSKRALTAHVREAH 372
C CG ++ T H R H
Sbjct: 63 FACDICG-----RKFATLHTRTRH 81
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ K NL H+ IH G + +C C + F+ + +L AH+ + H G + F C
Sbjct: 8 PVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFAC 65
Query: 240 DHCVKSF 246
D C + F
Sbjct: 66 DICGRKF 72
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
F C C KSF + L +H+ + Y C+ C K F QK ++ H IH G K + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKC 60
Query: 296 EVCSKSYNQVTNLLSH 311
+VC K+++Q +NL++H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
C C K+F L H+ + + C +C K F+QK ++ H +H G K +KC+
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQV 62
Query: 270 CTKTFAQKQNLLSH 283
C K F+Q NL++H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FK 238
F C CGKSF L+ H+ IH R C +C K F K ++ H H G + K
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK 59
Query: 239 CDHCVKSFNQKPNLISH 255
C C K+F+Q NLI+H
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR-LTC 351
+ C++C KS+ + + L +H+ + Y C CG+ F Q+ ++ HT +H+G + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 352 RTCGLFCDSKRALTAHVRE 370
+ CG L H R+
Sbjct: 61 QVCGKAFSQSSNLITHSRK 79
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
R+KCD C KSF+ +L H + H G K YKC+EC K F Q+ +L+ H +H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVHTG 71
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 208 RIKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEG 262
R KCD C K+F+H +L H + H G + +KCD C K+F Q+ +LI H + VH G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGHHR-VHTG 71
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAH 227
+++ CD+CGKSF+ +L+ H + H G + KCD C K F + +LI H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG 346
+Y C+ C KS++ ++L H T + YKC +CG+ F Q L H VH+G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTG 71
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F+ NL H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F+ NL HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFARSDERKRH-TKIHLRQK 89
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ NL H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA+ H + IH+ K
Sbjct: 70 RKFARSDERKRHTK-IHLRQK 89
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ NLT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 8 PVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 66 DICGRKFARSDERKRHTK 83
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 289 MGIKYTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHS 345
M Y C E C + ++ +NL H+ +H QK ++C C R F++ L TH + H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHT 58
Query: 346 GVR-LTCRTCG 355
G + C CG
Sbjct: 59 GEKPFACDICG 69
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 73
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F+Q +L H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F+Q +L HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFARSDERKRH-TKIHLRQK 89
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ +L H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA+ H + IH+ K
Sbjct: 70 RKFARSDERKRHTK-IHLRQK 89
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ +LT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 8 PVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 66 DICGRKFARSDERKRHTK 83
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + ++Q +L H+ +H QK ++C C R F++ L TH + H+G +
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP 62
Query: 349 LTCRTCG 355
C CG
Sbjct: 63 FACDICG 69
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 73
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 264 KYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
++ C+ C + F + NLL H + YTC++C K++ + +L H + + +KC
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 324 ADCGRLFAQEHTLRTH 339
+CG+ F Q TL H
Sbjct: 77 QECGKGFCQSRTLAVH 92
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
C FC + F NL+ H + + + CD C K+F ++ +L H + +H K +KC+E
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQE 78
Query: 270 CTKTFAQKQNLLSHVQAIHM 289
C K F Q + L H + +HM
Sbjct: 79 CGKGFCQSRTLAVH-KTLHM 97
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVRF 237
K+F C CG+ FT NL H + H R CD C K F + +L H F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 238 KCDHCVKSFNQKPNLISHIKSVH 260
KC C K F Q L H K++H
Sbjct: 75 KCQECGKGFCQSRTLAVH-KTLH 96
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
F C C + F + NL+ H ++ + Y C+ C K F ++ +L H + IH K + C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 296 EVCSKSYNQVTNLLSHMT 313
+ C K + Q L H T
Sbjct: 77 QECGKGFCQSRTLAVHKT 94
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR-LT 350
++ C+ C + + + NLL H T + Y C C + F ++ LR H +HS +
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFK 75
Query: 351 CRTCGL-FCDSKRALTAH 367
C+ CG FC S R L H
Sbjct: 76 CQECGKGFCQS-RTLAVH 92
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F++ +L H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F++ +L HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFARSDERKRH-TKIHLRQK 89
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ +L H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA+ H + IH+ K
Sbjct: 70 RKFARSDERKRHTK-IHLRQK 89
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ +LT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 8 PVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 66 DICGRKFARSDERKRHTK 83
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + +++ +L H+ +H QK ++C C R F++ L TH + H+G +
Sbjct: 5 YACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP 62
Query: 349 LTCRTCG 355
C CG
Sbjct: 63 FACDICG 69
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 73
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F++ L H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F++ L HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFARSDERKRH-TKIHLRQK 89
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ L H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA+ H + IH+ K
Sbjct: 70 RKFARSDERKRHTK-IHLRQK 89
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ LT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 8 PVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 66 DICGRKFARSDERKRHTK 83
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 289 MGIKYTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHS 345
M Y C E C + +++ L H+ +H QK ++C C R F++ L TH + H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHT 58
Query: 346 GVR-LTCRTCG 355
G + C CG
Sbjct: 59 GEKPFACDICG 69
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 73
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F++ L H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 62
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 63 ACDICGRKFARSDERKRHT 81
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ L H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 68
Query: 272 KTFAQKQNLLSHVQAIHM 289
+ FA+ H + IH+
Sbjct: 69 RKFARSDERKRHTK-IHL 85
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F++ L HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 11 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 68
Query: 300 KSYNQVTNLLSHMTTVHQAQ 319
+ + + H T +H Q
Sbjct: 69 RKFARSDERKRH-TKIHLRQ 87
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ LT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 7 PVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 64
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 65 DICGRKFARSDERKRHTK 82
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + +++ L H+ +H QK ++C C R F++ L TH + H+G +
Sbjct: 4 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP 61
Query: 349 LTCRTCG 355
C CG
Sbjct: 62 FACDICG 68
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 32 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 72
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F++ L H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ L H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHM 289
+ FA+ H + IH+
Sbjct: 70 RKFARSDERKRHTK-IHL 86
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F++ L HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVH 316
+ + + H T +H
Sbjct: 70 RKFARSDERKRH-TKIH 85
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ LT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 8 PVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 66 DICGRKFARSDERKRHTK 83
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + +++ L H+ +H QK ++C C R F++ L TH + H+G +
Sbjct: 5 YACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP 62
Query: 349 LTCRTCG 355
C CG
Sbjct: 63 FACDICG 69
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 73
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
Y C E C + F++ L H++ IH G K + C +C +++++ +L +H+ T + +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPF 63
Query: 322 KCADCGRLFAQEHTLRTHT 340
C CGR FA+ + HT
Sbjct: 64 ACDICGRKFARSDERKRHT 82
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
C + F++ L HI+ +H G K ++C C + F++ +L +H++ H G K + C++C
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 300 KSYNQVTNLLSHMTTVHQAQK 320
+ + + H T +H QK
Sbjct: 70 RKFARSDERKRH-TKIHLRQK 89
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
CD+ F+ L H+ H G + F+C C+++F++ +L +HI++ H G K + C+ C
Sbjct: 12 CDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICG 69
Query: 272 KTFAQKQNLLSHVQAIHMGIK 292
+ FA+ H + IH+ K
Sbjct: 70 RKFARSDERKRHTK-IHLRQK 89
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
P + C + F+ LT H+ IH G + +C C + F+ +L H+ + H G + F C
Sbjct: 8 PVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFAC 65
Query: 240 DHCVKSFNQKPNLISHIK 257
D C + F + H K
Sbjct: 66 DICGRKFARSDERKRHTK 83
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 293 YTC--EVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR- 348
Y C E C + +++ L H+ +H QK ++C C R F++ L TH + H+G +
Sbjct: 5 YACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP 62
Query: 349 LTCRTCG 355
C CG
Sbjct: 63 FACDICG 69
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K F C C ++F+ +LT H+ + H G + CD C + FA
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFA 73
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
YKC+ C +F K NL SH + +H G K Y C +C +N+ NL +H T +H +K
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEK 72
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
Y C+ C S+ NL SH TVH +K Y+C CG F + L+THT +HSG
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHT-RIHSG 70
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
KCD C +F +K NL +H + H G + ++C+ C FN+ NL +H + +H G K
Sbjct: 19 KCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEK 72
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAH 227
K + CD+C SF K NL H ++H G + +C+ C F NL H
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EEC 270
C K F + H+++ H C C K+F + L H + VH G K ++C E C
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGC 70
Query: 271 TKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQ 319
K F+ NL +HV+ IH G + Y C + C+K + Q TNL SH+ T +A+
Sbjct: 71 GKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVC 298
C K F + H+ + H + C EC K F + L H Q +H G K + C E C
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGC 70
Query: 299 SKSYNQVTNLLSHMTTVHQAQKYKC--ADCGRLFAQEHTLRTHTLS 342
K ++ NL +H+ + Y C C + FAQ L++H L+
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 183 CDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHNGVR-FK 238
C +CGK+F L H +H G + +C F C K F+ NL H+ H G R +
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYV 94
Query: 239 C--DHCVKSFNQKPNLISHI 256
C D C K F Q NL SHI
Sbjct: 95 CPFDGCNKKFAQSTNLKSHI 114
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 179 KKFPC--DQCGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHM 228
K F C + CGK F+L NL HV IH G R C F C+K FA NL +H+
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 298 CSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG---VRLTCRTC 354
C+K + + + H+ T H + + CA+CG+ F + L+ H L VH+G + T C
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGC 70
Query: 355 GLFCDSKRALTAHVR 369
G L HVR
Sbjct: 71 GKRFSLDFNLRTHVR 85
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHN 233
K FPC + C K FT +LT H + H G + CD CD F K N+ H N HN
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Query: 234 --GVRFKC--DHCVKSFNQKPNLISHIKSVHEGIKYKC--EECTKTFAQKQNLLSHVQAI 287
+ C ++C K+F + L H S + + Y+C E C K F+ L H + +
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKV 158
Query: 288 HMGIKYTC---EVCSKSYNQVTNLLSHMTTVHQ 317
H G Y C + CS T L H+ HQ
Sbjct: 159 HAG--YPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 18/122 (14%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVRFKCDHCV---------KSFNQKPNLISHIKSVHEGIK 264
CD+TF+ L+ H+ H G + +H KSF K L++HI+ VH G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEK 89
Query: 265 -YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVHQA 318
+ C C K FA+ +NL H + H G K + CE C + + ++ HM VH +
Sbjct: 90 PFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTS 147
Query: 319 QK 320
K
Sbjct: 148 DK 149
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 270 CTKTFAQKQNLLSHVQAIHMG----IKYTC--EVC---SKSYNQVTNLLSHMTTVHQAQK 320
C +TF+ L++HV H+G + C E C KS+ L++H+ VH +K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-RVHTGEK 89
Query: 321 -YKC--ADCGRLFAQEHTLRTHTLSVHSGVR 348
+ C CG++FA+ L+ H + H+G +
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRT-HTGEK 119
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 239 CDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK- 292
CD+ C K + + +L +H+++ H G K YKC E C FA+ L H + H G K
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP 75
Query: 293 YTCEVCSKSYNQVTNLLSHM 312
+ C VC++S+++ +L HM
Sbjct: 76 FQCGVCNRSFSRSDHLALHM 95
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 169 GHRGGKGPPVKKFP---CDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAH 220
G G GP ++K CD C K +T +L H+ + H G + KC + CD FA
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFAR 59
Query: 221 KPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIK 257
L H H G + F+C C +SF++ +L H+K
Sbjct: 60 SDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 211 CDF--CDKTFAHKPNLIAHMNSAHNGVR-FKC--DHCVKSFNQKPNLISHIKSVHEGIK- 264
CD+ C K + +L AH+ + H G + +KC + C F + L H + H G K
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKP 75
Query: 265 YKCEECTKTFAQKQNLLSHVQ 285
++C C ++F++ +L H++
Sbjct: 76 FQCGVCNRSFSRSDHLALHMK 96
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 270 CTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQKYKCADC 326
CTK + + +L +H++ H G K Y C E C + + L H A+ ++C C
Sbjct: 23 CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 327 GRLFAQEHTLRTH 339
R F++ L H
Sbjct: 82 NRSFSRSDHLALH 94
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 209 IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGI---KY 265
+ C+ C K F +L H S + C C F +K + H++S H+G Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPY 66
Query: 266 KCEECTKTFAQKQNLLSHVQAIHMG 290
C+ C K F++ +L H++ +H G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 294 TCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTL----RTHTLSVHSGVRL 349
CE+C K + V +L H + + Y C CG F ++ + R+H SV G
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV--GKPY 66
Query: 350 TCRTCGLFCDSKRALTAHVREAHPG 374
C++CG L H+++ H G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQA--IHMGIKYTC 295
C+ C K F +L H K H G K Y C C F +K + HV++ +G Y C
Sbjct: 10 CEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 296 EVCSKSYNQVTNLLSHMTTVHQA 318
+ C K +++ +L H+ VH
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHSG 91
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 183 CDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVRFK--- 238
C+ CGK F +L H S H G + C C F K + H+ S H+G K
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYI 67
Query: 239 CDHCVKSFNQKPNLISHIKSVHEG 262
C C K F++ +L HIK VH G
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNS--IHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNG 234
K + C CG F K ++YHV S +G C C K F+ +L H+ H+G
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 146 TAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHL 205
GL F R K +Y + + H G G P + C CGK F+ +L H+ +H
Sbjct: 40 VCGLRFKR----KDRMSYHVRS--HDGSVGKP---YICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 206 G 206
G
Sbjct: 91 G 91
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 238 KCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
KC+ C K F++K L +H++ H G+K YKC+ C A +L H++ IH + + C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKC 67
Query: 296 EVCSKSYNQVTNLLSHMTT 314
++C + + L H+ +
Sbjct: 68 QICPYASRNSSQLTVHLRS 86
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
+KCE C K F++K L +H++ H G+K Y C+ C + ++L H+ + +KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 324 ADCGRLFAQEHTLRTHTLSVHSG 346
C L H L H+G
Sbjct: 68 QICPYASRNSSQLTVH-LRSHTG 89
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCE 268
KC+ C K F+ K L HM H GV+ +KC C + +L H++ + +KC+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 269 ECTKTFAQKQNLLSHVQA 286
C L H+++
Sbjct: 69 ICPYASRNSSQLTVHLRS 86
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG 290
F C+ C ++F ++ +L H +S Y C C + F ++ L+ H Q IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG 346
+ CEVC++++ + +L H + + Y C C R F + L H +HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEG 262
C+ C + FA + +L H S N + C C ++F ++ LI H + +H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVH 316
+ CE CT+ FA++++L H ++ Y C +C++++ + L+ H +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 183 CDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAH 232
C CG+SF K H+ +H C +C TF P L H+N H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVH 260
C C ++FA K H+ H F C +C +F P L HI H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIH 288
C C +SF K H++ +H + C+ C TF L H+ H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 267 CEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ 319
C C ++FA K H++ +H + C+ C ++ L H+ H ++
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSH 311
Y C EC K F++ L+ H Q +H G K Y C C K+++Q + L++H
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTH 339
Y C C K++++ + L+ H VH +K YKC +CG+ F+Q L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAH 227
K + C +CGK+F+ L H +H G + KC C K F+ LI H
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISH 255
C C K F+ L+ H H G + +KC C K+F+Q LI+H
Sbjct: 17 CVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINH 61
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 186 CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH 241
C K + +L H H G + +CDF C++ F+ L H H GV+ F+C
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKT 71
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCE--ECTKTFAQKQNLLSH 283
C + F++ +L +H ++ H G K + C C K FA+ L+ H
Sbjct: 72 CQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCD--HCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
C+K + +L H + H G + ++CD C + F++ L H + H G+K ++C+
Sbjct: 14 CNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKT 71
Query: 270 CTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSH 311
C + F++ +L +H + H G K ++C C K + + L+ H
Sbjct: 72 CQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 281 LSHVQA---IHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEH 334
LSH+Q H G K Y C+ C + +++ L H + ++C C R F++
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD 80
Query: 335 TLRTHTLSVHSGVR-LTCR 352
L+THT H+G + +CR
Sbjct: 81 HLKTHT-RTHTGEKPFSCR 98
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 291 IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT 350
+ Y C VC +SY +T+L H +KY C C ++F H + R
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 351 CRTCGLFCDSKRALTAHVREAH 372
C CG + + +++H++ H
Sbjct: 81 CLACGKSFINYQFMSSHIKSVH 102
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%)
Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCD 240
+ C C +S+ +L H N + C +C+K F H R++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 241 HCVKSFNQKPNLISHIKSVH 260
C KSF + SHIKSVH
Sbjct: 83 ACGKSFINYQFMSSHIKSVH 102
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 263 IKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYK 322
+ Y C C +++ +L H KY C C K + H ++Y+
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQ 80
Query: 323 CADCGRLFAQEHTLRTHTLSVHS 345
C CG+ F + +H SVHS
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHS 103
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG-VRIKCDFCDKTFAHKPNLIAHMNSAHN 233
KK+PC C K F L + T H H G R +C C K+F + + +H+ S H+
Sbjct: 49 KKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHS 103
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 235 VRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG-IKY 293
V + C C +S+ +L H KY C C K F + H + H G +Y
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRY 79
Query: 294 TCEVCSKSYNQVTNLLSHMTTVH 316
C C KS+ + SH+ +VH
Sbjct: 80 QCLACGKSFINYQFMSSHIKSVH 102
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAH--NGVRFKCDHCVKSFNQKPNLISHIKSVHE 261
+C C + + H N H ++H N + C C K F +K N+ +H+K +H+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQ--AQKYKCADCGRLFAQEHTLRTHTLSVH 344
Y C+VCS+ Y ++N H T H+ + Y C C + F ++ + H +H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIH 204
VK +PC C K FT K N+T HV IH
Sbjct: 38 VKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHE-GIK-YKCEECTKTFAQKQNLLSHVQAIH 288
++C C + + N H + H+ +K Y C C K F +K N+ +HV+ IH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIH-MGIK-YTCEVCSKSYNQVTNLLSHMTTVHQ 317
Y+C+ C++ + N H H +K Y C C K + + N+ +H+ +H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHE----GIKYKCEECTKTFAQKQNLLSHVQ 285
+ C HC K+F QK L H K H+ + C +C KTF ++ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIH----MGIKYTCEVCSKSYNQVTNLLSH 311
H G K Y C C KTF QKQ L H + H + + C C K++ + + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQ----KYKCADCGRLFAQEHTLRTHT 340
H G K Y C C K++ Q L H H + C+ CG+ F + +T+ H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIH----LGVRIKCDFCDKTFAHKPNLIAHMNS 230
K + C C K+F KQ L H H + C C KTF + + H ++
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 211 CDFCDKTFAHKPNLIAHMNSAHN----GVRFKCDHCVKSFNQKPNLISHI 256
C CDKTF K L H H+ F C C K+F ++ + H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 175 GPPVKKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMN 229
G CD CGK++T +L H+ + H G + CD+ C FA L H
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYR 59
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIK 257
H G R F+C C ++F++ +L H+K
Sbjct: 60 K-HTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 211 CDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK- 264
CD+ C KT+ +L AH+ + H G + + CD C F + L H + H G +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP 66
Query: 265 YKCEECTKTFAQKQNLLSHVQ 285
++C++C + F++ +L H++
Sbjct: 67 FQCQKCDRAFSRSDHLALHMK 87
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 239 CDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEE--CTKTFAQKQNLLSHVQAIHMGIK- 292
CD+ C K++ + +L +H+++ H G K Y C+ C FA+ L H + H G +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP 66
Query: 293 YTCEVCSKSYNQVTNLLSHM 312
+ C+ C +++++ +L HM
Sbjct: 67 FQCQKCDRAFSRSDHLALHM 86
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 186 CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH 241
CGK++T +L H+ + H G + CD+ C FA L H H G R F+C
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPFQCQK 70
Query: 242 CVKSFNQKPNLISHIK 257
C ++F++ +L H+K
Sbjct: 71 CDRAFSRSDHLALHMK 86
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 211 CDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK- 264
CD+ C KT+ +L AH+ + H G + + CD C F + L H + H G +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP 65
Query: 265 YKCEECTKTFAQKQNLLSHVQ 285
++C++C + F++ +L H++
Sbjct: 66 FQCQKCDRAFSRSDHLALHMK 86
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 239 CDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEE--CTKTFAQKQNLLSHVQAIHMGIK- 292
CD+ C K++ + +L +H+++ H G K Y C+ C FA+ L H + H G +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRP 65
Query: 293 YTCEVCSKSYNQVTNLLSHM 312
+ C+ C +++++ +L HM
Sbjct: 66 FQCQKCDRAFSRSDHLALHM 85
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K FAQK NL H Q IH G K
Sbjct: 13 YRCGECGKAFAQKANLTQH-QRIHTGEK 39
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
K + C +CGK+F K NLT H IH G +
Sbjct: 11 KPYRCGECGKAFAQKANLTQH-QRIHTGEK 39
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVR 348
Y+C +CG+ FAQ+ L H +H+G +
Sbjct: 13 YRCGECGKAFAQKANLTQHQ-RIHTGEK 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F Q +L +H Q IH G+K
Sbjct: 13 YKCNECGKVFTQNSHLANH-QRIHTGVK 39
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVR 348
YKC +CG++F Q L H +H+GV+
Sbjct: 13 YKCNECGKVFTQNSHLANHQ-RIHTGVK 39
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEG 262
++CD C K+F+QK +LI HI+ VH G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIR-VHTG 36
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
Y+C++C K F+QK +L+ H++ +H G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIR-VHTG 36
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + CDQCGK+F+ K +L H+ +H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIR-VHTG 36
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 251 NLISHIKSVHEGIKYKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTN 307
NL++++ V + Y C E C + F++ L H++ IH G K + C +C +++++ +
Sbjct: 8 NLLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDH 64
Query: 308 LLSHMTT 314
L +H+ T
Sbjct: 65 LTTHIRT 71
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 242 CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQA 286
C + F++ L HI+ +H G K ++C C + F++ +L +H++
Sbjct: 27 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKS 258
CD+ F+ L H+ H G + F+C C+++F++ +L +HI++
Sbjct: 27 CDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
K + C++CGK+FT K L H +H GV+
Sbjct: 9 KPYSCNECGKAFTFKSQLIVH-KGVHTGVK 37
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y C EC K F K L+ H + +H G+K
Sbjct: 11 YSCNECGKAFTFKSQLIVH-KGVHTGVK 37
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
K + C+QCGK+F+++ +LT H +IH G +
Sbjct: 11 KPYECNQCGKAFSVRSSLTTH-QAIHTGKK 39
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C +C K F+ + +L +H QAIH G K
Sbjct: 13 YECNQCGKAFSVRSSLTTH-QAIHTGKK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K F + NL +H Q IH G K
Sbjct: 13 YRCAECGKAFTDRSNLFTH-QKIHTGEK 39
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 191 TLKQNLTYHVNSIHLGVRIKC----DFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSF 246
T+ + Y + I +G R C D CD P + HN CD C F
Sbjct: 248 TVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRL-QCACQHNTCGGSCDRCCPGF 306
Query: 247 NQKPNLISHIKSVHEGIKYKCEEC 270
NQ+P + S +E C+ C
Sbjct: 307 NQQPWKPATTDSANE-----CQSC 325
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F + NL +H Q IH G K
Sbjct: 13 YKCYECGKAFRTRSNLTTH-QVIHTGEK 39
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 169 GHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
G G G K + C +CGK+F + NLT H IH G
Sbjct: 1 GSSGSSGTKEKPYKCYECGKAFRTRSNLTTH-QVIHTG 37
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTH 339
+ C +C +++++ +L +H+ T + + C CGR FA+ + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHM 289
F+C C+++F++ +L +HI++ H G K + C+ C + FA+ H H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAH 232
+K F C C ++F+ +LT H+ + H G + CD C + FA H + H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVH 316
++C C + F++ +L +H++ H G K + C++C + + + H H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K FA+K L+ H Q IH G K
Sbjct: 13 YECSECGKAFARKSTLIMH-QRIHTGEK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
VK + C QC K+F+LK L H S H GV+
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRS-HTGVK 39
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y C +C KTF+ K L+ H Q H G+K
Sbjct: 13 YGCSQCAKTFSLKSQLIVH-QRSHTGVK 39
>pdb|2ELW|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 37
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 290 GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ 319
GIK C C K Y+ V NL+ H+ +H Q
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDMHDPQ 36
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHE 261
+S +G++ C C K ++ NLI HI+ +H+
Sbjct: 2 SSGSSGIKQHCRFCKKKYSDVKNLIKHIRDMHD 34
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKCE+C K + ++ NL H Q +HMG K
Sbjct: 13 YKCEDCGKGYNRRLNLDMH-QRVHMGEK 39
>pdb|4ACO|A Chain A, Structure Of The Budding Yeast Ndc10 N-Terminal Domain
Length = 956
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 5 SYNTPSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEK-----FEILKS 59
++ +P + ST +++D FPPP L F + K ++Y LS + + E+L+
Sbjct: 408 NFKSPYTSYSTNAKKDPFPPPKDLLVQIFPEIDEYK-RHDYEGLSQNSRDFLDLMEVLRE 466
Query: 60 ISASFTPGYGGFLPN 74
S P F PN
Sbjct: 467 RFLSNLPWIYKFFPN 481
>pdb|2ELU|A Chain A, Solution Structure Of The 5th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 37
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 290 GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ 319
GIK C C K Y+ V NL+ H+ H Q
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDAHDPQ 36
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 206 GVRIKCDFCDKTFAHKPNLIAHMNSAHN 233
G++ C FC K ++ NLI H+ AH+
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDAHD 34
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
F+C HC KSF K NL++H + +H G K
Sbjct: 13 FECTHCGKSFRAKGNLVTH-QRIHTGEK 39
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C CGKSF K NL H IH G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTH-QRIHTG 37
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 238 KCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIH 288
+C +C K F L H+++ H G K YKCE C AQK +L H++ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+KCEEC K F Q L SH Q +H G K
Sbjct: 13 FKCEECGKRFTQNSQLHSH-QRVHTGEK 39
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 183 CDQCGKSFTLKQNLTYHVN---SIHLGVRIKCDFCDKTFAHKPNLIAHMNSAH 232
C+ CG + K +L +H +R C+FC K F ++ AH + +H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F NL +H Q IH G K
Sbjct: 13 YKCNECGKAFRAHSNLTTH-QVIHTGEK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F Q +L+ H + IH G K
Sbjct: 13 YKCNECGKVFTQNSHLVRH-RGIHTGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F+Q L H Q IH G K
Sbjct: 13 YKCNECGKAFSQTSKLARH-QRIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGV 207
K + C CGK+FT K L H IH GV
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVH-QGIHTGV 36
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+KC EC KTF Q +L H Q IH G K
Sbjct: 13 FKCNECKKTFTQSSSLTVH-QRIHTGEK 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHN 233
K FPC + C K FT +LT H + H G + CD CD F K N+ H N HN
Sbjct: 32 KPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 90
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
K F C +CGK+FT K L+ H IH G +
Sbjct: 11 KHFECTECGKAFTRKSTLSMH-QKIHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 180 KFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNS 230
K+ C++CG L H+ + H VR C +C+ +F K NL HM S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
F+CD C KSF Q+ L SH + +H G K
Sbjct: 13 FRCDTCDKSFRQRSALNSH-RMIHTGEK 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K F++K L+SH Q H G K
Sbjct: 13 YECHECGKAFSRKYQLISH-QRTHAGEK 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
F C +CGK FT K NL H IH G R
Sbjct: 13 FICSECGKVFTHKTNLIIH-QKIHTGER 39
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
+ C EC K F K NL+ H Q IH G
Sbjct: 13 FICSECGKVFTHKTNLIIH-QKIHTG 37
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
Y+C EC K F +K L+SH Q H G
Sbjct: 11 YECSECGKAFNRKDQLISH-QRTHAG 35
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 237 FKCDHCVKSFNQKPNLISHIKS 258
++C C K+FN+K LISH ++
Sbjct: 11 YECSECGKAFNRKDQLISHQRT 32
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C+EC K F+Q +L+ H Q +H G K
Sbjct: 13 YECKECGKAFSQTTHLIQH-QRVHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F Q +L H + IH G K
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEK 39
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F Q +L H + IH G K
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
++CEEC K F Q +L SH Q +H G K
Sbjct: 13 FQCEECGKRFTQNSHLHSH-QRVHTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 264 KYKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+YKC EC K F++ L H Q IH G K
Sbjct: 12 RYKCNECGKVFSRNSQLSQH-QKIHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
VK + C++CGK+F++ +LT H IH G
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTH-QVIHTG 37
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+KC EC K+F Q +L+ H Q IH G K
Sbjct: 13 HKCNECGKSFIQSAHLIQH-QRIHTGEK 39
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 214 CDKTFAHKPNLIAHMNSAHNGVRFKCDHCV---------KSFNQKPNLISHIKSVHEGIK 264
CD+TF+ L+ H+ H G + +H KSF K L++HI+ VH G K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEK 89
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKC EC K F Q +L +H + IH G K
Sbjct: 13 YKCNECGKVFTQNSHLTNHWR-IHTGEK 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y C EC KTF+QK L +H Q H G K
Sbjct: 13 YGCNECGKTFSQKSILSAH-QRTHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K F QK L H Q IH G K
Sbjct: 13 YECSECGKAFIQKSTLSMH-QRIHRGEK 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
Y+C+EC K+F QK +L H + IH G
Sbjct: 11 YECQECGKSFRQKGSLTLH-ERIHTG 35
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+KC+EC K F Q +L SH++ IH G K
Sbjct: 13 FKCKECGKAFRQNIHLASHLR-IHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVR 348
YKC+DCG+ F + LR H H+G R
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQ-KCHTGER 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
K F C +CGKSF++ L H IH G +
Sbjct: 11 KPFECAECGKSFSISSQLATH-QRIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIKYT 294
Y C EC K F+ K L+ H Q IH G K +
Sbjct: 11 YGCNECGKDFSSKSYLIVH-QRIHTGEKLS 39
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K F Q +L+ H + H G K
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEK 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F LK L H IH G
Sbjct: 9 KPYVCNECGKAFGLKSQLIIH-ERIHTG 35
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 33/114 (28%)
Query: 92 AEYLEIHFCFVYTWVKTEPNQTNHPPSETEDS--------DDPLGESMVVEPEYTPVTQI 143
+E E+ +C + P++T PP E+EDS +D GE + + +
Sbjct: 639 SELFELDYCLKGLKL---PSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK- 694
Query: 144 GGTAGLEFNRSQFEKTFQNY---------------SMTTTGHRGGKGPPVKKFP 182
E S F KTF++Y S+ G+ G P V FP
Sbjct: 695 ------ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNHGNNVPTVAAFP 742
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
F+C C K+FN K NLI H ++ H G K
Sbjct: 13 FECSECQKAFNTKSNLIVHQRT-HTGEK 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVR 348
YKC+DCG+ F ++ L H S H+G R
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQS-HTGER 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
YKCEEC K F +++L +H +H G K
Sbjct: 13 YKCEECGKGFICRRDLYTH-HMVHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
Y+C EC K F+Q L H Q +H G K
Sbjct: 13 YQCNECGKAFSQTSKLARH-QRVHTGEK 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
Y+C+EC K+F+Q+ +L H + +H G
Sbjct: 11 YQCKECGKSFSQRGSLAVH-ERLHTG 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,281,388
Number of Sequences: 62578
Number of extensions: 574230
Number of successful extensions: 1939
Number of sequences better than 100.0: 149
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1169
Number of HSP's gapped (non-prelim): 698
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)