RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2838
(458 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 125 bits (317), Expect = 3e-34
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 14/171 (8%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
K + C +CGKSF+ +L H H G + KC C K+F+ K +L H + H G +
Sbjct: 20 KPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEKP 77
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
+KC C KSF+Q+ NL +H + H G K Y C EC K+F+Q +L +H Q H G K Y
Sbjct: 78 YKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYK 135
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
C C KS+++ NL +H T H +K YKC +CG+ F++ L RTHT
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 98.7 bits (247), Expect = 3e-24
Identities = 56/159 (35%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 217 TFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTF 274
+ + +A + G + + C C KSF++ +L H + H G K YKC EC K+F
Sbjct: 2 SEFGSSSSVAQA-ALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSF 59
Query: 275 AQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQ 332
+ K++L H Q H G K Y C C KS++Q NL +H T H +K Y C +CG+ F+Q
Sbjct: 60 SDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQ 117
Query: 333 EHTLRTHTLSVHSGVRL-TCRTCG-LFCDSKRALTAHVR 369
LR H H+G + C CG F L H R
Sbjct: 118 LAHLRAHQ-RTHTGEKPYKCPECGKSFSRE-DNLHTHQR 154
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 101 bits (253), Expect = 1e-25
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 19/155 (12%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIK--------CDFCDKTFAHKPNLIAHMNS 230
D C + F ++ L +H+NS H+ K C + F + L+ HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 231 AHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEE--CTKTFAQKQNLLSHV 284
H G + KC C KS+++ NL +H++S H G K Y CE C+K F+ + H
Sbjct: 62 -HTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 285 QAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVH 316
H K Y C++ C+K Y ++L H+ TVH
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 99.6 bits (249), Expect = 4e-25
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR---FKCDHC-----VKSFNQKPNLISHIKSVHE 261
+ D C + F + L+ H+NS H F C ++ F + L+ H++ H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR-RHT 63
Query: 262 GIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCE--VCSKSYNQVTNLLSHMTTV 315
G K +KC E C K++++ +NL +H H G K Y CE CSK+++ ++ H
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 316 HQAQK-YKC--ADCGRLFAQEHTLRTHTLSVHSG 346
H +K Y C C + + +LR H + G
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKH-VKTVHG 155
Score = 65.3 bits (160), Expect = 7e-13
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 16/91 (17%)
Query: 265 YKCEECTKTFAQKQNLLSHV--QAIHMGIK-YTCEVC-----SKSYNQVTNLLSHMTTVH 316
+ + C++ F ++ L+ H+ + IH K + C + + L+ HM H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR-H 62
Query: 317 QAQK-YKC--ADCGRLFAQEHTL----RTHT 340
+K +KC C + +++ L R+HT
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Score = 36.0 bits (84), Expect = 0.008
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 8/57 (14%)
Query: 321 YKCADCGRLFAQEHTLRTH--TLSVHSGVR-LTCRTCGLFCDSKR-----ALTAHVR 369
+ C + F + L H + +H + C G + + L H+R
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 96.8 bits (242), Expect = 2e-24
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM--NSAHNGV 235
C C K F K L H N H G + +C C K + K NL+ H N +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 236 R-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+ F C C ++F ++ L H H G YKC C++ F QK++L SH+ +H G
Sbjct: 65 QVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 96.8 bits (242), Expect = 2e-24
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 231 AHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSH--VQA 286
+G +C C K F K L H H G K ++C +C K + +K+NLL H
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVH 344
++ + +TC VC +++ + L HM + H + YKC+ C + F Q+ L++H + +H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 345 SG 346
SG
Sbjct: 119 SG 120
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 98.8 bits (247), Expect = 2e-24
Identities = 48/184 (26%), Positives = 66/184 (35%), Gaps = 27/184 (14%)
Query: 179 KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKCD--FCDKTFAHKPNLIAHMNSAHN 233
K++ C CG ++ L H H G + C C+K F +L H + H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HT 68
Query: 234 GVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK---YKC--EECTKTFAQKQNLLSHVQ 285
G + F CD C F K N+ H IK Y C E C K F + L H Q
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVH-Q 126
Query: 286 AIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQK----YKCADCGRLFA--QEHTL 336
H Y C E C K ++ + L H H C+ G+ + +H
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Query: 337 RTHT 340
H
Sbjct: 186 ECHQ 189
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 88.1 bits (219), Expect = 7e-21
Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 31/173 (17%)
Query: 158 KTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKT 217
+ Q + + P C ++F+ L HV +
Sbjct: 5 SSGQPIKQELSCKWIDEAQ--LSRPKKSCDRTFSTMHELVTHVT-MEHV----------- 50
Query: 218 FAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTF 274
P + H +C KSF K L++HI+ VH G K + C C K F
Sbjct: 51 --GGPE-----QNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIF 102
Query: 275 AQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVHQAQK-YKC 323
A+ +NL H + H G K + CE C + + ++ HM H + K
Sbjct: 103 ARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPS 153
Score = 76.6 bits (189), Expect = 8e-17
Identities = 40/169 (23%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 187 GKSFTLKQNLTYHVNS--IHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCV 243
G S + Q + ++ I CD+TF+ L+ H+ H G + +H
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 244 KSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSK 300
+C K+F K L++H +H G K + C C K
Sbjct: 61 YW-------------------EECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGK 100
Query: 301 SYNQVTNLLSHMTTVHQAQK-YKCA--DCGRLFAQEHTLRTHTLSVHSG 346
+ + NL H T H +K +KC C R FA + H VH+
Sbjct: 101 IFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHM-HVHTS 147
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 82.9 bits (206), Expect = 1e-19
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR- 236
K +PC QCGKSFT K H S+HLG+R C C K F K +L+ HM H G++
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKP 65
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLS 282
++C+ C K F + + H+ K Y+ + + + S
Sbjct: 66 YECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTTEASGPSS 109
Score = 82.1 bits (204), Expect = 3e-19
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
+ C C KSF K H S+H G++ Y C C K F K +L+ H IH GIK Y
Sbjct: 11 YPC-QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYE 67
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRT 338
C +C+K + + H V K Y+ A + + +
Sbjct: 68 CNICAKRFMWRDSFHRH---VTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 67.9 bits (167), Expect = 3e-14
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTV 315
S G K Y C+ C K+F K H ++H+G++ Y C VC K + +L+ HM
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI- 59
Query: 316 HQAQK-YKCADCGRLFAQEHTL--RTHT 340
H K Y+C C + F + +
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 44.0 bits (105), Expect = 7e-06
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVH 344
G K Y C+ C KS+ + HM+ H + Y C CG+ F +H L H + +H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60
Query: 345 SGVR-LTCRTCG 355
+G++ C C
Sbjct: 61 TGIKPYECNICA 72
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 81.7 bits (203), Expect = 2e-19
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
KC+ C K F++K L +H H G+K YKC+ C A +L H IH + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFK 66
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQK-YKCA 324
C++C + + L H+ + H
Sbjct: 67 CQICPYASRNSSQLTVHLRS-HTGDSGPSSG 96
Score = 73.6 bits (182), Expect = 2e-16
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQ 317
+KCE C K F++K L +H H G+K Y C+ C + ++L H+ H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HS 60
Query: 318 AQK-YKCADCGRLFAQEHTL----RTHT 340
++ +KC C L R+HT
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 72.1 bits (178), Expect = 6e-16
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 32/119 (26%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
C+ CGK F+ K L H+ H GV KP +K
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMR-CHTGV-------------KP--------------YK 38
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
C C + +L H++ +H + +KC+ C L H H G +
Sbjct: 39 CKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVH-LRSHTGDSGPSS 95
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 82.6 bits (205), Expect = 2e-19
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 210 KCD--FCDKTFAHKPNLIAHMNSAHNGVR-FKCD--HCVKSFNQKPNLISHIKSVHEGIK 264
C C+K + +L H H G + ++CD C + F++ L H + H G+K
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVK 65
Query: 265 -YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTT 314
++C+ C + F++ +L +H H G K ++C C K + + L+ H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 77.9 bits (193), Expect = 9e-18
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHN 233
+ F C C K + +L H H G + +CDF C++ F+ L H H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HT 62
Query: 234 GVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE--ECTKTFAQKQNLLSHVQAIH 288
GV+ F+C C + F++ +L +H + H G K + C C K FA+ L+ H +H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVRH-HNMH 119
Score = 67.9 bits (167), Expect = 3e-14
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 265 YKCEE--CTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLSHMTTVHQAQ 319
+ C C K + + +L H H G K Y C+ C + +++ L H H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGV 64
Query: 320 K-YKCADCGRLFAQEHTL----RTHT 340
K ++C C R F++ L RTHT
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHT 90
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 81.0 bits (201), Expect = 1e-18
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK- 292
C H C K F + H+ H G + + C EC K F + L H Q +H G K
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKP 62
Query: 293 YTCEV--CSKSYNQVTNLLSHMTTVHQAQK-YKCA--DCGRLFAQEHTLRTHTLSVHSG 346
+ C C K ++ NL +H+ H + Y C C + FAQ L++H L H+
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHIL-THAK 119
Score = 77.9 bits (193), Expect = 1e-17
Identities = 38/146 (26%), Positives = 52/146 (35%), Gaps = 43/146 (29%)
Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAH--KPNLIAHMNSAHNG 234
+ C C K F + H + H +
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH-------LHT----------HGPRV------------ 34
Query: 235 VRFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGI 291
C C K+F + L H VH G K ++C E C K F+ NL +H IH G
Sbjct: 35 --HVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGD 90
Query: 292 K-YTCEV--CSKSYNQVTNLLSHMTT 314
+ Y C C+K + Q TNL SH+ T
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 61.8 bits (151), Expect = 6e-12
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 35/119 (29%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
+ C +CGK+F L H +H G KP F+
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQ-LVHTG-------------EKP--------------FQ 64
Query: 239 CDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK 292
C C K F+ NL +H++ +H G + Y C + C K FAQ NL SH H K
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSH-ILTHAKAK 121
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 79.0 bits (196), Expect = 3e-18
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
C FC + F NL+ H + H R + CD C K+F ++ +L H + +H K +KC
Sbjct: 19 ICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 268 EECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
+EC K F Q + L H + +HM T
Sbjct: 77 QECGKGFCQSRTLAVH-KTLHMQTSSPTA 104
Score = 76.7 bits (190), Expect = 2e-17
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNL 308
+ + K + C+ C + F + NLL H + H + YTC++C K++ + +L
Sbjct: 4 GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHL 61
Query: 309 LSHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
H H +K +KC +CG+ F Q TL H
Sbjct: 62 RDHRYI-HSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 47.4 bits (114), Expect = 3e-07
Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 30/90 (33%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
+ + CD C K+F + +L H IH KP FK
Sbjct: 44 RPYTCDICHKAFRRQDHLRDH-RYIHSK-------------EKP--------------FK 75
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
C C K F Q L H K++H
Sbjct: 76 CQECGKGFCQSRTLAVH-KTLHMQTSSPTA 104
Score = 30.1 bits (69), Expect = 0.44
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 307 NLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRAL 364
+ +K + C CGR F + + L H H+ R TC C + L
Sbjct: 4 GSSGGRLP-SKTKKEFICKFCGRHFTKSYNLLIHE-RTHTDERPYTCDICHKAFRRQDHL 61
Query: 365 TAHVR 369
H
Sbjct: 62 RDHRY 66
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 77.5 bits (192), Expect = 6e-18
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKC 323
++C C + F++ +L +H H G K + C++C + + + H
Sbjct: 4 FQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDI-QHILPILE 61
Query: 324 ADCGRLFAQEHTLRTHTLS--VHSG 346
L ++ + L G
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVG 86
Score = 68.3 bits (168), Expect = 9e-15
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 31/117 (26%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRF 237
+K F C C ++F+ +LT H+ H G KP F
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIR-THTG-------------EKP--------------F 32
Query: 238 KCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQA--IHMGIK 292
CD C + F + H + + ++ + ++ +L + V +G +
Sbjct: 33 ACDICGRKFARSDERKRHRD-IQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 76.7 bits (190), Expect = 1e-17
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
F C C KSF + L +H +H + Y C+ C K F QK ++ H IH G K +
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK 59
Query: 295 CEVCSKSYNQVTNLLSHM 312
C+VC K+++Q +NL++H
Sbjct: 60 CQVCGKAFSQSSNLITHS 77
Score = 72.5 bits (179), Expect = 3e-16
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
C C K+F L H+ H+ R + C +C K F+QK ++ H +H G K +KC
Sbjct: 3 DCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 268 EECTKTFAQKQNLLSHVQAIHMG 290
+ C K F+Q NL++H H G
Sbjct: 61 QVCGKAFSQSSNLITH-SRKHTG 82
Score = 70.9 bits (175), Expect = 9e-16
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YK 322
+ C+ C K+F + L +H IH + Y C+ C K ++Q +++ H H +K +K
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHK 59
Query: 323 CADCGRLFAQEHTLRTH 339
C CG+ F+Q L TH
Sbjct: 60 CQVCGKAFSQSSNLITH 76
Score = 44.7 bits (107), Expect = 2e-06
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
+ +PC CGK F K ++ H IH G + KC C K F+ NLI H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHS 77
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 75.6 bits (187), Expect = 3e-17
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVH--EGIK-Y 265
C+ C K F +L H S H+G + + C C F +K + H H K Y
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPY 66
Query: 266 KCEECTKTFAQKQNLLSHVQAIHMGIK 292
C+ C K F++ +L H++ +H G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 75.6 bits (187), Expect = 4e-17
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVH- 316
G CE C K F +L H + H G K Y+C VC + + + H+ + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HD 59
Query: 317 -QAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
K Y C CG+ F++ L H VHSG
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.9 bits (89), Expect = 7e-04
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 158 KTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
F+ + R G K + C CGK F+ +L H+ +H G
Sbjct: 43 LRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 73.7 bits (182), Expect = 2e-16
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK- 320
Y C E C + F+Q +L H IH G K + C +C +++++ +L +H+ T H +K
Sbjct: 5 YACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKP 62
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
+ C CGR FA+ + H
Sbjct: 63 FACDICGRKFARSDERKRHTKIHL 86
Score = 71.0 bits (175), Expect = 1e-15
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 210 KCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-Y 265
C CD+ F+ +L H+ H G + F+C C+++F++ +L +HI+ H G K +
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPF 63
Query: 266 KCEECTKTFAQKQNLLSHVQAIHMGIK 292
C+ C + FA+ H IH+ K
Sbjct: 64 ACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 45.9 bits (110), Expect = 7e-07
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
K F C C ++F+ +LT H+ H G + CD C + FA H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHT 82
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 66.0 bits (162), Expect = 4e-14
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 223 NLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVH--EGIK-YKCEECTKTFAQKQ 278
+ + + H+G + ++C C F Q + HI E + + C C A+K
Sbjct: 2 SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKS 59
Query: 279 NLLSHVQAIHMGIK-YT 294
+L H++ H +
Sbjct: 60 DLGVHLRKQHSYSGPSS 76
Score = 60.6 bits (148), Expect = 4e-12
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG--IK-YTCEVCSKSYNQVT 306
+ S + H G K Y+C C F Q + H + + C C + +
Sbjct: 2 SSGSSGR-THSGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKS 59
Query: 307 NLLSHMTTVH 316
+L H+ H
Sbjct: 60 DLGVHLRKQH 69
Score = 57.9 bits (141), Expect = 3e-11
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 279 NLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVH--QAQKYKCADCGRLFAQEHT 335
+ S H G K Y C +C + Q + H+ H K+ C C + A++
Sbjct: 2 SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 336 LRTHTLSVHSG 346
L H HS
Sbjct: 61 LGVHLRKQHSY 71
Score = 56.8 bits (138), Expect = 1e-10
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIK---CDFCDKTFAHKPNLIAHMNSAHNG 234
K + C C FT + H+ + C CD A K +L H+ H+
Sbjct: 14 KPYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 39.8 bits (94), Expect = 1e-04
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 175 GPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
V KF C C K +L H+ H
Sbjct: 40 TENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.8 bits (153), Expect = 7e-13
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 25/94 (26%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
C+ CG + K +L +H H +T A F
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR-KH----------AETVAALR--------------FP 40
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTK 272
C+ C K F + ++ +H H + +E +
Sbjct: 41 CEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 62.0 bits (151), Expect = 1e-12
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 237 FKCDHCVKSFNQKPNLISHIK--SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIKY 293
+C+ C + QK +L H + + + CE C K F + ++ +H H +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 294 TCEVCSK 300
+ S
Sbjct: 68 APQESSG 74
Score = 60.9 bits (148), Expect = 3e-12
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK----YTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
+CE C T QK +L H + H + CE C K + + ++ +H + H A
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 321 YKCADC 326
+
Sbjct: 67 LAPQES 72
Score = 54.7 bits (132), Expect = 6e-10
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 293 YTCEVCSKSYNQVTNLLSHMT--TVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVRL 349
CE+C + Q +L H A + C CG+ F + ++ H H + L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 350 TCRTC 354
+
Sbjct: 68 APQES 72
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 62.9 bits (154), Expect = 8e-13
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-----YTCEVCSKSYNQ 304
+ S H G K Y C C KTF QKQ L H + + C C K++ +
Sbjct: 2 SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 305 VTNLLSHMTTVHQAQK-YKCADCGRLF 330
+ H + + G
Sbjct: 60 RNTMARHADN-CAGPDGVEGENSGPSS 85
Score = 60.2 bits (147), Expect = 6e-12
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 26/97 (26%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
K + C C K+F KQ L H + F F
Sbjct: 14 KPYACSHCDKTFRQKQLLDMH-FKRYHD---------PNFVPAA--------------FV 49
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTF 274
C C K+F ++ + H G + E +
Sbjct: 50 CSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPSS 85
Score = 38.7 bits (91), Expect = 3e-04
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 173 GKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTF 218
F C +CGK+FT + + H G ++ + +
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPSS 85
Score = 30.2 bits (69), Expect = 0.25
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 307 NLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVRL-----TCRTCGLFCDS 360
+ S T H +K Y C+ C + F Q+ L H + C CG
Sbjct: 2 SSGSSGRT-HTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 361 KRALTAHVR 369
+ + H
Sbjct: 60 RNTMARHAD 68
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 62.1 bits (152), Expect = 1e-12
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+KCD C SF K NL SH K+VH G K Y+C C F + NL +H IH G K
Sbjct: 18 YKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEK 72
Score = 61.3 bits (150), Expect = 2e-12
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 251 NLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNL 308
+ H + K YKC+ C +F K NL SH + +H G K Y C +C +N+ NL
Sbjct: 4 HHHHH-SHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANL 61
Query: 309 LSHM 312
+H
Sbjct: 62 KTHT 65
Score = 53.6 bits (130), Expect = 1e-09
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 279 NLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTL 336
+ H + K Y C+ C S+ NL SH T H +K Y+C CG F + L
Sbjct: 4 HHHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANL 61
Query: 337 RTHTLSVHSG 346
+THT +HSG
Sbjct: 62 KTHT-RIHSG 70
Score = 46.7 bits (112), Expect = 3e-07
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
K + CD+C SF K NL H ++H G + +C+ C F NL H
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHT 65
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 61.4 bits (150), Expect = 1e-12
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 256 IKSVHEGIK-YKCEECTKTFAQKQNLLSHVQ-AIHMGIK-YTCEVCSKSYNQVTNLLSHM 312
++ EG Y+C+ C++ + N H + +K Y C C K + + N+ +H+
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 313 TTVHQ 317
+H+
Sbjct: 61 KIIHK 65
Score = 61.0 bits (149), Expect = 2e-12
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSV-HEGIK-YKCEECTKTFAQKQNLLSHVQAIH 288
++C C + + N H + +K Y C C K F +K N+ +HV+ IH
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 49.5 bits (119), Expect = 2e-08
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHV-NSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGV 235
+ C C + +T N H S V+ C FC K F K N+ AH+ + +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI-IHKI 66
Score = 35.6 bits (83), Expect = 0.002
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 165 MTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIH 204
T+ R VK +PC C K FT K N+T HV IH
Sbjct: 30 YVTSHKRN-----VKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.5 bits (75), Expect = 0.024
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSV-HSGVRL-TCRTCG 355
Y+C C R++ H ++ V++ C C
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCF 47
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 60.6 bits (148), Expect = 3e-12
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
F C+ C ++F ++ +L H +S H K Y C C + F ++ L+ H Q IH G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 49.0 bits (118), Expect = 3e-08
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 28/82 (34%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCA 324
+ CE CT+ FA++++L H H K Y C
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEK---------------------------PYPCG 34
Query: 325 DCGRLFAQEHTLRTHTLSVHSG 346
C R F + L H +HSG
Sbjct: 35 LCNRAFTRRDLLIRHAQKIHSG 56
Score = 46.3 bits (111), Expect = 3e-07
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNG 234
+ F C+ C ++F +++L H H + C C++ F + LI H H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 60.6 bits (148), Expect = 3e-12
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
KC C S + K L H + +H + +KC C+ Q NL H G
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFHGDM 64
Score = 58.7 bits (143), Expect = 1e-11
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
S KC EC+ + + K L H + IH + + C CS Q +NL HM
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 54.0 bits (131), Expect = 7e-10
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
C +C S + K L H IH R KC++C NL HM
Sbjct: 8 HPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 60.5 bits (148), Expect = 5e-12
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 219 AHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQ 276
+ R +KCD C KSF+ +L H + H G K YKC+EC K F Q
Sbjct: 1 GSSGSSGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQ 58
Query: 277 KQNLLSHVQAIHMGIK 292
+ +L+ H +H G
Sbjct: 59 RSHLIGH-HRVHTGSG 73
Score = 52.1 bits (126), Expect = 5e-09
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 275 AQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQ 332
+ + + Y C+ C KS++ ++L H T H +K YKC +CG+ F Q
Sbjct: 1 GSSGSSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQ 58
Query: 333 EHTL----RTHT 340
L R HT
Sbjct: 59 RSHLIGHHRVHT 70
Score = 44.0 bits (105), Expect = 3e-06
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 30/89 (33%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
+++ CD+CGKSF+ +L+ H H G KP +K
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTG-------------EKP--------------YK 48
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIK-YK 266
CD C K+F Q+ +LI H VH G
Sbjct: 49 CDECGKAFIQRSHLIGH-HRVHTGSGPSS 76
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 58.4 bits (142), Expect = 3e-11
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 8/85 (9%)
Query: 210 KCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK 264
C F C K F L H S H ++C H C K F+ L H K VH G
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYP 60
Query: 265 -YKCEECTKTFAQKQNLLSHVQAIH 288
K + C+ L HV H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 57.6 bits (140), Expect = 6e-11
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGI 291
+ C C K+F + L H + H Y+C E C K F+ L H + +H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAGY 59
Query: 292 K-YTCEVCSKSYNQVTNLLSHMTTVH 316
+ CS T L H+ H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 49.5 bits (119), Expect = 4e-08
Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 265 YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTVHQAQ 319
Y C E C K F + L H Q H Y C E C K ++ + L H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGY 59
Query: 320 K-YKCADCGRLFAQEHTLRTHTLSVH 344
K C + H H
Sbjct: 60 PCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 179 KKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVRI-KCDFCDKTFAHKPNLIAHMNSAH 232
+ C C K F+L L H +H G K D C + H+ H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 58.3 bits (142), Expect = 4e-11
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCSKSYNQVTNLLSHMTTV 315
C KT+ + +L +H H G K Y C + C + + L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK- 59
Query: 316 HQAQK-YKCADCGRLFAQEHTLRTH 339
H + ++C C R F++ L H
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 57.9 bits (141), Expect = 5e-11
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK-Y 265
C KT+ +L AH+ + H G + + CD C F + L H + H G + +
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPF 66
Query: 266 KCEECTKTFAQKQNLLSHVQAIHM 289
+C++C + F++ +L H H
Sbjct: 67 QCQKCDRAFSRSDHLALH-MKRHF 89
Score = 57.5 bits (140), Expect = 7e-11
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCD--FCDKTFAHKPNLIAHMNSAHNGV 235
CGK++T +L H+ H G + CD C FA L H H G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGH 63
Query: 236 R-FKCDHCVKSFNQKPNLISHIK 257
R F+C C ++F++ +L H+K
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMK 86
Score = 57.2 bits (139), Expect = 9e-11
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK 292
C K++ + +L +H++ H G K Y C + C FA+ L H H G +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHR 64
Query: 293 -YTCEVCSKSYNQVTNLLSHMTT 314
+ C+ C +++++ +L HM
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKR 87
Score = 30.6 bits (70), Expect = 0.23
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHVNSIHL 205
+ F C +C ++F+ +L H+ H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMK-RHF 89
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 57.5 bits (140), Expect = 4e-11
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
+ C C K+F++ L+ H + VH G K YKC EC K F+Q L++H Q IH
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSGP 69
Score = 46.7 bits (112), Expect = 2e-07
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 280 LLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTL- 336
IH G K Y C C K++++ + L+ H VH +K YKC +CG+ F+Q L
Sbjct: 2 SSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLI 59
Query: 337 ---RTHT 340
R HT
Sbjct: 60 NHQRIHT 66
Score = 44.0 bits (105), Expect = 2e-06
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAH 227
K + C +CGK+F+ L H +H G + KC C K F+ LI H
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH 61
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 57.6 bits (140), Expect = 5e-11
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 179 KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAHKPNLIAHMNSAHN 233
PCD CG+ F+ +Q L +H H+ + C C K+F K +L HM H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HS 64
Query: 234 GVR-FKCDHCVKSF 246
R + C+ S
Sbjct: 65 DTRDYICEFSGPSS 78
Score = 57.2 bits (139), Expect = 8e-11
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 260 HEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCE--VCSKSYNQVTNLLSHMT 313
G C C + F+ +Q L H + H+ K ++C C KS+N +L HM
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 314 TVHQAQK-YKCADCGRLF 330
H + Y C G
Sbjct: 62 L-HSDTRDYICEFSGPSS 78
Score = 26.7 bits (60), Expect = 3.5
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 321 YKC--ADCGRLFAQEHTLRTHTLSVHSGVR-LTC--RTCG-LFCDSKRALTAHVR 369
C CGR+F+ L H H + +C CG F K L H++
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH-LKEHMK 61
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 58.2 bits (140), Expect = 7e-11
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 223 NLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEG-----IKYKCEECTKTFAQK 277
+ + + +F+C C +++ L H+ + +K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 278 QNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
++LL C C S+ + +L HM QK
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 53.2 bits (127), Expect = 4e-09
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRI-----KCDFCDKTFAHKPNLIAHMNSAHN 233
KF C C ++ LT H+N + + K +L+
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 234 GVRFKCDHCVKSFNQKPNLISHIKSVH 260
KC +C SF +L H+
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 50.9 bits (121), Expect = 3e-08
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 7/99 (7%)
Query: 247 NQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIH-----MGIKYTCEVCSK 300
+ + + S+ G ++C++C+ + L H+
Sbjct: 2 SSGSSGKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 301 SYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTH 339
S + +LL + KC CG F L H
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 48.6 bits (115), Expect = 2e-07
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 275 AQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHM-TTVH----QAQKYKCADCGRL 329
+ + + K+ C+ CS +Y+ + L HM T H +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 330 FAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCE 376
++ +L + L C CG +S + L+ H+ + +
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 37.8 bits (87), Expect = 0.001
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 165 MTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNL 224
M TGH + + S K++L +KC +C +F +L
Sbjct: 39 MNETGHYRDDNH--ETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDL 96
Query: 225 IAHMNSAH 232
HM
Sbjct: 97 SVHMIKTK 104
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 54.9 bits (133), Expect = 2e-10
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 256 IKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQ 304
S K Y C+ C K F++ +L H++ +H + + C+V +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 54.9 bits (133), Expect = 3e-10
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 229 NSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQ 276
S+ + + + C C K F++ +L HIK VH + +KC+ +
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 45.3 bits (108), Expect = 6e-07
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQ 332
+ K Y C+ C K +++ +L H+ VH +++ +KC +
Sbjct: 4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 44.1 bits (105), Expect = 2e-06
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFA 219
K + C CGK F+ +L H+ +H R KC +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQ 248
C C K F+ +L H+ H R KC V +
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 314 TVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCG 355
+ K Y C CG+ F++ L H VH+ R C+
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 55.7 bits (135), Expect = 4e-10
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGI 291
CD+ C K + + +L +H+++ H G K YKC E C FA+ L H + H G
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGA 73
Query: 292 K-YTCEVCSKSYNQVTNLLSHMTT 314
K + C VC++S+++ +L HM
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKR 97
Score = 54.2 bits (131), Expect = 1e-09
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 245 SFNQKPNLISHIKSVHEGIKYKCE--ECTKTFAQKQNLLSHVQAIHMGIK-YTC--EVCS 299
S + + + C+ CTK + + +L +H H G K Y C E C
Sbjct: 2 SSGSSGPDLEKRR------IHYCDYPGCTKVYTKSSHLKAH-LRTHTGEKPYKCTWEGCD 54
Query: 300 KSYNQVTNLLSHMTTVHQAQK-YKCADCGRLFAQEHTLRTH 339
+ + L H H K ++C C R F++ L H
Sbjct: 55 WRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 53.8 bits (130), Expect = 2e-09
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 210 KCDF--CDKTFAHKPNLIAHMNSAHNGVR-FKCDH--CVKSFNQKPNLISHIKSVHEGIK 264
CD+ C K + +L AH+ + H G + +KC C F + L H + H G K
Sbjct: 17 YCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAK 74
Query: 265 -YKCEECTKTFAQKQNLLSHV 284
++C C ++F++ +L H+
Sbjct: 75 PFQCGVCNRSFSRSDHLALHM 95
Score = 49.2 bits (118), Expect = 8e-08
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 167 TTGHRGGKGPPVKKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKC--DFCDKTFAHK 221
++G G + CD C K +T +L H+ H G + KC + CD FA
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARS 60
Query: 222 PNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIK 257
L H H G + F+C C +SF++ +L H+K
Sbjct: 61 DELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMK 96
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 53.8 bits (128), Expect = 5e-09
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 186 CGKSFTLKQNLTYHVNSIHLGVRIKCD----FCDKTFAHKPNLIAHMNSAHNGVRFKCDH 241
TL++ YH + I+ + + + + + ++ +F C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 242 CVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMG 290
C+ F+ +L HI+ C C K F + L HV H
Sbjct: 80 CLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 51.9 bits (123), Expect = 2e-08
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCE 296
++ + L K + I + + + L + A ++ C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYRLLASKAISQFVCP 78
Query: 297 VCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVR 348
+C ++ +L H+ C C + F + H H+
Sbjct: 79 LCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKKHNICV 128
Score = 45.3 bits (106), Expect = 4e-06
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 5/118 (4%)
Query: 258 SVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQ 317
S H+GI + + L + + I T + + ++ L +
Sbjct: 15 SNHKGIF--IHVTLEELKRYHQLTPEQKRLIRAIVKTL-IHNPQLLDESSYLYRLLASKA 71
Query: 318 AQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC 375
++ C C F+ +L+ H C C S + HV + H C
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKHNIC 127
Score = 42.6 bits (99), Expect = 3e-05
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 2/60 (3%)
Query: 177 PVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVR 236
+ +F C C F+ +L H+ C C K F + + H+ HN
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNICV 128
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 51.4 bits (122), Expect = 2e-08
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 226 AHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQ 285
+ + N ++C C + SH + C C+ F + H +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEH-E 62
Query: 286 AIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ 319
+ K TC C +++ ++ H VH
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 50.7 bits (120), Expect = 3e-08
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 199 HVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKS 258
+ + +C C+ + +H N C +C F H +S
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEH-ES 63
Query: 259 VHEGIKYKCEECTKTFAQKQNLLSHVQAIH 288
E K C EC +TF ++ H +H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 49.1 bits (116), Expect = 1e-07
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFK 238
+ + C C + H C +C F P L S +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRF-FSPELKQEHESKCEYKKLT 71
Query: 239 CDHCVKSFNQKPNLISHIKSVH 260
C C+++F ++ H VH
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVH 93
Score = 48.7 bits (115), Expect = 1e-07
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 254 SHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMT 313
S V Y+C C + SH + C CS + H +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHES 63
Query: 314 TVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS 345
+ +K C +C R F ++ H + VH+
Sbjct: 64 K-CEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 46.8 bits (110), Expect = 7e-07
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 281 LSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHT 340
S + Y C +C+ + + SH A C C F + H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHE 62
Query: 341 LSVHSGVRLTCRTCGLFCDSKRALTAHVREAH 372
S +LTC C S ++ H E H
Sbjct: 63 -SKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 36.0 bits (82), Expect = 0.004
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 180 KFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHN 233
C C F + H S ++ C C +TF ++ H HN
Sbjct: 42 AAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 48.0 bits (114), Expect = 2e-07
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 176 PPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIK---------CDFCDKTFAHKPNLIA 226
P C ++F+ L HV H+G + C K+F K L+
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 227 HMNSAHNGVR-FKC 239
H+ H G +
Sbjct: 81 HIRV-HTGEKSGPS 93
Score = 46.9 bits (111), Expect = 5e-07
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFK---------CDHCVKSFNQKPNLISHIKSVH 260
CD+TF+ L+ H+ H G + C KSF K L++HI+ VH
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VH 85
Query: 261 EGIK-YKC 267
G K
Sbjct: 86 TGEKSGPS 93
Score = 46.1 bits (109), Expect = 1e-06
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYK---------CEECTKTFAQKQNLLSHVQAI 287
C ++F+ L++H+ H G + C K+F K L++H++ +
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-V 84
Query: 288 HMGIK-YTC 295
H G K
Sbjct: 85 HTGEKSGPS 93
Score = 42.3 bits (99), Expect = 2e-05
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK----YTCE-----VCSKSYNQVTNLLSHMTTV 315
+ C +TF+ L++HV H+G + C KS+ L++H+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV- 84
Query: 316 HQAQK-YKCA 324
H +K +
Sbjct: 85 HTGEKSGPSS 94
Score = 34.2 bits (78), Expect = 0.016
Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 9/58 (15%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSGVRLT---------CRTCGLFCDSKRALTAHVR 369
C R F+ H L TH H G C G +K L H+R
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 46.1 bits (110), Expect = 5e-07
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 249 KPNLISHIKS-VHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYN 303
+P+ ++++ + V ++ Y C E C + F++ L H++ IH G K + C +C ++++
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFS 60
Query: 304 QVTNLLSHMTT 314
+ +L +H+ T
Sbjct: 61 RSDHLTTHIRT 71
Score = 39.2 bits (92), Expect = 1e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 237 FKCDH--CVKSFNQKPNLISHIKSVHEGIK-YKCEECTKTFAQKQNLLSHV 284
+ C C + F++ L HI+ H G K ++C C + F++ +L +H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 210 KCD--FCDKTFAHKPNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIK 257
C CD+ F+ L H+ H G + F+C C+++F++ +L +HI+
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 36.1 bits (84), Expect = 0.002
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 179 KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHM 228
+ + C C + F+ LT H+ IH G + +C C + F+ +L H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 29.2 bits (66), Expect = 0.56
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHV 200
K F C C ++F+ +LT H+
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHI 69
Score = 27.3 bits (61), Expect = 2.3
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 307 NLLSHMTTVHQAQK-YKCA--DCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCG-LFCDSK 361
NLL+++ + Y C C R F++ L H + +H+G + CR C F S
Sbjct: 8 NLLNYVVP---KMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSD 63
Query: 362 RALTAHVR 369
LT H+R
Sbjct: 64 H-LTTHIR 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 7e-07
Identities = 42/250 (16%), Positives = 77/250 (30%), Gaps = 72/250 (28%)
Query: 93 EYLEIHFCFVYTWVKTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFN 152
E L I++ F+ + +KTE Q + + D L V +Y V+
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVS----------- 132
Query: 153 RSQFEKTFQN--YSMTTTG----HRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
R Q + + G G GK+ + + L
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLID-GVLG----------SGKT-WV-------ALDVCLS 173
Query: 207 VRIKCDFCDKTF------AHKPN-LIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSV 259
+++C K F + P ++ + ++ + + S+IK
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHSSNIKLR 226
Query: 260 HEGIKYKCEECTKTFAQKQN---LL--------SHVQAIHMGIKYTCE--VCSKSYNQVT 306
I+ E + K LL A + C+ + ++ + QVT
Sbjct: 227 IHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNA--FNLS--CKILLTTR-FKQVT 278
Query: 307 NLLSHMTTVH 316
+ LS TT H
Sbjct: 279 DFLSAATTTH 288
Score = 46.4 bits (109), Expect = 2e-05
Identities = 52/364 (14%), Positives = 110/364 (30%), Gaps = 97/364 (26%)
Query: 36 TGQVKSEYNYYQLSSDEKFEIL-KSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEY 94
T + +++ L+ DE +L K + LP + P L AE
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTN----PRRLSIIAES 336
Query: 95 LEIHFCFVYTWVKTEPNQTNH---------PPSETEDSDDPLGESMVVEPEYTPVT---- 141
+ W ++ P+E + + + V P +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK----MFDRLSVFPPSAHIPTILL 392
Query: 142 QIGGTAGLEFNRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVN 201
+ ++ + YS+ V+K P + T +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSL------------VEKQPKE-----------STISIP 429
Query: 202 SIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLI-SHIKSVH 260
SI+L +++K + ++ H+ +++ H N F D + SHI H
Sbjct: 430 SIYLELKVKLE--NEYALHR-SIVDHYNIPKT---FDSDDLIP--PYLDQYFYSHI-GHH 480
Query: 261 EGIKYKCEECTKTFAQKQNLLSHV----QAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVH 316
E ++ L V + + I++ + S + N L
Sbjct: 481 ---LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-GSILNTL------Q 525
Query: 317 QAQKYK---CADCGRL---------F---AQEHTLRT-HTLSVHSGVRLTCRTCGLFCDS 360
Q + YK C + + F +E+ + + +T + L +F ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA--LMAEDEAIFEEA 583
Query: 361 KRAL 364
+ +
Sbjct: 584 HKQV 587
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.9 bits (103), Expect = 2e-06
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG 346
KY CE C + + L H+ T + Y C C F + L H + +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAH 54
Score = 43.9 bits (103), Expect = 2e-06
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 264 KYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
KY CEEC + L H++ H ++ Y C C+ S+ NL HM +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 42.0 bits (98), Expect = 1e-05
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK 292
++ C+ C + L HI++ + Y C C +F K NL H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAHSK 56
Score = 39.3 bits (91), Expect = 1e-04
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 180 KFPCDQCGKSFTLKQNLTYHVNSIHLGVR-IKCDFCDKTFAHKPNLIAHMNS 230
K+ C++CG L H+ + H VR C +C+ +F K NL HM S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 37.4 bits (86), Expect = 4e-04
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 208 RIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKS 258
+ C+ C L H+ + + + C +C SF K NL H+KS
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.0 bits (72), Expect = 0.038
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 320 KYKCADCGRLFAQEHTLRTHTLSVHSGVR-LTCRTCGLFCDSKRALTAHVR 369
KY C +CG + L+ H + H+ VR C C +K LT H++
Sbjct: 1 KYICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 26.2 bits (57), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNS 202
+ + C C SF K NLT H+ S
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKS 51
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S S G K YKCEEC K F +++L +H +H G K
Sbjct: 2 SS-GSSGTGEKPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F + +L +H VH G K
Sbjct: 13 YKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.054
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y CE C K + +L +H H +K
Sbjct: 2 SS-GSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK F +++L H + +H G
Sbjct: 11 KPYKCEECGKGFICRRDLYTH-HMVHTG 37
Score = 27.5 bits (62), Expect = 0.88
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG+ F L TH
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 25.2 bits (56), Expect = 6.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K F + +L H
Sbjct: 14 KCEECGKGFICRRDLYTH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S K YKCE+C K + ++ NL H Q +HMG K
Sbjct: 2 SS-GSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGP 43
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC+ C K +N++ NL H + VH G K
Sbjct: 13 YKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + K Y CE C K YN+ NL H VH +K
Sbjct: 2 SS-GSSGSVEKPYKCEDCGKGYNRRLNLDMHQ-RVHMGEKTSGP 43
Score = 30.9 bits (71), Expect = 0.069
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C+ CGK + + NL H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMH 31
Score = 27.5 bits (62), Expect = 1.2
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC DCG+ + + L R H
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 25.5 bits (57), Expect = 4.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K + + NL H
Sbjct: 14 KCEDCGKGYNRRLNLDMH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 6e-06
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKCE+C K + K NL H Q +H G +
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43
Score = 36.7 bits (86), Expect = 6e-04
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC+ C K +N K NL H + VH G +
Sbjct: 13 YKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y CE C K YN NL H VH ++
Sbjct: 4 GSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGP 43
Score = 30.6 bits (70), Expect = 0.070
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK + K NL H +H G
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMH-QKVHTG 37
Score = 27.9 bits (63), Expect = 0.76
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC CG+ + + L + HT
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 26.7 bits (60), Expect = 1.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K + K NL H
Sbjct: 14 KCEKCGKGYNSKFNLDMH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 7e-06
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S G+ YKC +C K+F+ K LL H Q +H K
Sbjct: 2 SS-GSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ GV +KC C KSF+ K L+ H + +H K
Sbjct: 5 SSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGP 43
Score = 30.6 bits (70), Expect = 0.083
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ C QC KSF+ K L H
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVH 31
Score = 29.0 bits (66), Expect = 0.33
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTLRTH 339
S ++ YKC+ C + F+ + L H
Sbjct: 2 SSGSS-GAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 28.7 bits (65), Expect = 0.39
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G+ Y C C KS++ LL H +H +K
Sbjct: 2 SS-GSSGAGVNPYKCSQCEKSFSGKLRLLVHQ-RMHTREKPSGP 43
Score = 28.7 bits (65), Expect = 0.45
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC C+K+F+ K L+ H
Sbjct: 14 KCSQCEKSFSGKLRLLVH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKC+ C K F+Q +L +H Q +H G K
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KCD C K F+Q +L +H + VH G K
Sbjct: 13 YKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ MG K Y C+VC K ++Q ++L +H VH +K
Sbjct: 4 GSSGMGEKCYKCDVCGKEFSQSSHLQTHQ-RVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + CD CGK F+ +L H +H G
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH-QRVHTG 37
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC CG+ F+Q L+TH
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 25.6 bits (57), Expect = 5.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KCD C K F+ +L H
Sbjct: 14 KCDVCGKEFSQSSHLQTH 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 9e-06
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K +KC+ C K+F + L H +H K
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
FKCD C KSF + L H VH K
Sbjct: 13 FKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.020
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCG 327
+ G K + C++C KS+ + L H H A+K G
Sbjct: 4 GSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEKPSGP-SSG 46
Score = 31.3 bits (72), Expect = 0.044
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F CD CGKSF + L H + +H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH-SMVHTA 37
Score = 26.7 bits (60), Expect = 2.1
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K +KC CG+ F L HT
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 26.3 bits (59), Expect = 2.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KCD C K+F + L H
Sbjct: 14 KCDICGKSFCGRSRLNRH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F NL +H Q IH G K
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K+F NL +H + +H G K
Sbjct: 13 YKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++ +NL +H +H +K
Sbjct: 4 GSSGTGEKPYKCNECGKAFRAHSNLTTHQ-VIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F NLT H IH G
Sbjct: 11 KPYKCNECGKAFRAHSNLTTH-QVIHTG 37
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG+ F L TH
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 24.8 bits (55), Expect = 9.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K F NL H
Sbjct: 14 KCNECGKAFRAHSNLTTH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S S G K Y+C EC K F + NL +H Q IH G K
Sbjct: 2 SS-GSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
++C C K+F + NL +H + +H G K
Sbjct: 13 YRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.034
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y C C K++ +NL +H H +K
Sbjct: 2 SS-GSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.056
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+FT + NL H IH G
Sbjct: 11 KPYRCAECGKAFTDRSNLFTH-QKIHTG 37
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 321 YKCADCGRLFAQEHTLRTH 339
Y+CA+CG+ F L TH
Sbjct: 13 YRCAECGKAFTDRSNLFTH 31
Score = 25.5 bits (57), Expect = 4.9
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F + NL H
Sbjct: 14 RCAECGKAFTDRSNLFTH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K +KCEEC K F Q L SH Q +H G K
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
FKC+ C K F Q L SH + VH G K
Sbjct: 13 FKCEECGKRFTQNSQLHSH-QRVHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.040
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + CE C K + Q + L SH VH +K
Sbjct: 4 GSSGSGEKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C++CGK FT L H +H G
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH-QRVHTG 37
Score = 27.5 bits (62), Expect = 1.0
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K +KC +CG+ F Q L +H
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y CEEC K F L H Q IH G K
Sbjct: 4 GSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+ C+ C K+F L H + +H G K
Sbjct: 13 YNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.16
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y CE C K++ + L H +H +K
Sbjct: 4 GSSGTGEKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.29
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F L H IH G
Sbjct: 11 KPYNCEECGKAFIHDSQLQEH-QRIHTG 37
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K Y C +CG+ F + L+ H
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 25.2 bits (56), Expect = 7.3
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C+ C K F H L H
Sbjct: 14 NCEECGKAFIHDSQLQEH 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G + +KC EC K F ++ +L H +H K
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSREKSSGP 43
Score = 32.9 bits (76), Expect = 0.013
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ +G R FKC+ C K F ++ +L H +H K
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSREKSSGP 43
Score = 29.0 bits (66), Expect = 0.31
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ F C++CGK F + +L H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGH 31
Score = 28.3 bits (64), Expect = 0.51
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G + + C C K + + ++L H+ +H +K
Sbjct: 4 GSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43
Score = 27.5 bits (62), Expect = 1.00
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 314 TVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
+ ++ +KC +CG+ F + L H L +HS
Sbjct: 5 SSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSR 37
Score = 24.8 bits (55), Expect = 9.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K F + +L H
Sbjct: 14 KCNECGKGFGRRSHLAGH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
G K +KCEEC K F SH Q H G K
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.007
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
FKC+ C K F SH + H G K
Sbjct: 13 FKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.077
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADCG 327
S + G K + CE C K + + SH + H +K G
Sbjct: 2 SS-GSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGP-SSG 46
Score = 29.1 bits (66), Expect = 0.31
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K F C++CGK F H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSH 31
Score = 27.1 bits (61), Expect = 1.4
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
+KC +CG+ F R+H+
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHS 36
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G+K Y C EC K F+ +L +H Q IH G K
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.005
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+ C+ C K+F+ +L +H + +H G K
Sbjct: 13 YMCNECGKAFSVYSSLTTH-QVIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G+K Y C C K+++ ++L +H +H +K
Sbjct: 4 GSSGTGVKPYMCNECGKAFSVYSSLTTHQ-VIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F++ +LT H IH G
Sbjct: 11 KPYMCNECGKAFSVYSSLTTH-QVIHTG 37
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 321 YKCADCGRLFAQEHTLRTH 339
Y C +CG+ F+ +L TH
Sbjct: 13 YMCNECGKAFSVYSSLTTH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-05
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K Y+C EC K FAQK NL H Q IH G K
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C K+F QK NL H + +H G K
Sbjct: 13 YRCGECGKAFAQKANLTQH-QRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.072
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+F K NLT H IH G
Sbjct: 11 KPYRCGECGKAFAQKANLTQH-QRIHTG 37
Score = 30.6 bits (70), Expect = 0.079
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++ Q NL H +H +K
Sbjct: 4 GSSGTGEKPYRCGECGKAFAQKANLTQHQ-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K Y+C +CG+ FAQ+ L H
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 25.5 bits (57), Expect = 5.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K FA K NL H
Sbjct: 14 RCGECGKAFAQKANLTQH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S G K +KC EC F+Q +L H Q +H+G K
Sbjct: 2 SS-GSSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ G + +KC C F+Q +L H ++VH G K
Sbjct: 5 SSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.056
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + MG K + C C ++Q ++L H VH +K
Sbjct: 2 SS-GSSGMGEKTWKCRECDMCFSQASSLRLHQ-NVHVGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTLRTH 339
S ++ +K +KC +C F+Q +LR H
Sbjct: 2 SSGSS-GMGEKTWKCRECDMCFSQASSLRLH 31
Score = 29.4 bits (67), Expect = 0.24
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +C F+ +L H ++H+G
Sbjct: 11 KTWKCRECDMCFSQASSLRLH-QNVHVG 37
Score = 27.1 bits (61), Expect = 1.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC CD F+ +L H
Sbjct: 14 KCRECDMCFSQASSLRLH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K Y+C EC K F Q +L+ H + H G K
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C K+F Q +LI H + H G K
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 33.7 bits (78), Expect = 0.007
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++ Q T+L+ H H +K
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.5 bits (75), Expect = 0.018
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+F +L H H G
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 29.8 bits (68), Expect = 0.16
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
+K Y+C +CG+ F Q +L H H+G
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTG 38
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
+C C K F +LI H H G +
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S EG K Y+C EC K+F+ L H H K
Sbjct: 2 SS-GSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.014
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ G + ++C C KSF+ L H H K
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.25
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y C C KS++ L H T H +K
Sbjct: 2 SS-GSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.29
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGKSF+ LT H H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQH-WITHTR 37
Score = 27.9 bits (63), Expect = 0.81
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 314 TVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+ + +K Y+C++CG+ F+ + L THT
Sbjct: 5 SSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S G K YKC +C K+F K L H Q H G +
Sbjct: 2 SS-GSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC C KSF K L H + H G +
Sbjct: 13 YKCSDCGKSFTWKSRLRIH-QKCHTGERHSGP 43
Score = 31.0 bits (71), Expect = 0.069
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C CGKSFT K L H H G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIH-QKCHTG 37
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y C C KS+ + L H H ++
Sbjct: 2 SS-GSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGP 43
Score = 29.0 bits (66), Expect = 0.31
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTLRTH 339
S ++ +K YKC+DCG+ F + LR H
Sbjct: 2 SSGSS-GTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC C K+F K L H
Sbjct: 14 KCSDCGKSFTWKSRLRIH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K ++CEEC K F Q +L SH Q +H G K
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
F+C+ C K F Q +L SH + VH G K
Sbjct: 13 FQCEECGKRFTQNSHLHSH-QRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + CE C K + Q ++L SH VH +K
Sbjct: 4 GSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C++CGK FT +L H +H G
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH-QRVHTG 37
Score = 26.4 bits (59), Expect = 2.8
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K ++C +CG+ F Q L +H
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 2e-05
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
G K ++C EC K F K NL+ H Q H G K
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
F+C C K+FN K NLI H + H G K
Sbjct: 13 FECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.062
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K F C +C K+F K NL H
Sbjct: 11 KPFECSECQKAFNTKSNLIVH 31
Score = 30.5 bits (70), Expect = 0.096
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C K++N +NL+ H T H +K
Sbjct: 4 GSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.72
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
++C++C + F + L RTHT
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHT 36
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F K NLI H
Sbjct: 14 ECSECQKAFNTKSNLIVH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y C EC K+F QK +L H + IH G K
Sbjct: 4 GSSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
+ C+ C KSF QK +L H + +H G K
Sbjct: 13 YICNECGKSFIQKSHLNRH-RRIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.11
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C KS+ Q ++L H H +K
Sbjct: 4 GSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGKSF K +L H IH G
Sbjct: 11 KPYICNECGKSFIQKSHLNRH-RRIHTG 37
Score = 26.3 bits (59), Expect = 3.0
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C +CG+ F Q+ L R HT
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHT 36
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F++ L H Q IH G K
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F++ L H + +H G K
Sbjct: 13 YKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K +++ + L H +H +K
Sbjct: 4 GSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.34
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K++ C++CGK F+ L+ H IH G
Sbjct: 11 KRYKCNECGKVFSRNSQLSQH-QKIHTG 37
Score = 25.9 bits (58), Expect = 4.1
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG++F++ L H
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQH 31
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 42.5 bits (99), Expect = 2e-05
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 4/88 (4%)
Query: 223 NLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK----YKCEECTKTFAQKQ 278
+ + + ++C +C H+ S H + Y C EC +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 279 NLLSHVQAIHMGIKYTCEVCSKSYNQVT 306
L H H G + K NQ
Sbjct: 65 ALSEHNLKYHPGEENFKLTMVKRNNQTI 92
Score = 40.5 bits (94), Expect = 1e-04
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 279 NLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVH----QAQKYKCADCGRLFAQEH 334
+ + Q + Y C+ C+ + H+ + H Y C +C L +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 335 TLRTHTLSVHSG 346
L H L H G
Sbjct: 65 ALSEHNLKYHPG 76
Score = 39.4 bits (91), Expect = 2e-04
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR----FKCDHCVKSFNQKPNLISHIKSVHEG 262
+C +C H++S H V + C C + L H H G
Sbjct: 20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Score = 39.4 bits (91), Expect = 3e-04
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 306 TNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT----CRTCGLFCDSK 361
+ + Y+C C + H S H V L C C
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 362 RALTAHVREAHPGCE 376
AL+ H + HPG E
Sbjct: 64 DALSEHNLKYHPGEE 78
Score = 34.4 bits (78), Expect = 0.015
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRI----KCDFCDKTFAHKPNLIAHMNSAHNG 234
+ C C T+HV+S H V + C C+ L H H G
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K + C C K F+ K LL H Q H K
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 229 NSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+S +G + F C C K+F+ K L+ H + H K
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41
Score = 30.6 bits (70), Expect = 0.067
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K F C C K+F+ K L H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVH 29
Score = 27.9 bits (63), Expect = 0.70
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 313 TTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
++ +K + C+ C + F+ + L +TH
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 26.7 bits (60), Expect = 2.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C+K F+ K L+ H
Sbjct: 12 GCSCCEKAFSSKSYLLVH 29
Score = 26.3 bits (59), Expect = 2.9
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C K+++ + LL H T H +K
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGP 41
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKC+ C K+F +L H Q IH G K
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
+KCD C KSF +L H + +H G K
Sbjct: 13 YKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPSS 45
Score = 30.9 bits (71), Expect = 0.067
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + CD C KSF +LT H IH G
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVH-QRIHTG 37
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+VC KS+ ++L H +H +K
Sbjct: 4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KCD C K+F + +L H
Sbjct: 14 KCDVCHKSFRYGSSLTVH 31
Score = 26.3 bits (59), Expect = 2.8
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
YKC C + F +L R HT
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHT 36
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K +KC EC KTF Q +L H Q IH G K
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
FKC+ C K+F Q +L H + +H G K
Sbjct: 13 FKCNECKKTFTQSSSLTVH-QRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.084
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C++C K+FT +LT H IH G
Sbjct: 11 KLFKCNECKKTFTQSSSLTVH-QRIHTG 37
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C K++ Q ++L H +H +K
Sbjct: 4 GSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
+KC +C + F Q +L R HT
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHT 36
Score = 25.9 bits (58), Expect = 3.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C KTF +L H
Sbjct: 14 KCNECKKTFTQSSSLTVH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKC EC K F Q +L +H IH G K
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
+KC+ C K F Q +L +H +H G K
Sbjct: 13 YKCNECGKVFTQNSHLTNH-WRIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + Q ++L +H +H +K
Sbjct: 4 GSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.26
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK FT +LT H IH G
Sbjct: 11 KPYKCNECGKVFTQNSHLTNH-WRIHTG 37
Score = 25.9 bits (58), Expect = 3.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG++F Q L H
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F+Q L H Q IH G K
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K+F+Q L H + +H G K
Sbjct: 13 YKCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.22
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K+++Q + L H +H +K
Sbjct: 4 GSSGTGEKPYKCNECGKAFSQTSKLARHQ-RIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.39
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F+ L H IH G
Sbjct: 11 KPYKCNECGKAFSQTSKLARH-QRIHTG 37
Score = 26.3 bits (59), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
YKC +CG+ F+Q L R HT
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHT 36
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKC EC K + ++ +L H Q +H G K
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC C K + ++ +L H + VH G K
Sbjct: 13 YKCVECGKGYKRRLDLDFH-QRVHTGEKLSGP 43
Score = 29.4 bits (67), Expect = 0.20
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK + + +L +H +H G
Sbjct: 11 KPYKCVECGKGYKRRLDLDFH-QRVHTG 37
Score = 29.4 bits (67), Expect = 0.20
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K Y + +L H H +K
Sbjct: 4 GSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEKLSGP 43
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC +CG+ + + L R HT
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F Q +L+ H + IH G K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.007
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F Q +L+ H + +H G K
Sbjct: 13 YKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.15
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + Q ++L+ H H +K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.44
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK FT +L H IH G
Sbjct: 11 KPYKCNECGKVFTQNSHLVRH-RGIHTG 37
Score = 25.5 bits (57), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
YKC +CG++F Q L HT
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHT 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F Q +L H + IH G K
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F Q +L H + +H G K
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + Q ++L H +H +K
Sbjct: 4 GSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.37
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK FT +L H IH G
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTG 37
Score = 25.5 bits (57), Expect = 6.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 321 YKCADCGRLFAQEHTLRTH 339
YKC +CG++F Q L H
Sbjct: 13 YKCNECGKVFTQNSHLARH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y C+EC K+F LL H Q +H G K
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPS 44
Score = 34.9 bits (81), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
+ C C KSF L+ H + VH G K
Sbjct: 13 YNCKECGKSFRWASCLLKH-QRVHSGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.14
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCAD 325
+ G K Y C+ C KS+ + LL H VH +K +
Sbjct: 4 GSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGPSS 45
Score = 29.1 bits (66), Expect = 0.28
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGKSF L H +H G
Sbjct: 11 KPYNCKECGKSFRWASCLLKH-QRVHSG 37
Score = 26.0 bits (58), Expect = 3.2
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
+K Y C +CG+ F L H VHSG
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSG 37
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y C EC KTF+QK L +H Q H G K
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
+ C+ C K+F+QK L +H + H G K
Sbjct: 13 YGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.28
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C++CGK+F+ K L+ H
Sbjct: 11 KPYGCNECGKTFSQKSILSAH 31
Score = 29.0 bits (66), Expect = 0.31
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K+++Q + L +H T H +K
Sbjct: 4 GSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.2
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C +CG+ F+Q+ L RTHT
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHT 36
Score = 25.6 bits (57), Expect = 5.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C+ C KTF+ K L AH
Sbjct: 14 GCNECGKTFSQKSILSAH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G + C EC K F K NL+ H Q IH G +
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
F C C K F K NLI H K +H G +
Sbjct: 13 FICSECGKVFTHKTNLIIHQK-IHTGERPSGP 43
Score = 30.5 bits (70), Expect = 0.073
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
F C +CGK FT K NL H IH G
Sbjct: 11 NPFICSECGKVFTHKTNLIIH-QKIHTG 37
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G + C C K + TNL+ H H ++
Sbjct: 2 SS-GSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERPSGP 43
Score = 27.8 bits (63), Expect = 0.87
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C K F HK NLI H
Sbjct: 14 ICSECGKVFTHKTNLIIH 31
Score = 27.1 bits (61), Expect = 1.3
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
+ C++CG++F + L + HT
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHT 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y C EC K F + NL+ H Q IH K
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44
Score = 33.3 bits (77), Expect = 0.010
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+ C C K+F + NLI H K +H K
Sbjct: 13 YICAECGKAFTIRSNLIKHQK-IHTKQKPSGPS 44
Score = 30.6 bits (70), Expect = 0.084
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+FT++ NL H IH
Sbjct: 11 KPYICAECGKAFTIRSNLIKH-QKIHTK 37
Score = 30.2 bits (69), Expect = 0.11
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y C C K++ +NL+ H H QK
Sbjct: 2 SS-GSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGP 43
Score = 26.3 bits (59), Expect = 2.5
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y CA+CG+ F L + HT
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHT 36
Score = 24.8 bits (55), Expect = 9.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C K F + NLI H
Sbjct: 14 ICAECGKAFTIRSNLIKH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F Q +L +H Q IH G+K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F Q +L +H + +H G+K
Sbjct: 13 YKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 30.2 bits (69), Expect = 0.13
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + Q ++L +H +H K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGP 43
Score = 29.0 bits (66), Expect = 0.30
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK FT +L H IH G
Sbjct: 11 KPYKCNECGKVFTQNSHLANH-QRIHTG 37
Score = 25.9 bits (58), Expect = 3.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG++F Q L H
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 39.8 bits (94), Expect = 3e-05
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K ++C C K+F K NL++H Q IH G K
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTH-QRIHTGEKSGPS 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
F+C HC KSF K NL++H + +H G K
Sbjct: 13 FECTHCGKSFRAKGNLVTH-QRIHTGEKSGPS 43
Score = 32.1 bits (74), Expect = 0.022
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C CGKSF K NL H IH G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTH-QRIHTG 37
Score = 31.0 bits (71), Expect = 0.054
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C KS+ NL++H H +K
Sbjct: 4 GSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPS 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
QK ++C CG+ F + L R HT
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 26.3 bits (59), Expect = 2.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K+F K NL+ H
Sbjct: 14 ECTHCGKSFRAKGNLVTH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.8 bits (94), Expect = 4e-05
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K Y+C EC K F K NL+ H Q H G +
Sbjct: 4 GSSGTGEKPYECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.008
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C+ C K+FN K NL+ H + H G
Sbjct: 13 YECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.11
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++N +NL+ H T H +
Sbjct: 4 GSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.11
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C++C K+F K NL H
Sbjct: 11 KPYECNECQKAFNTKSNLMVH 31
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C +C + F + L RTHT
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHT 36
Score = 25.5 bits (57), Expect = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C+ C K F K NL+ H
Sbjct: 14 ECNECQKAFNTKSNLMVH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F Q +L H + IH G K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F Q +L H + +H G K
Sbjct: 13 YKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.18
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + Q ++L H H +K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK FT +L H IH G
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RGIHTG 37
Score = 25.5 bits (57), Expect = 4.7
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC +CG++F Q L HT
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K +KC EC K F+++ L H +H G K
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
FKC C K F+++ L H +H G K
Sbjct: 13 FKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C +CGK F+ + L H + +H G
Sbjct: 11 KPFKCVECGKGFSRRSALNVH-HKLHTG 37
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C K +++ + L H H +K
Sbjct: 4 GSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K +KC +CG+ F++ L H
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 24.8 bits (55), Expect = 8.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC C K F+ + L H
Sbjct: 14 KCVECGKGFSRRSALNVH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F + +L H Q IH G K
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.010
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC C K F + +L H + +H G K
Sbjct: 13 YKCHECGKVFRRNSHLARH-QLIHTGEKPSGPS 44
Score = 30.1 bits (69), Expect = 0.12
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + + ++L H +H +K
Sbjct: 4 GSSGTGEKPYKCHECGKVFRRNSHLARHQ-LIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.34
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK F +L H IH G
Sbjct: 11 KPYKCHECGKVFRRNSHLARH-QLIHTG 37
Score = 25.1 bits (56), Expect = 6.7
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG++F + L H
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F + +L H + IH G +
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPS 44
Score = 33.2 bits (77), Expect = 0.008
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC C K+F++ +L H + +H G +
Sbjct: 13 YKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++++ T+L H +H +
Sbjct: 4 GSSGSGEKPYKCSECGKAFHRHTHLNEHR-RIHTGYRPSGP 43
Score = 28.6 bits (65), Expect = 0.43
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+F +L H IH G
Sbjct: 11 KPYKCSECGKAFHRHTHLNEH-RRIHTG 37
Score = 25.1 bits (56), Expect = 7.8
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC++CG+ F + L H
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y+C+ C K F+ +L H Q +H G K
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
++CD C K+F+ +L H + VH G K
Sbjct: 13 YECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + CD C K+F+ +LT H +H G
Sbjct: 11 KPYECDVCRKAFSHHASLTQH-QRVHSG 37
Score = 28.2 bits (64), Expect = 0.52
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+VC K+++ +L H H +K
Sbjct: 4 GSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKPSGP 43
Score = 25.9 bits (58), Expect = 4.2
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C C + F+ +L R H+
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHS 36
Score = 25.5 bits (57), Expect = 4.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+CD C K F+H +L H
Sbjct: 14 ECDVCRKAFSHHASLTQH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y+C EC K F+Q L H Q +H G K
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.009
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
++C+ C K+F+Q L H + VH G K
Sbjct: 13 YQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.15
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K+++Q + L H VH +K
Sbjct: 4 GSSGTGGKPYQCNECGKAFSQTSKLARHQ-RVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.38
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F+ L H +H G
Sbjct: 11 KPYQCNECGKAFSQTSKLARH-QRVHTG 37
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C +CG+ F+Q L R HT
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHT 36
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K +KC EC K++ Q+ +L H Q +H G K
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
FKC C KS+NQ+ +L H + VH G K
Sbjct: 13 FKCGECGKSYNQRVHLTQH-QRVHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.060
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C KSYNQ +L H VH +K
Sbjct: 4 GSSGTGEKPFKCGECGKSYNQRVHLTQHQ-RVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C +CGKS+ + +LT H +H G
Sbjct: 11 KPFKCGECGKSYNQRVHLTQH-QRVHTG 37
Score = 25.9 bits (58), Expect = 3.2
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
+KC +CG+ + Q L R HT
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHT 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F L H Q IH G K
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
+KC+ C K F L H + +H G K
Sbjct: 13 YKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.25
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK F L+ H IH G
Sbjct: 11 KPYKCNECGKVFRHNSYLSRH-QRIHTG 37
Score = 29.0 bits (66), Expect = 0.28
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + + L H +H +K
Sbjct: 4 GSSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 3.1
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K YKC +CG++F L H
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 25.2 bits (56), Expect = 6.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K F H L H
Sbjct: 14 KCNECGKVFRHNSYLSRH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-05
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G + +KC EC K+F Q +L+ H Q IH G K
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.008
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
KC+ C KSF Q +LI H + +H G K
Sbjct: 13 HKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.10
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G + + C C KS+ Q +L+ H +H +K
Sbjct: 4 GSSGTGERPHKCNECGKSFIQSAHLIQHQ-RIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.25
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ C++CGKSF +L H IH G
Sbjct: 11 RPHKCNECGKSFIQSAHLIQH-QRIHTG 37
Score = 25.5 bits (57), Expect = 4.9
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
+KC +CG+ F Q L R HT
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHT 36
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.9 bits (94), Expect = 4e-05
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S S G K YKC EC K F + H Q +H G +
Sbjct: 2 SS-GSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
Score = 32.2 bits (74), Expect = 0.022
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC C K+F + H + +H G +
Sbjct: 13 YKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
Score = 29.5 bits (67), Expect = 0.20
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y C C K++ ++ H +H Q+
Sbjct: 2 SS-GSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGP 43
Score = 27.9 bits (63), Expect = 0.62
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+F + T H +H G
Sbjct: 11 KPYKCMECGKAFGDNSSCTQH-QRLHTG 37
Score = 26.4 bits (59), Expect = 2.2
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC +CG+ F + R HT
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQRLHT 36
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-05
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S G + Y C EC K F + +L+ H H K
Sbjct: 2 SS-GSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFREKSSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ +G R + C+ C K+F + +LI H+K H K
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 31.3 bits (72), Expect = 0.046
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCA 324
S + G + Y C C K++ + ++L+ H+ H +K +
Sbjct: 2 SS-GSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGPS 44
Score = 28.6 bits (65), Expect = 0.38
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ + C++CGK+F +L H+ H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLK-RHFR 37
Score = 25.9 bits (58), Expect = 3.7
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
S ++ ++ Y C +CG+ F + L + H
Sbjct: 2 SSGSS-GSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 25.2 bits (56), Expect = 7.7
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 202 SIHLGVR-IKCDFCDKTFAHKPNLIAHMNSAHNGVR-FKC 239
S G R C+ C K F +LI H+ H +
Sbjct: 5 SSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K YKC EC K F Q +L H + +H G K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44
Score = 33.3 bits (77), Expect = 0.009
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+KC+ C K F Q +L H + VH G K
Sbjct: 13 YKCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44
Score = 28.6 bits (65), Expect = 0.35
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K + Q ++L H H K
Sbjct: 4 GSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGP 43
Score = 28.3 bits (64), Expect = 0.53
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK FT +L H +H G
Sbjct: 11 KPYKCNECGKVFTQNSHLARH-RRVHTG 37
Score = 25.9 bits (58), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC +CG++F Q L R HT
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 39.8 bits (94), Expect = 5e-05
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G+K Y C +C KTF+ K L+ H Q H G+K
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGP 43
Score = 32.1 bits (74), Expect = 0.024
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+ C C K+F+ K LI H + H G+K
Sbjct: 13 YGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGP 43
Score = 31.0 bits (71), Expect = 0.057
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C QC K+F+LK L H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVH 31
Score = 28.7 bits (65), Expect = 0.39
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G+K Y C C+K+++ + L+ H + H K
Sbjct: 4 GSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGP 43
Score = 27.5 bits (62), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C+ C + F+ + L R+HT
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHT 36
Score = 26.3 bits (59), Expect = 3.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C KTF+ K LI H
Sbjct: 14 GCSQCAKTFSLKSQLIVH 31
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-05
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 258 SVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K ++C EC K F +K L H Q IH G K
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
F+C C K+F +K L H + +H G K
Sbjct: 13 FECTECGKAFTRKSTLSMH-QKIHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.058
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C +CGK+FT K L+ H IH G
Sbjct: 11 KHFECTECGKAFTRKSTLSMH-QKIHTG 37
Score = 28.6 bits (65), Expect = 0.41
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C K++ + + L H H +K
Sbjct: 4 GSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.2
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
++C +CG+ F ++ TL + HT
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHT 36
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-05
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K +KC+EC K F Q +L SH IH G K
Sbjct: 4 GSSGSGEKPFKCKECGKAFRQNIHLASH-LRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
FKC C K+F Q +L SH +H G K
Sbjct: 13 FKCKECGKAFRQNIHLASH-LRIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.089
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C+ C K++ Q +L SH+ +H +K
Sbjct: 4 GSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C +CGK+F +L H IH G
Sbjct: 11 KPFKCKECGKAFRQNIHLASH-LRIHTG 37
Score = 25.5 bits (57), Expect = 5.1
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTLRTH 339
+K +KC +CG+ F Q L +H
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G + ++C +C K F Q N + H + IH G K
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.015
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 232 HNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+G R +C C K F Q N I H + +H G K
Sbjct: 7 GHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ C CGK F N H IH G
Sbjct: 11 RGHRCSDCGKFFLQASNFIQH-RRIHTG 37
Score = 29.0 bits (66), Expect = 0.30
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSH 311
+ G + + C C K + Q +N + H
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 27.1 bits (61), Expect = 1.5
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
++C+DCG+ F Q R HT
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHT 36
Score = 25.6 bits (57), Expect = 4.8
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F N I H
Sbjct: 14 RCSDCGKFFLQASNFIQH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 5e-05
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G + Y C C K F + NL+ H Q IH G K
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKH-QKIHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.011
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+ C C K+F + NLI H K +H G K
Sbjct: 13 YICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.043
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G + Y C VC K++ +NL+ H H +K
Sbjct: 4 GSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.11
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ + C CGK+FT + NL H IH G
Sbjct: 11 RPYICTVCGKAFTDRSNLIKH-QKIHTG 37
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C CG+ F L + HT
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHT 36
Score = 25.5 bits (57), Expect = 5.0
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C K F + NLI H
Sbjct: 14 ICTVCGKAFTDRSNLIKH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G + Y+C EC K F QK L H Q IH G K
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMH-QRIHRGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.021
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C K+F QK L H + +H G K
Sbjct: 13 YECSECGKAFIQKSTLSMH-QRIHRGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.15
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ + C +CGK+F K L+ H IH G
Sbjct: 11 RHYECSECGKAFIQKSTLSMH-QRIHRG 37
Score = 28.3 bits (64), Expect = 0.51
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G + Y C C K++ Q + L H H+ +K
Sbjct: 4 GSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C++CG+ F Q+ TL R H
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHR 36
Score = 24.8 bits (55), Expect = 10.0
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F K L H
Sbjct: 14 ECSECGKAFIQKSTLSMH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S S G K Y C+EC K+F++ LL H + +H G K
Sbjct: 2 SS-GSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+ C C KSF++ P L+ H + +H G K
Sbjct: 13 YNCKECGKSFSRAPCLLKH-ERLHSGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.14
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
S + G K Y C+ C KS+++ LL H H +K
Sbjct: 2 SS-GSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.34
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGKSF+ L H +H G
Sbjct: 11 KLYNCKECGKSFSRAPCLLKH-ERLHSG 37
Score = 26.0 bits (58), Expect = 3.7
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C +CG+ F++ L R H+
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHS 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 39.4 bits (93), Expect = 5e-05
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G Y+C EC K F +K L+SH Q H G +
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 32.9 bits (76), Expect = 0.012
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S +G ++C C K+FN+K LISH + H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQR-THAGESGPSS 41
Score = 28.6 bits (65), Expect = 0.33
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ C +CGK+F K L H
Sbjct: 9 NPYECSECGKAFNRKDQLISH 29
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G Y C C K++N+ L+SH T H +
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGESGPSS 41
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C++CG+ F ++ L RTH
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHA 34
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKC EC K F + +L H QA H G K
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC+ C K+F + +L H ++ H G K
Sbjct: 13 YKCNECGKAFRARSSLAIH-QATHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.12
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+F + +L H + H G
Sbjct: 11 KPYKCNECGKAFRARSSLAIH-QATHSG 37
Score = 29.0 bits (66), Expect = 0.31
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++ ++L H T H +K
Sbjct: 4 GSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.93
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
YKC +CG+ F +L TH+
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHS 36
Score = 25.6 bits (57), Expect = 5.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC+ C K F + +L H
Sbjct: 14 KCNECGKAFRARSSLAIH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K Y+C +C K+F +K L H Q IH G
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVH-QRIHTGENPSGP 43
Score = 31.7 bits (73), Expect = 0.029
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C KSF +K L H + +H G
Sbjct: 13 YECSDCGKSFIKKSQLHVH-QRIHTGENPSGP 43
Score = 30.6 bits (70), Expect = 0.074
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C CGKSF K L H IH G
Sbjct: 11 KPYECSDCGKSFIKKSQLHVH-QRIHTG 37
Score = 27.9 bits (63), Expect = 0.76
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C KS+ + + L H H +
Sbjct: 4 GSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C+DCG+ F ++ L R HT
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHT 36
Score = 25.6 bits (57), Expect = 4.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K+F K L H
Sbjct: 14 ECSDCGKSFIKKSQLHVH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
G K Y+C C K F+ +Q+L H Q IH G K
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
Score = 31.3 bits (72), Expect = 0.045
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
++C C K+F+ + +L H + +H G K
Sbjct: 13 YECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C CGK+F+ +Q+L+ H IH G
Sbjct: 11 KPYECSVCGKAFSHRQSLSVH-QRIHSG 37
Score = 28.2 bits (64), Expect = 0.64
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C VC K+++ +L H H +K
Sbjct: 4 GSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGP 43
Score = 26.7 bits (60), Expect = 2.0
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C+ CG+ F+ +L R H+
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHS 36
Score = 26.3 bits (59), Expect = 2.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F+H+ +L H
Sbjct: 14 ECSVCGKAFSHRQSLSVH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y+C+ C+K F QK +L H Q H G K
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 232 HNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
G + ++C C K+F QK +L H + H G K
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C C K+FT K +L H H G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQH-QKTHTG 37
Score = 29.8 bits (68), Expect = 0.16
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+VCSK++ Q +L H T H +K
Sbjct: 4 GSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C C + F Q+ L +THT
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHT 36
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y+C+EC KTF Q +L H + +H G +
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSGPS 44
Score = 34.1 bits (79), Expect = 0.005
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
S+ +G + ++C C K+F Q +L H K VH G +
Sbjct: 5 SSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSGPSS 45
Score = 29.0 bits (66), Expect = 0.30
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +C K+F +L H +H G
Sbjct: 11 KPYECKECRKTFIQIGHLNQH-KRVHTG 37
Score = 27.5 bits (62), Expect = 0.94
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+ C K++ Q+ +L H H ++
Sbjct: 4 GSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERSSGP 43
Score = 26.0 bits (58), Expect = 3.2
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
S ++ +K Y+C +C + F Q L R HT
Sbjct: 2 SSGSS-GSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 6e-05
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K YKC +C K F +K L H Q H G +
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43
Score = 33.3 bits (77), Expect = 0.010
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC C K+F +K L H + H G +
Sbjct: 13 YKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43
Score = 30.9 bits (71), Expect = 0.058
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C CGK+FT K L H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIH 31
Score = 28.2 bits (64), Expect = 0.63
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
YKC+DCG+ F ++ L ++HT
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 28.2 bits (64), Expect = 0.64
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++ + + L H + H ++
Sbjct: 4 GSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGP 43
Score = 26.3 bits (59), Expect = 3.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC C K F K L H
Sbjct: 14 KCSDCGKAFTRKSGLHIH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 7e-05
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K KC EC K F K L+ H Q H+ K
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGP 43
Score = 32.5 bits (75), Expect = 0.018
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
KC C K+F K LI H + H K
Sbjct: 13 CKCTECGKAFCWKSQLIMH-QRTHVDDKHSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K C +CGK+F K L H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH 31
Score = 27.9 bits (63), Expect = 0.69
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
S ++ +K KC +CG+ F + L RTH
Sbjct: 2 SSGSS-GTGEKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 26.8 bits (60), Expect = 2.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K C C K++ + L+ H T H K
Sbjct: 4 GSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGP 43
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC C K F K LI H
Sbjct: 14 KCTECGKAFCWKSQLIMH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.0 bits (92), Expect = 7e-05
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G Y+C EC K F++K L+SH Q H G +
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSH-QKTHSGQSGPSS 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ G ++C C K F++K L+SH K H G
Sbjct: 5 SSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSS 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ C +CGK F+ K L H
Sbjct: 11 NPYECCECGKVFSRKDQLVSH 31
Score = 27.1 bits (61), Expect = 1.2
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
S ++ + Y+C +CG++F+++ L +TH+
Sbjct: 2 SSGSS-GTGENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 24.8 bits (55), Expect = 8.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSH 311
+ G Y C C K +++ L+SH
Sbjct: 4 GSSGTGENPYECCECGKVFSRKDQLVSH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 7e-05
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y+C +C K F+ + +L +H QAIH G K
Sbjct: 4 GSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
Score = 31.3 bits (72), Expect = 0.041
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
++C+ C K+F+ + +L +H +++H G K
Sbjct: 13 YECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
Score = 31.0 bits (71), Expect = 0.069
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C+QCGK+F+++ +LT H +IH G
Sbjct: 11 KPYECNQCGKAFSVRSSLTTH-QAIHTG 37
Score = 27.9 bits (63), Expect = 0.83
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K+++ ++L +H H +K
Sbjct: 4 GSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGP 43
Score = 25.6 bits (57), Expect = 5.3
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C CG+ F+ +L HT
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHT 36
Score = 24.8 bits (55), Expect = 9.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C+ C K F+ + +L H
Sbjct: 14 ECNQCGKAFSVRSSLTTH 31
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
G K ++C EC K+F+ L +H Q IH G K
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.036
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
F+C C KSF+ L +H + +H G K
Sbjct: 13 FECAECGKSFSISSQLATH-QRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.11
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C +CGKSF++ L H IH G
Sbjct: 11 KPFECAECGKSFSISSQLATH-QRIHTG 37
Score = 27.9 bits (63), Expect = 0.89
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C KS++ + L +H H +K
Sbjct: 4 GSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 321 YKCADCGRLFAQEHTLRTH 339
++CA+CG+ F+ L TH
Sbjct: 13 FECAECGKSFSISSQLATH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 7e-05
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
S K ++C EC + F K +L H Q IH G K
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTGEK 39
Score = 31.4 bits (72), Expect = 0.045
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K C +CG+ FTLK +L H IH G
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH-QRIHTG 37
Score = 29.1 bits (66), Expect = 0.28
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISH 255
S+ + + +C C + F K +L H
Sbjct: 5 SSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 27.5 bits (62), Expect = 1.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
S ++ + K ++C +CGR F + L R HT
Sbjct: 2 SSGSS-GSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 27.1 bits (61), Expect = 1.6
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSH 311
+ K + C C + + ++L H
Sbjct: 4 GSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 8e-05
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y C EC K F+ K L+ H H G K
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.025
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+ C C K+F+ K LI H++ H G K
Sbjct: 13 YGCSECGKAFSSKSYLIIHMR-THSGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.20
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C +CGK+F+ K L H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIH 31
Score = 29.1 bits (66), Expect = 0.25
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K+++ + L+ HM T H +K
Sbjct: 4 GSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C++CG+ F+ + L RTH+
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHS 36
Score = 25.6 bits (57), Expect = 5.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C K F+ K LI H
Sbjct: 14 GCSECGKAFSSKSYLIIH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 8e-05
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
S S G K + C+EC K F L H Q +HMG K
Sbjct: 2 SS-GSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEK 39
Score = 30.6 bits (70), Expect = 0.087
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K CD+CGK+F L H +H+G
Sbjct: 11 KSHTCDECGKNFCYISALRIH-QRVHMG 37
Score = 29.5 bits (67), Expect = 0.22
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCG 355
S ++ +K + C +CG+ F LR H VH G + + + G
Sbjct: 2 SSGSS-GSGEKSHTCDECGKNFCYISALRIHQ-RVHMGEKCSGPSSG 46
Score = 29.1 bits (66), Expect = 0.25
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSH 311
S + G K +TC+ C K++ ++ L H
Sbjct: 2 SS-GSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 29.1 bits (66), Expect = 0.25
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
CD C K+F L H + VH G K
Sbjct: 13 HTCDECGKNFCYISALRIH-QRVHMGEK 39
Score = 26.4 bits (59), Expect = 2.7
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
CD C K F + L H
Sbjct: 14 TCDECGKNFCYISALRIH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 8e-05
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K Y C+ C K F L+ H Q IH G K
Sbjct: 4 GSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.017
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+ CD+C K+F L+ H + +H G K
Sbjct: 13 YVCDYCGKAFGLSAELVRH-QRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+ C K++ L+ H H +K
Sbjct: 4 GSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.23
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + CD CGK+F L L H IH G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRH-QRIHTG 37
Score = 25.6 bits (57), Expect = 4.4
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C CG+ F L R HT
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHT 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 8e-05
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G Y+C EC K F++K L+SH Q H G K
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.012
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C K+F++K LISH + H G K
Sbjct: 13 YECHECGKAFSRKYQLISH-QRTHAGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G Y C C K++++ L+SH T H +K
Sbjct: 4 GSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.26
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ C +CGK+F+ K L H
Sbjct: 11 NPYECHECGKAFSRKYQLISH 31
Score = 27.1 bits (61), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C +CG+ F++++ L RTH
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHA 36
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F+ K LI+H
Sbjct: 14 ECHECGKAFSRKYQLISH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K YKC+ C K F +L+ H ++H G +
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+KC C K+F +L+ H SVH G +
Sbjct: 13 YKCQVCGKAFRVSSHLVQH-HSVHSGERPSGP 43
Score = 30.9 bits (71), Expect = 0.065
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+VC K++ ++L+ H +VH ++
Sbjct: 4 GSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43
Score = 29.0 bits (66), Expect = 0.29
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C CGK+F + +L H +S+H G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH-HSVHSG 37
Score = 25.2 bits (56), Expect = 6.2
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K YKC CG+ F L H+
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 9e-05
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G + Y+C EC K FA+K L+ H Q IH G K
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMH-QRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.035
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C K+F +K LI H + +H G K
Sbjct: 13 YECSECGKAFARKSTLIMH-QRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ + C +CGK+F K L H IH G
Sbjct: 11 RHYECSECGKAFARKSTLIMH-QRIHTG 37
Score = 27.8 bits (63), Expect = 0.71
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G + Y C C K++ + + L+ H H +K
Sbjct: 4 GSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.9
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C++CG+ FA++ TL R HT
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHT 36
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K + C +C K F+ L H + IH G K
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
F C C K+F+ L H + +H G K
Sbjct: 13 FDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.12
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K F C CGK+F+ L H IH G
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQH-RRIHTG 37
Score = 29.0 bits (66), Expect = 0.31
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C K+++ L H H +K
Sbjct: 4 GSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKPSGP 43
Score = 26.7 bits (60), Expect = 2.1
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K + C DCG+ F+ L R HT
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K Y+C+EC K F+Q +L+ H Q +H G K
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQH-QRVHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.019
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C K+F+Q +LI H + VH G K
Sbjct: 13 YECKECGKAFSQTTHLIQH-QRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.22
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C+ C K+++Q T+L+ H VH +K
Sbjct: 4 GSSGTGEKPYECKECGKAFSQTTHLIQHQ-RVHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.35
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C +CGK+F+ +L H +H G
Sbjct: 11 KPYECKECGKAFSQTTHLIQH-QRVHTG 37
Score = 25.2 bits (56), Expect = 6.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K Y+C +CG+ F+Q L R HT
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQRVHT 36
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S G K Y C C K F +L H +H
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44
Score = 32.9 bits (76), Expect = 0.014
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCE 268
+ C+ C K+F +L H VH
Sbjct: 13 YSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44
Score = 31.3 bits (72), Expect = 0.043
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y+C VC K++ +L H+ VH +
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHL-RVHTQETLSGP 43
Score = 30.2 bits (69), Expect = 0.13
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C+ CGK+F L +L H +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH-LRVHTQ 37
Score = 24.8 bits (55), Expect = 8.4
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C CG+ F L R HT
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHT 36
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K ++C EC K+F+ L+ H Q IH G
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVH-QRIHTGENPSGP 43
Score = 30.6 bits (70), Expect = 0.076
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+C C KSF+ LI H + +H G
Sbjct: 13 HECRECGKSFSFNSQLIVH-QRIHTGENPSGP 43
Score = 28.7 bits (65), Expect = 0.45
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K C +CGKSF+ L H IH G
Sbjct: 11 KPHECRECGKSFSFNSQLIVH-QRIHTG 37
Score = 27.9 bits (63), Expect = 0.75
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K + C C KS++ + L+ H +H +
Sbjct: 4 GSSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
++C +CG+ F+ L R HT
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHT 36
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G K Y+C EC K F K L+ H + H G+ +
Sbjct: 4 GSSGSGEKPYECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 29.8 bits (68), Expect = 0.16
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C++CGK+F K L H
Sbjct: 11 KPYECNECGKAFIWKSLLIVH 31
Score = 29.0 bits (66), Expect = 0.31
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C+ C K+F K LI H + H G+
Sbjct: 13 YECNECGKAFIWKSLLIVH-ERTHAGVSGPSS 43
Score = 27.1 bits (61), Expect = 1.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C +CG+ F + L RTH
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHA 36
Score = 26.3 bits (59), Expect = 2.6
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C C K++ + L+ H T H
Sbjct: 4 GSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
G K Y+C C K+F +K L H Q IH G K
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.032
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
++C C KSF +K L H + +H G K
Sbjct: 13 YECSICGKSFTKKSQLHVH-QQIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.070
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C CGKSFT K L H IH G
Sbjct: 11 KPYECSICGKSFTKKSQLHVH-QQIHTG 37
Score = 28.3 bits (64), Expect = 0.56
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G K Y C +C KS+ + + L H H +K
Sbjct: 4 GSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y+C+ CG+ F ++ L + HT
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHT 36
Score = 25.2 bits (56), Expect = 6.9
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K+F K L H
Sbjct: 14 ECSICGKSFTKKSQLHVH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G + Y+C EC K F K +L+ H + H G K
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.004
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEE 269
++C C K+F K +LI H + H G K
Sbjct: 13 YECIECGKAFKTKSSLICH-RRSHTGEKPSGPSS 45
Score = 29.0 bits (66), Expect = 0.28
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G + Y C C K++ ++L+ H + H +K
Sbjct: 4 GSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.33
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ + C +CGK+F K +L H
Sbjct: 11 RPYECIECGKAFKTKSSLICH 31
Score = 27.1 bits (61), Expect = 1.5
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
Q+ Y+C +CG+ F + +L R+HT
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRRSHT 36
Score = 25.2 bits (56), Expect = 7.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K F K +LI H
Sbjct: 14 ECIECGKAFKTKSSLICH 31
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 259 VHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
G K Y+C++C K F+QK +L+ H +H G
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVH-IRVHTGSG 38
Score = 31.8 bits (73), Expect = 0.032
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + CDQCGK+F+ K +L H +H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH-IRVHTG 36
Score = 31.4 bits (72), Expect = 0.036
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
++CD C K+F+QK +LI HI+ VH G
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIR-VHTGSG 38
Score = 27.9 bits (63), Expect = 0.67
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
G K Y C+ C K+++Q +L+ H+
Sbjct: 3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 27.1 bits (61), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 315 VHQAQK-YKCADCGRLFAQEHTL----RTHT 340
+K Y+C CG+ F+Q+ +L R HT
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 25.6 bits (57), Expect = 4.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 210 KCDFCDKTFAHKPNLIAHM 228
+CD C K F+ K +LI H+
Sbjct: 13 RCDQCGKAFSQKGSLIVHI 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YTC 295
S G+K Y C EC K F K L+ H H G +
Sbjct: 4 GSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.087
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
+ C+ C K+F K LI H H G
Sbjct: 13 YVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 29.4 bits (67), Expect = 0.18
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C++CGK+F K L H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIH 31
Score = 27.8 bits (63), Expect = 0.72
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKC 323
+ G+K Y C C K++ + L+ H T H +
Sbjct: 4 GSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSS 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 321 YKCADCGRLFAQEHTL----RTHT 340
Y C +CG+ F + L RTHT
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHT 36
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 37.2 bits (87), Expect = 4e-04
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
S G + Y+C+EC K+F QK +L H + IH G
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLH-ERIHTGSG 37
Score = 31.4 bits (72), Expect = 0.035
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ + C +CGKSF K +LT H IH G
Sbjct: 9 RVYECQECGKSFRQKGSLTLH-ERIHTG 35
Score = 29.5 bits (67), Expect = 0.16
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISH 255
S +G R ++C C KSF QK +L H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 26.4 bits (59), Expect = 2.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 321 YKCADCGRLFAQEHTLRTH 339
Y+C +CG+ F Q+ +L H
Sbjct: 11 YECQECGKSFRQKGSLTLH 29
Score = 24.5 bits (54), Expect = 10.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
+C C K+F K +L H
Sbjct: 12 ECQECGKSFRQKGSLTLH 29
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.5 bits (85), Expect = 5e-04
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
S G K Y C EC +TF+ L+ H Q +H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQH-QKMHTV 35
Score = 27.3 bits (61), Expect = 0.99
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 229 NSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEG 262
+S +G + + C C ++F+ L+ H K +H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQK-MHTV 35
Score = 26.9 bits (60), Expect = 1.5
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 313 TTVHQAQK-YKCADCGRLFAQEHTL----RTHT 340
++ +K Y CA+C F+ + L + HT
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 26.9 bits (60), Expect = 1.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K + C +C ++F+ L H
Sbjct: 9 KPYSCAECKETFSDNNRLVQH 29
Score = 25.0 bits (55), Expect = 7.7
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
C C +TF+ L+ H
Sbjct: 12 SCAECKETFSDNNRLVQH 29
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.3 bits (85), Expect = 6e-04
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK-YT 294
G K Y CE C F Q L SH++ IH G +
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSS 41
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
G K Y CE+C + + L SH+
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 32.9 bits (76), Expect = 0.013
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K +PC+ CG F Q L H+ IH G
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLR-IHTG 36
Score = 30.5 bits (70), Expect = 0.083
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
+ C+ C F L SH++ +H G
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR-IHTGSG 38
Score = 29.4 bits (67), Expect = 0.18
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 210 KCDFCDKTFAHKPNLIAHM 228
C+ C F H L +H+
Sbjct: 13 PCEICGTRFRHLQTLKSHL 31
Score = 28.6 bits (65), Expect = 0.33
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSG 346
Y C CG F TL++H L +H+G
Sbjct: 12 YPCEICGTRFRHLQTLKSH-LRIHTG 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.3 bits (85), Expect = 6e-04
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
G K YKCE C F Q +L +H IH G
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAH-VLIHTGSG 38
Score = 31.7 bits (73), Expect = 0.032
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
G K Y CE C + QV +L +H+
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 30.6 bits (70), Expect = 0.065
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIK 264
+KC+ C F Q +L +H+ +H G
Sbjct: 12 YKCETCGARFVQVAHLRAHVL-IHTGSG 38
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C+ CG F +L HV IH G
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVL-IHTG 36
Score = 29.0 bits (66), Expect = 0.26
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSG 346
YKC CG F Q LR H L +H+G
Sbjct: 12 YKCETCGARFVQVAHLRAHVL-IHTG 36
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 210 KCDFCDKTFAHKPNLIAHM 228
KC+ C F +L AH+
Sbjct: 13 KCETCGARFVQVAHLRAHV 31
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 36.9 bits (85), Expect = 0.001
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIK 292
KC C F ++ L CE+C K Q+ L + G K
Sbjct: 19 QKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNKD-EGNESGKK 66
Score = 35.8 bits (82), Expect = 0.002
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSV 343
Q IH+G + C C + + + L + C C + QE L
Sbjct: 10 QKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDE-GN 61
Query: 344 HSG 346
SG
Sbjct: 62 ESG 64
Score = 31.6 bits (71), Expect = 0.075
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHM 228
+ C +CG F + L+ C+ C K + L
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRRKTP-------MCEKCRKDSCQEAALNKDE 59
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
G Y C +C K+F Q+ +L H Q
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVH-QRSCSQSG 38
Score = 32.6 bits (75), Expect = 0.014
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
+ C QCGKSFT + +L H
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVH 30
Score = 28.4 bits (64), Expect = 0.41
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 237 FKCDHCVKSFNQKPNLISH 255
+ C C KSF Q+ +L H
Sbjct: 12 YLCGQCGKSFTQRGSLAVH 30
Score = 28.0 bits (63), Expect = 0.62
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSG 346
Y C CG+ F Q +L H S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ-RSCSQ 36
Score = 27.2 bits (61), Expect = 1.3
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSHM 312
G Y C C KS+ Q +L H
Sbjct: 3 SGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 26.1 bits (58), Expect = 2.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 210 KCDFCDKTFAHKPNLIAHM 228
C C K+F + +L H
Sbjct: 13 LCGQCGKSFTQRGSLAVHQ 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.3 bits (82), Expect = 0.002
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 254 SHIKSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
S S G K ++C+EC F+ +L H H
Sbjct: 2 SS-GSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSHERTD 39
Score = 31.0 bits (71), Expect = 0.054
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 179 KKFPCDQCGKSFTLKQNLTYH 199
K F C +CG +F+ +L H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKH 31
Score = 29.9 bits (68), Expect = 0.14
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEGIK-YKC 267
S+ G + F+C C +F+ +L H++S HE
Sbjct: 5 SSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGP 43
Score = 28.7 bits (65), Expect = 0.33
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 282 SHVQAIHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
S + G K + C+ C +++ +L H+ +
Sbjct: 2 SS-GSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 28.7 bits (65), Expect = 0.44
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 310 SHMTTVHQAQK-YKCADCGRLFAQEHTLRTHTLSVHSG 346
S ++ +K ++C +CG F+ +L H L H
Sbjct: 2 SSGSS-GTGEKPFQCKECGMNFSWSCSLFKH-LRSHER 37
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.9 bits (81), Expect = 0.002
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
S K Y C EC K F + +L H Q IH
Sbjct: 4 GSSGTDSKSYNCNECGKAFTRIFHLTRH-QKIHTR 37
Score = 28.3 bits (64), Expect = 0.49
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C++CGK+FT +LT H IH
Sbjct: 11 KSYNCNECGKAFTRIFHLTRH-QKIHTR 37
Score = 27.2 bits (61), Expect = 1.1
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 232 HNGVR-FKCDHCVKSFNQKPNLISH 255
+ + C+ C K+F + +L H
Sbjct: 7 GTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 27.2 bits (61), Expect = 1.2
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 285 QAIHMGIK-YTCEVCSKSYNQVTNLLSH 311
+ K Y C C K++ ++ +L H
Sbjct: 4 GSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.4 bits (79), Expect = 0.004
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 257 KSVHEGIK-YKCEECTKTFAQKQNLLSHVQAIHMG 290
S G +KC +C + F Q+ L+ H + H
Sbjct: 4 GSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHAR 37
Score = 29.4 bits (66), Expect = 0.23
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 230 SAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHEG 262
S+ G FKC C + F Q+ L+ H + H
Sbjct: 5 SSGAGENPFKCSKCDRVFTQRNYLVQHER-THAR 37
Score = 28.3 bits (63), Expect = 0.51
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 169 GHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
G G G F C +C + FT + L H H
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHAR 37
Score = 28.3 bits (63), Expect = 0.51
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 310 SHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSG 346
S ++ +KC+ C R+F Q + L H H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHAR 37
Score = 25.6 bits (56), Expect = 4.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 210 KCDFCDKTFAHKPNLIAH 227
KC CD+ F + L+ H
Sbjct: 14 KCSKCDRVFTQRNYLVQH 31
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 35.3 bits (81), Expect = 0.009
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 207 VRIKCDFCDKTFAHKPNLIAHMNSAHN 233
C FCD+ FA +H H
Sbjct: 14 QHTPCLFCDRLFASAEETFSHCKLEHQ 40
Score = 27.6 bits (61), Expect = 3.8
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 294 TCEVCSKSYNQVTNLLSHMTTVHQ 317
C C + + SH HQ
Sbjct: 17 PCLFCDRLFASAEETFSHCKLEHQ 40
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 0.012
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 286 AIHMGIKYTCEVCSK-SYNQVTNLLSHMTTVHQAQ-KYKCADCGRLFAQEHTLRTHTLSV 343
AIH + C C+ + + L HM + Q KC C + F + L HT++
Sbjct: 18 AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAE 77
Query: 344 HS 345
HS
Sbjct: 78 HS 79
Score = 29.9 bits (66), Expect = 0.49
Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 208 RIKCDFCDKTFAHK-PNLIAHMNSAHNGVR-FKCDHCVKSFNQKPNLISHIKSVHE 261
C C+ L HM KC HC K F K L H + H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Score = 28.4 bits (62), Expect = 1.5
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 170 HRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIH 204
H C C K F K L YH + H
Sbjct: 44 HMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Score = 26.4 bits (57), Expect = 8.1
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 257 KSVHEGIKYKCEECTKTFAQK-QNLLSHVQAIHMGI-KYTCEVCSKSYNQVTNLLSHMTT 314
+++HE + C C + L H++ C+ C K + L H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 315 VHQAQK 320
H A+
Sbjct: 77 EHSAKP 82
Score = 26.1 bits (56), Expect = 9.2
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 236 RFKCDHCVKSFNQK-PNLISHIKSVHEGI-KYKCEECTKTFAQKQNLLSHVQAIH 288
C C + L H++ + KC+ C K F K L H A H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.1 bits (77), Expect = 0.017
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 286 AIHMGIKYTCEVCSK-SYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVH 344
I +C C + L HM + + + C CG+ ++ H ++ H
Sbjct: 28 EIVDKGSVSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Query: 345 S 345
+
Sbjct: 87 N 87
Score = 29.5 bits (65), Expect = 0.78
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 208 RIKCDFCDK-TFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVH 260
+ C C L HM + + F C HC K + H+ + H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEM-FTCHHCGKQLRSLAGMKYHVMANH 86
Score = 28.7 bits (63), Expect = 1.4
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 180 KFPCDQCGKSFTLKQNLTYHVNSIH 204
F C CGK + YHV + H
Sbjct: 62 MFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 27.1 bits (59), Expect = 4.6
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 236 RFKCDHC-VKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIH 288
C C L H++ + + C C K + HV A H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 31.3 bits (70), Expect = 0.043
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 290 GIKYTCEVCSKSYNQVTNLLSHMTTVHQAQ 319
GIK C C K Y+ V NL+ H+ H Q
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDAHDPQ 36
Score = 29.7 bits (66), Expect = 0.17
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 206 GVRIKCDFCDKTFAHKPNLIAHMNSAHN 233
G++ C FC K ++ NLI H+ AH+
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDAHD 34
Score = 27.4 bits (60), Expect = 1.00
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 229 NSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHE 261
+S +G++ C C K ++ NLI HI+ H+
Sbjct: 2 SSGSSGIKQHCRFCKKKYSDVKNLIKHIRDAHD 34
Score = 26.3 bits (57), Expect = 2.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 262 GIKYKCEECTKTFAQKQNLLSHVQAIH 288
GIK C C K ++ +NL+ H++ H
Sbjct: 7 GIKQHCRFCKKKYSDVKNLIKHIRDAH 33
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 34.8 bits (79), Expect = 0.073
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIH 288
+ ++ P + + G Y+C C+ +L +H A H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASH 203
Score = 34.8 bits (79), Expect = 0.076
Identities = 15/128 (11%), Positives = 31/128 (24%), Gaps = 9/128 (7%)
Query: 108 TEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEFNRSQFEKTFQNYSMTT 167
T + N +++D+ + + T N +
Sbjct: 87 TRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNAN--------ELSRSGN 138
Query: 168 TGHRGG-KGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIA 226
+ GG P+ + + + G +C C +L A
Sbjct: 139 VDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDA 198
Query: 227 HMNSAHNG 234
H+ S
Sbjct: 199 HVASHGLH 206
Score = 32.5 bits (73), Expect = 0.30
Identities = 13/103 (12%), Positives = 24/103 (23%), Gaps = 6/103 (5%)
Query: 107 KTEPNQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGG---TAGLEFNRSQFEKTFQNY 163
+ + T+ ++ SD + + + V GG +
Sbjct: 107 QKQAKDTDKSKAQVTYSDTGINNANELSRS-GNVDNEGGSNQKPMSTRIAEATSAIVSKH 165
Query: 164 SMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
+ C C +L HV S L
Sbjct: 166 PARVGLPP--TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 32.1 bits (72), Expect = 0.45
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 266 KCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTT 314
E + ++ + G Y C VCS +L +H+ +
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS 202
Score = 31.7 bits (71), Expect = 0.55
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEG 262
+ + P + +A +G ++C C +L +H+ S
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 29.8 bits (66), Expect = 2.6
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 294 TCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHS 345
E S ++ + T Y+C C + L H ++ H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAH-VASHG 204
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (68), Expect = 0.081
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 169 GHRGGKGPPVKKFPCDQCGKSFTLKQNLTYH 199
G G G K F C++C K+F+ + LT H
Sbjct: 1 GSSGSSGQKEKCFKCNKCEKTFSCSKYLTQH 31
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 31.2 bits (70), Expect = 0.096
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 265 YKCE--ECTKTFAQKQNLLSHVQAIHMGIK-------YTCE--VCSKSYNQVTNLLSHMT 313
KC+ EC ++ + +L H+ H+ C C + ++++H+
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 314 TVH 316
H
Sbjct: 62 AQH 64
Score = 29.2 bits (65), Expect = 0.44
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 184 DQCGKSFTLKQNLTYHVNSIHLGVR-------IKC--DFCDKTFAHKPNLIAHMNSAH 232
+C +S + +L H+ H+ + C + CD +++ H+N+ H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 28.9 bits (64), Expect = 0.47
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 11/63 (17%)
Query: 321 YKC--ADCGRLFAQEHTLRTHTLSVHSGVR-------LTCR--TCGLFCDSKRALTAHVR 369
KC +C + L+ H L H L C C D ++ H+
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 370 EAH 372
H
Sbjct: 62 AQH 64
Score = 28.5 bits (63), Expect = 0.80
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 240 DHCVKSFNQKPNLISHIKSVHEGIK-------YKCE--ECTKTFAQKQNLLSHVQAIH 288
C +S + +L H+ H C +C ++++H+ A H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
Score = 27.7 bits (61), Expect = 1.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 298 CSKSYNQVTNLLSHMTTVHQAQK-------YKC--ADCGRLFAQEHTLRTHTLSVH 344
C +S + + +L H+ H +Q C DC L ++ H + H
Sbjct: 9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.8 bits (67), Expect = 0.11
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMG 290
Y C C + F ++ L+ H Q IH G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 26.4 bits (58), Expect = 1.9
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSG 346
Y C C R F + L H +HSG
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 26.4 bits (58), Expect = 2.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLG 206
K + C C ++FT + L H IH G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.8 bits (54), Expect = 6.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 237 FKCDHCVKSFNQKPNLISHIKSVHEG 262
+ C C ++F ++ LI H + +H G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 30.3 bits (68), Expect = 0.13
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 169 GHRGGKGPPVKKFPCDQCGKSFTLKQNLTYHVNSIHLGVR 208
G G G K+ C+ CGK F +L H S H G +
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEK 39
Score = 29.9 bits (67), Expect = 0.18
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 264 KYKCEECTKTFAQKQNLLSHVQAIHMGIK-YTCEVCS 299
+ CE C K F +L H + H G K Y+ S
Sbjct: 12 QVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSS 47
Score = 28.4 bits (63), Expect = 0.51
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 236 RFKCDHCVKSFNQKPNLISHIKSVHEGIK-YKCEECT 271
+ C+ C K F +L H S H G K Y +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 0.89
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 320 KYKCADCGRLFAQEHTLRTHTLSVHSGVR 348
+ C CG++F + L H LS HSG +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLS-HSGEK 39
Score = 27.6 bits (61), Expect = 1.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVR-FKCDHC 242
C+ C K F +L H S H+G + +
Sbjct: 14 ACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
Score = 27.2 bits (60), Expect = 1.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 292 KYTCEVCSKSYNQVTNLLSHMTTVHQAQK-YKCADC 326
+ CE+C K + V +L H + H +K Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPS 46
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.8 bits (67), Expect = 0.17
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 177 PVKKFPC--DQCGKSFTLKQNLTYHVNSIHLGVR 208
P K F C C K+F + N+ H+ + HL R
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQT-HLEDR 47
Score = 27.9 bits (62), Expect = 0.83
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 264 KYKC--EECTKTFAQKQNLLSHVQAIHMG 290
++C CTKTF ++ N+ SH+Q H+
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQ-THLE 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 31.6 bits (71), Expect = 0.27
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 228 MNSAHNGVRFKCDHCVKSFNQKPNL-ISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQA 286
+ + KC + + + K + KC + L QA
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQA 104
Query: 287 IHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLS 342
C C + + + ++ H+ ++ C +C H +
Sbjct: 105 HCEFALMDCPQCQRPFQK-FHINIHILKDCPRRQVSCDNCAASM-AFEDKEIHDQN 158
Score = 30.4 bits (68), Expect = 0.70
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 3/108 (2%)
Query: 179 KKFPCDQCGKSFTLKQNL-TYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRF 237
C + Q L + +KC + + +
Sbjct: 52 AGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALM 111
Query: 238 KCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQ 285
C C + F + ++ HI + C+ C + ++ H Q
Sbjct: 112 DCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASM-AFEDKEIHDQ 157
Score = 30.4 bits (68), Expect = 0.73
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 182 PCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDH 241
C QC + F K ++ H+ ++ CD C + A + + H + H
Sbjct: 112 DCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQNCPL-ALEHHHH 168
Query: 242 C 242
Sbjct: 169 H 169
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 29.3 bits (66), Expect = 0.39
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 166 TTTGHRGGKGPPVKKFPCDQ--CGKSFTLKQNLTYHVNSIHLGVR-IKCDF--CDKTFAH 220
+ + ++ C CGK++ +L H H G + C + C++ FA
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFAR 61
Query: 221 KPNLIAHM 228
L H
Sbjct: 62 SDELSRHR 69
Score = 28.1 bits (63), Expect = 1.0
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 292 KYTCEV--CSKSYNQVTNLLSHMTTVHQAQK-YKCA--DCGRLFAQEHTLRTH 339
+ C C K+Y + ++L +H T H +K + C+ C R FA+ L H
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRT-HTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 27.4 bits (61), Expect = 2.4
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 257 KSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCEV--CSKSYNQVTNLLS 310
+ I+ + C C KT+ + +L +H + H G K ++C C + + + L
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSR 67
Query: 311 HMTT 314
H T
Sbjct: 68 HRRT 71
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 29.4 bits (66), Expect = 0.45
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 207 VRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKY 265
V C+ C ++ K + H+++ N C C K F + SH+K + EG KY
Sbjct: 9 VFFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSHVKCISEGQKY 65
Score = 28.7 bits (64), Expect = 0.75
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 235 VRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKY 293
V F C+ C +S +K + H+ + C +C K F + SHV+ I G KY
Sbjct: 9 VFFTCNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDF-WGDDYKSHVKCISEGQKY 65
Score = 26.4 bits (58), Expect = 5.4
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHT 340
+TC C +S + + H++ + C DCG+ F + ++H
Sbjct: 11 FTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWGD-DYKSHV 56
Score = 26.4 bits (58), Expect = 6.1
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 267 CEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKY 321
C C ++ +K + HV +C C K + SH+ + + QKY
Sbjct: 13 CNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWGDD-YKSHVKCISEGQKY 65
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 28.1 bits (63), Expect = 0.46
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 178 VKKFPCDQCGKSFTLKQNLTYHV 200
+K F C C +SF+ +L H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHR 31
Score = 28.1 bits (63), Expect = 0.50
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 260 HEGIK-YKCEECTKTFAQKQNLLSHVQAIHM 289
GIK ++C +C ++F++ +L H + HM
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRK-RHM 35
Score = 27.3 bits (61), Expect = 1.1
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 232 HNGVR-FKCDHCVKSFNQKPNLISHIK 257
G++ F+C C +SF++ +L H K
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 26.1 bits (58), Expect = 2.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 287 IHMGIK-YTCEVCSKSYNQVTNLLSHMTT 314
GIK + C C +S+++ +L H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 24.6 bits (54), Expect = 8.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 320 KYKCADCGRLFAQEHTLRTH 339
++C DC R F++ L H
Sbjct: 11 PFQCPDCDRSFSRSDHLALH 30
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.2 bits (67), Expect = 0.67
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 413 ENQRMLGNGGGDQVRGNGDDIRGDGDQGEEEEESEMEEEEEE 454
E G ++ NGD+ + + +++++ + +EEEEE
Sbjct: 30 EQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEE 71
Score = 27.6 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 430 GDDIRGDGDQGEEEEESEMEEEEEEA 455
+D D D+ +++++ E EEEEEE
Sbjct: 48 DEDEDEDEDEDDDDDDDEDEEEEEEV 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.70
Identities = 63/445 (14%), Positives = 113/445 (25%), Gaps = 172/445 (38%)
Query: 2 VTYSYNTPSPAPSTTSR-RDSFPPPHPLGQNGF----DPTGQVK--SEYNYY------QL 48
+ + P+ + S+ ++ F P GF +PT + ++ Y
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 49 SSDEKFEILKSISASFTPGYGGFLPNTPPLGHHYLSPSGLPGKAEYLEIHFCFVYTWVKT 108
+ ++L F Y L G +IH ++
Sbjct: 76 KVGQFDQVLNLCLTEFENCY-------------------LEGN----DIH-ALAAKLLQE 111
Query: 109 EP-----------------NQTNHPPSETEDSDDPLGESMVVEPEYTPVTQIGGTAGLEF 151
P + +S L + V + G A L
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNS--ALFRA---------VGE--GNAQL-V 157
Query: 152 NRSQFEKTFQNYSMTTTGHRGGKGPPVKKFPCDQCGKSFTLKQNL--TYHVNSIHLGVRI 209
+ F GG+G F ++ L ++L TYHV V
Sbjct: 158 --AIF---------------GGQGNTDDYF--EE------L-RDLYQTYHVL-----VG- 185
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPN-------LISHIKSVHEG 262
D + LI A + + + + P+ L+S
Sbjct: 186 --DLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLS-------- 233
Query: 263 IKYKCEECTKTFAQKQNLLSHVQAIHMGIKY--TCEVCSKSYNQVTNLLSHMTTVHQ--- 317
+ L+ +Q H Y T ++ + ++ + L T Q
Sbjct: 234 -------IPISC----PLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 318 -AQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGC- 375
A D F + T+ GVR + EA+P
Sbjct: 279 TAVAIAETDSWESF-FVSVRKAITVLFFIGVR-----------------CY--EAYPNTS 318
Query: 376 -------EYKKRGRGRPK--LEVPG 391
+ + G P L +
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISN 343
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.9 bits (69), Expect = 0.71
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 203 IHLGVRIKCDFCD---KTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIK 257
I G ++ + + K H N A R + + + + +L I
Sbjct: 172 IRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 30.2 bits (67), Expect = 1.2
Identities = 4/47 (8%), Positives = 14/47 (29%)
Query: 239 CDHCVKSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQ 285
+ +K + H + + E+ + ++L +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 30.2 bits (67), Expect = 1.3
Identities = 6/49 (12%), Positives = 17/49 (34%)
Query: 181 FPCDQCGKSFTLKQNLTYHVNSIHLGVRIKCDFCDKTFAHKPNLIAHMN 229
+ + K T H N R++ + ++ + +L ++
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIH 229
Score = 29.4 bits (65), Expect = 2.0
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 7/61 (11%)
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTC 354
E K + ++ H ++ + ++ LR L+
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI-------HLSVLRQ 235
Query: 355 G 355
G
Sbjct: 236 G 236
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (61), Expect = 0.96
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 265 YKCEECTKTFAQKQNLLSHVQAIHMGIK 292
++C EC + F Q +L+ H Q +HMG K
Sbjct: 13 HQCRECGEIFFQYVSLIEH-QVLHMGQK 39
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.97
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 424 DQVRGNGDDIRGDGDQGEEEEESEMEEEEEEA 455
D++ + IR + EE+ ++E + +
Sbjct: 78 DRLTQEPESIR----KWREEQRKRLQELDAAS 105
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.4 bits (61), Expect = 1.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 177 PVKKFPCDQCGKSFTLKQNLTYHVNS 202
P + + C C + F Q L H+N
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNV 28
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK
SGX research center for structural genomics, NYSGXRC,
function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Length = 145
Score = 29.2 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 385 PKLEVPGGGRMV---GNVVGGSGVGGG 408
++ + GGG V V+G GV GG
Sbjct: 99 QRIIIFGGGLPVIFNEQVIGAVGVSGG 125
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 29.6 bits (66), Expect = 1.6
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 12/123 (9%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEE 269
KC C K + +S H F C C K+ + +VH Y C+
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSC-FLCMVCKKNLDSTTV------AVHGDEIY-CKS 60
Query: 270 C-TKTFAQK---QNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCAD 325
C K + K + + + + G + ++ TN + C
Sbjct: 61 CYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPR 120
Query: 326 CGR 328
CG+
Sbjct: 121 CGQ 123
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 230 SAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIK 264
S +G F C++C K F K +L +H++ +H K
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLR-IHTNEK 36
Score = 26.0 bits (56), Expect = 2.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 211 CDFCDKTFAHKPNLIAHM 228
C++C+K F K +L AH+
Sbjct: 12 CEYCNKVFKFKHSLQAHL 29
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 29.3 bits (66), Expect = 2.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 438 DQGEEEEESEMEEEEEEAGFE 458
++GE E+ E EEAG
Sbjct: 100 EEGESVEDVARREAIEEAGLI 120
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 26.5 bits (59), Expect = 2.3
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 254 SHIKSVHEGIK-YKC--EECTKTFAQKQNLLSHVQAIHMGIK-YTCE 296
S S G K + C C F++ L H + H G+K
Sbjct: 2 SSGSS-GTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPS 46
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 26.1 bits (58), Expect = 2.4
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 320 KYKCADCGRLFA-QEHT---LRTHT 340
+ C C R FA QEH R+HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 24.6 bits (54), Expect = 8.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNS 202
+ F C+ C ++F +++L H S
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.4 bits (57), Expect = 2.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHLGV 207
K + C CG F K ++YHV S V
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 26.3 bits (57), Expect = 2.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHS 345
+ C +C F++E +L+ HTL HS
Sbjct: 11 FFCNECDCRFSEEASLKRHTLQTHS 35
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 26.3 bits (57), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 179 KKFPCDQCGKSFTLKQNLTYHVNSIHL 205
K + CD CGK + + L+YH HL
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHL 32
Score = 25.5 bits (55), Expect = 6.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 293 YTCEVCSKSYNQVTNLLSHMTTVHQAQK 320
Y C++C K Y L H H A++
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEE 35
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 29.1 bits (64), Expect = 3.3
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 8/61 (13%)
Query: 210 KCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGIKYKCEE 269
C + + HN C C K+F + + G C
Sbjct: 278 LCSMREGSLQC--------ECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAA 329
Query: 270 C 270
Sbjct: 330 A 330
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 28.8 bits (64), Expect = 3.3
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 229 NSAHNGVRFKCDHCV-KSFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQ 278
++ + VR K+F + NL KS E I+ + E + +
Sbjct: 109 HTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLH 159
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.5 bits (55), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 321 YKCADCGRLFAQEHTLRTHTLSVHSG 346
Y C+ CG+ F+ +H + TH VH+G
Sbjct: 4 YSCSVCGKRFSLKHQMETH-YRVHTG 28
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 27.6 bits (60), Expect = 3.9
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 211 CDFCDKTFAHKPNLIAHMNS---AHNGVRFKCDHCVKSFNQKPNLISHIKSVHEGI--KY 265
C C + +AH S A+ R+ + + + + +G
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 266 KCEECTKTFAQKQNLLSHVQ 285
C C TF+ SH
Sbjct: 95 CCPVCNMTFSSPVVAESHYI 114
Score = 27.2 bits (59), Expect = 6.7
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 295 CEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLT---- 350
C+VCS + L+H + A K + + +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 351 -CRTCGLFCDSKRALTAH 367
C C + S +H
Sbjct: 95 CCPVCNMTFSSPVVAESH 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 27.8 bits (61), Expect = 4.2
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 9/77 (11%)
Query: 205 LGVRIKCDFCDKTFAHKPNLIAHMNSAHNGVRFKCDHCVKSFNQKPNLISHIKSVHE--- 261
+ C C + H + + + C +C K + +
Sbjct: 5 SMGIVSCTACGQQVNHFQKDSIYRHPSLQV--LICKNCFKYYMSDDISRDSDGMDEQCRW 62
Query: 262 ----GIKYKCEECTKTF 274
G C+ C F
Sbjct: 63 CAEGGNLICCDFCHNAF 79
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.0 bits (64), Expect = 4.5
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 174 KGPPV---KKFPCDQCGKSFTLKQNLTYHVNSIH 204
K P+ + C+ C F+ L+ H+ S H
Sbjct: 107 KVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like
muramidase, NLPC/P60 LD endopeptidase, STR genomics;
2.23A {Staphylococcus aureus subsp}
Length = 313
Score = 28.1 bits (62), Expect = 5.9
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 245 SFNQKPNLISHIKSVHEGIKYKCEECTKTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQ 304
S PN +S +S+ +G+KY E T Q ++ S +Q+ + G + V +
Sbjct: 70 SLGLPPNSLSTEESIKQGVKYFSELLTSAEQQGVDIDSVIQSYNYGGGFLNYV-RSHGKK 128
Query: 305 VTNLLSHMTTVHQAQKYKC 323
T L+ + ++ K
Sbjct: 129 YTYELAEQFSKEKSGGQKA 147
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 6.3
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 396 VGNVVGGSGVGGGQRMVENQRMLGNGG 422
VG GSG+GG + +
Sbjct: 1044 VG-NCSGSGMGGVSALRGMFKDRFKDE 1069
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 24.9 bits (55), Expect = 6.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 179 KKFPCD--QCGKSFTLKQNLTYHVNSIHLGVR 208
+ F C CGK FT L H H G +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK 31
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 28.3 bits (62), Expect = 6.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 391 GGGRMVGNVVGGSGVGGGQRMVENQRMLGNGGGDQVRGN-GDDI 433
G + N +GGSG N ++GN + ++G G+DI
Sbjct: 320 AQGVTIENAIGGSG---------NDLLIGNDAANVLKGGAGNDI 354
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 28.0 bits (61), Expect = 6.7
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 428 GNGDDIRGDGDQGEEEEESEMEEEEEE 454
G + + D+ E +E+ + EE+++
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEEDDDH 388
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (54), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 266 KCEECTKTFAQKQNLLSHVQAIHMG 290
+C+EC K F L+ H QA+H G
Sbjct: 14 ECQECGKIFRHSSLLIEH-QALHAG 37
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 67
Score = 25.7 bits (56), Expect = 7.3
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 19/69 (27%)
Query: 317 QAQKYKCADCGRLFAQEHTLRTHTLSVHSGVRLTCRTCGLFCDSKRALTAHVREAHPGCE 376
Q + +C C L + +CR +FC R H C
Sbjct: 12 QKSRRRCFQCQT-----------KLELVQQELGSCRCGYVFCMLHRLPEQH------DCT 54
Query: 377 --YKKRGRG 383
+ RG G
Sbjct: 55 FDHMGRGSG 63
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.9 bits (61), Expect = 7.9
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 272 KTFAQKQNLLSHVQAIHMGIKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCGRLFA 331
+TF K L A+ IK + + + +A+ C C R F
Sbjct: 254 ETFFFKSYALLDAAAVENLIK----------SDFEHSYCRGSLRSEAKGIYCPFCSRWFK 303
Query: 332 QEHTLRTHTLS 342
+H +
Sbjct: 304 TSSVFESHLVG 314
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 8.6
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 291 IKYTCEVCSKSYNQVTNLLSHMTTVHQAQKYKCADCG 327
I TC C ++ S V CA CG
Sbjct: 20 IVLTCPECKVYPPKIVERFSEGDVV-------CALCG 49
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 28.0 bits (62), Expect = 8.8
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 7 NTPSPAPSTTSRRDSFPPPHPLGQNGFDPTGQVKSEYNYYQLSSDEK 53
N A T + ++ P + + PT K+ +N Y+ D
Sbjct: 55 NECEGAAEETYQELNYEPSISADKLTWTPTRLAKTVFNTYEDDDDFN 101
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 27.6 bits (62), Expect = 8.8
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 40/109 (36%)
Query: 376 EYKKRGRGRPKLEVPGGGRMV-------GNVVGGSGVGGGQRMVENQRMLGNGGGDQVRG 428
EY ++GRG G + G +V +G ++ ML + GG VR
Sbjct: 265 EYPRKGRG-------TQGVIGIQTTERNGKLVRAVLLGS-----TDEVMLISDGGTLVRT 312
Query: 429 NGDDIR--------------GDGDQ-------GEEEEESEMEEEEEEAG 456
G +I G++ EE E +E A
Sbjct: 313 RGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLEEPEDVVDEAVAI 361
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.417
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,027,501
Number of extensions: 423749
Number of successful extensions: 2817
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2307
Number of HSP's successfully gapped: 864
Length of query: 458
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 361
Effective length of database: 3,993,456
Effective search space: 1441637616
Effective search space used: 1441637616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)