Query psy2839
Match_columns 196
No_of_seqs 199 out of 1158
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:13:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.7 5.7E-19 2E-23 156.5 -0.0 89 103-192 6-96 (320)
2 3v5u_A Uncharacterized membran 99.6 1.3E-16 4.4E-21 141.5 0.1 80 114-193 175-256 (320)
3 1xl4_A Inward rectifier potass 17.4 2.1E+02 0.0071 24.5 5.6 24 163-186 98-123 (301)
4 2jp3_A FXYD domain-containing 9.0 3.6E+02 0.012 18.9 3.7 19 89-107 12-30 (67)
5 2jsx_A Protein NAPD; TAT, proo 7.6 1.5E+02 0.0051 21.3 1.3 19 15-34 73-91 (95)
6 1tc3_C Protein (TC3 transposas 6.5 2.2E+02 0.0074 15.7 1.4 15 124-138 23-37 (51)
7 2y69_L Cytochrome C oxidase su 6.2 1.7E+02 0.0057 20.0 0.8 9 22-30 18-26 (63)
8 3ge6_A Nitroreductase; structu 5.1 3.3E+02 0.011 20.6 2.1 28 125-152 168-196 (212)
9 2xvy_A Chelatase, putative; me 4.9 2.5E+02 0.0085 22.6 1.3 19 139-157 10-28 (269)
10 3e10_A Putative NADH oxidase; 4.9 3.5E+02 0.012 19.8 2.1 27 126-152 124-150 (168)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.71 E-value=5.7e-19 Score=156.53 Aligned_cols=89 Identities=25% Similarity=0.301 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHhhccccccHHHHHHHhcCCccccceeeeeccCCchhHHHHHHHhhcCCCceeecc--chHHHHHHH
Q psy2839 103 ILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAG--GSAPELFTS 180 (196)
Q Consensus 103 ll~llylFl~L~iva~~yfvpsl~~Ia~~l~Ise~VaGaTlLA~GTSaPELftsiiAv~~g~~dIaVGn--GSniFNil~ 180 (196)
+++++..+.+ .+.+++||+++++.+|+++|+||.++|+|++|+|||+||++++++|+++|+.|+++|| |||+||+++
T Consensus 6 ~~~l~~g~~~-l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nill 84 (320)
T 3v5u_A 6 VGYFLLGLIL-LYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGL 84 (320)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHH
Confidence 3334444433 4567778999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhheeeeeeccc
Q psy2839 181 VIGVFVSFDDVG 192 (196)
Q Consensus 181 I~Gv~~lisp~~ 192 (196)
|+|++++++|..
T Consensus 85 vlG~~~li~p~~ 96 (320)
T 3v5u_A 85 VLGLSAIISPII 96 (320)
T ss_dssp HHHHHHHHSCBC
T ss_pred HHHHHHHHcccc
Confidence 999999998864
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.58 E-value=1.3e-16 Score=141.48 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=75.2
Q ss_pred HHHhhccccccHHHHHHHhcCCccccceeeeeccCCchhHHHHHHHhhcCCCceeecc--chHHHHHHHhhheeeeeecc
Q psy2839 114 AVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAG--GSAPELFTSVIGVFVSFDDV 191 (196)
Q Consensus 114 ~iva~~yfvpsl~~Ia~~l~Ise~VaGaTlLA~GTSaPELftsiiAv~~g~~dIaVGn--GSniFNil~I~Gv~~lisp~ 191 (196)
...++++|+++++.+++.+|+||.++|+|++|+|||+||+++++.++++++.|+++|| |||+||+++++|+++++.|.
T Consensus 175 l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~p~ 254 (320)
T 3v5u_A 175 VLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFMHL 254 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHSCB
T ss_pred HHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 4456779999999999999999999999999999999999999999999999999999 99999999999999999876
Q ss_pred ce
Q psy2839 192 GI 193 (196)
Q Consensus 192 ~i 193 (196)
.+
T Consensus 255 ~~ 256 (320)
T 3v5u_A 255 PA 256 (320)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 3
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=17.42 E-value=2.1e+02 Score=24.46 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=13.2
Q ss_pred CCCceeecc--chHHHHHHHhhheee
Q psy2839 163 SFDDVGIAG--GSAPELFTSVIGVFV 186 (196)
Q Consensus 163 g~~dIaVGn--GSniFNil~I~Gv~~ 186 (196)
|.+|+..-+ |-.+..+..+.|+..
T Consensus 98 GYGDi~P~t~~gr~~~~~~~l~G~~~ 123 (301)
T 1xl4_A 98 GYGKLIPIGPLANTLVTLEALCGMLG 123 (301)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 666776655 555445555555443
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.04 E-value=3.6e+02 Score=18.85 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=10.0
Q ss_pred cchhccchhHHHHHHHHHH
Q psy2839 89 FTMEQKRNGAVILHILGVL 107 (196)
Q Consensus 89 f~~~~~~~g~vil~ll~ll 107 (196)
+.|+..|.+++++..++++
T Consensus 12 YDY~tLRigGLifA~vLfi 30 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCI 30 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHH
T ss_pred cchHHheecchhhHHHHHH
Confidence 3345566776665444433
No 5
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=7.57 E-value=1.5e+02 Score=21.33 Aligned_cols=19 Identities=42% Similarity=0.772 Sum_probs=11.5
Q ss_pred ceehhhcccccCCCCCCCCC
Q psy2839 15 TLFYHFFHYDEGEDSNRSHG 34 (196)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (196)
+|-||++- +++++..|||-
T Consensus 73 ~lvy~~~e-~~~~~~~~~~~ 91 (95)
T 2jsx_A 73 SLVYHQQE-EQGEETPRSHH 91 (95)
T ss_dssp EESSCCCC-CCCCSSCCCCC
T ss_pred eEEEEEec-ccccccccccc
Confidence 46677654 45666667663
No 6
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=6.50 E-value=2.2e+02 Score=15.71 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=12.3
Q ss_pred cHHHHHHHhcCCccc
Q psy2839 124 SLDVIIDRLQVQEDV 138 (196)
Q Consensus 124 sl~~Ia~~l~Ise~V 138 (196)
+...||+.+|+|..-
T Consensus 23 s~~~IA~~lgis~~T 37 (51)
T 1tc3_C 23 SLHEMSRKISRSRHC 37 (51)
T ss_dssp CHHHHHHHHTCCHHH
T ss_pred CHHHHHHHHCcCHHH
Confidence 678999999998653
No 7
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.18 E-value=1.7e+02 Score=20.02 Aligned_cols=9 Identities=56% Similarity=1.117 Sum_probs=5.2
Q ss_pred ccccCCCCC
Q psy2839 22 HYDEGEDSN 30 (196)
Q Consensus 22 ~~~~~~~~~ 30 (196)
||.||..+|
T Consensus 18 h~~eGp~sN 26 (63)
T 2y69_L 18 HYEEGPGKN 26 (63)
T ss_dssp CCCCSTTTS
T ss_pred CCCCCCCCc
Confidence 676665443
No 8
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=5.11 E-value=3.3e+02 Score=20.61 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHhcC-CccccceeeeeccCCchh
Q psy2839 125 LDVIIDRLQV-QEDVAGATFMAAGGSAPE 152 (196)
Q Consensus 125 l~~Ia~~l~I-se~VaGaTlLA~GTSaPE 152 (196)
-+.+.+.|++ ++...=+.++|+|-..++
T Consensus 168 ~~~v~~~L~l~p~~~~~~~~ialGy~~~~ 196 (212)
T 3ge6_A 168 KDQIAEAFGMEKDRYVPVMLLSIGKAVDA 196 (212)
T ss_dssp HHHHHHHTTCCSSSEEEEEEEEEECBSSC
T ss_pred HHHHHHHhCCCCCCceEEEEEEEeCCCCC
Confidence 5789999999 888777888999987765
No 9
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=4.90 E-value=2.5e+02 Score=22.64 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=14.9
Q ss_pred cceeeeeccCCchhHHHHH
Q psy2839 139 AGATFMAAGGSAPELFTSV 157 (196)
Q Consensus 139 aGaTlLA~GTSaPELftsi 157 (196)
.|+.++|+||+-||---.+
T Consensus 10 ~aillv~hGS~~~~~~~~~ 28 (269)
T 2xvy_A 10 TGILLVAFGTSVEEARPAL 28 (269)
T ss_dssp EEEEEEECCCCCTTTTHHH
T ss_pred ceEEEEeCCCCcHHHHHHH
Confidence 4788999999999764443
No 10
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=4.86 E-value=3.5e+02 Score=19.78 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHhcCCccccceeeeeccCCchh
Q psy2839 126 DVIIDRLQVQEDVAGATFMAAGGSAPE 152 (196)
Q Consensus 126 ~~Ia~~l~Ise~VaGaTlLA~GTSaPE 152 (196)
+.+.+.|++++...=+.++++|...++
T Consensus 124 ~~~~~~l~lp~~~~~~~~i~lGyp~~~ 150 (168)
T 3e10_A 124 KNLKEMFNLKSNIKPFCVISVGYPENS 150 (168)
T ss_dssp HHHHHHTTCCTTEEEEEEEEEECBSSC
T ss_pred HHHHHHcCcCCCceEEEEEEEeccCCC
Done!