Query psy2839
Match_columns 196
No_of_seqs 199 out of 1158
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 18:13:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2839.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2839hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l0oc_ a.4.13.2 (C:) SigmaF { 10.2 51 0.0037 19.9 1.3 16 122-137 31-46 (57)
2 d1ywqa1 d.90.1.1 (A:2-200) Hyp 7.6 82 0.0059 22.0 1.7 25 124-148 155-179 (199)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 7.1 1.5E+02 0.011 21.9 3.1 12 131-142 53-64 (447)
4 d1mt5a_ c.117.1.1 (A:) Fatty a 6.0 2E+02 0.015 23.1 3.6 29 159-187 188-218 (537)
5 d1bkja_ d.90.1.1 (A:) Flavin r 5.6 1.2E+02 0.0088 22.5 1.8 29 122-150 132-160 (239)
6 d1jhfa1 a.4.5.2 (A:2-72) LexA 5.5 2.3E+02 0.017 17.3 3.0 18 118-135 20-37 (71)
7 d2cyua1 a.9.1.1 (A:2-40) E3-bi 5.4 1.7E+02 0.012 16.6 2.0 17 121-137 1-17 (39)
8 d1rlma_ c.108.1.10 (A:) Sugar 5.3 1.9E+02 0.014 20.4 2.7 14 124-137 194-207 (269)
9 d1rp3a1 a.4.13.1 (A:87-163) Si 5.3 1.3E+02 0.0094 18.5 1.5 16 122-137 26-41 (77)
10 d1jw3a_ d.208.1.1 (A:) Hypothe 5.2 2.1E+02 0.015 19.9 2.8 26 136-161 8-33 (140)
No 1
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.21 E-value=51 Score=19.91 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=13.9
Q ss_pred cccHHHHHHHhcCCcc
Q psy2839 122 VPSLDVIIDRLQVQED 137 (196)
Q Consensus 122 vpsl~~Ia~~l~Ise~ 137 (196)
-|+.+.||+.+++|+.
T Consensus 31 ePT~~EiA~~l~~~~e 46 (57)
T d1l0oc_ 31 APTVTEIADHLGISPE 46 (57)
T ss_dssp CCBHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHCcCHH
Confidence 6889999999999875
No 2
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]}
Probab=7.61 E-value=82 Score=22.02 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=20.9
Q ss_pred cHHHHHHHhcCCccccceeeeeccC
Q psy2839 124 SLDVIIDRLQVQEDVAGATFMAAGG 148 (196)
Q Consensus 124 sl~~Ia~~l~Ise~VaGaTlLA~GT 148 (196)
.-+.+.+.||||+...=+.+|++|-
T Consensus 155 ~~~~v~e~l~iP~~~~~~~~l~iG~ 179 (199)
T d1ywqa1 155 VDAEVKETWNIPAEWSLVGQMPFGE 179 (199)
T ss_dssp THHHHHHHTTCCTTEEEEEEEEEEE
T ss_pred chHHHHHHhCCCCCCEEEEEEEEEC
Confidence 3578999999999887777889984
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.07 E-value=1.5e+02 Score=21.87 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=8.9
Q ss_pred HhcCCcccccee
Q psy2839 131 RLQVQEDVAGAT 142 (196)
Q Consensus 131 ~l~Ise~VaGaT 142 (196)
++|+++.-+|..
T Consensus 53 ~~g~s~~~~g~~ 64 (447)
T d1pw4a_ 53 EQGFSRGDLGFA 64 (447)
T ss_dssp SSTTCSSCHHHH
T ss_pred HhCcCHHHHHHH
Confidence 478888887753
No 4
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.97 E-value=2e+02 Score=23.15 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=17.9
Q ss_pred HhhcCCCceeecc--chHHHHHHHhhheeee
Q psy2839 159 GVFVSFDDVGIAG--GSAPELFTSVIGVFVS 187 (196)
Q Consensus 159 Av~~g~~dIaVGn--GSniFNil~I~Gv~~l 187 (196)
++-.|-..+++|+ |..|=.=.-..|++++
T Consensus 188 avaag~~~~a~GtD~gGSiR~PAa~cGv~Gl 218 (537)
T d1mt5a_ 188 LIGSGGSPLGLGTDIGGSIRFPSAFCGICGL 218 (537)
T ss_dssp HHGGGSCSEEEEEESSSTTHHHHHHHTCEEE
T ss_pred cccccccccccccccccccchhhhhcCceee
Confidence 3344677899999 4444455556666665
No 5
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]}
Probab=5.60 E-value=1.2e+02 Score=22.54 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=23.2
Q ss_pred cccHHHHHHHhcCCccccceeeeeccCCc
Q psy2839 122 VPSLDVIIDRLQVQEDVAGATFMAAGGSA 150 (196)
Q Consensus 122 vpsl~~Ia~~l~Ise~VaGaTlLA~GTSa 150 (196)
....+.+.+.|+||+...=+..|++|--.
T Consensus 132 ~~~~~~v~~~L~lP~~~~~v~~l~iGyP~ 160 (239)
T d1bkja_ 132 RNSAAQVDELLGLPENSAVLFGMCLGHPD 160 (239)
T ss_dssp GGGHHHHHHHTTCCTTEEEEEEEEEECBS
T ss_pred cccHHHHHHHcCCCCCcEEEEEEEeecCC
Confidence 33457899999999998888888998743
No 6
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=5.49 E-value=2.3e+02 Score=17.28 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.6
Q ss_pred hccccccHHHHHHHhcCC
Q psy2839 118 DEFFVPSLDVIIDRLQVQ 135 (196)
Q Consensus 118 ~~yfvpsl~~Ia~~l~Is 135 (196)
..=..|+...|++.+|+.
T Consensus 20 ~~G~~Ps~rei~~~~g~~ 37 (71)
T d1jhfa1 20 QTGMPPTRAEIAQRLGFR 37 (71)
T ss_dssp HHSSCCCHHHHHHHTTCS
T ss_pred HhCCCCCHHHHHHHcCCC
Confidence 333589999999999983
No 7
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=5.39 E-value=1.7e+02 Score=16.55 Aligned_cols=17 Identities=6% Similarity=0.352 Sum_probs=14.5
Q ss_pred ccccHHHHHHHhcCCcc
Q psy2839 121 FVPSLDVIIDRLQVQED 137 (196)
Q Consensus 121 fvpsl~~Ia~~l~Ise~ 137 (196)
++|++..+|+..|++..
T Consensus 1 iSP~arkla~e~gidl~ 17 (39)
T d2cyua1 1 LSPAIRRLLAEHNLDAS 17 (39)
T ss_dssp CCCTHHHHHHHHTCCGG
T ss_pred CCHHHHHHHHHcCCCHH
Confidence 47999999999999765
No 8
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}
Probab=5.28 E-value=1.9e+02 Score=20.36 Aligned_cols=14 Identities=7% Similarity=0.361 Sum_probs=11.7
Q ss_pred cHHHHHHHhcCCcc
Q psy2839 124 SLDVIIDRLQVQED 137 (196)
Q Consensus 124 sl~~Ia~~l~Ise~ 137 (196)
++..|++++|+++.
T Consensus 194 al~~l~~~lgi~~~ 207 (269)
T d1rlma_ 194 GISRLLKRWDLSPQ 207 (269)
T ss_dssp HHHHHHHHHTCCGG
T ss_pred HHHHHhhhhccccc
Confidence 67889999999864
No 9
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=5.27 E-value=1.3e+02 Score=18.47 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.9
Q ss_pred cccHHHHHHHhcCCcc
Q psy2839 122 VPSLDVIIDRLQVQED 137 (196)
Q Consensus 122 vpsl~~Ia~~l~Ise~ 137 (196)
-|..+.||+.+||+..
T Consensus 26 ~Pt~~EiA~~lg~s~~ 41 (77)
T d1rp3a1 26 EPTDEEVAKELGISTE 41 (77)
T ss_dssp CCCHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHCcCHH
Confidence 6889999999999875
No 10
>d1jw3a_ d.208.1.1 (A:) Hypothetical protein MTH1598 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=5.18 E-value=2.1e+02 Score=19.92 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=0.0
Q ss_pred ccccceeeeeccCCchhHHHHHHHhh
Q psy2839 136 EDVAGATFMAAGGSAPELFTSVIGVF 161 (196)
Q Consensus 136 e~VaGaTlLA~GTSaPELftsiiAv~ 161 (196)
++-|-+-+-|.|.|++|+|.+.+-..
T Consensus 8 dHtADv~i~~~g~tleelf~~aa~am 33 (140)
T d1jw3a_ 8 DVTADAGFWAYGHDLEEVFENAALAM 33 (140)
T ss_dssp CCSSEEEEEEECSSSHHHHHHHHHHH
T ss_pred CccccEEEEEEECCHHHHHHHHHHHH
Done!