RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2839
(196 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 146 bits (369), Expect = 1e-40
Identities = 71/125 (56%), Positives = 89/125 (71%), Gaps = 9/125 (7%)
Query: 62 SVPVWPTSQTE-KPHGEVKKDPLFPPDPFTMEQKRNGAVILHILGVLYMFVALAVVCDEF 120
S P Q + P E +PPD F++E++R G V+LHI G++Y+FVALA+VCDE+
Sbjct: 425 SPSALPPGQPDLHPKAE------YPPDLFSVEERRQGWVVLHIFGMMYVFVALAIVCDEY 478
Query: 121 FVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAG--GSAPELF 178
FVP+L VI D+LQ+ EDVAGATFMAAGGSAPELFTS+IGVF+S +VGI GSA
Sbjct: 479 FVPALGVITDKLQISEDVAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNI 538
Query: 179 TSVIG 183
VIG
Sbjct: 539 LFVIG 543
Score = 33.0 bits (75), Expect = 0.091
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 134 VQEDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAGGSAPELFTSVIGV 184
+ E++ G T +AAG S P+L TSVI D+ ++ +F +G+
Sbjct: 965 ISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGL 1015
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino acids
and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 75.1 bits (185), Expect = 2e-16
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 101 LHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGV 160
L ++G L + + L + + FV S I L + + G T +A G S PELFTS+I
Sbjct: 1 LLLIGYLILGLILLIYGADLFVKSSVRIARHLGISPLIIGVTVVAIGTSLPELFTSLIAS 60
Query: 161 FVSFDDVGI 169
+ D+G+
Sbjct: 61 LMGQPDIGV 69
Score = 34.2 bits (79), Expect = 0.025
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 91 MEQKRNGAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSA 150
E R + ++ ++ + L V V I + L + E + G T +A G S
Sbjct: 160 DENNRRPQIFFSLVLLIIGLIGLVVGS-RLLVDGAVKIAEILGISEKIIGLTLLAIGTSL 218
Query: 151 PELFTSVIGV 160
PEL S+
Sbjct: 219 PELVVSLAAA 228
>gnl|CDD|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein. This is a
family of sodium/calcium exchanger integral membrane
proteins. This family covers the integral membrane
regions of the proteins. Sodium/calcium exchangers
regulate intracellular Ca2+ concentrations in many
cells; cardiac myocytes, epithelial cells, neurons
retinal rod photoreceptors and smooth muscle cells. Ca2+
is moved into or out of the cytosol depending on Na+
concentration. In humans and rats there are 3 isoforms;
NCX1 NCX2 and NCX3.
Length = 135
Score = 60.3 bits (147), Expect = 4e-12
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 112 ALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAG 171
L ++ + V S + I + L + V G T +A G S PELF+S+I D+ +
Sbjct: 1 LLIILLADLLVDSAESIAEVLGISPTVIGLTLLALGTSLPELFSSIIAALKGNADLALGN 60
Query: 172 --GSAPELFTSVIGVFVSF 188
GS V+G+
Sbjct: 61 VIGSNLFNILLVLGLSALI 79
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 49.1 bits (118), Expect = 3e-07
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 98 AVILHILGVLYMFVALA--VVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFT 155
A+ + +L +L + L V + V + I R + E + G T +A G S PEL
Sbjct: 4 ALEMLLLLILLLIAGLILLVKGADLLVDAASAISRRFGISELIIGLTIVAFGTSLPELAV 63
Query: 156 SVIGVFVSFDDVGI 169
S++ D+ +
Sbjct: 64 SLVAALSGNPDIAV 77
Score = 36.8 bits (86), Expect = 0.004
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 86 PDPFTMEQKRNGAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMA 145
P E+ + G++ +L ++ + L V E V I + + E + G T +A
Sbjct: 160 PGEQENERPKKGSLRKALLVLVIGLILLVVGS-ELLVDGAVEIAEIFGISELIIGLTIVA 218
Query: 146 AGGSAPELFTSVIGVFVSFDDVGI 169
G S PEL S++ DD+ +
Sbjct: 219 IGTSLPELVVSIVAARKGEDDIAV 242
Score = 27.6 bits (62), Expect = 5.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 138 VAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAGGSAPELFTSVIGVFVSFDDVGI 193
V GA +A EL IG+ + V I G S PEL S++ DD+ +
Sbjct: 195 VDGAVEIAEIFGISELI---IGLTI----VAI-GTSLPELVVSIVAARKGEDDIAV 242
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 39.0 bits (91), Expect = 0.001
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 82 PLFPPDPFTMEQKRNGAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDR---------- 131
P++ P ++ K A + + ++YMF+ ++++ D F + S++VI +
Sbjct: 59 PIWEPQNPSVGDKIARATVYFVA-MVYMFLGVSIIADRF-MASIEVITSQEKEITIKKPN 116
Query: 132 -----LQVQ---EDVAGATFMAAGGSAPELFTSVIGV----FVSFDDVG---IAGGSAPE 176
V+ E V+ T MA G SAPE+ SVI V F + D+G I G +A
Sbjct: 117 GETTVTTVRIWNETVSNLTLMALGSSAPEILLSVIEVCGHNFEA-GDLGPSTIVGSAAFN 175
Query: 177 LFTSVIGVFV 186
+F +I + V
Sbjct: 176 MFI-IIAICV 184
>gnl|CDD|114474 pfam05750, Rubella_Capsid, Rubella capsid protein. Rubella virus
is an enveloped positive-strand RNA virus of the family
Togaviridae. Virions are composed of three structural
proteins: a capsid and two membrane-spanning
glycoproteins, E2 and E1. During virus assembly, the
capsid interacts with genomic RNA to form nucleocapsids.
It has been discovered that capsid phosphorylation
serves to negatively regulate binding of viral genomic
RNA. This may delay the initiation of nucleocapsid
assembly until sufficient amounts of virus glycoproteins
accumulate at the budding site and/or prevent
non-specific binding to cellular RNA when levels of
genomic RNA are low. It follows that at a late stage in
replication, the capsid may undergo dephosphorylation
before nucleocapsid assembly occurs.
Length = 300
Score = 35.6 bits (81), Expect = 0.009
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 30 NRSHGGEDSNRSHGGEDSNRSHVGEDSNRSWTSVPVWP----TSQTEKPHGEVKKDPLFP 85
+ S G+DS R GG R + G + W+ P P S+++ P + + P
Sbjct: 44 DSSTSGDDSGRDSGGPRRRRGNRGRGQRKDWSRAPPPPEERQESRSQTPAPKPSRAPPQQ 103
Query: 86 PDPFTMEQKRNGA 98
P P M+ R G+
Sbjct: 104 PQPPRMQTGRGGS 116
>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
Provisional.
Length = 325
Score = 35.0 bits (81), Expect = 0.015
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 87 DPFTMEQ----KRNG----AVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDV 138
D T EQ R G A + + ++ M +A +V D + V+ + + E
Sbjct: 156 DSLTREQLAELPREGGLPVAFLWLGIALIIMPMATRMVID-----NATVLANYFAISELT 210
Query: 139 AGATFMAAGGSAPELFTSVIGVFVSFDDVGI 169
G T +A G S PEL T++ G +D+ +
Sbjct: 211 IGLTVIAIGTSLPELATAIAGARKGENDIAV 241
>gnl|CDD|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional.
Length = 650
Score = 34.7 bits (80), Expect = 0.023
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 103 ILGV--LYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGV 160
+LGV + +F L ++F SL+ + L++ VAG T + G AP++F S I
Sbjct: 142 VLGVWLVALFYLLGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFAS-IAA 200
Query: 161 FVSFD--DVGIAGGSAPELFTSVIG--VFVSFDDVGIV 194
FV D +VG+ SV+G VFV+ VGIV
Sbjct: 201 FVGKDAGEVGL---------NSVLGGAVFVTCVVVGIV 229
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 33.4 bits (76), Expect = 0.072
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 29 SNRSHGGEDSNRSHGGEDSNRSHVGEDSNRSWTSVPVWPTSQTEKPHGEVKKDP------ 82
S++ HG + S+ SH G+ ++ S R + E+P + P
Sbjct: 148 SSQRHGQQGSSHSHSGDHHSKEICRSKSPRD--LEVNVQSP--ERPPDSLVLLPSSQHSV 203
Query: 83 -LFPPD----PFTMEQK 94
FPP M+QK
Sbjct: 204 QNFPPSLMSKSSAMQQK 220
>gnl|CDD|129926 TIGR00846, caca2, calcium/proton exchanger. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is generated from
the calcium ion/proton exchangers of the CacA family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 365
Score = 31.6 bits (72), Expect = 0.20
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 87 DPFTMEQKRNGAVILHILGVLYMFVALAVV--CDEFFVPSLDVIIDRLQVQEDVAGATFM 144
+ E VI ++ A VV E+ V +++ ++ + G
Sbjct: 204 SDYDDEVHEEPTVISPWSAAAWLVGATIVVALLAEYLVDTIESAVESWGLSVAFIGVILA 263
Query: 145 AAGGSAPELFTSVIGVFVSFDD--VGIAGGSAPE--LFTSVIGVFVSF 188
G+A E +VI F + D +G+A GSA + LF + V V++
Sbjct: 264 PIVGNAAEHAGAVIAAFKNKLDIALGVALGSALQIALFVVPVVVLVAW 311
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 31.0 bits (70), Expect = 0.34
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 90 TMEQKRNGAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGS 149
+ +L + VA C EF V ++D +++ + + G + G+
Sbjct: 196 NPHHSLSVKSSTVVLLGTTVIVA---FCSEFLVGTIDNVVESTGLSKLFIGVIVIPIVGN 252
Query: 150 APELFTSVIGVFVSFDD-----VGIAGGSAPE--LFTSVIGVFVSF 188
A E T+V+ V+ D +G+A GS+ + LF + + V V +
Sbjct: 253 AAEHATAVL---VAMKDKMDLALGVAIGSSLQIALFVAPVLVIVGW 295
>gnl|CDD|131852 TIGR02805, exbB2, tonB-system energizer ExbB, group 2. Members of
this protein family appear to be the ExbB protein of an
ExbBD proton-transporting membrane complex that, by
means of TonB, energizes transport by TonB-dependent
receptors. Note that this family represents one of at
least two distinct groups TolQ homologs designated ExbB
- see also TIGR02797. Each group associates with a
distinct group of ExbD proteins, and a single species
may have two ExbB/ExbD/TonB systems [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 138
Score = 29.0 bits (65), Expect = 0.93
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 99 VILHILGVLYMFVALAVVCDEF-FVPSLDVIIDRLQVQEDVAGA------TFMAAGGSAP 151
I ILG++ +ALA+V + + F+ + V + G +AP
Sbjct: 10 FIFGILGLM-SIIALAMVIERYLFLRKISV--AHYSTIHQLDIDLNRNLTVISIIGSNAP 66
Query: 152 E--LFTSVIGVFVSFDDVGIAGG 172
L +VIG+ V+F +G GG
Sbjct: 67 YIGLLGTVIGIMVTFYQMGHGGG 89
>gnl|CDD|223464 COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and
metabolism].
Length = 368
Score = 29.6 bits (67), Expect = 1.0
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 80 KDPLFPPDPFTMEQKRNGAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVA 139
+ D + +V+L GVL + L + E V SL+ +++ L
Sbjct: 200 AEGEAEEDDPHHDDPSKWSVLLST-GVLLIATVLVALLAEILVGSLEAVLESLGAPPAFV 258
Query: 140 GATFMAAGGSAPELFTSVIGVFVSFDD-----VGIAGGSA 174
G A G+APE T++ + ++ + IA GSA
Sbjct: 259 GLIIAALVGNAPEHLTALR---AALNNRMQLSMNIAMGSA 295
>gnl|CDD|216608 pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This
family groups together integral membrane proteins that
appear to be involved translocation of proteins across a
membrane. These proteins are probably proton channels.
MotA is an essential component of the flageller motor
that uses a proton gradient to generate rotational
motion in the flageller. ExbB is part of the
TonB-dependent transduction complex. The TonB complex
uses the proton gradient across the inner bacterial
membrane to transport large molecules across the outer
bacterial membrane.
Length = 139
Score = 28.0 bits (63), Expect = 1.9
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 139 AGATFMAAGGS-AP--ELFTSVIGVFVSFDDVGIAGGSAPE---------LFTSVIGVFV 186
G T +A GS AP L +V G+ +F +G G + P L + +G+FV
Sbjct: 53 RGLTILATIGSVAPFLGLLGTVWGIIHAFIHIGQTGQADPAVVAPGISEALVATALGLFV 112
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 28.8 bits (65), Expect = 1.9
Identities = 5/53 (9%), Positives = 15/53 (28%)
Query: 14 PTLFYHFFHYDEGEDSNRSHGGEDSNRSHGGEDSNRSHVGEDSNRSWTSVPVW 66
P + Y++ + + + G + ++ TS+
Sbjct: 88 PHFLSGPYSYEQTNLTGSNESSNSTLCHGGALIPSPCQSEGSCHKESTSLMWL 140
>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
Provisional.
Length = 683
Score = 28.7 bits (64), Expect = 2.5
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 102 HILGVLYMFVALAVVCDEFFVPSLDV--IIDRLQVQEDVAGATFMAAGGSAPELFTSVIG 159
H LG+++ VA+ + + F LD ++ RL + V G P L ++IG
Sbjct: 123 HRLGLVFFAVAIVAIYGQTFPAMLDYPEVVVRLTLWCIVVGLY--------PTLLMTLIG 174
Query: 160 V 160
V
Sbjct: 175 V 175
>gnl|CDD|225698 COG3156, PulK, Type II secretory pathway, component PulK
[Intracellular trafficking and secretion].
Length = 323
Score = 28.2 bits (63), Expect = 2.6
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 91 MEQKRNGAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSA 150
M +++ GA ++ +L + VAL V V I R Q+ + A + A GG
Sbjct: 1 MRREQRGAALITVL----LLVALMAVIAAGLADRQFVEIRRAANQQLRSQAQWYALGGE- 55
Query: 151 PELFTSVI 158
EL SV+
Sbjct: 56 -ELARSVL 62
>gnl|CDD|217008 pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification
(R-M) systems protect a bacterial cell against invasion
of foreign DNA by endonucleolytic cleavage of DNA that
lacks a site specific modification. The R-M system is a
complex containing three polypeptides: M (this family),
S (pfam01420), and R. This family consists of N-6
adenine-specific DNA methylase EC:2.1.1.72 from Type I
and Type IC restriction systems. These methylases have
the same sequence specificity as their corresponding
restriction enzymes.
Length = 312
Score = 27.6 bits (62), Expect = 3.7
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 67 PTSQTEKPHGEVKKDPLFPPDPFTMEQKRNGAVILHILGVLYMFVALAVVCD 118
P +Q + ++ DP F + + A + HI+ L AVV
Sbjct: 134 PFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVVLP 185
>gnl|CDD|211380 cd10981, ZnPC_S1P1, Zinc dependent phospholipase C/S1-P1
nuclease. This model describes both the bacterial and
archeal zinc-dependent phospholipase C, a domain found
in the alpha toxin of Clostridium perfringens, as well
as S1/P1 nucleases, which predominantly act on
single-stranded DNA and RNA.
Length = 238
Score = 27.0 bits (60), Expect = 6.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 19 HFFHYDEGEDSNRSHGGEDSNRSHGG 44
H D+ DS GED+ GG
Sbjct: 56 HVLDVDDYGDSALDKYGEDTLGYWGG 81
>gnl|CDD|224948 COG2037, Ftr, Formylmethanofuran:tetrahydromethanopterin
formyltransferase [Energy production and conversion].
Length = 297
Score = 27.0 bits (60), Expect = 6.2
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 127 VIIDRLQVQEDVAGATF----------MAAGGSAPELFTSVIGVFVSFDDVGIAGGSAPE 176
+I R+ E +AG F + A +A + V GV F +A GS
Sbjct: 150 IIERRIGYAEGIAGGNFWIMCESQDSALEAAEAAVDAIEEVEGVITPFPGGIVASGSKVG 209
>gnl|CDD|102036 PRK05874, PRK05874, L-fuculose-phosphate aldolase; Validated.
Length = 217
Score = 26.9 bits (59), Expect = 7.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 126 DVIIDRLQVQEDVAGATFMAAGGSAPELFTSV-IGVFVSFDDVGIAGGSAP 175
++++ L V D GA A G +P ++ + + +FDD+G S P
Sbjct: 51 EMLLHDL-VLVDAGGAVLHAKDGRSPSTELNLHLACYRAFDDIGSVIHSHP 100
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 26.9 bits (60), Expect = 9.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 108 YMFVALAVVCDE-FFVPSLDV--IIDRLQVQEDVAGATFMAAGGS--APELFTSVIGVF 161
Y +A+ VV ++ + + + IID V E+ A + G P+LF SV+ +
Sbjct: 225 YDLLAVPVVDEDNRLIGIITIDDIID---VIEEEATEDILRMAGPLDVPDLFASVLKLV 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.422
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,461,383
Number of extensions: 981873
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 788
Number of HSP's successfully gapped: 39
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)