RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2839
         (196 letters)



>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
           protein complex, sodium,calcium EX membrane protein;
           HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
           PDB: 3v5s_A*
          Length = 320

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 99  VILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVI 158
           VIL +   L   + L     ++FV   + I     V   V GAT MA G S PE+ TS  
Sbjct: 2   VILGVGYFLLGLILL-YYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAY 60

Query: 159 GVFVSFDDVGI 169
             ++    + I
Sbjct: 61  ASYMHAPGISI 71



 Score = 34.1 bits (79), Expect = 0.018
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 106 VLYMFVALA--VVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVF 161
           ++ + + L   +V  E FV     I   L + + V G T +A G S PEL  S+    
Sbjct: 165 LVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAK 222



 Score = 29.1 bits (66), Expect = 0.79
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 10/49 (20%)

Query: 138 VAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAGG-SAPELFTSVIGVF 185
           V GA  +A      +    VIG  +      +A G S PEL  S+    
Sbjct: 183 VDGAKKIALALDISDK---VIGFTL------VAFGTSLPELMVSLAAAK 222



 Score = 28.7 bits (65), Expect = 1.2
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 138 VAGATFMAAGGSAPELFTSVIG-VFVSFDDVGIAGGSAPELFTSVIGVFVSFDDVGI 193
           V G+  +A   +       VIG   ++       G S PE+ TS    ++    + I
Sbjct: 24  VLGSERIARHFNVSNF---VIGATVMAI------GTSLPEILTSAYASYMHAPGISI 71


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.025
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 14/104 (13%)

Query: 97  GAVILHILGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTS 156
           G +I      L   +   +  ++ F   L+ I++ L+   +     ++    S P    S
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLL---SIP---IS 237

Query: 157 V--IGV--FVSFDDVGIAGGSAP-ELFTSVIGVFVSFDDVGIVV 195
              IGV     +       G  P EL + + G        G+V 
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ--GLVT 279



 Score = 29.2 bits (65), Expect = 1.0
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 21/90 (23%)

Query: 85  PPDPFTMEQKRNGAVILHILGVLYMFVALAVVCDEF-FVPSLDVIIDRLQ----VQEDVA 139
           P   +      +  +   ++G +       V      F P    +   L+      + + 
Sbjct: 226 PDKDYL----LSIPISCPLIG-VIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLV 278

Query: 140 GATFMAAGGSAPELFTSV---------IGV 160
            A  +A   S    F SV         IGV
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGV 308


>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
           translocator, mitochondrial carrier transport protein,
           structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 26.5 bits (59), Expect = 5.7
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 104 LGVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVFVS 163
           + V ++    A    +     LD    RLQ+Q    G +      +A   +  V+G  ++
Sbjct: 1   MTVKFLGAGTAACIADLITFPLDTAKVRLQIQ----GESQGLVRTAASAQYRGVLGTILT 56


>3owa_A Acyl-COA dehydrogenase; structural genomics, center for
          structural genomics of infec diseases, csgid,
          alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A
          {Bacillus anthracis}
          Length = 597

 Score = 26.5 bits (59), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 76 GEVKKDPLFPPDPFTMEQK 94
           E+  D +F P+ F+ E K
Sbjct: 20 DEITIDQVFTPEDFSSEHK 38


>3nx2_A Ferulic acid decarboxylase; 4-vinylguaiacol, catalytic MECH
          phenolic acid decarboxylase superfamily, lyase; HET:
          FER; 2.01A {Enterobacter SP} PDB: 3nx1_A*
          Length = 168

 Score = 25.7 bits (56), Expect = 9.1
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 10 YTYVPTLFYHFFHYDEGEDSNRSHGGEDSNRSHGGEDSNRSHVGEDSNR-SWT 61
          YTY     Y  +  ++     R H G   NR    +++    VGE   + SWT
Sbjct: 19 YTYDNGWNYEIYVKNDNTIDYRIHSGLVGNRWVKDQEAYIVRVGESIYKISWT 71


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,155,908
Number of extensions: 189381
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 11
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)