RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2839
         (196 letters)



>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic
           subunit {Thale cress (Arabidopsis thaliana), chloroplast
           [TaxId: 3702]}
          Length = 195

 Score = 25.5 bits (55), Expect = 3.8
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 89  FTMEQKRNGA-VILHIL---GVLYMFVALAVVCDEFFVPSLDVIIDRLQVQEDVAGATFM 144
           F  +Q R GA +++  L   GV  +F        E           R  +     G  F 
Sbjct: 6   FAPDQPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFA 65

Query: 145 AAG 147
           A G
Sbjct: 66  AEG 68


>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 25.1 bits (53), Expect = 6.9
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 104 LGVLYMFVA--LAVVCDEFFVPSLDVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVF 161
           L  L  F+A  +A    +  V  ++ +   LQVQ         +   SA + +  +I   
Sbjct: 4   LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH-------ASKQISAEKQYKGIIDCV 56

Query: 162 VS 163
           V 
Sbjct: 57  VR 58


>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
           ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 264

 Score = 24.5 bits (53), Expect = 9.7
 Identities = 10/53 (18%), Positives = 18/53 (33%)

Query: 126 DVIIDRLQVQEDVAGATFMAAGGSAPELFTSVIGVFVSFDDVGIAGGSAPELF 178
           D + D  +      G   +        +  ++ G FV+  +   A  SA   F
Sbjct: 169 DYVSDGRRTFAVYNGHELLGRVTGTGCMVAALTGAFVAVTEPLKATTSALVTF 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 759,252
Number of extensions: 33791
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 4
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.6 bits)