BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy284
(139 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|91080717|ref|XP_975367.1| PREDICTED: similar to beadex/dLMO protein [Tribolium castaneum]
gi|270005467|gb|EFA01915.1| hypothetical protein TcasGA2_TC007525 [Tribolium castaneum]
Length = 241
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 113/125 (90%), Gaps = 5/125 (4%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + A+ P++ QGPQECAGC K IT+R+LLKALD+YWHEDCLKCGCCDCR
Sbjct: 15 MTMDVSKGEAAK-----PSSGQGPQECAGCCKTITERYLLKALDLYWHEDCLKCGCCDCR 69
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILCKRDYLRLFG+TGYCAACSKVIPAFEMVMRAR+NVYHLECFACQ
Sbjct: 70 LGEVGSTLYTKANLILCKRDYLRLFGNTGYCAACSKVIPAFEMVMRARSNVYHLECFACQ 129
Query: 135 QCNHR 139
QCNHR
Sbjct: 130 QCNHR 134
>gi|242005244|ref|XP_002423481.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212506569|gb|EEB10743.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 284
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/111 (85%), Positives = 107/111 (96%), Gaps = 2/111 (1%)
Query: 29 KAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANL 88
+A+P + GP+ECAGCGK IT+RFLLKA+D++WHEDCLKCGCCDCRLGEVGSTLYTKANL
Sbjct: 39 QALP--SSGPRECAGCGKRITERFLLKAIDLFWHEDCLKCGCCDCRLGEVGSTLYTKANL 96
Query: 89 ILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
ILCKRDYLRLFG+TGYCAAC+KVIPAFEMVMRA++NVYHLECFACQQCNHR
Sbjct: 97 ILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKSNVYHLECFACQQCNHR 147
>gi|270005132|gb|EFA01580.1| hypothetical protein TcasGA2_TC007141 [Tribolium castaneum]
Length = 254
Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 108/125 (86%), Gaps = 6/125 (4%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
+ + V T + T A G +ECAGCGK IT+RFLLKALD+YWHEDCLKCGCCDCR
Sbjct: 28 VPVSVSTAANSTATGA------GVRECAGCGKRITERFLLKALDLYWHEDCLKCGCCDCR 81
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILCKRDYLRLFG+TGYCAAC+KVIPAFEMVMRA++NVYHLECFACQ
Sbjct: 82 LGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAFEMVMRAKSNVYHLECFACQ 141
Query: 135 QCNHR 139
QCNHR
Sbjct: 142 QCNHR 146
>gi|322796207|gb|EFZ18783.1| hypothetical protein SINV_11229 [Solenopsis invicta]
Length = 127
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/131 (77%), Positives = 111/131 (84%), Gaps = 9/131 (6%)
Query: 10 LKINRMSMDVKTQQGAQQTKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKC 68
L ++M+MD +K+ P N QECAGCGK IT+R+LLKALDMYWHEDCLKC
Sbjct: 5 LAGDKMTMD--------GSKSEPGKNGATQQECAGCGKAITERYLLKALDMYWHEDCLKC 56
Query: 69 GCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
GCCDCRLGEVGSTLYTKANLILCKRDYLRLFG+TG+CAACSKVIPAFEMVMRAR NVYHL
Sbjct: 57 GCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHL 116
Query: 129 ECFACQQCNHR 139
ECFACQQCNHR
Sbjct: 117 ECFACQQCNHR 127
>gi|157116702|ref|XP_001652842.1| rhombotin [Aedes aegypti]
gi|108876328|gb|EAT40553.1| AAEL007719-PA [Aedes aegypti]
Length = 218
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 92/101 (91%), Positives = 100/101 (99%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
++CAGCGK IT+RFLLKALD++WHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL
Sbjct: 65 KDCAGCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 124
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TGYCAAC+KVIPAFEMVMRA+NNVYHLECFACQQCNHR
Sbjct: 125 FGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNHR 165
>gi|307206044|gb|EFN84137.1| Rhombotin-1 [Harpegnathos saltator]
Length = 118
Score = 206 bits (523), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/113 (86%), Positives = 104/113 (92%), Gaps = 1/113 (0%)
Query: 28 TKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
+K+ P N QECAGCGK IT+R+LLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA
Sbjct: 6 SKSEPGKNGATQQECAGCGKAITERYLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 65
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
NLILCKRDYLRLFG+TG+CAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 66 NLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 118
>gi|307170935|gb|EFN63035.1| Rhombotin-1 [Camponotus floridanus]
Length = 118
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 106/125 (84%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MD + + N QECAGCGK IT+R+LLKALDMYWHEDCLKCGCCDCR
Sbjct: 1 MTMDGSKSESGK-------NGATQQECAGCGKAITERYLLKALDMYWHEDCLKCGCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILCKRDYLRLFG+TG+CAACSKVIPAFEMVMRAR NVYHLECFACQ
Sbjct: 54 LGEVGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQ 113
Query: 135 QCNHR 139
QCNHR
Sbjct: 114 QCNHR 118
>gi|357622819|gb|EHJ74198.1| beadex/dLMO protein [Danaus plexippus]
Length = 359
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 106/128 (82%), Gaps = 4/128 (3%)
Query: 15 MSMDVKTQQGAQ---QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
++MDV + A T P Q PQ CAGC K IT+R+LLKALD WHEDCLKCGCC
Sbjct: 139 LAMDVTKEARASPLPSTTGAPAQPQ-PQICAGCSKVITERYLLKALDQLWHEDCLKCGCC 197
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
DCRLGEVG TLYT+ANLILCKRDYLRLFG+TGYCAAC+KVIPAFEMVMRAR+NVYHLECF
Sbjct: 198 DCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECF 257
Query: 132 ACQQCNHR 139
ACQQCNHR
Sbjct: 258 ACQQCNHR 265
>gi|158289946|ref|XP_311556.4| AGAP010391-PA [Anopheles gambiae str. PEST]
gi|157018403|gb|EAA07238.4| AGAP010391-PA [Anopheles gambiae str. PEST]
Length = 204
Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/101 (91%), Positives = 100/101 (99%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
++CAGCGK IT+RFLLKALD++WHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL
Sbjct: 51 KDCAGCGKRITERFLLKALDIFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 110
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TGYCAAC+KVIPAFEMVMRA+NNVYHLECFACQQCNHR
Sbjct: 111 FGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNHR 151
>gi|198467349|ref|XP_002134510.1| GA22333 [Drosophila pseudoobscura pseudoobscura]
gi|198149202|gb|EDY73137.1| GA22333 [Drosophila pseudoobscura pseudoobscura]
Length = 407
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 182 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 241
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 242 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 284
>gi|189236731|ref|XP_974987.2| PREDICTED: similar to AGAP010391-PA [Tribolium castaneum]
Length = 231
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/101 (92%), Positives = 100/101 (99%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ECAGCGK IT+RFLLKALD+YWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL
Sbjct: 18 RECAGCGKRITERFLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 77
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TGYCAAC+KVIPAFEMVMRA++NVYHLECFACQQCNHR
Sbjct: 78 FGTTGYCAACNKVIPAFEMVMRAKSNVYHLECFACQQCNHR 118
>gi|195039941|ref|XP_001990976.1| GH12432 [Drosophila grimshawi]
gi|193900734|gb|EDV99600.1| GH12432 [Drosophila grimshawi]
Length = 447
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 215 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 274
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 275 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 317
>gi|332024562|gb|EGI64760.1| Rhombotin-1 [Acromyrmex echinatior]
Length = 124
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/113 (85%), Positives = 104/113 (92%), Gaps = 1/113 (0%)
Query: 28 TKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
+K+ P N QECAGCGK IT+R+LLKALDM+WHEDCLKCGCCDCRLGEVGSTLYTKA
Sbjct: 6 SKSEPGKNGATQQECAGCGKAITERYLLKALDMFWHEDCLKCGCCDCRLGEVGSTLYTKA 65
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
NLILCKRDYLRLFG+TG+CAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 66 NLILCKRDYLRLFGNTGHCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 118
>gi|194892543|ref|XP_001977682.1| GG19173 [Drosophila erecta]
gi|190649331|gb|EDV46609.1| GG19173 [Drosophila erecta]
Length = 419
Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 158 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 217
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 218 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 260
>gi|170031972|ref|XP_001843857.1| rhombotin [Culex quinquefasciatus]
gi|167871437|gb|EDS34820.1| rhombotin [Culex quinquefasciatus]
Length = 255
Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 92/101 (91%), Positives = 100/101 (99%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
++CAGCGK IT+RFLLKALD++WHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL
Sbjct: 80 KDCAGCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 139
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TGYCAAC+KVIPAFEMVMRA+NNVYHLECFACQQCNHR
Sbjct: 140 FGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNHR 180
>gi|28571257|ref|NP_523402.4| beadex, isoform B [Drosophila melanogaster]
gi|22832512|gb|AAN09472.1| beadex, isoform B [Drosophila melanogaster]
gi|28557589|gb|AAO45200.1| RE72043p [Drosophila melanogaster]
gi|220949014|gb|ACL87050.1| Bx-PA [synthetic construct]
gi|220958192|gb|ACL91639.1| Bx-PA [synthetic construct]
Length = 384
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 159 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 218
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 219 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 261
>gi|195481388|ref|XP_002101630.1| GE17735 [Drosophila yakuba]
gi|194189154|gb|EDX02738.1| GE17735 [Drosophila yakuba]
Length = 370
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 145 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 204
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 205 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 247
>gi|195456746|ref|XP_002075269.1| GK17103 [Drosophila willistoni]
gi|194171354|gb|EDW86255.1| GK17103 [Drosophila willistoni]
Length = 460
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 121 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 180
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 181 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 223
>gi|195345489|ref|XP_002039301.1| GM22905 [Drosophila sechellia]
gi|194134527|gb|EDW56043.1| GM22905 [Drosophila sechellia]
Length = 382
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 157 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 216
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 217 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 259
>gi|195567549|ref|XP_002107322.1| GD17400 [Drosophila simulans]
gi|194204728|gb|EDX18304.1| GD17400 [Drosophila simulans]
Length = 371
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 146 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 205
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 206 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 248
>gi|114052529|ref|NP_001040254.1| beadex/dLMO protein [Bombyx mori]
gi|87248525|gb|ABD36315.1| beadex/dLMO protein [Bombyx mori]
Length = 267
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/138 (71%), Positives = 108/138 (78%), Gaps = 2/138 (1%)
Query: 2 SNEIGLEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYW 61
S + ++ K R S T Q T A N PQ CAGC K IT+R+LLKALD W
Sbjct: 19 SQMLAMDVTKEARSSPLPATSQATTVTSA--QNPPQPQICAGCSKVITERYLLKALDQLW 76
Query: 62 HEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRA 121
HEDCLKCGCCDCRLGEVG TLYT+ANLILCKRDYLRLFG+TGYCAAC+KVIPAFEMVMRA
Sbjct: 77 HEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAFEMVMRA 136
Query: 122 RNNVYHLECFACQQCNHR 139
R+NVYHLECFACQQCNHR
Sbjct: 137 RSNVYHLECFACQQCNHR 154
>gi|194766824|ref|XP_001965524.1| GF22537 [Drosophila ananassae]
gi|190619515|gb|EDV35039.1| GF22537 [Drosophila ananassae]
Length = 408
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 179 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 238
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 239 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 281
>gi|442616864|ref|NP_001259687.1| beadex, isoform D [Drosophila melanogaster]
gi|440216921|gb|AGB95529.1| beadex, isoform D [Drosophila melanogaster]
Length = 424
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 88 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 147
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 148 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 190
>gi|24643072|ref|NP_728184.1| beadex, isoform A [Drosophila melanogaster]
gi|28571259|ref|NP_788931.1| beadex, isoform C [Drosophila melanogaster]
gi|3445443|emb|CAA09104.1| beadex/dLMO protein [Drosophila melanogaster]
gi|7293486|gb|AAF48861.1| beadex, isoform A [Drosophila melanogaster]
gi|16768462|gb|AAL28450.1| GM05069p [Drosophila melanogaster]
gi|28381650|gb|AAO41709.1| beadex, isoform C [Drosophila melanogaster]
gi|220942446|gb|ACL83766.1| Bx-PA [synthetic construct]
gi|220952666|gb|ACL88876.1| Bx-PA [synthetic construct]
Length = 313
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 88 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 147
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 148 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 190
>gi|328712778|ref|XP_001945042.2| PREDICTED: hypothetical protein LOC100161710 [Acyrthosiphon pisum]
Length = 388
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 91/101 (90%), Positives = 98/101 (97%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ECA CGK IT+RFLLKALD++WHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL
Sbjct: 57 RECANCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 116
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TG CAAC+KVIPAFEMVMRA+NNVYHLECFACQQCNHR
Sbjct: 117 FGATGNCAACNKVIPAFEMVMRAKNNVYHLECFACQQCNHR 157
>gi|442616866|ref|NP_001259688.1| beadex, isoform E [Drosophila melanogaster]
gi|440216922|gb|AGB95530.1| beadex, isoform E [Drosophila melanogaster]
Length = 327
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 102 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 161
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 162 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 204
>gi|193634208|ref|XP_001949623.1| PREDICTED: LIM domain only protein 3-like [Acyrthosiphon pisum]
Length = 250
Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 108/131 (82%), Gaps = 6/131 (4%)
Query: 15 MSMDVKTQQGAQQT--KAVPN----NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKC 68
M+MDVK Q A T K+ N + G QECAGCGKHITDRFLLKALD++WHEDCL C
Sbjct: 1 MTMDVKASQVAASTATKSSANVGASASTGGQECAGCGKHITDRFLLKALDLFWHEDCLMC 60
Query: 69 GCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
GCC CRLGEVGSTLYTKAN+ILCK+DY R+FG+ G CAAC K IPAFEMVMRAR+NVYHL
Sbjct: 61 GCCGCRLGEVGSTLYTKANMILCKKDYFRMFGNKGMCAACFKDIPAFEMVMRARSNVYHL 120
Query: 129 ECFACQQCNHR 139
ECFACQQCNHR
Sbjct: 121 ECFACQQCNHR 131
>gi|2133743|pir||S61522 LMO protein - fruit fly (Drosophila sp.)
gi|1854501|emb|CAA58141.1| dttg [Drosophila sp.]
Length = 266
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 41 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 100
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 101 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHR 143
>gi|347964385|ref|XP_311266.4| AGAP000731-PA [Anopheles gambiae str. PEST]
gi|333467506|gb|EAA06846.4| AGAP000731-PA [Anopheles gambiae str. PEST]
Length = 420
Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/101 (90%), Positives = 97/101 (96%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q CAGCGKHI DRFLL+ALD+ WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYLRL
Sbjct: 147 QLCAGCGKHIQDRFLLRALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRL 206
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TG+CAAC+KVIPAFEMVMRARNNVYHLECFACQQCNHR
Sbjct: 207 FGNTGFCAACNKVIPAFEMVMRARNNVYHLECFACQQCNHR 247
>gi|195130787|ref|XP_002009832.1| GI15025 [Drosophila mojavensis]
gi|193908282|gb|EDW07149.1| GI15025 [Drosophila mojavensis]
Length = 667
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 92/102 (90%), Positives = 96/102 (94%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G Q CAGCGKHI DR+LL+ALDM WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYL
Sbjct: 165 GSQLCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYL 224
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
RLFG+TGYCAACSKVIPAFEMVMRAR NVYHLECFACQQCNH
Sbjct: 225 RLFGNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNH 266
>gi|307206046|gb|EFN84139.1| Rhombotin-1 [Harpegnathos saltator]
Length = 249
Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/125 (76%), Positives = 104/125 (83%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + + N QECAGCGK IT+R+LLKALD+YWHEDCLKCGCCDCR
Sbjct: 1 MTMDVSKSETNK-------NGSTQQECAGCGKTITERYLLKALDLYWHEDCLKCGCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILCKRDYLRLFG+TG CAAC+K IPAFEMVMRAR NVYHL+CFACQ
Sbjct: 54 LGEVGSTLYTKANLILCKRDYLRLFGNTGCCAACNKPIPAFEMVMRARTNVYHLDCFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCTHR 118
>gi|170062853|ref|XP_001866850.1| beadex [Culex quinquefasciatus]
gi|167880615|gb|EDS43998.1| beadex [Culex quinquefasciatus]
Length = 278
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 89/99 (89%), Positives = 95/99 (95%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC KHI DRFLL+ALD+ WHEDCLKCGCCDCRLGEVGSTLYTK NL+LCKRDYLRLFG
Sbjct: 58 CAGCKKHIQDRFLLRALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFG 117
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TG+CAAC+KVIPAFEMVMRARNNVYHLECFACQQCNHR
Sbjct: 118 NTGFCAACNKVIPAFEMVMRARNNVYHLECFACQQCNHR 156
>gi|383853636|ref|XP_003702328.1| PREDICTED: LIM domain only protein 3-like [Megachile rotundata]
Length = 249
Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/125 (74%), Positives = 105/125 (84%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N QECAGCGK IT+R+LLKALD+YWHEDCLKCGCC+CR
Sbjct: 1 MTMDVSKSEPSK-------NGTTQQECAGCGKTITERYLLKALDLYWHEDCLKCGCCECR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILCKRDYLRLFG+TG CAAC+K IPAFEMVM+AR NVYHL+CFACQ
Sbjct: 54 LGEVGSTLYTKANLILCKRDYLRLFGNTGNCAACNKHIPAFEMVMKARTNVYHLDCFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCTHR 118
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C KHI ++KA +H DC C C R VG Y N ILC+ DY
Sbjct: 84 CAACNKHIPAFEMVMKARTNVYHLDCFACQQCTHRFC-VGDRFYLCENKILCEYDY 138
>gi|242020909|ref|XP_002430893.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212516104|gb|EEB18155.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 224
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%), Gaps = 4/127 (3%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECA--GCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
M++D+K++ Q+ A +CA GCGK ITDRF LKA +++WHEDCLKCGCCD
Sbjct: 1 MTLDIKSE--GQKNGAANGGTASANDCACAGCGKKITDRFFLKACELFWHEDCLKCGCCD 58
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFA 132
CRLGEVGSTLYTKANLILCKRDYLRLFG+TGYC+AC+KVIPAFEMVMRA++NVYHLECFA
Sbjct: 59 CRLGEVGSTLYTKANLILCKRDYLRLFGNTGYCSACNKVIPAFEMVMRAKHNVYHLECFA 118
Query: 133 CQQCNHR 139
CQQCNHR
Sbjct: 119 CQQCNHR 125
>gi|291230776|ref|XP_002735341.1| PREDICTED: LIM domain only 1-like [Saccoglossus kowalevskii]
Length = 311
Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 87/101 (86%), Positives = 94/101 (93%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGC K I DR+LLKAL+ YWHEDCLKC CCDCRLGEVGSTLY KANL+LCKRDYLRL
Sbjct: 47 RNCAGCKKKIKDRYLLKALEQYWHEDCLKCACCDCRLGEVGSTLYIKANLMLCKRDYLRL 106
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+TGYCAAC+KVIPAFEMVMRAR+NVYHLECFACQQCNHR
Sbjct: 107 FGTTGYCAACAKVIPAFEMVMRARDNVYHLECFACQQCNHR 147
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H +C C C+ R VG Y + N ILC+ DY
Sbjct: 113 CAACAKVIPAFEMVMRARDNVYHLECFACQQCNHRFC-VGDKFYLRNNKILCEEDY 167
>gi|321468800|gb|EFX79783.1| hypothetical protein DAPPUDRAFT_51838 [Daphnia pulex]
Length = 161
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/103 (83%), Positives = 95/103 (92%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
PQEC GCGK ITDR+LL+ALD+YWHEDCLKCGCCDCRL E GSTLYT+ANL+LC+RDYL
Sbjct: 14 APQECGGCGKFITDRYLLQALDLYWHEDCLKCGCCDCRLSENGSTLYTRANLVLCRRDYL 73
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TGYCAAC KVIPAFEMVM+A+ NVYHLECFACQ CNHR
Sbjct: 74 RLFGTTGYCAACGKVIPAFEMVMKAKGNVYHLECFACQNCNHR 116
>gi|443725165|gb|ELU12846.1| hypothetical protein CAPTEDRAFT_167130 [Capitella teleta]
Length = 173
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/117 (76%), Positives = 100/117 (85%)
Query: 23 QGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTL 82
Q +Q+ A QECAGC K ITDR+LLKAL+ +WHEDCLKC CCDCRLGEVGSTL
Sbjct: 2 QISQEPSASIGGDGERQECAGCKKKITDRYLLKALEQFWHEDCLKCSCCDCRLGEVGSTL 61
Query: 83 YTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TKANL+LC+RDYLRLFGSTGYC+ACSK+IPAFEMVMR + NVYHLECFACQQCNHR
Sbjct: 62 FTKANLLLCRRDYLRLFGSTGYCSACSKMIPAFEMVMRVKGNVYHLECFACQQCNHR 118
>gi|307170933|gb|EFN63033.1| Rhombotin-1 [Camponotus floridanus]
Length = 248
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 101/125 (80%), Gaps = 8/125 (6%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV +K+ N Q CAGC K IT+R+LLKALD YWHEDCLKC CCDCR
Sbjct: 1 MTMDV--------SKSENKNGSTQQVCAGCAKAITERYLLKALDSYWHEDCLKCSCCDCR 52
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILCKRDYLRLFGSTG CAAC+K IPAFEMVMRAR NVYHL+CFACQ
Sbjct: 53 LGEVGSTLYTKANLILCKRDYLRLFGSTGCCAACNKQIPAFEMVMRARTNVYHLDCFACQ 112
Query: 135 QCNHR 139
QC HR
Sbjct: 113 QCTHR 117
>gi|312379336|gb|EFR25645.1| hypothetical protein AND_08835 [Anopheles darlingi]
Length = 233
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/97 (87%), Positives = 94/97 (96%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
++CAGCGK IT+RFLLKALD++WHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL
Sbjct: 124 KDCAGCGKRITERFLLKALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 183
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
FG+TGYCAAC+KVIPAFEMVMRA+NNVYHLECFA +
Sbjct: 184 FGTTGYCAACNKVIPAFEMVMRAKNNVYHLECFASRN 220
>gi|391348067|ref|XP_003748273.1| PREDICTED: insulin gene enhancer protein isl-1-like [Metaseiulus
occidentalis]
Length = 365
Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 92/127 (72%), Positives = 100/127 (78%), Gaps = 2/127 (1%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
N + M+ T AQ +V N AQ ECAGC K I +R+LL+ALD WHEDCLKC CCD
Sbjct: 74 NSVLMNSNTDGVAQAASSVQNGAQ--PECAGCQKPIRERYLLRALDQLWHEDCLKCACCD 131
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFA 132
CRLGEVGSTL+ KANLILCKRDYLRLFG TG C+AC K IPAFEMVMRAR NVYHLECFA
Sbjct: 132 CRLGEVGSTLFHKANLILCKRDYLRLFGVTGLCSACHKQIPAFEMVMRARGNVYHLECFA 191
Query: 133 CQQCNHR 139
CQQCNHR
Sbjct: 192 CQQCNHR 198
>gi|340710497|ref|XP_003393824.1| PREDICTED: LIM domain only protein 3-like [Bombus terrestris]
Length = 249
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 104/125 (83%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N ECAGCGK IT+R+LLKA+D++WHEDCLKCGCCDCR
Sbjct: 1 MTMDVSKSEPSK-------NGATQHECAGCGKAITERYLLKAMDLFWHEDCLKCGCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGS+L+T+ANLILCKRDYLRLFG+ G+CAAC+K IP FEMVM+AR+NVYHL+CFACQ
Sbjct: 54 LGEVGSSLFTRANLILCKRDYLRLFGNPGHCAACNKQIPPFEMVMKARSNVYHLDCFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCTHR 118
>gi|110751065|ref|XP_001120755.1| PREDICTED: LIM domain only protein 3-like [Apis mellifera]
Length = 249
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 103/125 (82%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N ECAGCGK IT+R+LLKA+D++WHEDCLKCGCCDCR
Sbjct: 1 MTMDVSKSEPSK-------NGATQHECAGCGKPITERYLLKAMDLFWHEDCLKCGCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGS+L+T+ANLILCKRDYLRLFG+ G+CAAC+K IP FEMVM+AR NVYHL+CFACQ
Sbjct: 54 LGEVGSSLFTRANLILCKRDYLRLFGNPGHCAACNKQIPPFEMVMKARTNVYHLDCFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCTHR 118
>gi|345487674|ref|XP_001605275.2| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Nasonia
vitripennis]
gi|345487676|ref|XP_003425736.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Nasonia
vitripennis]
Length = 281
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 101/125 (80%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N QEC GC K I +R+LLKALD YWHEDCLKC CCDCR
Sbjct: 1 MTMDVSKSETSK-------NGSTQQECRGCSKTIKERYLLKALDAYWHEDCLKCNCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTLYTKANLILC+RDYLRLFG+TG+C+AC+K IPAFEMVMRA+ NVYHLECFACQ
Sbjct: 54 LGEVGSTLYTKANLILCRRDYLRLFGNTGHCSACNKPIPAFEMVMRAKTNVYHLECFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCYHR 118
>gi|350427422|ref|XP_003494753.1| PREDICTED: LIM domain only protein 3-like [Bombus impatiens]
Length = 249
Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/125 (68%), Positives = 103/125 (82%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N ECAGCGK IT+R+LLKA+D++WHEDCLKCGCCDCR
Sbjct: 1 MTMDVSKSEPSK-------NGATQHECAGCGKAITERYLLKAMDLFWHEDCLKCGCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGS+L+T+ANLILCKRDYLRLFG G+CAAC+K IP FEMVM+AR+NVYHL+CFACQ
Sbjct: 54 LGEVGSSLFTRANLILCKRDYLRLFGIPGHCAACNKQIPPFEMVMKARSNVYHLDCFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCTHR 118
>gi|383853634|ref|XP_003702327.1| PREDICTED: rhombotin-1-like [Megachile rotundata]
Length = 222
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/125 (70%), Positives = 102/125 (81%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N QECAGCGK IT+R+LLKALDM WHEDCLKC CCDC+
Sbjct: 1 MTMDVSKSEPSK-------NGTVQQECAGCGKVITERYLLKALDMLWHEDCLKCSCCDCK 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
L +VGSTLYTK+N ILCK+DYLR+FGS+G+CA C+K IPAFEMVMRAR NVYHLECFACQ
Sbjct: 54 LVDVGSTLYTKSNFILCKKDYLRMFGSSGHCAVCNKSIPAFEMVMRARTNVYHLECFACQ 113
Query: 135 QCNHR 139
QCNHR
Sbjct: 114 QCNHR 118
>gi|241738278|ref|XP_002414049.1| rhombotin, putative [Ixodes scapularis]
gi|215507903|gb|EEC17357.1| rhombotin, putative [Ixodes scapularis]
Length = 242
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 98/115 (85%), Gaps = 4/115 (3%)
Query: 28 TKAVP---NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ AVP + GP ECAGC K I +RFLLKALD WHEDCLKC CCDCRLGEVGSTL+T
Sbjct: 33 STAVPMLGDALPGP-ECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFT 91
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
KANLILCKRDYLRLFG+TG C+ACSK IPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 92 KANLILCKRDYLRLFGTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCNHR 146
>gi|427782399|gb|JAA56651.1| Putative rhombotin-1 [Rhipicephalus pulchellus]
Length = 294
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
GP ECAGC K I +RFLLKALD WHEDCLKC CCDCRLGEVGSTL+TKANLILCKRDYL
Sbjct: 44 GP-ECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYL 102
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TG C+ACSK IPAFEMVMRAR NVYHLECFACQ CNHR
Sbjct: 103 RLFGTTGLCSACSKTIPAFEMVMRARGNVYHLECFACQHCNHR 145
>gi|241738255|ref|XP_002414040.1| rhombotin, putative [Ixodes scapularis]
gi|215507894|gb|EEC17348.1| rhombotin, putative [Ixodes scapularis]
Length = 285
Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 1/103 (0%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
GP ECAGC K I +RFLLKALD WHEDCLKC CCDCRLGEVGSTL+TKANLILCKRDYL
Sbjct: 63 GP-ECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYL 121
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+TG C+ACSK IPAFEMVMRAR NVYHLECFACQ CNHR
Sbjct: 122 RLFGTTGLCSACSKTIPAFEMVMRARGNVYHLECFACQHCNHR 164
>gi|427781843|gb|JAA56373.1| Putative lim domain only 1 [Rhipicephalus pulchellus]
Length = 277
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 89/104 (85%), Positives = 93/104 (89%), Gaps = 1/104 (0%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
GP ECAGC K I +RFLLKALD WHEDCLKC CCDCRLGEVGSTL+TKANLILCKRDY
Sbjct: 40 SGP-ECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDY 98
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LRLFG+TG C+ACSK IPAFEMVMRAR NVYHLECFACQQCNHR
Sbjct: 99 LRLFGTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCNHR 142
>gi|332024559|gb|EGI64757.1| Rhombotin-1 [Acromyrmex echinatior]
Length = 99
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/99 (88%), Positives = 94/99 (94%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCGK IT+R+LLKALD+YWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG
Sbjct: 1 CAGCGKTITERYLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TG CAAC+K IPAFEMVMRAR NVYHL+CFACQQC HR
Sbjct: 61 NTGCCAACNKQIPAFEMVMRARTNVYHLDCFACQQCTHR 99
>gi|24659990|gb|AAH39512.1| LIM domain only 1 (rhombotin 1), partial [Homo sapiens]
Length = 217
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/124 (70%), Positives = 99/124 (79%), Gaps = 2/124 (1%)
Query: 16 SMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL 75
+M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRL
Sbjct: 62 TMVLDQEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRL 119
Query: 76 GEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
GEVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ
Sbjct: 120 GEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQL 179
Query: 136 CNHR 139
CN R
Sbjct: 180 CNQR 183
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 149 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 203
>gi|326912347|ref|XP_003202514.1| PREDICTED: hypothetical protein LOC100545049, partial [Meleagris
gallopavo]
Length = 391
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 256 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 315
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 316 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 357
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 323 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 381
Query: 100 GSTGY 104
GY
Sbjct: 382 MKEGY 386
>gi|27545195|ref|NP_775326.1| rhombotin-1 [Danio rerio]
gi|432851744|ref|XP_004067063.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
gi|82213250|sp|Q8JFQ2.1|RBTN1_DANRE RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|22652062|gb|AAN03595.1|AF398514_1 LIM-only 1 [Danio rerio]
gi|62531025|gb|AAH92690.1| LIM domain only 1 [Danio rerio]
gi|182889294|gb|AAI64905.1| Lmo1 protein [Danio rerio]
Length = 155
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 99/123 (80%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + ++G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDKEEGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>gi|281341700|gb|EFB17284.1| hypothetical protein PANDA_004271 [Ailuropoda melanoleuca]
Length = 192
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 38 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 95
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 96 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 155
Query: 137 NHR 139
N R
Sbjct: 156 NQR 158
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 124 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDRFFLKNNMILCQMDY 178
>gi|395543424|ref|XP_003773618.1| PREDICTED: rhombotin-1 [Sarcophilus harrisii]
Length = 155
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M+ +G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MESTASEGVPMLSVHPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>gi|147906368|ref|NP_001089735.1| rhombotin-1 [Xenopus laevis]
gi|170671950|ref|NP_001116283.1| uncharacterized protein LOC100144284 [Xenopus (Silurana)
tropicalis]
gi|123899828|sp|Q3B8H4.1|RBTN1_XENLA RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|77748294|gb|AAI06432.1| MGC131122 protein [Xenopus laevis]
gi|165905264|gb|AAI57153.1| LOC100144284 protein [Xenopus (Silurana) tropicalis]
Length = 156
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 99/123 (80%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M ++ + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLEKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|395743059|ref|XP_003777862.1| PREDICTED: rhombotin-1 isoform 2 [Pongo abelii]
Length = 137
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
>gi|402894308|ref|XP_003910308.1| PREDICTED: rhombotin-1 isoform 3 [Papio anubis]
Length = 137
Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
>gi|343790981|ref|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sapiens]
gi|224096300|ref|XP_002196668.1| PREDICTED: LIM domain only protein 3 isoform 2 [Taeniopygia
guttata]
gi|296210852|ref|XP_002752234.1| PREDICTED: LIM domain only protein 3-like isoform 2 [Callithrix
jacchus]
gi|332232836|ref|XP_003265608.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838722|ref|XP_520773.3| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|345792350|ref|XP_003433617.1| PREDICTED: LIM domain only protein 3 [Canis lupus familiaris]
gi|363728014|ref|XP_416410.3| PREDICTED: LIM domain only protein 3 [Gallus gallus]
gi|395538518|ref|XP_003771226.1| PREDICTED: LIM domain only protein 3 isoform 1 [Sarcophilus
harrisii]
gi|397491237|ref|XP_003816579.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
gi|403286717|ref|XP_003934624.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
boliviensis]
gi|410963922|ref|XP_003988507.1| PREDICTED: LIM domain only protein 3 isoform 1 [Felis catus]
gi|426225414|ref|XP_004006861.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426371864|ref|XP_004052860.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|62148930|dbj|BAD93349.1| hypothetical protein [Homo sapiens]
gi|355564057|gb|EHH20557.1| hypothetical protein EGK_03435 [Macaca mulatta]
gi|355785943|gb|EHH66126.1| hypothetical protein EGM_03045 [Macaca fascicularis]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 122
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGY 104
GY
Sbjct: 147 MKEGY 151
>gi|432942706|ref|XP_004083043.1| PREDICTED: LIM domain only protein 3-like [Oryzias latipes]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 122
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGY 104
GY
Sbjct: 147 MKDGY 151
>gi|350534892|ref|NP_001232644.1| putative LIM domain only 1 variant 2 [Taeniopygia guttata]
gi|197127604|gb|ACH44102.1| putative LIM domain only 1 variant 2 [Taeniopygia guttata]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|332835820|ref|XP_003312956.1| PREDICTED: rhombotin-1 isoform 3 [Pan troglodytes]
gi|397494624|ref|XP_003818174.1| PREDICTED: rhombotin-1 isoform 2 [Pan paniscus]
gi|426367363|ref|XP_004050702.1| PREDICTED: rhombotin-1 isoform 3 [Gorilla gorilla gorilla]
gi|64654569|gb|AAH96058.1| LMO1 protein [Homo sapiens]
Length = 137
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
>gi|116734837|ref|NP_001069363.1| rhombotin-1 [Bos taurus]
gi|119361442|sp|Q0P5B3.1|RBTN1_BOVIN RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|112362108|gb|AAI20274.1| LIM domain only 1 (rhombotin 1) [Bos taurus]
gi|296480122|tpg|DAA22237.1| TPA: rhombotin-1 [Bos taurus]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|395850543|ref|XP_003797843.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 122
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGY 104
GY
Sbjct: 147 MKEGY 151
>gi|4505005|ref|NP_002306.1| rhombotin-1 isoform a [Homo sapiens]
gi|73988404|ref|XP_851199.1| PREDICTED: rhombotin-1 isoform 1 [Canis lupus familiaris]
gi|149719424|ref|XP_001504951.1| PREDICTED: rhombotin-1-like [Equus caballus]
gi|297268472|ref|XP_002799696.1| PREDICTED: rhombotin-1-like [Macaca mulatta]
gi|297689330|ref|XP_002822108.1| PREDICTED: rhombotin-1 isoform 1 [Pongo abelii]
gi|332211700|ref|XP_003254951.1| PREDICTED: rhombotin-1 isoform 1 [Nomascus leucogenys]
gi|332835816|ref|XP_003312955.1| PREDICTED: rhombotin-1 isoform 2 [Pan troglodytes]
gi|390470213|ref|XP_003734256.1| PREDICTED: rhombotin-1-like [Callithrix jacchus]
gi|395815205|ref|XP_003781125.1| PREDICTED: rhombotin-1 isoform 1 [Otolemur garnettii]
gi|397494622|ref|XP_003818173.1| PREDICTED: rhombotin-1 isoform 1 [Pan paniscus]
gi|402894304|ref|XP_003910306.1| PREDICTED: rhombotin-1 isoform 1 [Papio anubis]
gi|403254192|ref|XP_003919861.1| PREDICTED: rhombotin-1 [Saimiri boliviensis boliviensis]
gi|410973386|ref|XP_003993134.1| PREDICTED: rhombotin-1 [Felis catus]
gi|426367359|ref|XP_004050700.1| PREDICTED: rhombotin-1 isoform 1 [Gorilla gorilla gorilla]
gi|132532|sp|P25800.1|RBTN1_HUMAN RecName: Full=Rhombotin-1; AltName: Full=Cysteine-rich protein
TTG-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1; AltName: Full=T-cell translocation protein
1
gi|340454|gb|AAA36819.1| T-cell translocation protein [Homo sapiens]
gi|11071536|emb|CAC14587.1| LIM domain only 1 protein [Homo sapiens]
gi|46854536|gb|AAH69793.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|46854582|gb|AAH69752.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|46854710|gb|AAH69673.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|64654051|gb|AAH96056.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|64654605|gb|AAH96057.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|119589032|gb|EAW68626.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|312152710|gb|ADQ32867.1| LIM domain only 1 (rhombotin 1) [synthetic construct]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|198473944|ref|XP_002132591.1| GA25913 [Drosophila pseudoobscura pseudoobscura]
gi|198138178|gb|EDY69993.1| GA25913 [Drosophila pseudoobscura pseudoobscura]
Length = 399
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 88/99 (88%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCGKHI DR+ L+ALDM WH+DCLKCGCCDCRLGEVGSTLY NLILCK DY RLFG
Sbjct: 193 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLFG 252
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TGYCAACSKVI AFEMVMRAR NVYHL CFACQQCN+R
Sbjct: 253 NTGYCAACSKVIFAFEMVMRARTNVYHLHCFACQQCNYR 291
>gi|163915157|ref|NP_001106526.1| rhombotin-1 [Sus scrofa]
gi|160858218|dbj|BAF93842.1| LIM domain only 1 [Sus scrofa]
Length = 156
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQLDY 142
>gi|327281281|ref|XP_003225377.1| PREDICTED: rhombotin-1-like [Anolis carolinensis]
Length = 155
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>gi|16975506|ref|NP_476514.1| rhombotin-1 [Mus musculus]
gi|50401115|sp|Q924W9.1|RBTN1_MOUSE RecName: Full=Rhombotin-1; AltName: Full=Cysteine-rich protein
TTG-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1; AltName: Full=T-cell translocation protein
1
gi|14253116|emb|CAC39310.1| putative LMO1 homologue [Mus musculus]
gi|31418699|gb|AAH53074.1| LIM domain only 1 [Mus musculus]
gi|74227271|dbj|BAE21734.1| unnamed protein product [Mus musculus]
gi|148684982|gb|EDL16929.1| LIM domain only 1, isoform CRA_c [Mus musculus]
Length = 156
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQVDY 142
>gi|149068370|gb|EDM17922.1| rCG40540, isoform CRA_b [Rattus norvegicus]
Length = 156
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|394025675|ref|NP_001257357.1| rhombotin-1 isoform b [Homo sapiens]
gi|332835818|ref|XP_001165367.2| PREDICTED: rhombotin-1 isoform 1 [Pan troglodytes]
gi|395815207|ref|XP_003781126.1| PREDICTED: rhombotin-1 isoform 2 [Otolemur garnettii]
gi|402894306|ref|XP_003910307.1| PREDICTED: rhombotin-1 isoform 2 [Papio anubis]
Length = 155
Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDQEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>gi|426225422|ref|XP_004006865.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
Length = 170
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 99/119 (83%), Gaps = 1/119 (0%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS 80
T G Q +V + + P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGS
Sbjct: 19 TAPGCIQMLSVQPDTK-PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGS 77
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TLYTKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 78 TLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 136
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 102 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 160
Query: 100 GSTGY 104
GY
Sbjct: 161 MKEGY 165
>gi|13569715|gb|AAK31207.1|AF353304_1 neuronal specific transcription factor DAT1 [Rattus norvegicus]
Length = 155
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDQEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 145
Query: 100 GSTGY 104
GY
Sbjct: 146 MKEGY 150
>gi|403286719|ref|XP_003934625.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
boliviensis]
Length = 163
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 28 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 87
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|354497087|ref|XP_003510653.1| PREDICTED: rhombotin-1-like [Cricetulus griseus]
Length = 156
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLHKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|344251414|gb|EGW07518.1| LIM domain only protein 3 [Cricetulus griseus]
Length = 149
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 2 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 59
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 60 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 115
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 81 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 139
Query: 100 GSTGY 104
GY
Sbjct: 140 MKEGY 144
>gi|148684980|gb|EDL16927.1| LIM domain only 1, isoform CRA_a [Mus musculus]
Length = 155
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDQEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQVDY 141
>gi|145651807|ref|NP_620812.2| LIM domain only protein 3 [Rattus norvegicus]
gi|149068369|gb|EDM17921.1| rCG40540, isoform CRA_a [Rattus norvegicus]
Length = 155
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDQEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>gi|281352404|gb|EFB27988.1| hypothetical protein PANDA_007272 [Ailuropoda melanoleuca]
Length = 149
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 96/116 (82%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 2 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 59
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 60 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 115
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 81 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 139
Query: 100 GSTGY 104
GY
Sbjct: 140 MKEGY 144
>gi|147902408|ref|NP_001084116.1| LIM domain only protein 3 [Xenopus laevis]
gi|82225303|sp|Q9YH16.1|LMO3_XENLA RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=LIM domain only protein 1; Short=LMO-1; Short=xLMO1
gi|4100164|gb|AAD00763.1| transcription factor XLMO1 [Xenopus laevis]
Length = 156
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 122
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGYCA 106
GY A
Sbjct: 147 MKEGYSA 153
>gi|348536393|ref|XP_003455681.1| PREDICTED: LIM domain only protein 3-like [Oreochromis niloticus]
Length = 156
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 122
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGY 104
GY
Sbjct: 147 MKEGY 151
>gi|195147434|ref|XP_002014685.1| GL18822 [Drosophila persimilis]
gi|194106638|gb|EDW28681.1| GL18822 [Drosophila persimilis]
Length = 381
Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 87/99 (87%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCGKHI DR+ L+ALDM WH+DCLKCGCCDCRLGEVGSTLY NLILCK DY RLFG
Sbjct: 187 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLFG 246
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TGYCAACSKVI AFEMVMRA NVYH +CFACQQCNHR
Sbjct: 247 NTGYCAACSKVISAFEMVMRAHTNVYHFDCFACQQCNHR 285
>gi|395850545|ref|XP_003797844.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
Length = 163
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 28 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 87
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|318052393|ref|NP_001187844.1| LIM domain only protein 3 [Ictalurus punctatus]
gi|308324124|gb|ADO29197.1| lim domain only protein 3 [Ictalurus punctatus]
Length = 156
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 122
Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGY 104
GY
Sbjct: 147 MKEGY 151
>gi|395538520|ref|XP_003771227.1| PREDICTED: LIM domain only protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 163
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 28 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 87
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|301766676|ref|XP_002918759.1| PREDICTED: LIM domain only protein 3-like [Ailuropoda melanoleuca]
Length = 163
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 28 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 87
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|343790984|ref|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sapiens]
gi|332232844|ref|XP_003265612.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838730|ref|XP_003313578.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|397491239|ref|XP_003816580.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
gi|426371876|ref|XP_004052866.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|194377506|dbj|BAG57701.1| unnamed protein product [Homo sapiens]
gi|221045430|dbj|BAH14392.1| unnamed protein product [Homo sapiens]
Length = 163
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 28 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 87
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|296210850|ref|XP_002752233.1| PREDICTED: LIM domain only protein 3-like isoform 1 [Callithrix
jacchus]
Length = 167
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 32 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 91
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 92 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 133
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 99 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 157
Query: 100 GSTGY 104
GY
Sbjct: 158 MKEGY 162
>gi|226442662|ref|NP_001139870.1| Rhombotin-1 [Salmo salar]
gi|221219524|gb|ACM08423.1| Rhombotin-1 [Salmo salar]
Length = 155
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + ++ P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDKEESVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>gi|345792348|ref|XP_866550.2| PREDICTED: LIM domain only protein 3 isoform 6 [Canis lupus
familiaris]
Length = 163
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 28 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 87
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|410913147|ref|XP_003970050.1| PREDICTED: rhombotin-1-like [Takifugu rubripes]
Length = 158
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 20 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 79
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 80 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 124
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 90 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 144
>gi|348569402|ref|XP_003470487.1| PREDICTED: LIM domain only protein 3-like [Cavia porcellus]
Length = 156
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 21 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 80
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 81 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 122
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGY 104
GY
Sbjct: 147 MKEGY 151
>gi|301761580|ref|XP_002916216.1| PREDICTED: rhombotin-1-like [Ailuropoda melanoleuca]
Length = 163
Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/129 (68%), Positives = 101/129 (78%), Gaps = 1/129 (0%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGC 70
+ R + + Q + +G Q+ CAGC + I DR+LLKALD YWHEDCLKC C
Sbjct: 1 MGRPTFFLMPPQFYMSVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCAC 60
Query: 71 CDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLEC 130
CDCRLGEVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+C
Sbjct: 61 CDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDC 120
Query: 131 FACQQCNHR 139
FACQ CN R
Sbjct: 121 FACQLCNQR 129
Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDRFFLKNNMILCQMDY 149
>gi|189065489|dbj|BAG35328.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR-SCVGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>gi|410044796|ref|XP_003951874.1| PREDICTED: rhombotin-1 [Pan troglodytes]
Length = 193
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 46 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 103
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 104 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 159
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 125 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 179
>gi|441645968|ref|XP_004090708.1| PREDICTED: rhombotin-1 isoform 2 [Nomascus leucogenys]
Length = 193
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 46 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 103
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 104 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 159
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 125 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 179
>gi|326920034|ref|XP_003206281.1| PREDICTED: rhombotin-1-like [Meleagris gallopavo]
gi|363734128|ref|XP_003641345.1| PREDICTED: rhombotin-1-like isoform 1 [Gallus gallus]
gi|363734130|ref|XP_003641346.1| PREDICTED: rhombotin-1-like isoform 2 [Gallus gallus]
Length = 145
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 131
>gi|426367361|ref|XP_004050701.1| PREDICTED: rhombotin-1 isoform 2 [Gorilla gorilla gorilla]
Length = 193
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 46 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 103
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 104 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 159
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 125 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 179
>gi|426245706|ref|XP_004016646.1| PREDICTED: rhombotin-1 [Ovis aries]
Length = 158
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 11 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLY 68
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 69 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 124
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 90 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 144
>gi|344280595|ref|XP_003412068.1| PREDICTED: rhombotin-1-like [Loxodonta africana]
gi|348553346|ref|XP_003462488.1| PREDICTED: rhombotin-1-like [Cavia porcellus]
gi|344248106|gb|EGW04210.1| Rhombotin-1 [Cricetulus griseus]
gi|444522351|gb|ELV13369.1| Rhombotin-1 [Tupaia chinensis]
Length = 145
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 131
>gi|449271287|gb|EMC81748.1| LIM domain only protein 3, partial [Columba livia]
Length = 147
Score = 183 bits (464), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 12 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 71
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 72 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 113
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 79 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 137
Query: 100 GSTGY 104
GY
Sbjct: 138 MKEGY 142
>gi|126332439|ref|XP_001379124.1| PREDICTED: rhombotin-1-like [Monodelphis domestica]
Length = 214
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/107 (80%), Positives = 96/107 (89%), Gaps = 1/107 (0%)
Query: 34 NAQGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
+ +G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+
Sbjct: 74 HPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCR 133
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 134 RDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 180
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 146 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 200
>gi|431919610|gb|ELK17998.1| Rhombotin-1 [Pteropus alecto]
Length = 145
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 131
>gi|351700295|gb|EHB03214.1| Rhombotin-1, partial [Heterocephalus glaber]
gi|355566730|gb|EHH23109.1| hypothetical protein EGK_06496, partial [Macaca mulatta]
gi|355752348|gb|EHH56468.1| hypothetical protein EGM_05879, partial [Macaca fascicularis]
Length = 148
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 1 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 58
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 59 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 114
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 80 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 134
>gi|21361802|ref|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|46402195|ref|NP_997105.1| LIM domain only protein 3 [Mus musculus]
gi|47778935|ref|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|114052438|ref|NP_001039802.1| LIM domain only protein 3 [Bos taurus]
gi|162951801|ref|NP_001106155.1| LIM domain only protein 3 [Sus scrofa]
gi|205830463|ref|NP_001127650.2| LIM domain only protein 3 isoform 2 [Pongo abelii]
gi|205830488|ref|NP_001125415.1| LIM domain only protein 3 isoform 1 [Pongo abelii]
gi|343790975|ref|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|343790979|ref|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|388453193|ref|NP_001253235.1| LIM domain only protein 3 [Macaca mulatta]
gi|73997103|ref|XP_866536.1| PREDICTED: LIM domain only protein 3 isoform 5 [Canis lupus
familiaris]
gi|224096294|ref|XP_002196644.1| PREDICTED: LIM domain only protein 3 isoform 1 [Taeniopygia
guttata]
gi|224096298|ref|XP_002196694.1| PREDICTED: LIM domain only protein 3 isoform 3 [Taeniopygia
guttata]
gi|291392560|ref|XP_002712669.1| PREDICTED: LIM domain only 3 [Oryctolagus cuniculus]
gi|296210858|ref|XP_002752237.1| PREDICTED: LIM domain only protein 3-like isoform 5 [Callithrix
jacchus]
gi|296210864|ref|XP_002752240.1| PREDICTED: LIM domain only protein 3-like isoform 8 [Callithrix
jacchus]
gi|327282546|ref|XP_003226003.1| PREDICTED: LIM domain only protein 3-like [Anolis carolinensis]
gi|332232834|ref|XP_003265607.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232838|ref|XP_003265609.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232840|ref|XP_003265610.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232842|ref|XP_003265611.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232846|ref|XP_003265613.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232848|ref|XP_003265614.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232850|ref|XP_003265615.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838720|ref|XP_003313574.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838724|ref|XP_003313575.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838726|ref|XP_003313576.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838728|ref|XP_003313577.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838732|ref|XP_003313579.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838734|ref|XP_003339274.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838736|ref|XP_003313580.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|334348292|ref|XP_001366731.2| PREDICTED: LIM domain only protein 3-like [Monodelphis domestica]
gi|354477495|ref|XP_003500955.1| PREDICTED: LIM domain only protein 3-like [Cricetulus griseus]
gi|392347749|ref|XP_003749911.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
gi|402885348|ref|XP_003906123.1| PREDICTED: LIM domain only protein 3 [Papio anubis]
gi|410046363|ref|XP_003952174.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|410046365|ref|XP_003952175.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|410963924|ref|XP_003988508.1| PREDICTED: LIM domain only protein 3 isoform 2 [Felis catus]
gi|410963926|ref|XP_003988509.1| PREDICTED: LIM domain only protein 3 isoform 3 [Felis catus]
gi|426225412|ref|XP_004006860.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225416|ref|XP_004006862.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225418|ref|XP_004006863.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225420|ref|XP_004006864.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426371866|ref|XP_004052861.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371868|ref|XP_004052862.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371870|ref|XP_004052863.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371872|ref|XP_004052864.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371874|ref|XP_004052865.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371878|ref|XP_004052867.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371880|ref|XP_004052868.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371882|ref|XP_004052869.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371884|ref|XP_004052870.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|441669886|ref|XP_004092147.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|441669892|ref|XP_004092148.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|449482200|ref|XP_004174330.1| PREDICTED: LIM domain only protein 3 [Taeniopygia guttata]
gi|34098514|sp|Q8BZL8.1|LMO3_MOUSE RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1
gi|34098603|sp|Q8TAP4.1|LMO3_HUMAN RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1;
AltName: Full=Rhombotin-3
gi|75070808|sp|Q5RBW7.1|LMO3_PONAB RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|108860786|sp|Q2KIA3.1|LMO3_BOVIN RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|20070930|gb|AAH26311.1| LIM domain only 3 (rhombotin-like 2) [Homo sapiens]
gi|26329757|dbj|BAC28617.1| unnamed protein product [Mus musculus]
gi|34784567|gb|AAH57086.1| Lmo3 protein [Mus musculus]
gi|55727608|emb|CAH90559.1| hypothetical protein [Pongo abelii]
gi|55727981|emb|CAH90743.1| hypothetical protein [Pongo abelii]
gi|55730077|emb|CAH91763.1| hypothetical protein [Pongo abelii]
gi|55730911|emb|CAH92174.1| hypothetical protein [Pongo abelii]
gi|55733334|emb|CAH93349.1| hypothetical protein [Pongo abelii]
gi|55733457|emb|CAH93407.1| hypothetical protein [Pongo abelii]
gi|62148932|dbj|BAD93350.1| hypothetical protein [Homo sapiens]
gi|71052099|gb|AAH50085.1| LMO3 protein [Homo sapiens]
gi|86438236|gb|AAI12713.1| LIM domain only 3 (rhombotin-like 2) [Bos taurus]
gi|119616777|gb|EAW96371.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616778|gb|EAW96372.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616781|gb|EAW96375.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616782|gb|EAW96376.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616783|gb|EAW96377.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|160858220|dbj|BAF93843.1| LIM domain only 3 [Sus scrofa]
gi|167773937|gb|ABZ92403.1| LIM domain only 3 (rhombotin-like 2) [synthetic construct]
gi|168279025|dbj|BAG11392.1| LIM domain only protein 3 [synthetic construct]
gi|296487271|tpg|DAA29384.1| TPA: LIM domain only protein 3 [Bos taurus]
gi|380783249|gb|AFE63500.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
gi|380783251|gb|AFE63501.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
Length = 145
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>gi|432103234|gb|ELK30474.1| Rhombotin-1, partial [Myotis davidii]
Length = 156
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 122
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>gi|449280864|gb|EMC88089.1| Rhombotin-1, partial [Columba livia]
Length = 151
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 4 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 61
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 62 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 117
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 83 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 137
>gi|120974283|gb|ABM46668.1| LMO1 [Gorilla gorilla]
gi|121483886|gb|ABM54243.1| LMO1 [Pan paniscus]
gi|124111156|gb|ABM91959.1| LMO1 [Pan troglodytes]
Length = 147
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 9 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 68
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 69 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 113
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 79 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 133
>gi|338725822|ref|XP_003365206.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
[Equus caballus]
Length = 168
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 33 PKGCAGCTRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 92
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 93 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 134
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 100 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 158
Query: 100 GSTGY 104
GY
Sbjct: 159 MKEGY 163
>gi|50924940|gb|AAH79734.1| XLMO1 protein [Xenopus laevis]
Length = 145
Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 91/102 (89%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 111
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGYCA 106
GY A
Sbjct: 136 MKEGYSA 142
>gi|148684981|gb|EDL16928.1| LIM domain only 1, isoform CRA_b [Mus musculus]
Length = 145
Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQVDY 131
>gi|440900839|gb|ELR51884.1| Rhombotin-1, partial [Bos grunniens mutus]
Length = 148
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 1 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLGEVGSTLY 58
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 59 TKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 114
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 80 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 134
>gi|34098349|sp|Q99MB5.2|LMO3_RAT RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1
Length = 145
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>gi|149068371|gb|EDM17923.1| rCG40540, isoform CRA_c [Rattus norvegicus]
Length = 145
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 131
>gi|348509785|ref|XP_003442427.1| PREDICTED: rhombotin-1-like [Oreochromis niloticus]
Length = 169
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/99 (84%), Positives = 91/99 (91%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLRLFG
Sbjct: 37 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 96
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 97 TTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 135
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 101 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 155
>gi|66472234|ref|NP_001018575.1| LIM domain only protein 3 [Danio rerio]
gi|82228853|sp|Q503U0.1|LMO3_DANRE RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|63101819|gb|AAH95186.1| LIM domain only 3 [Danio rerio]
Length = 145
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 91/102 (89%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 111
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>gi|47217221|emb|CAF96744.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/133 (65%), Positives = 103/133 (77%), Gaps = 10/133 (7%)
Query: 7 LEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCL 66
+E+LK+ + G Q P+ P+ CAGC + I DR+LLKALD +WHEDCL
Sbjct: 1 MEYLKV--------LKDGIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKFWHEDCL 50
Query: 67 KCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVY 126
KC CC+CRLGEVGSTLYTKANLILC+RDYLRLFG+TG CA CSK+IPAFEMVMRAR+NVY
Sbjct: 51 KCACCECRLGEVGSTLYTKANLILCRRDYLRLFGATGNCAVCSKLIPAFEMVMRARDNVY 110
Query: 127 HLECFACQQCNHR 139
HL+CFACQ C+ R
Sbjct: 111 HLDCFACQLCSQR 123
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C R VG + K NLILC+ DY
Sbjct: 89 CAVCSKLIPAFEMVMRARDNVYHLDCFACQLCSQRFC-VGDKFFLKNNLILCQTDYEDGI 147
Query: 100 GSTGY 104
GY
Sbjct: 148 MKEGY 152
>gi|195147432|ref|XP_002014684.1| GL19311 [Drosophila persimilis]
gi|194106637|gb|EDW28680.1| GL19311 [Drosophila persimilis]
Length = 399
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/99 (81%), Positives = 88/99 (88%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCGKHI DR+ L+ALDM WH+DCLKCGCCDCRLGEVGSTLY NL+LCK DY RLFG
Sbjct: 193 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLFG 252
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TGYCAACSKVI AF+MVMRAR NVYHL CFACQQCN+R
Sbjct: 253 NTGYCAACSKVIFAFQMVMRARTNVYHLHCFACQQCNYR 291
>gi|195177608|ref|XP_002028925.1| GL13160 [Drosophila persimilis]
gi|194107602|gb|EDW29645.1| GL13160 [Drosophila persimilis]
Length = 399
Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/99 (81%), Positives = 88/99 (88%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCGKHI DR+ L+ALDM WH+DCLKCGCCDCRLGEVGSTLY NL+LCK DY RLFG
Sbjct: 193 CAGCGKHIKDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLFG 252
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TGYCAACSKVI AF+MVMRAR NVYHL CFACQQCN+R
Sbjct: 253 NTGYCAACSKVIFAFQMVMRARTNVYHLHCFACQQCNYR 291
>gi|410918403|ref|XP_003972675.1| PREDICTED: LIM domain only protein 3-like [Takifugu rubripes]
Length = 156
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 97/116 (83%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD +WHEDCLKC CC+CRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKFWHEDCLKCACCECRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ C+ R
Sbjct: 67 TKANLILCRRDYLRLFGATGSCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCSQR 122
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 40 ECAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
CA C K I +++A D +H DC C C R VG + K NLILC+ DY
Sbjct: 87 SCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCSQRFC-VGDKFFLKNNLILCQTDYEDG 145
Query: 99 FGSTGY 104
GY
Sbjct: 146 MMKEGY 151
>gi|21754884|dbj|BAC04582.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/102 (81%), Positives = 91/102 (89%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKA D YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKAPDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>gi|260785867|ref|XP_002587981.1| hypothetical protein BRAFLDRAFT_88960 [Branchiostoma floridae]
gi|229273137|gb|EEN43992.1| hypothetical protein BRAFLDRAFT_88960 [Branchiostoma floridae]
Length = 198
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/108 (75%), Positives = 94/108 (87%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P+ + CAGC K I DR+LLKALD +WHEDCLKC CC+CRLGEVGSTL+TKANLILC
Sbjct: 42 PSESVVRHGCAGCKKKIKDRYLLKALDQFWHEDCLKCACCECRLGEVGSTLFTKANLILC 101
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+RDYLRLFG+TG CA C+K+IPAFE+VMRA NNVYHL+CFACQ+CNHR
Sbjct: 102 RRDYLRLFGTTGSCAVCAKIIPAFEIVMRAGNNVYHLDCFACQRCNHR 149
>gi|47220587|emb|CAG05613.1| unnamed protein product [Tetraodon nigroviridis]
Length = 317
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/104 (76%), Positives = 89/104 (85%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P+ CAGC I DRF+L+ALD YWHEDCLKC CCDCRLG VGSTLYT+ANLILC+RDY
Sbjct: 11 EKPRGCAGCNGKIRDRFMLQALDRYWHEDCLKCACCDCRLGRVGSTLYTRANLILCRRDY 70
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LRLFG TG CAAC K+IPAFEMVMRAR+NVYHL+CFACQ C R
Sbjct: 71 LRLFGVTGNCAACGKMIPAFEMVMRARDNVYHLDCFACQLCRQR 114
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA CGK I +++A D +H DC C C R VG + K N+ILC+ DY
Sbjct: 80 CAACGKMIPAFEMVMRARDNVYHLDCFACQLCRQRFC-VGDRFFLKNNMILCQLDY 134
>gi|348535893|ref|XP_003455432.1| PREDICTED: rhombotin-1-like [Oreochromis niloticus]
Length = 155
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 90/104 (86%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P+ CAGC I DRF+L+ALD YWHEDCLKC CCDCRLG VGSTLYT+ANLILC+RDY
Sbjct: 18 EKPRGCAGCNGKIRDRFMLQALDRYWHEDCLKCACCDCRLGRVGSTLYTRANLILCRRDY 77
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LRLFG TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C R
Sbjct: 78 LRLFGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQR 121
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFC-VGDKFFLKNNMILCQLDY 141
>gi|156405705|ref|XP_001640872.1| predicted protein [Nematostella vectensis]
gi|156228008|gb|EDO48809.1| predicted protein [Nematostella vectensis]
Length = 155
Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 89/103 (86%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
+ C GCG I +RFLLKALD YWHEDCLKC CC+CRLGEVGSTLYTKANLILCKRDYL
Sbjct: 16 SKRTCGGCGVLINERFLLKALDRYWHEDCLKCSCCECRLGEVGSTLYTKANLILCKRDYL 75
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RLFG+ G+C+ C K IPAFEMVMRAR+NVYHLECF+CQ+CN R
Sbjct: 76 RLFGTRGFCSVCCKTIPAFEMVMRARDNVYHLECFSCQRCNQR 118
>gi|432860305|ref|XP_004069493.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
Length = 155
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/104 (75%), Positives = 90/104 (86%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P+ CAGC I DRF+L+ALD +WHEDCLKC CCDCRLG VGSTLYT++NLILC+RDY
Sbjct: 18 EKPRGCAGCNGKILDRFMLQALDRFWHEDCLKCACCDCRLGRVGSTLYTRSNLILCRRDY 77
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LRLFG TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C R
Sbjct: 78 LRLFGVTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQR 121
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCRQRFC-VGDKFFLKNNMILCQLDY 141
>gi|48095039|ref|XP_394342.1| PREDICTED: LIM domain only protein 3-like [Apis mellifera]
Length = 218
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 28 TKAVPNNAQGPQ-ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
TK+ P+ + Q EC GCG+ IT+R+LLK LDM+WHEDCLKC C+CRL E G +LY K+
Sbjct: 4 TKSEPSKSGAVQRECGGCGEVITERYLLKVLDMFWHEDCLKCNSCNCRLVEAGPSLYIKS 63
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
NLILCK+DYL+LFG TG+CAAC+K IPAFEMVMRAR NVYHLECFACQQCN+R
Sbjct: 64 NLILCKKDYLKLFGLTGHCAACNKTIPAFEMVMRARTNVYHLECFACQQCNYR 116
>gi|350427425|ref|XP_003494754.1| PREDICTED: LIM domain only protein 3-like [Bombus impatiens]
Length = 220
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 28 TKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
TK+ P+ N +EC GCG+ IT+R+LLK LDM+WHEDCLKC C+CRL E G +L+ K+
Sbjct: 4 TKSEPSKNGAVQRECGGCGEVITERYLLKVLDMFWHEDCLKCNSCNCRLVEAGPSLFIKS 63
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
NLILCK+DYL+LFG TG+CAAC+K IPAFEMVMRAR NVYHLECFACQQCN+R
Sbjct: 64 NLILCKKDYLKLFGHTGHCAACNKTIPAFEMVMRARTNVYHLECFACQQCNYR 116
>gi|340710495|ref|XP_003393823.1| PREDICTED: LIM domain only protein 3-like [Bombus terrestris]
Length = 220
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
Query: 28 TKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
TK+ P+ N +EC GCG+ IT+R+LLK LDM+WHEDCLKC C+CRL E G +L+ K+
Sbjct: 4 TKSEPSKNGAVQRECGGCGEVITERYLLKVLDMFWHEDCLKCNSCNCRLVEAGPSLFIKS 63
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
NLILCK+DYL+LFG TG+CAAC+K IPAFEMVMRAR NVYHLECFACQQCN+R
Sbjct: 64 NLILCKKDYLKLFGHTGHCAACNKTIPAFEMVMRARTNVYHLECFACQQCNYR 116
>gi|405975337|gb|EKC39910.1| Rhombotin-1 [Crassostrea gigas]
Length = 198
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 98/130 (75%), Gaps = 14/130 (10%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q + Q+CAGC K I+DRFLLKAL+ YWHEDCLKC CCDCRLGEVGSTL+
Sbjct: 7 GPVQISQEAVSMSTKQDCAGCKKAISDRFLLKALEQYWHEDCLKCSCCDCRLGEVGSTLF 66
Query: 84 TKANLI-------LC-------KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLE 129
TKANL+ +C + YLRLFG+TGYC+ACSK+IPAFEMVMRA++NVYHLE
Sbjct: 67 TKANLLHWLIRIEVCVSGGKDWQFIYLRLFGTTGYCSACSKMIPAFEMVMRAKSNVYHLE 126
Query: 130 CFACQQCNHR 139
CFACQQCNHR
Sbjct: 127 CFACQQCNHR 136
>gi|391328654|ref|XP_003738800.1| PREDICTED: rhombotin-1-like [Metaseiulus occidentalis]
Length = 193
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 97/125 (77%), Gaps = 1/125 (0%)
Query: 16 SMDVKTQQGAQQTKAVPNNAQGPQ-ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
++ V + + V +QG + C GC K I +R+LLKAL+ +WHEDCLKC CC+CR
Sbjct: 12 ALTVSRWTNSTMSNGVVGASQGDELHCTGCQKPIRERYLLKALEQFWHEDCLKCACCECR 71
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGSTL+TK+NLILCKRDYLRLFG+TG C AC K IPAFEMVMRA+ NVYHL+CFACQ
Sbjct: 72 LGEVGSTLFTKSNLILCKRDYLRLFGTTGLCCACEKGIPAFEMVMRAKGNVYHLDCFACQ 131
Query: 135 QCNHR 139
QCN R
Sbjct: 132 QCNLR 136
>gi|321454865|gb|EFX66018.1| hypothetical protein DAPPUDRAFT_65078 [Daphnia pulex]
Length = 137
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 80/99 (80%), Positives = 89/99 (89%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG+ I DR+LL+ALD YWHEDCLKC CC CRLGEVGS L+TKANLILCKRDYLRLFG
Sbjct: 17 CAGCGQLIKDRYLLQALDSYWHEDCLKCSCCGCRLGEVGSNLFTKANLILCKRDYLRLFG 76
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TG CAAC K IPAFEMVMRA++NVYHL+CFACQQC+ R
Sbjct: 77 ATGNCAACCKAIPAFEMVMRAKSNVYHLDCFACQQCHQR 115
>gi|322796266|gb|EFZ18842.1| hypothetical protein SINV_16506 [Solenopsis invicta]
Length = 89
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/89 (89%), Positives = 85/89 (95%)
Query: 51 RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSK 110
R+LLKALD+YWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG+TG CAAC+K
Sbjct: 1 RYLLKALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGCCAACNK 60
Query: 111 VIPAFEMVMRARNNVYHLECFACQQCNHR 139
IPAFEMVMRAR NVYHL+CFACQQC HR
Sbjct: 61 QIPAFEMVMRARTNVYHLDCFACQQCTHR 89
>gi|47230457|emb|CAF99650.1| unnamed protein product [Tetraodon nigroviridis]
Length = 169
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 95/137 (69%), Gaps = 23/137 (16%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 1 GVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 58
Query: 84 TKANLILCKRDYL---------------------RLFGSTGYCAACSKVIPAFEMVMRAR 122
TKANLILC+RDYL RLFG+TG CAACSK+IPAFEMVMRAR
Sbjct: 59 TKANLILCRRDYLRQERHTLHRTPDKHKSWAYKFRLFGTTGNCAACSKLIPAFEMVMRAR 118
Query: 123 NNVYHLECFACQQCNHR 139
+NVYHL+CFACQ CN R
Sbjct: 119 DNVYHLDCFACQLCNQR 135
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 101 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 155
>gi|391348069|ref|XP_003748274.1| PREDICTED: rhombotin-1-like [Metaseiulus occidentalis]
Length = 215
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/99 (77%), Positives = 85/99 (85%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I DR+LL ALD WHEDCLKCG CDCRLGEVGSTLY K NLILC+RDYLR++G
Sbjct: 88 CAGCQNSIKDRYLLCALDKMWHEDCLKCGSCDCRLGEVGSTLYFKNNLILCRRDYLRIYG 147
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ G C+AC K IP+FEMVMRAR+NVYHLECFACQQCNHR
Sbjct: 148 TAGLCSACHKTIPSFEMVMRARSNVYHLECFACQQCNHR 186
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C+ C K I +++A +H +C C C+ R VG Y N ILC+ DY L+
Sbjct: 152 CSACHKTIPSFEMVMRARSNVYHLECFACQQCNHRFC-VGDRFYLHNNRILCEDDYSPLY 210
Query: 100 GSTG 103
S G
Sbjct: 211 YSAG 214
>gi|427778219|gb|JAA54561.1| Putative lim domain only 1 [Rhipicephalus pulchellus]
Length = 315
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 93/142 (65%), Gaps = 39/142 (27%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKAN-------- 87
GP ECAGC K I +RFLLKALD WHEDCLKC CCDCRLGEVGSTL+TKAN
Sbjct: 40 SGP-ECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDY 98
Query: 88 ------------------------------LILCKRDYLRLFGSTGYCAACSKVIPAFEM 117
LILCKRDYLRLFG+TG C+ACSK IPAFEM
Sbjct: 99 LRLFGTTGLCSACSKAIPAFEMVMRARGXXLILCKRDYLRLFGTTGLCSACSKAIPAFEM 158
Query: 118 VMRARNNVYHLECFACQQCNHR 139
VMRAR NVYHLECFACQQCNHR
Sbjct: 159 VMRARGNVYHLECFACQQCNHR 180
>gi|242020913|ref|XP_002430895.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212516106|gb|EEB18157.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 237
Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 88/111 (79%)
Query: 29 KAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANL 88
K + + C GC K I DR+LL +L WHEDCLKC CC+ RLGEVG++LYT+ANL
Sbjct: 24 KTASSGKSSMEMCQGCRKPIRDRYLLNSLGRNWHEDCLKCTCCEARLGEVGASLYTRANL 83
Query: 89 ILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
ILCKRDYLRLFG+TGYC+AC K+IPAFEMVMRA+ NVYHLECFACQ C +R
Sbjct: 84 ILCKRDYLRLFGNTGYCSACKKIIPAFEMVMRAKTNVYHLECFACQLCGYR 134
>gi|380010949|ref|XP_003689578.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
[Apis florea]
Length = 249
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 102/125 (81%), Gaps = 7/125 (5%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
M+MDV + ++ N ECAGCGK IT+R+LLKA+D++WHEDCLKC CCDCR
Sbjct: 1 MTMDVSKSEPSK-------NGATQHECAGCGKAITERYLLKAMDLFWHEDCLKCXCCDCR 53
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
LGEVGS+L+T+ANLILCKRDYLRLFG+ G+CAAC+K IP FEMVM+AR NVYHL+CFACQ
Sbjct: 54 LGEVGSSLFTRANLILCKRDYLRLFGNPGHCAACNKQIPPFEMVMKARTNVYHLDCFACQ 113
Query: 135 QCNHR 139
QC HR
Sbjct: 114 QCTHR 118
>gi|324520352|gb|ADY47616.1| LIM domain only protein 3 [Ascaris suum]
Length = 163
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/99 (70%), Positives = 79/99 (79%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C I DRF+L+AL WHEDCLKC CC CRLGE+GS LY K ++ILC RDYLRLFG
Sbjct: 6 CAACSLRIRDRFMLRALGKLWHEDCLKCTCCHCRLGELGSKLYYKQSMILCARDYLRLFG 65
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TG CAAC K IPAFE+VMRA++NVYHL+CFAC CNHR
Sbjct: 66 LTGVCAACDKNIPAFELVMRAKSNVYHLQCFACHICNHR 104
>gi|357620282|gb|EHJ72529.1| putative rhombotin [Danaus plexippus]
Length = 180
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 77/83 (92%)
Query: 57 LDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFE 116
++ +WHEDCLKCGCCDCRLGEVGS LY KA+L+LCKRDYLRLFG+TG C AC+KVIPAFE
Sbjct: 1 MERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFE 60
Query: 117 MVMRARNNVYHLECFACQQCNHR 139
MVMRA++ VYHLECFACQQCNHR
Sbjct: 61 MVMRAKSFVYHLECFACQQCNHR 83
>gi|410908695|ref|XP_003967826.1| PREDICTED: rhombotin-1-like [Takifugu rubripes]
Length = 155
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/104 (77%), Positives = 90/104 (86%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P+ CAGC I DRF+L+ALD YWHEDCLKC CCDC LG VGSTLYT+ANLILC+RDY
Sbjct: 18 EKPRGCAGCNGKIRDRFMLQALDRYWHEDCLKCACCDCCLGRVGSTLYTRANLILCRRDY 77
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LRLFG TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C HR
Sbjct: 78 LRLFGVTGNCAACSKMIPAFEMVMRARDNVYHLDCFACQLCRHR 121
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C R VG + K N+ILC+ DY
Sbjct: 87 CAACSKMIPAFEMVMRARDNVYHLDCFACQLCRHRFC-VGDKFFLKNNMILCQLDY 141
>gi|147900853|ref|NP_001079705.1| LIM domain transcription factor LMO4-B [Xenopus laevis]
gi|82210060|sp|Q801P0.1|LMO4B_XENLA RecName: Full=LIM domain transcription factor LMO4-B; AltName:
Full=LIM domain only protein 4-B; Short=LMO-4-B
gi|29126820|gb|AAH48020.1| Lmo4-b protein [Xenopus laevis]
Length = 171
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 85/121 (70%)
Query: 19 VKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
V + T AV NN P+ CAGCG I DRFLL ++D YWH CLKC CC +LGE+
Sbjct: 2 VNNRISESTTTAVSNNGSPPKACAGCGGKIADRFLLYSMDRYWHTRCLKCSCCQAQLGEI 61
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
G++ YTK+ +ILC+ DY+RLFG++G C AC + IPA EMVMRA+ +VYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRN 121
Query: 139 R 139
R
Sbjct: 122 R 122
>gi|148224772|ref|NP_001079179.1| LIM domain transcription factor LMO4-A [Xenopus laevis]
gi|82211818|sp|Q8AW92.1|LMO4A_XENLA RecName: Full=LIM domain transcription factor LMO4-A; AltName:
Full=LIM domain only protein 4-A; Short=LMO-4-A;
AltName: Full=Xlmo4
gi|26986407|emb|CAD54077.1| lmo4 protein [Xenopus laevis]
gi|83318438|gb|AAI08586.1| Lmo4-A protein [Xenopus laevis]
Length = 171
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 85/121 (70%)
Query: 19 VKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
V + T AV +N P+ CAGCG I DRFLL ++D YWH CLKC CC +LGE+
Sbjct: 2 VNNRSSESTTTAVSSNGSPPKACAGCGGKIGDRFLLYSMDRYWHTRCLKCSCCQAQLGEI 61
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
G++ YTK+ +ILC+ DY+RLFG++G C AC + IPA EMVMRA+ +VYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRN 121
Query: 139 R 139
R
Sbjct: 122 R 122
>gi|62751505|ref|NP_001015822.1| LIM domain transcription factor LMO4.1 [Xenopus (Silurana)
tropicalis]
gi|82194932|sp|Q5FVB2.1|LMO41_XENTR RecName: Full=LIM domain transcription factor LMO4.1; AltName:
Full=LIM domain only protein 4.1; Short=LMO-4.1
gi|58475879|gb|AAH90104.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 167
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 86/121 (71%)
Query: 19 VKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
V + T AV +N P+ CAGCG I DRFLL +++ YWH CLKC CC +LGE+
Sbjct: 2 VNNRVTESTTTAVSSNGGPPKACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEI 61
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
G++ YTK+ +ILC+ DY+RLFGS+G C+AC + IPA EMVMRA+ +VYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRN 121
Query: 139 R 139
R
Sbjct: 122 R 122
>gi|410920794|ref|XP_003973868.1| PREDICTED: LIM domain transcription factor LMO4-like [Takifugu
rubripes]
Length = 271
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 83/116 (71%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q AV + + CAGCG I DRFLL ++ YWH CLKC CC +LGE+G++ Y
Sbjct: 6 GSSQPPAVGTGSLSWKRCAGCGGKIADRFLLYTMESYWHSRCLKCSCCQAQLGEIGTSCY 65
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|348535208|ref|XP_003455093.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Oreochromis
niloticus]
Length = 261
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%)
Query: 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
VP P+ CAGCG I DRFLL +++ YWH CLKC CC +LG++G+T Y+K +IL
Sbjct: 6 VPGVPSDPRSCAGCGGKIADRFLLFSMERYWHTRCLKCSCCQAQLGDIGTTCYSKGGMIL 65
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
C+ DY+RLFG +G C+ACS+ IPA EMVMRA+ NVYHL+CF+C C +R
Sbjct: 66 CRSDYIRLFGHSGACSACSQSIPANEMVMRAQGNVYHLKCFSCATCRNR 114
>gi|49900550|gb|AAH76053.1| LIM domain only 4, like [Danio rerio]
Length = 165
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ Y
Sbjct: 6 GSAQPPPVGAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCY 65
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|47210680|emb|CAF90424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 83/116 (71%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q AV + + CAGCG I DRFLL ++ YWH CLKC CC +LGE+G++ Y
Sbjct: 7 GSSQPPAVGTGSLSWKRCAGCGGKIADRFLLYTMESYWHSRCLKCSCCQAQLGEIGTSCY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 122
>gi|348513565|ref|XP_003444312.1| PREDICTED: LIM domain transcription factor LMO4-like [Oreochromis
niloticus]
Length = 176
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 82/116 (70%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q V + + CAGCG I DRFLL +D YWH CLKC CC +LGE+G++ Y
Sbjct: 6 GSSQPPPVGTGSLSWKRCAGCGGKIADRFLLYTMDSYWHSRCLKCSCCQAQLGEIGTSCY 65
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|334321736|ref|XP_001364235.2| PREDICTED: LIM domain transcription factor LMO4-like [Monodelphis
domestica]
Length = 225
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V A + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGALSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|351710230|gb|EHB13149.1| LIM domain only protein 3 [Heterocephalus glaber]
Length = 163
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 82/120 (68%), Gaps = 18/120 (15%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT-----KANLILCK 92
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTL L++
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLLACMQTRIQQLVILP 69
Query: 93 R-------------DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
R + LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 RMLKLLVFGINQYTSFCLLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 129
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 95 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 153
Query: 100 GSTGY 104
GY
Sbjct: 154 MKEGY 158
>gi|327270759|ref|XP_003220156.1| PREDICTED: LIM domain transcription factor LMO4-like [Anolis
carolinensis]
gi|387019075|gb|AFJ51655.1| LIM domain transcription factor LMO4-like [Crotalus adamanteus]
Length = 165
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 83/115 (72%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ YT
Sbjct: 7 SSQPPPVTSGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|443704461|gb|ELU01523.1| hypothetical protein CAPTEDRAFT_46615, partial [Capitella teleta]
Length = 122
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 79/101 (78%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
++CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ +TK+ +ILCKRDY+RL
Sbjct: 1 KQCAGCGGKIIDRFLLHAMDRYWHTGCLKCSCCQAQLGELGTSCFTKSGMILCKRDYIRL 60
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FGSTG CAACS+ IPA E VM+A+ NVYH+ CF C C+ R
Sbjct: 61 FGSTGTCAACSQAIPASEFVMKAQGNVYHVHCFTCVTCHSR 101
>gi|224057485|ref|XP_002195837.1| PREDICTED: LIM domain transcription factor LMO4 [Taeniopygia
guttata]
Length = 165
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 83/116 (71%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ Y
Sbjct: 6 GSAQPPPVSAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCY 65
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|45383886|ref|NP_989443.1| LIM domain transcription factor LMO4 [Gallus gallus]
gi|22347822|gb|AAM95988.1| LIM domain only 4 protein [Gallus gallus]
Length = 165
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 83/116 (71%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ Y
Sbjct: 6 GSAQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCY 65
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|351705454|gb|EHB08373.1| LIM domain transcription factor LMO4 [Heterocephalus glaber]
Length = 214
Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 86/130 (66%)
Query: 10 LKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
L +R + + Q V + + CAGCG I DRFLL A+D YWH CLKC
Sbjct: 23 LSPSRPLQTMVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCS 82
Query: 70 CCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLE 129
CC +LG++G++ YTK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+
Sbjct: 83 CCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLK 142
Query: 130 CFACQQCNHR 139
CF C C +R
Sbjct: 143 CFTCSTCRNR 152
>gi|284795255|ref|NP_001087890.2| LIM domain only 4, gene 1 [Xenopus laevis]
Length = 165
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ YT
Sbjct: 7 SSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|348586684|ref|XP_003479098.1| PREDICTED: LIM domain transcription factor LMO4-like [Cavia
porcellus]
Length = 236
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|52345752|ref|NP_001004922.1| LIM domain transcription factor LMO4.2 [Xenopus (Silurana)
tropicalis]
gi|82183496|sp|Q6DJ06.1|LMO42_XENTR RecName: Full=LIM domain transcription factor LMO4.2; AltName:
Full=LIM domain only protein 4.2; Short=LMO-4.2
gi|49522594|gb|AAH75379.1| MGC89099 protein [Xenopus (Silurana) tropicalis]
gi|89268694|emb|CAJ82708.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 165
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ YT
Sbjct: 7 SSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|47086665|ref|NP_997854.1| LIM domain transcription factor LMO4 [Danio rerio]
gi|22652064|gb|AAN03596.1|AF398515_1 LIM-only 4 [Danio rerio]
Length = 165
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 82/116 (70%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G+ Y
Sbjct: 6 GSAQPPPVGAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTFCY 65
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TK+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 TKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|395530587|ref|XP_003767372.1| PREDICTED: LIM domain transcription factor LMO4 [Sarcophilus
harrisii]
Length = 165
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V A + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGALSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|431897053|gb|ELK06317.1| LIM domain transcription factor LMO4 [Pteropus alecto]
Length = 214
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|417396903|gb|JAA45485.1| Putative lim domain transcription factor lmo4 [Desmodus rotundus]
Length = 197
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 STQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|432107070|gb|ELK32502.1| LIM domain transcription factor LMO4 [Myotis davidii]
Length = 198
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|440912098|gb|ELR61697.1| LIM domain transcription factor LMO4, partial [Bos grunniens mutus]
Length = 165
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 8 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 67
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 68 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 122
>gi|281338511|gb|EFB14095.1| hypothetical protein PANDA_006061 [Ailuropoda melanoleuca]
Length = 164
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|326670376|ref|XP_002663297.2| PREDICTED: LIM domain transcription factor LMO4.2 [Danio rerio]
Length = 195
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 81/109 (74%)
Query: 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
VP + CAGCG I+DRFLL +++ YWH CLKC CC +LGE+GST Y+K+ +IL
Sbjct: 6 VPGGVCVSRSCAGCGGRISDRFLLFSMERYWHSRCLKCSCCQAQLGEIGSTCYSKSGMIL 65
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
C+ DY+RLFG TG C+AC + IPA EMVMRA+ NVYHL+CF+C C ++
Sbjct: 66 CRTDYIRLFGHTGACSACGQSIPASEMVMRAQGNVYHLKCFSCATCRNQ 114
>gi|355558146|gb|EHH14926.1| hypothetical protein EGK_00938, partial [Macaca mulatta]
gi|355745433|gb|EHH50058.1| hypothetical protein EGM_00823, partial [Macaca fascicularis]
Length = 165
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|345783372|ref|XP_851277.2| PREDICTED: uncharacterized protein LOC609006 [Canis lupus
familiaris]
Length = 756
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/96 (61%), Positives = 68/96 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 628 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 687
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 688 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAAC 723
>gi|123995901|gb|ABM85552.1| LIM domain only 4 [synthetic construct]
Length = 165
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|355699533|gb|AES01159.1| LIM domain only 4 [Mustela putorius furo]
Length = 163
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 6 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 65
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 120
>gi|158258593|dbj|BAF85267.1| unnamed protein product [Homo sapiens]
Length = 165
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|5803072|ref|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapiens]
gi|6754560|ref|NP_034853.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|57527555|ref|NP_001009708.1| LIM domain transcription factor LMO4 [Rattus norvegicus]
gi|77736447|ref|NP_001029923.1| LIM domain transcription factor LMO4 [Bos taurus]
gi|162951803|ref|NP_001106156.1| LIM domain transcription factor LMO4 [Sus scrofa]
gi|239937456|ref|NP_001155241.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|239937458|ref|NP_001155242.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|383872290|ref|NP_001244770.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|57088261|ref|XP_537086.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Canis
lupus familiaris]
gi|73959644|ref|XP_867313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Canis
lupus familiaris]
gi|114557534|ref|XP_001144748.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Pan
troglodytes]
gi|114557536|ref|XP_001144677.1| PREDICTED: LIM domain transcription factor LMO4 isoform 5 [Pan
troglodytes]
gi|149709390|ref|XP_001495634.1| PREDICTED: LIM domain transcription factor LMO4-like [Equus
caballus]
gi|291398567|ref|XP_002715923.1| PREDICTED: LIM domain only 4 isoform 1 [Oryctolagus cuniculus]
gi|291398569|ref|XP_002715924.1| PREDICTED: LIM domain only 4 isoform 2 [Oryctolagus cuniculus]
gi|296208425|ref|XP_002751086.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 1
[Callithrix jacchus]
gi|296208427|ref|XP_002751087.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 2
[Callithrix jacchus]
gi|297664521|ref|XP_002810690.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Pongo
abelii]
gi|297664523|ref|XP_002810691.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Pongo
abelii]
gi|301764579|ref|XP_002917710.1| PREDICTED: LIM domain transcription factor LMO4-like [Ailuropoda
melanoleuca]
gi|332221831|ref|XP_003260067.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Nomascus
leucogenys]
gi|332221833|ref|XP_003260068.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Nomascus
leucogenys]
gi|344278752|ref|XP_003411156.1| PREDICTED: LIM domain transcription factor LMO4-like [Loxodonta
africana]
gi|345801722|ref|XP_003434840.1| PREDICTED: LIM domain transcription factor LMO4 [Canis lupus
familiaris]
gi|395821809|ref|XP_003784224.1| PREDICTED: LIM domain transcription factor LMO4 [Otolemur
garnettii]
gi|397467290|ref|XP_003805357.1| PREDICTED: LIM domain transcription factor LMO4 [Pan paniscus]
gi|402855150|ref|XP_003892201.1| PREDICTED: LIM domain transcription factor LMO4 [Papio anubis]
gi|403305527|ref|XP_003943313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403305529|ref|XP_003943314.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|410967649|ref|XP_003990330.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Felis
catus]
gi|410967651|ref|XP_003990331.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Felis
catus]
gi|410967653|ref|XP_003990332.1| PREDICTED: LIM domain transcription factor LMO4 isoform 3 [Felis
catus]
gi|426215916|ref|XP_004002215.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Ovis
aries]
gi|426215918|ref|XP_004002216.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Ovis
aries]
gi|426330255|ref|XP_004026136.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Gorilla
gorilla gorilla]
gi|426330257|ref|XP_004026137.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Gorilla
gorilla gorilla]
gi|48428992|sp|P61968.1|LMO4_HUMAN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|48428993|sp|P61969.1|LMO4_MOUSE RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|119371422|sp|Q3SWZ8.1|LMO4_BOVIN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=LIM domain only protein 4; Short=LMO-4
gi|1914877|gb|AAB51073.1|AAB51073 breast tumor autoantigen [Homo sapiens]
gi|3702854|gb|AAC62958.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|3983077|gb|AAC83789.1| LIM only 4 [Mus musculus]
gi|4063896|gb|AAC98510.1| nuclear LIM-only 4 protein [Mus musculus]
gi|13097522|gb|AAH03488.1| Lmo4 protein [Mus musculus]
gi|13097819|gb|AAH03600.1| LIM domain only 4 [Homo sapiens]
gi|17389229|gb|AAH17673.1| LIM domain only 4 [Homo sapiens]
gi|26348597|dbj|BAC37938.1| unnamed protein product [Mus musculus]
gi|37537228|gb|AAH10278.3| LIM domain only 4 [Mus musculus]
gi|41351121|gb|AAH65818.1| LMO4 protein [Homo sapiens]
gi|56388757|gb|AAH87700.1| LIM domain only 4 [Rattus norvegicus]
gi|72679867|gb|AAI00383.1| Lmo4 protein [Mus musculus]
gi|74198060|dbj|BAE35210.1| unnamed protein product [Mus musculus]
gi|74209791|dbj|BAE23609.1| unnamed protein product [Mus musculus]
gi|74356507|gb|AAI04583.1| LIM domain only 4 [Bos taurus]
gi|119593574|gb|EAW73168.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|119593575|gb|EAW73169.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|123981088|gb|ABM82373.1| LIM domain only 4 [synthetic construct]
gi|148680084|gb|EDL12031.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680085|gb|EDL12032.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680086|gb|EDL12033.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|149026128|gb|EDL82371.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026129|gb|EDL82372.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026130|gb|EDL82373.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|160858222|dbj|BAF93844.1| LIM domain only 4 [Sus scrofa]
gi|168275774|dbj|BAG10607.1| LIM domain transcription factor LMO4 [synthetic construct]
gi|296489301|tpg|DAA31414.1| TPA: LIM domain transcription factor LMO4 [Bos taurus]
gi|380785535|gb|AFE64643.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|383411513|gb|AFH28970.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|384944322|gb|AFI35766.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|410208742|gb|JAA01590.1| LIM domain only 4 [Pan troglodytes]
gi|410247022|gb|JAA11478.1| LIM domain only 4 [Pan troglodytes]
gi|410297806|gb|JAA27503.1| LIM domain only 4 [Pan troglodytes]
gi|410340611|gb|JAA39252.1| LIM domain only 4 [Pan troglodytes]
gi|410340613|gb|JAA39253.1| LIM domain only 4 [Pan troglodytes]
Length = 165
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|345306388|ref|XP_001506631.2| PREDICTED: LIM domain transcription factor LMO4-like
[Ornithorhynchus anatinus]
Length = 175
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SAQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>gi|29469078|ref|NP_817093.1| LIM domain only 4a [Danio rerio]
gi|19879278|gb|AAK26166.1| LIM only 4 protein [Danio rerio]
gi|28277424|gb|AAH45835.1| LIM domain only 4 [Danio rerio]
gi|182890324|gb|AAI64026.1| Lmo4 protein [Danio rerio]
Length = 167
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Query: 30 AVPNNAQGP-QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANL 88
AV + G + CAGCG I+DRFLL ++D YWH CLKC CC +LGE+GST ++K +
Sbjct: 12 AVTGGSGGAVRSCAGCGGRISDRFLLFSMDRYWHTRCLKCSCCQAQLGEIGSTCFSKGGM 71
Query: 89 ILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
ILC+ DY+RLFG +G C+AC + IPA EMVMRA+ NVYHL+CF C C +R
Sbjct: 72 ILCRNDYIRLFGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNR 122
>gi|311248009|ref|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825 [Sus scrofa]
Length = 476
Score = 139 bits (349), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/96 (61%), Positives = 68/96 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 348 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 407
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 408 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAAC 443
>gi|21706633|gb|AAH34128.1| Lmo3 protein, partial [Mus musculus]
Length = 112
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 70/78 (89%)
Query: 62 HEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRA 121
H LKC CCDCRLGEVGSTLYTKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA
Sbjct: 1 HASGLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRA 60
Query: 122 RNNVYHLECFACQQCNHR 139
++NVYHL+CFACQ CN R
Sbjct: 61 KDNVYHLDCFACQLCNQR 78
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 44 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 102
Query: 100 GSTGY 104
GY
Sbjct: 103 MKEGY 107
>gi|156373115|ref|XP_001629379.1| predicted protein [Nematostella vectensis]
gi|156216378|gb|EDO37316.1| predicted protein [Nematostella vectensis]
Length = 153
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 82/114 (71%)
Query: 26 QQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTK 85
QQ + A + CAGCG+ I DRFLL ALD YWH +CLKC CC+ RLGE+G++ Y+K
Sbjct: 4 QQLTSQSQVAASMRVCAGCGEKIIDRFLLLALDQYWHVNCLKCSCCEARLGEIGTSCYSK 63
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ILCK DY+RL+G++G CA C+K+IPA E+VM+ VYHL CF C C+++
Sbjct: 64 GGMILCKTDYVRLYGNSGACAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQ 117
>gi|225708480|gb|ACO10086.1| LIM domain transcription factor LMO4 [Osmerus mordax]
Length = 159
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 79/109 (72%)
Query: 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
P P+ CAGCG I DRFLL +++ YWH CLKC CC +LG++G++ Y+K +IL
Sbjct: 6 APCGGASPRSCAGCGGKIGDRFLLYSMERYWHTRCLKCSCCHAQLGDIGTSCYSKGGMIL 65
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
C+ DY+RLFG +G C+AC + IPA EMVMRA+ NVYHL+CF+C C +R
Sbjct: 66 CRSDYIRLFGHSGACSACGQSIPANEMVMRAQGNVYHLKCFSCATCRNR 114
>gi|213514790|ref|NP_001133458.1| LIM domain transcription factor LMO4.1 [Salmo salar]
gi|209154084|gb|ACI33274.1| LIM domain transcription factor LMO4.1 [Salmo salar]
Length = 168
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 76/101 (75%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL +++ YWH CLKC CC +LGE+G+T Y+K +ILCK DY+RL
Sbjct: 23 RSCAGCGGRIADRFLLFSMERYWHTRCLKCSCCHAQLGEIGTTCYSKGGMILCKNDYIRL 82
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG +G C+AC + IPA EMVMRA+ NVYHL+CF C C +R
Sbjct: 83 FGHSGACSACGQSIPASEMVMRAQGNVYHLKCFTCATCRNR 123
>gi|118137504|pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
gi|118137505|pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 77/101 (76%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL A+D YWH CLKC C +LG++G++ YTK+ +ILC+ DY+RL
Sbjct: 4 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 63
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 64 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 104
>gi|56553691|pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/101 (57%), Positives = 77/101 (76%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL A+D YWH CLKC C +LG++G++ YTK+ +ILC+ DY+RL
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 66 FGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 106
>gi|291240630|ref|XP_002740222.1| PREDICTED: LIM domain only 4-like [Saccoglossus kowalevskii]
Length = 180
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 78/101 (77%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL ALD YWH CLKC CC +LGE+G + ++K +ILCK+DYLRL
Sbjct: 41 RSCAGCGVKIMDRFLLHALDRYWHTGCLKCTCCGAQLGELGPSCFSKGGMILCKKDYLRL 100
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG++G C++C + IPA E+VMRA+ NVYH +CFAC C+++
Sbjct: 101 FGNSGACSSCGQSIPASELVMRAQGNVYHQKCFACTSCHNQ 141
>gi|441646887|ref|XP_003254671.2| PREDICTED: uncharacterized protein LOC100595328 [Nomascus
leucogenys]
Length = 382
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 229 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 284
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 285 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 344
Query: 132 ACQQCN 137
C C
Sbjct: 345 KCAACQ 350
>gi|344280810|ref|XP_003412175.1| PREDICTED: hypothetical protein LOC100673779 [Loxodonta africana]
Length = 339
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 186 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 241
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 242 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 301
Query: 132 ACQQCN 137
C C
Sbjct: 302 KCAACQ 307
>gi|348556199|ref|XP_003463910.1| PREDICTED: hypothetical protein LOC100733380 [Cavia porcellus]
Length = 381
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 228 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 283
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 284 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 343
Query: 132 ACQQCN 137
C C
Sbjct: 344 KCAACQ 349
>gi|260793702|ref|XP_002591850.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
gi|229277061|gb|EEN47861.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
Length = 329
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 87/140 (62%), Gaps = 8/140 (5%)
Query: 8 EHLKINRMSMDVKTQQGAQQTKAVPNNAQGP--------QECAGCGKHITDRFLLKALDM 59
E K M + +Q+ VP+ G ++CAGCG I DRFLL ALD
Sbjct: 24 ESKKAAGMEQQPGGFESSQRPGVVPSRGGGGPMTDNGSVKKCAGCGGKIGDRFLLHALDR 83
Query: 60 YWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVM 119
YWH CLKC CC +LG++GS+ ++KA +ILCK DY+RLFG++G C AC + IPA E VM
Sbjct: 84 YWHVACLKCSCCQAQLGDIGSSCFSKAGMILCKTDYIRLFGASGACNACGQSIPANEFVM 143
Query: 120 RARNNVYHLECFACQQCNHR 139
R + NVYH++CF C C ++
Sbjct: 144 RTQGNVYHVKCFTCFTCRYQ 163
>gi|395816191|ref|XP_003781591.1| PREDICTED: uncharacterized protein LOC100957884 [Otolemur
garnettii]
Length = 361
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 208 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 263
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 264 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 323
Query: 132 ACQQCN 137
C C
Sbjct: 324 KCAACQ 329
>gi|426367960|ref|XP_004050987.1| PREDICTED: uncharacterized protein LOC101139857 [Gorilla gorilla
gorilla]
Length = 362
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 209 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 264
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 265 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 324
Query: 132 ACQQCN 137
C C
Sbjct: 325 KCAACQ 330
>gi|390345093|ref|XP_787486.3| PREDICTED: LIM domain transcription factor LMO4-B-like
[Strongylocentrotus purpuratus]
Length = 208
Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 75/97 (77%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I DRFLL A+D +WH CLKC CC+ +LG++G + ++K +ILCK+DYLR+FG
Sbjct: 59 CAGCGGKIIDRFLLHAVDRFWHTGCLKCSCCNVQLGDIGHSCFSKGGMILCKKDYLRIFG 118
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
++G C AC + IPA E+VMR +N VYHL+CFAC C+
Sbjct: 119 TSGACTACGQQIPANELVMRTQNRVYHLKCFACSSCH 155
>gi|348505324|ref|XP_003440211.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oreochromis
niloticus]
Length = 198
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Query: 28 TKAVPNNAQGP--QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTK 85
T AV + G + CAGCG I DRFLL +++ YWH CLKC CC +LGE ST Y+K
Sbjct: 10 TVAVMGSGGGTAGRSCAGCGGRIADRFLLFSMERYWHTRCLKCSCCHAQLGEYSSTCYSK 69
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ILCK DY+RLFG +G C+AC + IPA EMVMRA+ +VYHL+CF C C +R
Sbjct: 70 GGMILCKNDYIRLFGHSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRNR 123
>gi|215272415|ref|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus]
Length = 228
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 75 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 130
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 131 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 190
Query: 132 ACQQCN 137
C C
Sbjct: 191 KCAACQ 196
>gi|58332172|ref|NP_001011238.1| rhombotin-2 [Xenopus (Silurana) tropicalis]
gi|82195676|sp|Q5M8V8.1|RBTN2_XENTR RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2
gi|56556544|gb|AAH87809.1| LIM domain only 2 (rhombotin-like 1) [Xenopus (Silurana)
tropicalis]
Length = 158
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D T + + +P + C GC + I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PTDEPVDEVLQIPPSLL---TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|215272418|ref|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus]
gi|348605100|ref|NP_001032435.2| rhombotin-2 isoform 1 [Rattus norvegicus]
Length = 220
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 67 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 122
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 123 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 182
Query: 132 ACQQCN 137
C C
Sbjct: 183 KCAACQ 188
>gi|403255494|ref|XP_003920463.1| PREDICTED: rhombotin-2, partial [Saimiri boliviensis boliviensis]
Length = 227
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 74 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 130 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 189
Query: 132 ACQQCN 137
C C
Sbjct: 190 KCAACQ 195
>gi|297688971|ref|XP_002821941.1| PREDICTED: rhombotin-2 [Pongo abelii]
Length = 227
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 74 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 130 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 189
Query: 132 ACQQCN 137
C C
Sbjct: 190 KCAACQ 195
>gi|388454755|ref|NP_001253136.1| rhombotin-2 [Macaca mulatta]
gi|387539650|gb|AFJ70452.1| rhombotin-2 isoform 1 [Macaca mulatta]
Length = 222
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 69 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 124
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 125 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 184
Query: 132 ACQQCN 137
C C
Sbjct: 185 KCAACQ 190
>gi|402893865|ref|XP_003910103.1| PREDICTED: rhombotin-2 [Papio anubis]
Length = 222
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 69 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 124
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 125 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 184
Query: 132 ACQQCN 137
C C
Sbjct: 185 KCAACQ 190
>gi|214832074|ref|NP_005565.2| rhombotin-2 isoform 1 [Homo sapiens]
gi|119588588|gb|EAW68182.1| LIM domain only 2 (rhombotin-like 1), isoform CRA_b [Homo sapiens]
Length = 227
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 74 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 130 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 189
Query: 132 ACQQCN 137
C C
Sbjct: 190 KCAACQ 195
>gi|410044983|ref|XP_001145605.2| PREDICTED: rhombotin-2 isoform 5 [Pan troglodytes]
Length = 226
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 73 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 128
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 129 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 188
Query: 132 ACQQCN 137
C C
Sbjct: 189 KCAACQ 194
>gi|238231589|ref|NP_001153980.1| Rhombotin-2 [Oncorhynchus mykiss]
gi|225703168|gb|ACO07430.1| Rhombotin-2 [Oncorhynchus mykiss]
Length = 159
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R +M+ + + + P+ C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 5 IERKTMEANEEPVDEVLQMAPSLLN----CGGCQQSIGDRFFLKAIEKYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQC 136
C C
Sbjct: 121 KCAAC 125
>gi|432861309|ref|XP_004069604.1| PREDICTED: rhombotin-2-like [Oryzias latipes]
Length = 160
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 80/125 (64%), Gaps = 5/125 (4%)
Query: 16 SMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
+++ KT + +++ V Q P C GC ++I DRF LKA++ YWHEDCL C C
Sbjct: 4 TIERKTLEASEE--PVDEVLQMPPSLLTCGGCQQNIGDRFFLKAIEQYWHEDCLSCDLCG 61
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFA 132
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 62 CRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFK 121
Query: 133 CQQCN 137
C C
Sbjct: 122 CAACQ 126
>gi|410046368|ref|XP_003952176.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
Length = 167
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 81/124 (65%), Gaps = 22/124 (17%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG----------------EVGST 81
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG E+G
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGIC 69
Query: 82 LYTKANLILCKRDYLR------LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
+ ++ L D+ + LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ
Sbjct: 70 VTLESPLPFVITDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQL 129
Query: 136 CNHR 139
CN R
Sbjct: 130 CNQR 133
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 99 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 157
Query: 100 GSTGY 104
GY
Sbjct: 158 MKEGY 162
>gi|380029439|ref|XP_003698380.1| PREDICTED: uncharacterized protein LOC100872944 [Apis florea]
Length = 478
Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/108 (50%), Positives = 74/108 (68%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P+ G Q+CAGCG I +R+LL A+D YWH CLKC C L E+G + YT++ +ILC
Sbjct: 246 PSGPTGIQQCAGCGGQIVERWLLLAMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMILC 305
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K DY R+FGS+G CA C IPA E+VMRA +V+H +CF C +C ++
Sbjct: 306 KSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQ 353
>gi|213514626|ref|NP_001133485.1| Rhombotin-2 [Salmo salar]
gi|209154196|gb|ACI33330.1| Rhombotin-2 [Salmo salar]
Length = 159
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
MS ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 1 MSSAIERKTMEANEEPVDEVLQMPPSLLNCGGCQQSIGDRFFLKAIEKYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQC 136
C C
Sbjct: 121 KCAAC 125
>gi|348512977|ref|XP_003444019.1| PREDICTED: rhombotin-2-like [Oreochromis niloticus]
Length = 160
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 79/125 (63%), Gaps = 5/125 (4%)
Query: 16 SMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
+++ KT + +++ V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 4 TIERKTLEASEE--PVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCG 61
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFA 132
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 62 CRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFK 121
Query: 133 CQQCN 137
C C
Sbjct: 122 CAACQ 126
>gi|345305572|ref|XP_001507645.2| PREDICTED: hypothetical protein LOC100076235 [Ornithorhynchus
anatinus]
Length = 397
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 269 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 328
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 329 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAVCQ 365
>gi|301764242|ref|XP_002917543.1| PREDICTED: rhombotin-2-like, partial [Ailuropoda melanoleuca]
Length = 184
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 31 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 86
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 87 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 146
Query: 132 ACQQCN 137
C C
Sbjct: 147 KCAACQ 152
>gi|410903283|ref|XP_003965123.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Takifugu
rubripes]
Length = 233
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 75/110 (68%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+V G + CAGCG ITDRFLL +++ YWH CL+C CC LGE + Y++ +I
Sbjct: 12 SVVGGCSGARSCAGCGGRITDRFLLFSMERYWHTRCLRCSCCHAELGEFSRSCYSRGGMI 71
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LCK DY+RLFG TG C+AC + IP EMVMRA+ +VYHL+CF C C +R
Sbjct: 72 LCKDDYIRLFGHTGACSACGQTIPPSEMVMRAQGSVYHLKCFTCATCRNR 121
>gi|225707862|gb|ACO09777.1| Rhombotin-2 [Osmerus mordax]
Length = 159
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQ---ECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
MS ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 1 MSSAIERKTLEANEEPVDEVLQMPPALLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|224050494|ref|XP_002188677.1| PREDICTED: rhombotin-2 [Taeniopygia guttata]
Length = 158
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|45383592|ref|NP_989602.1| rhombotin-2 [Gallus gallus]
gi|214832121|ref|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens]
gi|214832219|ref|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens]
gi|132533|sp|P25791.1|RBTN2_HUMAN RecName: Full=Rhombotin-2; AltName: Full=Cysteine-rich protein
TTG-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; AltName: Full=T-cell translocation protein
2
gi|18656901|gb|AAL78036.1|AF468789_1 LIM domain-containing transcription factor [Gallus gallus]
gi|37481|emb|CAA43430.1| TTG-2a/RBTN-2a [Homo sapiens]
gi|21706499|gb|AAH34041.1| LMO2 protein [Homo sapiens]
gi|23272668|gb|AAH35607.1| LMO2 protein [Homo sapiens]
gi|27502791|gb|AAH42426.1| LMO2 protein [Homo sapiens]
gi|90085449|dbj|BAE91465.1| unnamed protein product [Macaca fascicularis]
gi|123983036|gb|ABM83259.1| LIM domain only 2 (rhombotin-like 1) [synthetic construct]
gi|123997725|gb|ABM86464.1| LIM domain only 2 (rhombotin-like 1) [synthetic construct]
gi|208966668|dbj|BAG73348.1| LIM domain only 2 [synthetic construct]
gi|380783195|gb|AFE63473.1| rhombotin-2 isoform 1 [Macaca mulatta]
gi|431915694|gb|ELK16027.1| Rhombotin-2 [Pteropus alecto]
Length = 158
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|397491241|ref|XP_003816581.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
Length = 167
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 81/124 (65%), Gaps = 22/124 (17%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG----------------EVGST 81
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG E+G
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGIC 69
Query: 82 LYTKANLILCKRDYLR------LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
+ ++ L D+ + LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ
Sbjct: 70 VTLESPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQL 129
Query: 136 CNHR 139
CN R
Sbjct: 130 CNQR 133
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 99 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 157
Query: 100 GSTGY 104
GY
Sbjct: 158 MKEGY 162
>gi|215272297|ref|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus]
gi|215272420|ref|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus]
gi|348605102|ref|NP_001231708.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|348605104|ref|NP_001231709.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|348605106|ref|NP_001231710.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|132534|sp|P25801.1|RBTN2_MOUSE RecName: Full=Rhombotin-2; AltName: Full=Cysteine-rich protein
TTG-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; AltName: Full=T-cell translocation protein
2
gi|200749|gb|AAA40054.1| rhom-2 [Mus musculus]
gi|12850763|dbj|BAB28844.1| unnamed protein product [Mus musculus]
gi|34785560|gb|AAH57880.1| LIM domain only 2 [Mus musculus]
gi|76779330|gb|AAI05773.1| LIM domain only 2 [Rattus norvegicus]
gi|149022788|gb|EDL79682.1| LIM domain only 2 [Rattus norvegicus]
Length = 158
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|148695762|gb|EDL27709.1| LIM domain only 2 [Mus musculus]
Length = 155
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 2 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 57
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 58 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 117
Query: 132 ACQQCN 137
C C
Sbjct: 118 KCAACQ 123
>gi|426225424|ref|XP_004006866.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
Length = 165
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 80/122 (65%), Gaps = 20/122 (16%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGE-----------------VGS 80
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGE + +
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCRVRMHAAHTDVRIYT 69
Query: 81 TLYTKANLILC---KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
L L++ + L LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN
Sbjct: 70 ALECAPTLVIIDFYQITILWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCN 129
Query: 138 HR 139
R
Sbjct: 130 QR 131
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 97 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 155
Query: 100 GSTGY 104
GY
Sbjct: 156 MKEGY 160
>gi|410908487|ref|XP_003967722.1| PREDICTED: rhombotin-2-like [Takifugu rubripes]
Length = 160
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
M+ ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 1 MASTIERKTLETNEEPVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQC 136
C C
Sbjct: 121 KCAAC 125
>gi|18858983|ref|NP_571186.1| rhombotin-2 [Danio rerio]
gi|82223263|sp|Q9PTJ3.1|RBTN2_DANRE RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; Short=zlmo2
gi|6049849|gb|AAF02779.1| LMO2 protein [Danio rerio]
Length = 159
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
M+ ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 1 MASTIERKTLEANEEPVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|351708418|gb|EHB11337.1| Rhombotin-2 [Heterocephalus glaber]
Length = 227
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 7 LEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHE 63
+E I + + ++ Q+ + V Q P C GC ++I DR+ LKA+D YWHE
Sbjct: 62 VEAFGIPDDPLGPQVERLRQRGEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHE 121
Query: 64 DCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARN 123
DCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++
Sbjct: 122 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKD 181
Query: 124 NVYHLECFACQQCN 137
VYHLECF C C
Sbjct: 182 KVYHLECFKCAACQ 195
>gi|62202595|gb|AAH93136.1| Lmo2 protein [Danio rerio]
Length = 159
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
M+ ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 1 MASTIERKTLEANEEPVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|115496606|ref|NP_001069820.1| rhombotin-2 [Bos taurus]
gi|119361443|sp|Q1LZ94.1|RBTN2_BOVIN RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2
gi|94534785|gb|AAI16135.1| LIM domain only 2 (rhombotin-like 1) [Bos taurus]
gi|296479728|tpg|DAA21843.1| TPA: rhombotin-2 [Bos taurus]
Length = 158
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D + + + P+ C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLDPSEEPVDEVLQMPPSLLT----CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|441669898|ref|XP_004092149.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
Length = 167
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 80/124 (64%), Gaps = 22/124 (17%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGE----------------VGST 81
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGE +G
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGIY 69
Query: 82 LYTKANLILCKRDYLR------LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
+ + L D+ + LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ
Sbjct: 70 VTLEWPLPFIIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQL 129
Query: 136 CNHR 139
CN R
Sbjct: 130 CNQR 133
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 99 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 157
Query: 100 GSTGY 104
GY
Sbjct: 158 MKEGY 162
>gi|156375130|ref|XP_001629935.1| predicted protein [Nematostella vectensis]
gi|156216946|gb|EDO37872.1| predicted protein [Nematostella vectensis]
Length = 125
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 73/99 (73%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA CG I +FLL+ALD +WHE+CLKC C L E+G Y + +LILCKRDY+R+FG
Sbjct: 2 CAQCGNGIQSQFLLRALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+TG C+ C K IP EMVMRAR +VYHL+CFACQ C HR
Sbjct: 62 TTGICSFCFKTIPPLEMVMRARQHVYHLDCFACQVCRHR 100
>gi|343790987|ref|NP_001230542.1| LIM domain only protein 3 isoform 4 [Homo sapiens]
gi|426371886|ref|XP_004052871.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|194378890|dbj|BAG57996.1| unnamed protein product [Homo sapiens]
Length = 167
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 80/124 (64%), Gaps = 22/124 (17%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGE----------------VGST 81
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGE +G
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGIC 69
Query: 82 LYTKANLILCKRDYLR------LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
+ + L D+ + LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ
Sbjct: 70 VTLEWPLPFVIIDFSQQITIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQL 129
Query: 136 CNHR 139
CN R
Sbjct: 130 CNQR 133
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 99 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 157
Query: 100 GSTGY 104
GY
Sbjct: 158 MKEGY 162
>gi|327280945|ref|XP_003225211.1| PREDICTED: rhombotin-2-like [Anolis carolinensis]
Length = 158
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
MS ++ + + V Q P C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 1 MSSAIERKSLEPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|37779048|gb|AAP20184.1| LIM domain only-2 [Pagrus major]
Length = 127
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
M+ ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 4 MTSTIERKTLEANEEPVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLC 63
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 64 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 123
Query: 132 AC 133
C
Sbjct: 124 KC 125
>gi|47224482|emb|CAG08732.1| unnamed protein product [Tetraodon nigroviridis]
Length = 153
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 67/97 (69%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I DRF LKA++ YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 25 CGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I AFEM MR R+ VYHLECF C C
Sbjct: 85 QDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQ 121
>gi|395543649|ref|XP_003773727.1| PREDICTED: rhombotin-2 [Sarcophilus harrisii]
Length = 208
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 74/125 (59%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
N + + +Q + V C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 52 NVLHFVARNKQFGEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCG 111
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFA 132
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR + VYHLECF
Sbjct: 112 CRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKEKVYHLECFK 171
Query: 133 CQQCN 137
C C
Sbjct: 172 CAACQ 176
>gi|260820588|ref|XP_002605616.1| hypothetical protein BRAFLDRAFT_232718 [Branchiostoma floridae]
gi|229290951|gb|EEN61626.1| hypothetical protein BRAFLDRAFT_232718 [Branchiostoma floridae]
Length = 147
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 75/112 (66%)
Query: 26 QQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTK 85
+ V + +C GC K+I+DR+ LKA+D YWHEDCL C C CRLGEVG LY+K
Sbjct: 4 ETVNEVLDIHPAQLQCGGCSKNISDRYFLKAMDEYWHEDCLSCDLCGCRLGEVGRHLYSK 63
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
LCKRDYLRLFG G C AC K I A+EM+MR+ + V+HL+CF C CN
Sbjct: 64 YGRKLCKRDYLRLFGKDGICCACGKRIRAYEMMMRSLDKVFHLDCFKCFTCN 115
>gi|426245282|ref|XP_004016442.1| PREDICTED: rhombotin-2 [Ovis aries]
Length = 151
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 23 QGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVG 79
+G + V Q P C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG
Sbjct: 2 RGLPSREPVDEVLQMPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVG 61
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 62 RRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 119
>gi|41053684|ref|NP_956566.1| uncharacterized protein LOC393242 [Danio rerio]
gi|29124458|gb|AAH49054.1| Zgc:56628 [Danio rerio]
Length = 172
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 77/113 (68%)
Query: 27 QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
Q V A + C GCG I+DRFLL ALD YWH CLKC CC +L E+GS+ +TK
Sbjct: 20 QAAHVRMGALAWKRCVGCGCKISDRFLLFALDGYWHCHCLKCSCCQAQLAEIGSSCFTKR 79
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LILCK DYLRLFG +G C AC IPA EMVMRA+ NV+H++CF C C+++
Sbjct: 80 GLILCKSDYLRLFGHSGACRACGTSIPANEMVMRAQGNVFHVKCFVCSICHNQ 132
>gi|156549266|ref|XP_001599629.1| PREDICTED: lipoma-preferred partner homolog [Nasonia vitripennis]
Length = 281
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 72/105 (68%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P A Q+CAGCG I DR+LL AL+ YWH +CLKC C L E+G + Y+K N+ILC
Sbjct: 123 PGMATSNQQCAGCGNRIVDRWLLFALERYWHNNCLKCTTCGTALAEIGQSCYSKGNMILC 182
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
K DY R+FGSTG CAAC + I A E+V RA NV+H +CF C +C
Sbjct: 183 KNDYTRMFGSTGACAACGQTIAATELVTRAGGNVFHPKCFTCTKC 227
>gi|326920334|ref|XP_003206429.1| PREDICTED: rhombotin-2-like [Meleagris gallopavo]
Length = 183
Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 55 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 114
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 115 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 151
>gi|432113866|gb|ELK35978.1| Rhombotin-2 [Myotis davidii]
Length = 156
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/124 (51%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDC 73
M G + V Q P C GC ++I DR+ LKA+D YWHEDCL C C C
Sbjct: 1 MSSSLMLGLLPREPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 60
Query: 74 RLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFAC 133
RLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF C
Sbjct: 61 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 120
Query: 134 QQCN 137
C
Sbjct: 121 AACQ 124
>gi|321477752|gb|EFX88710.1| hypothetical protein DAPPUDRAFT_6311 [Daphnia pulex]
Length = 126
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
N QG + CAGCG I +RFL ALD +WH CLKC CC RL ++G + YTKA +ILC+
Sbjct: 1 NGQGVRACAGCGGKILERFLFHALDRFWHHGCLKCSCCGARLADIGVSCYTKAGMILCRA 60
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARN-NVYHLECFACQQCN 137
DY+RLFGS+G C+AC + IPA E+VMR VYH++CFAC +C
Sbjct: 61 DYVRLFGSSGACSACGQGIPANELVMRVGGAGVYHVKCFACTKCQ 105
>gi|147902984|ref|NP_001081112.1| rhombotin-2 [Xenopus laevis]
gi|82245456|sp|Q90XH3.1|RBTN2_XENLA RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; Short=Lmo2-A; Short=xLMO-2
gi|14150745|gb|AAK54614.1|AF374473_1 LIM-only protein LMO-2 [Xenopus laevis]
gi|66911743|gb|AAH97502.1| Lmo2-A protein [Xenopus laevis]
Length = 158
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D + + + P+ C GC + I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLDPADEPVDEVLQIPPSLLT----CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>gi|194217809|ref|XP_001492641.2| PREDICTED: rhombotin-2-like [Equus caballus]
gi|397520671|ref|XP_003830436.1| PREDICTED: rhombotin-2 [Pan paniscus]
gi|410973530|ref|XP_003993202.1| PREDICTED: rhombotin-2 [Felis catus]
gi|9799068|gb|AAF98804.1| LMO2b splice variant [Homo sapiens]
gi|49256403|gb|AAH73973.1| LMO2 protein [Homo sapiens]
gi|119588587|gb|EAW68181.1| LIM domain only 2 (rhombotin-like 1), isoform CRA_a [Homo sapiens]
Length = 151
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 24 GAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS 80
G + V Q P C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG
Sbjct: 3 GLLSREPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGR 62
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 63 RLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 119
>gi|440910064|gb|ELR59896.1| Rhombotin-2, partial [Bos grunniens mutus]
Length = 147
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 19 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 78
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 79 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 115
>gi|350396214|ref|XP_003484481.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
Length = 417
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 74/108 (68%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P+ G Q+CAGCG I +R+LL A+D YWH CLKC C L E+G + YT++ +ILC
Sbjct: 185 PSGPTGIQQCAGCGGQIVERWLLLAMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMILC 244
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K DY R+FGS+G CA C IPA E+VMRA +V+H +CF C +C ++
Sbjct: 245 KSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQ 292
>gi|328781883|ref|XP_396576.4| PREDICTED: hypothetical protein LOC413125, partial [Apis mellifera]
Length = 417
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 74/108 (68%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P+ G Q+CAGCG I +R+LL A+D YWH CLKC C L E+G + YT++ +ILC
Sbjct: 184 PSGPTGIQQCAGCGGQIVERWLLLAMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMILC 243
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K DY R+FGS+G CA C IPA E+VMRA +V+H +CF C +C ++
Sbjct: 244 KSDYRRMFGSSGACAGCGNAIPATELVMRAGGSVFHQKCFTCSKCGNQ 291
>gi|281350950|gb|EFB26534.1| hypothetical protein PANDA_005865 [Ailuropoda melanoleuca]
gi|355566620|gb|EHH22999.1| LIM domain only protein 2, partial [Macaca mulatta]
gi|355752225|gb|EHH56345.1| LIM domain only protein 2, partial [Macaca fascicularis]
Length = 146
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 18 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 77
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 78 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 114
>gi|354470381|ref|XP_003497486.1| PREDICTED: rhombotin-2-like [Cricetulus griseus]
gi|344238096|gb|EGV94199.1| Rhombotin-2 [Cricetulus griseus]
Length = 151
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 23 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 82
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 83 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 119
>gi|355699530|gb|AES01158.1| LIM domain only 2 [Mustela putorius furo]
Length = 143
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 16 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 75
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 76 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 112
>gi|417408110|gb|JAA50627.1| Putative transcription factor, partial [Desmodus rotundus]
Length = 148
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 67/97 (69%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 20 CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 79
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 80 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 116
>gi|449270732|gb|EMC81388.1| Rhombotin-2, partial [Columba livia]
Length = 144
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 67/97 (69%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 16 CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 75
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 76 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 112
>gi|301015740|pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
gi|301015742|pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015743|pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015744|pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015745|pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015746|pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 68/97 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRLFG
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 64
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 65 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 101
>gi|427795151|gb|JAA63027.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 182
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 79/106 (74%), Gaps = 1/106 (0%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
+AQG + CAGCG I DR+LL ALD YWH CLKC CC L ++G++ + KA +ILC+
Sbjct: 36 DAQG-RCCAGCGAKILDRYLLHALDRYWHNGCLKCSCCQATLADIGASCFAKAGMILCRN 94
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
DY+RLFG++G C+ C ++IPA + VMRA NVYH++CFAC +C+ +
Sbjct: 95 DYIRLFGTSGACSGCGQMIPANDYVMRAAQNVYHVKCFACVKCHSQ 140
>gi|7963882|gb|AAF71368.1|AF258348_1 neuronal specific transcription factor DAT1 [Homo sapiens]
Length = 125
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 70/102 (68%), Gaps = 20/102 (19%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDC KC CCDCR + R
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCPKCACCDCR--------------------WER 49
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 50 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 91
>gi|444524171|gb|ELV13774.1| Rhombotin-2 [Tupaia chinensis]
Length = 151
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 66/97 (68%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I DR+ LKA+D YWHEDCL C C CRLGE G LY K LC+RDYLRLFG
Sbjct: 23 CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEGGRRLYYKLGRKLCRRDYLRLFG 82
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 83 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 119
>gi|47206717|emb|CAG12297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 137
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 70/101 (69%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL +++ YWH CL+C CC +LG + + Y++ LILC+ DY RL
Sbjct: 1 RTCAGCGGRIADRFLLFSMERYWHTRCLRCSCCHAQLGALSRSCYSRGGLILCRDDYARL 60
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG G C AC + IP EMVMRA+ +VYHL+CFAC C HR
Sbjct: 61 FGHAGACGACGQTIPPSEMVMRAQGSVYHLKCFACATCRHR 101
>gi|405963181|gb|EKC28778.1| LIM domain transcription factor LMO4.1 [Crassostrea gigas]
Length = 165
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 22 QQGAQQTKAVPNNAQGP--QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVG 79
QG Q P + + CAGCG I+DRFLL A++ +WH CLKC CC L ++G
Sbjct: 2 SQGLGQASTTPADGYNAPIKACAGCGSRISDRFLLHAMERFWHTACLKCSCCQTNLEQLG 61
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S +T+A +ILCK DY+RLF S G CA C + IPA EMVMR + NVYHL+CF C CN
Sbjct: 62 S-CFTRAGMILCKNDYMRLFCSGGSCAGCGQSIPANEMVMRTQGNVYHLKCFNCYTCN 118
>gi|270154817|gb|ACZ62637.1| LIM domain only protein [Paracentrotus lividus]
Length = 174
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
R+ + + V N EC GC + I DR+ L+A++ YWHEDCL C C
Sbjct: 28 QRVERHSQIDSNGETVDEVLNVNPSYLECLGCKESIKDRYFLRAMEKYWHEDCLSCDLCQ 87
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNV-YHLECF 131
CRLGEV +Y+K LCKRDYLRLF +G C+AC++ IPA+E+VM + YHLECF
Sbjct: 88 CRLGEVDCHMYSKLGRKLCKRDYLRLFAPSGVCSACNRAIPAYELVMTTSSECRYHLECF 147
Query: 132 ACQQCN 137
C QC+
Sbjct: 148 KCSQCD 153
>gi|390358172|ref|XP_003729196.1| PREDICTED: rhombotin-2-like [Strongylocentrotus purpuratus]
Length = 174
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
R+ + + V N EC GC + I DR+ L+A++ YWHEDCL C C
Sbjct: 28 QRVERHSQIDSNGETVDEVLNVNPSYLECHGCKESIKDRYFLRAIEKYWHEDCLSCDLCQ 87
Query: 73 CRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNV-YHLECF 131
CRLGEV +Y+K LCKRDYLRLF +G C+AC++ IPA+E+VM + YHLECF
Sbjct: 88 CRLGEVDCHMYSKLGRKLCKRDYLRLFAPSGVCSACNRAIPAYELVMTTSSECRYHLECF 147
Query: 132 ACQQCN 137
C QC+
Sbjct: 148 KCSQCD 153
>gi|91082483|ref|XP_972328.1| PREDICTED: similar to GA19074-PA [Tribolium castaneum]
gi|270007532|gb|EFA03980.1| hypothetical protein TcasGA2_TC014129 [Tribolium castaneum]
Length = 341
Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 10/106 (9%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I +RFLL ALD YWH CLKC CC L ++G++ +TK +ILCK+DY RLFG
Sbjct: 187 CAGCGGKIVERFLLHALDRYWHNSCLKCSCCAAMLADIGTSCFTKGGMILCKQDYTRLFG 246
Query: 101 STGYCAACSKVIPAFEMVMRARN----------NVYHLECFACQQC 136
++G C+AC ++IPA E VMR+ +V+HL+CF C +C
Sbjct: 247 NSGACSACGQMIPASEFVMRSGGPSPQQPGAPLHVFHLKCFVCSKC 292
>gi|432952552|ref|XP_004085130.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oryzias
latipes]
Length = 162
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 66/92 (71%)
Query: 48 ITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107
I DRFLL +++ YWH CLKC CC LGE ST Y+K +ILCK DY+RLFG +G C A
Sbjct: 31 ILDRFLLFSMERYWHTRCLKCSCCHAPLGEFSSTCYSKGGMILCKNDYIRLFGHSGACCA 90
Query: 108 CSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
C + IPA EMVMRA+ NVYHL+CF C C +R
Sbjct: 91 CGQSIPASEMVMRAQGNVYHLKCFTCATCRNR 122
>gi|349803667|gb|AEQ17306.1| putative rhombotin-2 [Pipa carvalhoi]
Length = 130
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I DR+ LKA+D YWHEDCL C C CRLG VG LY K LC+RDYLRLFG
Sbjct: 4 CGGCHQSIGDRYFLKAIDQYWHEDCLSCDLCGCRLG-VGRRLYYKLGRKLCRRDYLRLFG 62
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA+C K I A+EM MR ++ VYHLECF C C
Sbjct: 63 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 99
>gi|335776020|gb|AEH58766.1| LIM domain transcription factor LMO4-like protein [Equus caballus]
Length = 129
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 69/88 (78%)
Query: 52 FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKV 111
FLL A+D YWH CLKC CC +LG++G++ YTK+ +ILC+ DY+RLFG++G C+AC +
Sbjct: 1 FLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQS 60
Query: 112 IPAFEMVMRARNNVYHLECFACQQCNHR 139
IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 61 IPASELVMRAQGNVYHLKCFTCSTCRNR 88
>gi|242011268|ref|XP_002426377.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
gi|212510454|gb|EEB13639.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
Length = 256
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 72/113 (63%), Gaps = 10/113 (8%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
G + C GCG I +RFLL ALD YWH CLKC CC L ++GS+ +TKA +ILCK D
Sbjct: 91 GSGLKICGGCGGKIVERFLLHALDRYWHNGCLKCSCCHAMLADIGSSCFTKAGMILCKTD 150
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRA----------RNNVYHLECFACQQCN 137
Y RLFG+TG C+AC + IP E VMRA ++V+HL+CF C +C
Sbjct: 151 YARLFGNTGACSACGQTIPPNEFVMRAGAGAPGPHPQSHHVFHLKCFVCSKCG 203
>gi|358335730|dbj|GAA54362.1| LIM domain transcription factor LMO4-B [Clonorchis sinensis]
Length = 303
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 68/96 (70%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I +R LL ALD +WH CL C CC RL E+G +++ +++++LC++DYLRLFG
Sbjct: 5 CAGCGDPIVERTLLNALDRFWHTGCLNCSCCGLRLDELGPSVFVRSDMLLCRQDYLRLFG 64
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+G CA C + IP E+VMR + +VYH+ CF C C
Sbjct: 65 LSGTCAKCRQKIPPDELVMRCQESVYHVRCFCCFHC 100
>gi|256071672|ref|XP_002572163.1| lim-only [Schistosoma mansoni]
gi|353229928|emb|CCD76099.1| putative lim-only [Schistosoma mansoni]
Length = 294
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I ++ LL A+D +WH CL C CC RL E+G +++ ++N++LC++DYL+LF
Sbjct: 4 SCAGCGGPIVEKTLLNAIDRFWHTSCLNCSCCGLRLDELGPSVFVRSNMLLCRQDYLKLF 63
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G +G CA C IP E+VMR ++ VYH+ CF C C
Sbjct: 64 GLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFCCTHC 100
>gi|189503044|gb|ACE06903.1| unknown [Schistosoma japonicum]
gi|226469222|emb|CAX70090.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469224|emb|CAX70091.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469226|emb|CAX70092.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
Length = 291
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I ++ LL A+D +WH CL C CC RL E+G +++ ++N++LC++DYL+LF
Sbjct: 4 SCAGCGGPIVEKTLLNAIDRFWHTTCLNCSCCGLRLDELGPSVFVRSNMLLCRQDYLKLF 63
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G +G CA C IP E+VMR ++ VYH+ CF C C
Sbjct: 64 GLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFCCTHC 100
>gi|431908379|gb|ELK11976.1| LIM domain only protein 3 [Pteropus alecto]
Length = 106
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNN 124
S ++P +RA+N
Sbjct: 70 TASSDSLLTNYDHLLPLLS-DLRAQNT 95
>gi|29841053|gb|AAP06066.1| similar to NM_006769 LIM domain only 4 in Homo sapiens [Schistosoma
japonicum]
Length = 291
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I ++ LL A+D +WH CL C CC RL E G +++ ++N++LC++DYL+LF
Sbjct: 4 SCAGCGGPIVEKTLLNAIDRFWHTTCLNCSCCGLRLDEFGPSVFVRSNMLLCRQDYLKLF 63
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G +G CA C IP E+VMR ++ VYH+ CF C C
Sbjct: 64 GLSGTCAKCRVQIPPDELVMRCQDKVYHVNCFCCTHC 100
>gi|393902317|gb|EFO13539.2| hypothetical protein LOAG_14989 [Loa loa]
Length = 135
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 60/74 (81%)
Query: 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNV 125
+C CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAFE+VMRA++NV
Sbjct: 3 FQCACCLCRLGELGSKLYYKQSMILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNV 62
Query: 126 YHLECFACQQCNHR 139
YHL CFACQ CN R
Sbjct: 63 YHLRCFACQVCNQR 76
>gi|380806861|gb|AFE75306.1| rhombotin-1, partial [Macaca mulatta]
Length = 76
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 60/69 (86%), Gaps = 1/69 (1%)
Query: 34 NAQGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+
Sbjct: 8 QPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCR 67
Query: 93 RDYLRLFGS 101
RDYLRLFG+
Sbjct: 68 RDYLRLFGT 76
>gi|312105562|ref|XP_003150530.1| hypothetical protein LOAG_14989 [Loa loa]
Length = 98
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 60/74 (81%)
Query: 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNV 125
+C CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAFE+VMRA++NV
Sbjct: 3 FQCACCLCRLGELGSKLYYKQSMILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNV 62
Query: 126 YHLECFACQQCNHR 139
YHL CFACQ CN R
Sbjct: 63 YHLRCFACQVCNQR 76
>gi|195119225|ref|XP_002004132.1| GI18740 [Drosophila mojavensis]
gi|193914707|gb|EDW13574.1| GI18740 [Drosophila mojavensis]
Length = 238
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 77/134 (57%), Gaps = 16/134 (11%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
MD + + Q PN + C GCG I+DR+LL ALD YWH CLKC CC L
Sbjct: 55 MDESSNEFNNQQLIHPNTL--IKVCGGCGDKISDRYLLYALDRYWHNSCLKCHCCGAMLA 112
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRAR---NNV-------- 125
+VGS+ +T+ LILCK+DY +FGS+G C+ C + IP EMV +A NN+
Sbjct: 113 DVGSSCFTRRGLILCKKDYSSMFGSSGVCSGCGETIPPSEMVAKALTGINNIDLQNQQKQ 172
Query: 126 ---YHLECFACQQC 136
+HL CF+C +C
Sbjct: 173 IINFHLRCFSCAKC 186
>gi|392340262|ref|XP_003754026.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
Length = 114
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 58/75 (77%), Gaps = 2/75 (2%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRL 98
TKANLILC+RDYLR
Sbjct: 67 TKANLILCRRDYLRF 81
>gi|195050615|ref|XP_001992931.1| GH13372 [Drosophila grimshawi]
gi|193899990|gb|EDV98856.1| GH13372 [Drosophila grimshawi]
Length = 241
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 68/113 (60%), Gaps = 17/113 (15%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L +VGS+ +T+ LILCK+DY +FG
Sbjct: 77 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLADVGSSCFTRRGLILCKKDYSSMFG 136
Query: 101 STGYCAACSKVIPAFEMVMRA----RNN-------------VYHLECFACQQC 136
S+G C C + IP EMV +A NN VYHL CF+C +C
Sbjct: 137 SSGVCTGCGETIPPSEMVAKALTGINNNIDLQNQQKHIINCVYHLRCFSCAKC 189
>gi|194378152|dbj|BAG57826.1| unnamed protein product [Homo sapiens]
Length = 80
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLR 97
TKANLILC+RDYLR
Sbjct: 67 TKANLILCRRDYLR 80
>gi|345312248|ref|XP_001512401.2| PREDICTED: rhombotin-1-like, partial [Ornithorhynchus anatinus]
Length = 88
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 16 SMDVKTQQGAQQTKAVPNNAQGPQE----CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
S+ V + Q +VP + P+ CAGC + I DR+LLKALD YWHEDCLKC CC
Sbjct: 3 SLLVGGRSSLPQVSSVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC 62
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLR 97
DCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 63 DCRLGEVGSTLYTKANLILCRRDYLR 88
>gi|256088687|ref|XP_002580458.1| rhombotin [Schistosoma mansoni]
gi|350644447|emb|CCD60816.1| rhombotin, putative [Schistosoma mansoni]
Length = 287
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 65/99 (65%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ C + I + L A YWHEDCL+C CCD RL E+ Y KA + LC+RDYLRL+G
Sbjct: 26 CSKCKQCIKESHYLLADCQYWHEDCLRCICCDARLAELDKIFYIKARMSLCRRDYLRLYG 85
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TG C+ C K + ++E VM+ +N+VYHL CF CQ C R
Sbjct: 86 KTGECSICQKQVQSYEFVMKIKNSVYHLSCFCCQHCQMR 124
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 40 ECAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
EC+ C K + F++K + +H C C C R +G Y N+ILC+ DY+ L
Sbjct: 89 ECSICQKQVQSYEFVMKIKNSVYHLSCFCCQHCQMRFC-IGDRFYLHENIILCEHDYMEL 147
Query: 99 F 99
F
Sbjct: 148 F 148
>gi|107602|pir||C39370 rhombotin homolog 3 - human (fragment)
Length = 72
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 1 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 58
Query: 84 TKANLILCKRDYLR 97
TKANLILC+RDYLR
Sbjct: 59 TKANLILCRRDYLR 72
>gi|403182403|gb|EAT47695.2| AAEL001207-PA [Aedes aegypti]
Length = 702
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 31/128 (24%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ C GCG IT+RF L ALD YWH CLKC CC L ++GS+ YT++ +ILCK DY RL
Sbjct: 75 KHCGGCGGKITERFFLHALDRYWHNSCLKCSCCGAMLADIGSSCYTRSGMILCKADYSRL 134
Query: 99 FGSTGYCAACSKVIPAFEMVMR------------------------------ARNNVYHL 128
FG TG C+AC + IPA E VMR +++V+HL
Sbjct: 135 FG-TGACSACHQTIPANEFVMRTTSHTTINNNLNNASNQNGANNNNNNGQAVPQHHVFHL 193
Query: 129 ECFACQQC 136
+CF C +C
Sbjct: 194 KCFQCSKC 201
>gi|391334316|ref|XP_003741551.1| PREDICTED: LIM domain transcription factor LMO4-A-like [Metaseiulus
occidentalis]
Length = 189
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 71/105 (67%), Gaps = 4/105 (3%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CA CG I DR+ L A+D YWH CLKC C L ++G++ + K ++ILC+ DY+R+
Sbjct: 35 RPCAACGGAIQDRYFLHAMDRYWHHSCLKCSLCATPLADIGTSCFFKNDMILCRTDYVRM 94
Query: 99 FGSTGYCAACSKVIPAFEMVMRARN----NVYHLECFACQQCNHR 139
FGS G CAAC+++IPA + VMRA + VYH CF+C +C ++
Sbjct: 95 FGSPGMCAACNQMIPANDYVMRAPSMRGGQVYHPTCFSCVKCQNQ 139
>gi|195403013|ref|XP_002060090.1| GJ14918 [Drosophila virilis]
gi|194149412|gb|EDW65107.1| GJ14918 [Drosophila virilis]
Length = 240
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 16/112 (14%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L +VG++ +T+ LILCK+DY +FG
Sbjct: 77 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLADVGASCFTRRGLILCKKDYSSMFG 136
Query: 101 STGYCAACSKVIPAFEMVMRAR----------------NNVYHLECFACQQC 136
S+G C+ C + IP EMV +A N V+HL CF+C +C
Sbjct: 137 SSGVCSGCGETIPPSEMVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKC 188
>gi|148678644|gb|EDL10591.1| mCG11664 [Mus musculus]
gi|149049118|gb|EDM01572.1| rCG30144 [Rattus norvegicus]
Length = 103
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 54/61 (88%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 L 98
Sbjct: 70 F 70
>gi|291223505|ref|XP_002731750.1| PREDICTED: LIM domain only protein-like [Saccoglossus kowalevskii]
Length = 153
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
EC C + I D++ LKA+ YWHEDCL C C CRLGEVG + K LCKRDYLRLF
Sbjct: 22 ECGECREKIKDQYFLKAIGKYWHEDCLVCDLCQCRLGEVGCHVLVKLGRKLCKRDYLRLF 81
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNV-YHLECFACQQCN 137
G TG C +C + I A+EM M+ V YHLECF C +C
Sbjct: 82 GPTGLCNSCQQPIAAYEMAMKITPQVQYHLECFKCAECE 120
>gi|241738273|ref|XP_002414047.1| rhombotin, putative [Ixodes scapularis]
gi|215507901|gb|EEC17355.1| rhombotin, putative [Ixodes scapularis]
Length = 173
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 54/61 (88%), Gaps = 1/61 (1%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
GP ECAGC K I +RFLLKALD WHEDCLKC CCDCRLGEVGSTL+TKANLILCKRDYL
Sbjct: 70 GP-ECAGCQKPIRERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYL 128
Query: 97 R 97
R
Sbjct: 129 R 129
>gi|253828|gb|AAB22956.1| rhombotin LIM 1 domain [human, brain, Peptide Partial, 69 aa]
gi|55731657|emb|CAH92534.1| hypothetical protein [Pongo abelii]
gi|55733193|emb|CAH93280.1| hypothetical protein [Pongo abelii]
Length = 69
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/60 (83%), Positives = 54/60 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
>gi|195339689|ref|XP_002036449.1| GM11938 [Drosophila sechellia]
gi|195473535|ref|XP_002089048.1| GE26318 [Drosophila yakuba]
gi|195578073|ref|XP_002078890.1| GD22293 [Drosophila simulans]
gi|194130329|gb|EDW52372.1| GM11938 [Drosophila sechellia]
gi|194175149|gb|EDW88760.1| GE26318 [Drosophila yakuba]
gi|194190899|gb|EDX04475.1| GD22293 [Drosophila simulans]
Length = 241
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L EVGS+ +T+ LILCK+DY +FG
Sbjct: 78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFG 137
Query: 101 STGYCAACSKVIPAFEMVMRAR----------------NNVYHLECFACQQC 136
+G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 138 CSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKC 189
>gi|24583264|ref|NP_609359.1| CG5708, isoform A [Drosophila melanogaster]
gi|24583266|ref|NP_723534.1| CG5708, isoform B [Drosophila melanogaster]
gi|22946096|gb|AAF52877.2| CG5708, isoform A [Drosophila melanogaster]
gi|22946097|gb|AAN10724.1| CG5708, isoform B [Drosophila melanogaster]
gi|46409202|gb|AAS93758.1| LD11652p [Drosophila melanogaster]
Length = 241
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L EVGS+ +T+ LILCK+DY +FG
Sbjct: 78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFG 137
Query: 101 STGYCAACSKVIPAFEMVMRAR----------------NNVYHLECFACQQC 136
+G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 138 CSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKC 189
>gi|194761684|ref|XP_001963058.1| GF14129 [Drosophila ananassae]
gi|190616755|gb|EDV32279.1| GF14129 [Drosophila ananassae]
Length = 241
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L EVGS+ +T+ LILCK+DY +FG
Sbjct: 78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFG 137
Query: 101 STGYCAACSKVIPAFEMVMRAR----------------NNVYHLECFACQQC 136
+G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 138 CSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKC 189
>gi|194859624|ref|XP_001969417.1| GG23969 [Drosophila erecta]
gi|190661284|gb|EDV58476.1| GG23969 [Drosophila erecta]
Length = 241
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L EVGS+ +T+ LILCK+DY +FG
Sbjct: 78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFG 137
Query: 101 STGYCAACSKVIPAFEMVMRAR----------------NNVYHLECFACQQC 136
+G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 138 CSGVCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKC 189
>gi|125986810|ref|XP_001357168.1| GA19074 [Drosophila pseudoobscura pseudoobscura]
gi|195146774|ref|XP_002014359.1| GL19153 [Drosophila persimilis]
gi|54645497|gb|EAL34236.1| GA19074 [Drosophila pseudoobscura pseudoobscura]
gi|194106312|gb|EDW28355.1| GL19153 [Drosophila persimilis]
Length = 241
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 16/112 (14%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I+DR+LL ALD YWH CLKC CC L EVGS+ +T+ LILCK+DY +FG
Sbjct: 78 CGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFG 137
Query: 101 STGYCAACSKVIPAFEMVMRAR----------------NNVYHLECFACQQC 136
+G C+ C + IP E+V +A N V+HL CF+C +C
Sbjct: 138 CSGVCSGCGETIPPSELVAKALTGINNIDIQSQQKQIINCVFHLRCFSCAKC 189
>gi|345319701|ref|XP_001512541.2| PREDICTED: LIM domain only protein 3-like, partial
[Ornithorhynchus anatinus]
Length = 70
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 53/59 (89%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYL
Sbjct: 12 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 70
>gi|122053881|gb|ABM65925.1| LMO1 [Ateles geoffroyi]
gi|124013575|gb|ABM88039.1| LMO1 [Macaca nemestrina]
gi|124054184|gb|ABM89286.1| LMO1 [Pongo pygmaeus]
Length = 70
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
Query: 34 NAQGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+
Sbjct: 7 QPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCR 66
Query: 93 RDYL 96
RDYL
Sbjct: 67 RDYL 70
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 85 TK--CAACHQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 121
>gi|196000094|ref|XP_002109915.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588039|gb|EDV28081.1| expressed hypothetical protein, partial [Trichoplax adhaerens]
Length = 119
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 62/99 (62%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I D+ LL ++D +WH +CLKC CC RL +V + Y K+ LILC+RDY+R FG
Sbjct: 2 CAGCGTEIRDKHLLLSMDRHWHVNCLKCSCCGIRLDDVATKCYYKSGLILCQRDYIRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
S G CA C + I EMV++ YH CF C C R
Sbjct: 62 SGGSCAGCLQAISPDEMVLKLNQRAYHPNCFTCVVCTSR 100
>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
anatinus]
Length = 884
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
A T P N + +CAGC +HI D+F+LK LD +WH CLKC C +L + +
Sbjct: 563 AAAPTVPNPVNWEKIPQCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLAD---RCF 619
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
++A + CK D+ + FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 620 SRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 673
>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
Length = 472
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC +HI DRF+LK D WH CLKCG C +L + +++ + + CK D+ + +
Sbjct: 77 KCTGCAQHIFDRFILKVQDKPWHAQCLKCGDCGRQLTD---KCFSRGSFVYCKEDFFKRY 133
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA C + IP E+V RA+ NVYHLECF C CN
Sbjct: 134 GTK--CAGCDEAIPPTEVVRRAQENVYHLECFRCFMCN 169
Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+CAGC + I + +A + +H +C +C C+ +LG N ++CK+DY
Sbjct: 136 KCAGCDEAIPPTEVVRRAQENVYHLECFRCFMCNDQLGTGDQFYLLDDNRLVCKKDY 192
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 9/106 (8%)
Query: 38 PQE----CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
PQE CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK
Sbjct: 75 PQEEIPLCAGCDQHILDRFVLKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKD 131
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
D+ + FG+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 132 DFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 175
>gi|328787176|ref|XP_392622.4| PREDICTED: protein apterous [Apis mellifera]
Length = 560
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL-GEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DRF L+A+D WH CL+C C L GEV T +++ I CK+DY R+F
Sbjct: 188 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 245
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
GS CA C I A E+VMRAR+ V+H+ CF+C C
Sbjct: 246 GSMKRCARCHAAILASELVMRARDLVFHVRCFSCAAC 282
>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 2/98 (2%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I +RF L A+D WH DCLKC C+ RL + T ++K +ILC+ DY R F
Sbjct: 9 CAGCGSRILERFYLMAVDQEWHADCLKCSDCELRL-DNELTCFSKDGVILCREDYYRRF- 66
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
S C++CS+ I + E+VMRAR+ VYH+ CFAC +C
Sbjct: 67 SVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKR 104
>gi|380027050|ref|XP_003697249.1| PREDICTED: protein apterous-like [Apis florea]
Length = 555
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/97 (50%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL-GEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DRF L+A+D WH CL+C C L GEV T +++ I CK+DY R+F
Sbjct: 186 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 243
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
GS CA C I A E+VMRAR V+H+ CF+C C
Sbjct: 244 GSMKRCARCHAAILASELVMRARELVFHVRCFSCAAC 280
>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
Length = 502
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 165 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 222
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 223 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 259
>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
Length = 449
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 88 QCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 144
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 145 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 182
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK L+ +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 5 CAGCNQHIVDRFILKVLERHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 62 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 98
>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
Length = 378
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 33 QMNGRETNMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 146
>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 52 QMNGRETNMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 109
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 110 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 165
>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
Length = 378
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 33 QMNGRETNMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 146
>gi|124377606|dbj|BAF46220.1| LIM homeobox gene 9 epsilon protein [Glandirana rugosa]
Length = 297
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
NR++ + Q ++T+ P + + P CAGCG I+DR+ L A+D WH CLK CC+
Sbjct: 27 NRLAKTI--QVNGRETRMPPLSPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCE 82
Query: 73 CRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
C+L E T + K I CK DY R F S CA C I A E+VMRAR +VYHL CF
Sbjct: 83 CKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEIVMRARESVYHLSCF 141
Query: 132 ACQQCN 137
C CN
Sbjct: 142 TCTXCN 147
>gi|124377604|dbj|BAF46219.1| LIM homeobox gene 9 delta protein [Glandirana rugosa]
Length = 312
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
NR++ + Q ++T+ P + + P CAGCG I+DR+ L A+D WH CLK CC+
Sbjct: 27 NRLAKTI--QVNGRETRMPPLSPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCE 82
Query: 73 CRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
C+L E T + K I CK DY R F S CA C I A E+VMRAR +VYHL CF
Sbjct: 83 CKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEIVMRARESVYHLSCF 141
Query: 132 ACQQCN 137
C CN
Sbjct: 142 TCTXCN 147
>gi|124377600|dbj|BAF46217.1| LIM homeobox gene 9 beta protein [Glandirana rugosa]
Length = 347
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
NR++ + Q ++T+ P + + P CAGCG I+DR+ L A+D WH CLK CC+
Sbjct: 27 NRLAKTI--QVNGRETRMPPLSPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCE 82
Query: 73 CRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
C+L E T + K I CK DY R F S CA C I A E+VMRAR +VYHL CF
Sbjct: 83 CKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEIVMRARESVYHLSCF 141
Query: 132 ACQQCN 137
C CN
Sbjct: 142 TCTTCN 147
>gi|224493106|sp|A2PZF9.1|LHX9_RANRU RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|124377598|dbj|BAF46216.1| LIM homeobox gene 9 alpha protein [Glandirana rugosa]
Length = 379
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
NR++ + Q ++T+ P + + P CAGCG I+DR+ L A+D WH CLK CC+
Sbjct: 27 NRLAKTI--QVNGRETRMPPLSPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCE 82
Query: 73 CRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
C+L E T + K I CK DY R F S CA C I A E+VMRAR +VYHL CF
Sbjct: 83 CKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEIVMRARESVYHLSCF 141
Query: 132 ACQQCN 137
C CN
Sbjct: 142 TCTTCN 147
>gi|124377602|dbj|BAF46218.1| LIM homeobox gene 9 gamma protein [Glandirana rugosa]
Length = 331
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
NR++ + Q ++T+ P + + P CAGCG I+DR+ L A+D WH CLK CC+
Sbjct: 27 NRLAKTI--QVNGRETRMPPLSPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCE 82
Query: 73 CRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
C+L E T + K I CK DY R F S CA C I A E+VMRAR +VYHL CF
Sbjct: 83 CKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEIVMRARESVYHLSCF 141
Query: 132 ACQQCN 137
C CN
Sbjct: 142 TCTTCN 147
>gi|443711321|gb|ELU05149.1| hypothetical protein CAPTEDRAFT_228137 [Capitella teleta]
Length = 506
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 63/100 (63%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGCG I DRF+LK LD WH CL C C+ G + ++K + + CK D+ R F
Sbjct: 143 KCAGCGDAILDRFILKVLDRSWHSKCLMCADCN---GHLSDKCFSKGDKVYCKEDFFRRF 199
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA C + IP ++V RA++NVYHLECFAC C+ +
Sbjct: 200 GTK--CAGCEQGIPPTQVVRRAQDNVYHLECFACSMCSQQ 237
>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
Length = 378
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q + T P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 33 QMNGRDTNMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 146
>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
Length = 690
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC I DRF+LK D WH CLKC C +L E +++ NL+ CK D+ + F
Sbjct: 281 KCTGCEHRIFDRFILKVQDKPWHSQCLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRF 337
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC IP E++ RA++NVYHLECF C C+ +
Sbjct: 338 GTK--CTACGHGIPPTEVIRRAQDNVYHLECFCCFLCHEK 375
>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
Length = 378
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + T P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 32 TQLNGRDTGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESE 89
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 90 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCFTCN 146
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 33 NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
N+ Q CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK
Sbjct: 20 NSGQEIPVCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCK 76
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
D+ + FG+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 77 EDFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 118
>gi|339244905|ref|XP_003378378.1| putative LIM domain protein [Trichinella spiralis]
gi|316972716|gb|EFV56377.1| putative LIM domain protein [Trichinella spiralis]
Length = 164
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 68 CGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYH 127
C C+CRL +VGS+L+ K ++ILCK DYLR+FG G C+ACSK IPA EMVMRA NVYH
Sbjct: 33 CAMCNCRLTQVGSSLFVKKDMILCKTDYLRVFGLKGKCSACSKDIPACEMVMRAGKNVYH 92
Query: 128 LECFACQQCNHR 139
LECF CQ C+ R
Sbjct: 93 LECFGCQDCHCR 104
>gi|301605174|ref|XP_002932200.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 331
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
Query: 7 LEHLKINRMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWH 62
+E ++ S D + +G Q +T+ + + P CAGCG I+DR+ L A+D WH
Sbjct: 34 MEEMERRSKSADSRLAKGIQVNGRETRMPSLSPEKPALCAGCGGKISDRYYLLAVDKQWH 93
Query: 63 EDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRA 121
CLKC C+C+L E T + K I CK DY R F S CA C I A EMVMRA
Sbjct: 94 LRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRA 150
Query: 122 RNNVYHLECFACQQCN 137
R +VYHL CF C CN
Sbjct: 151 RESVYHLSCFTCTTCN 166
>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
Length = 399
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q +++T+ N + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 54 QVNSRETRMPTLNPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLTLESEL 111
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 112 TCFAKDGSIYCKEDYYRRF-SVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 167
>gi|6754542|ref|NP_034844.1| LIM/homeobox protein Lhx9 isoform b [Mus musculus]
gi|6179608|emb|CAB59907.1| putative LIM-homeodomain alpha isoform [Mus musculus]
gi|148707590|gb|EDL39537.1| LIM homeobox protein 9, isoform CRA_b [Mus musculus]
Length = 321
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 42 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 99
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 100 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 156
>gi|354485100|ref|XP_003504722.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cricetulus
griseus]
gi|118763751|gb|AAI28723.1| Lhx9 protein [Rattus norvegicus]
Length = 321
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 42 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 99
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 100 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 156
>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 398
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
Query: 7 LEHLKINRMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWH 62
+E ++ S D + +G Q +T+ + + P CAGCG I+DR+ L A+D WH
Sbjct: 34 MEEMERRSKSADSRLAKGIQVNGRETRMPSLSPEKPALCAGCGGKISDRYYLLAVDKQWH 93
Query: 63 EDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRA 121
CLKC C+C+L E T + K I CK DY R F S CA C I A EMVMRA
Sbjct: 94 LRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRA 150
Query: 122 RNNVYHLECFACQQCN 137
R +VYHL CF C CN
Sbjct: 151 RESVYHLSCFTCTTCN 166
>gi|6180222|emb|CAB59909.1| putative LIM homeodomain protein [Mus musculus]
Length = 299
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 20 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 77
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 78 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 134
>gi|70909340|ref|NP_001020736.1| LIM/homeobox protein Lhx9 isoform a [Mus musculus]
gi|49119043|gb|AAH72623.1| LIM homeobox protein 9 [Mus musculus]
Length = 330
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 51 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 108
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 109 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 165
>gi|4809142|gb|AAD30110.1|AF134761_1 LIM-homeodomain type transcription factor Lhx9 [Mus musculus]
Length = 300
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 42 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 99
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 100 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 156
>gi|110611159|ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus]
gi|224471884|sp|Q9WUH2.3|LHX9_MOUSE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 51 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 108
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 109 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 165
>gi|344254817|gb|EGW10921.1| LIM/homeobox protein Lhx9 [Cricetulus griseus]
Length = 311
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 32 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 89
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 90 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 146
>gi|354485102|ref|XP_003504723.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cricetulus
griseus]
Length = 397
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 51 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 108
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 109 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 165
>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 388
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 42 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 99
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 100 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 156
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 35 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 91
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 92 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 125
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 5/104 (4%)
Query: 33 NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
N+ Q CAGC +HI DRF+LK LD +WH CLKC C +L + +T+ + + CK
Sbjct: 20 NSGQEIPMCAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAD---KCFTRGDSVYCK 76
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
D+ + FG+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 77 DDFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 118
>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
domestica]
gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
harrisii]
Length = 321
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++ P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 43 QMNGREASMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 100
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 101 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 156
>gi|27923333|gb|AAO27570.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 325
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 20 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 77
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 78 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 134
>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
harrisii]
Length = 380
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++ P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 33 QMNGREASMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 146
>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
Length = 366
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 20 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 77
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 78 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 134
>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
domestica]
gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
harrisii]
Length = 388
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++ P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 43 QMNGREASMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 100
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 101 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 156
>gi|148707589|gb|EDL39536.1| LIM homeobox protein 9, isoform CRA_a [Mus musculus]
Length = 342
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 42 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 99
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 100 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 156
>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
domestica]
Length = 380
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++ P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 33 QMNGREASMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 146
>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
Length = 377
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 33 QMNGRETSMPSVSPEKPALCAGCGSKISDRYYLLAVDKQWHLRCLKC--CECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCN 146
>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
Length = 479
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 122 RSKTEARLAKGAQLNGRDAAMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 180
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 181 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 238
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 239 SCFTCSTCN 247
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 19 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFG 75
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 76 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 109
>gi|119611698|gb|EAW91292.1| LIM homeobox 9, isoform CRA_f [Homo sapiens]
Length = 321
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|348578264|ref|XP_003474903.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Cavia
porcellus]
Length = 321
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
Length = 397
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|291402698|ref|XP_002717725.1| PREDICTED: LIM homeobox protein 9-like isoform 3 [Oryctolagus
cuniculus]
Length = 321
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|291402694|ref|XP_002717723.1| PREDICTED: LIM homeobox protein 9-like isoform 1 [Oryctolagus
cuniculus]
Length = 397
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|33569216|ref|NP_064589.2| LIM/homeobox protein Lhx9 isoform 1 [Homo sapiens]
gi|73960328|ref|XP_848787.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Canis lupus
familiaris]
gi|332230752|ref|XP_003264559.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Nomascus
leucogenys]
gi|224471883|sp|Q9NQ69.3|LHX9_HUMAN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|33416232|gb|AAP32471.2| LIM-homeobox 9 protein [Homo sapiens]
gi|119611696|gb|EAW91290.1| LIM homeobox 9, isoform CRA_d [Homo sapiens]
gi|124297089|gb|AAI31623.1| LIM homeobox 9 [Homo sapiens]
gi|355558916|gb|EHH15696.1| hypothetical protein EGK_01820 [Macaca mulatta]
gi|355746065|gb|EHH50690.1| hypothetical protein EGM_01558 [Macaca fascicularis]
Length = 397
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|82524343|ref|NP_001032320.1| LIM/homeobox protein Lhx9 isoform 2 [Danio rerio]
gi|76667071|dbj|BAE45355.1| LIM homeodomain type transcription factor Lhx9 [Danio rerio]
Length = 395
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 52 QMNGRETTMPSMSPEKPALCAGCGGKISDRYYLHAVDKQWHLRCLK--CCECKLALESEL 109
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 110 TCFAKDGSIYCKEDYYRRF-SVQRCAHCHLGISASEMVMRARDSVYHLSCFTCTTCN 165
>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
Length = 380
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 21 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 79
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 80 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 137
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 138 SCFTCSTCN 146
>gi|348578260|ref|XP_003474901.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cavia
porcellus]
Length = 397
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|114571656|ref|XP_001139158.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan troglodytes]
Length = 399
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
familiaris]
Length = 380
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 21 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 79
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 80 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 137
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 138 SCFTCSTCN 146
>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
leucogenys]
Length = 399
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|351708127|gb|EHB11046.1| LIM/homeobox protein Lhx9 [Heterocephalus glaber]
Length = 397
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
Length = 380
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 21 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 79
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 80 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 137
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 138 SCFTCSTCN 146
>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
Length = 378
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 21 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 79
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 80 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 137
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 138 SCFTCSTCN 146
>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
porcellus]
Length = 388
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
Length = 447
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
Length = 388
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 388
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|281354175|gb|EFB29759.1| hypothetical protein PANDA_007956 [Ailuropoda melanoleuca]
Length = 382
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
Length = 378
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 21 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 79
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 80 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 137
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 138 SCFTCSTCN 146
>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
Length = 388
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
Length = 388
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
cuniculus]
Length = 388
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
Length = 388
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
Length = 388
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 121
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 32 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 88
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 89 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 125
>gi|332018691|gb|EGI59263.1| Protein apterous [Acromyrmex echinatior]
Length = 558
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 27 QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL-GEVGSTLYTK 85
Q++ VP N CAGCG I+DRF L+A+D WH CL+C C L GEV T +++
Sbjct: 174 QSEDVPGNV----VCAGCGLKISDRFYLQAVDKRWHAACLQCSHCRQGLDGEV--TCFSR 227
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
I CK+DY R+FGS CA C I A E+VMRAR V+H+ CF+C C
Sbjct: 228 DGNIYCKKDYYRMFGSMKRCARCQAAILASELVMRARELVFHVRCFSCAAC 278
>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
Length = 396
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 52 QMNGRETTMPSMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESEL 109
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 110 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 165
>gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
Length = 369
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|345487077|ref|XP_001599660.2| PREDICTED: hypothetical protein LOC100114734 [Nasonia vitripennis]
Length = 644
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL-GEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DRF L+A+D WH CL+C C L GEV T +++ I CK+DY R+F
Sbjct: 239 CAGCGLRISDRFYLQAVDRRWHASCLQCSHCRQGLDGEV--TCFSREGNIYCKKDYYRMF 296
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
GS CA C I A E+VMRAR V+H+ CF+C C+
Sbjct: 297 GSMKRCARCQAAILASELVMRARELVFHVRCFSCAACS 334
>gi|335296199|ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa]
Length = 399
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
Length = 388
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 31 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|62955397|ref|NP_001017710.1| LIM/homeobox protein Lhx9 isoform 1 [Danio rerio]
gi|62205415|gb|AAH93258.1| LIM homeobox 9 [Danio rerio]
Length = 330
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 52 QMNGRETTMPSMSPERPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESEL 109
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 110 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 165
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + F
Sbjct: 27 QCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAE---KCFSRGDSVYCKDDFFKRF 83
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CAAC + IP ++V RA+ VYHL CFAC C
Sbjct: 84 GTK--CAACQQGIPPTQVVRRAQEFVYHLHCFACIVC 118
>gi|348543221|ref|XP_003459082.1| PREDICTED: LIM/homeobox protein Lhx9-like [Oreochromis niloticus]
Length = 509
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 10/122 (8%)
Query: 24 GAQQTKAVPNNAQGP-----QE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL 75
G + A NN+Q P QE CAGCG+ + DRF L A WH CL+C C C L
Sbjct: 147 GGAEESAAANNSQSPTAVSIQEPMTCAGCGEQVLDRFFLLAAGRVWHNPCLRCSQCQCEL 206
Query: 76 GEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
+ +LY + I C++DY R+FG G CA C + IPA ++VMR+ +H CF+CQ+
Sbjct: 207 -QTHPSLYWRDGNIYCQQDYCRMFGG-GQCARCFQPIPASDLVMRSGELTFHPHCFSCQE 264
Query: 136 CN 137
C+
Sbjct: 265 CD 266
>gi|148224455|ref|NP_001087527.1| LIM/homeobox protein Lhx9 [Xenopus laevis]
gi|82198794|sp|Q68EY3.1|LHX9_XENLA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|51258697|gb|AAH80067.1| Lhx9 protein [Xenopus laevis]
Length = 331
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q +++T+ N + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 54 QVNSRETRMPSLNPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLTLESEL 111
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 112 TCFAKDGSIYCKEDYYRF--SVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 166
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 10 LKINRMSMDVKTQQGAQQTKAVPNNAQGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKC 68
+K+ ++ ++ G+ N + +E CAGC + I DR+L+K +D WHE CL+C
Sbjct: 1 MKVEETALSPTSENGSAAAGLATNGTRPSKEMCAGCQRAIDDRYLMKVMDHCWHEQCLQC 60
Query: 69 GCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C RL + + + + CK DY +LFG+ C AC + IP+ E+VMRA +NVYHL
Sbjct: 61 SVCRIRLSH---SCFARDRKLYCKLDYEKLFGTK--CNACFQSIPSSELVMRALSNVYHL 115
Query: 129 ECFACQQCNHR 139
CF C C+ +
Sbjct: 116 RCFTCVTCDQQ 126
>gi|440904877|gb|ELR55334.1| LIM/homeobox protein Lhx9 [Bos grunniens mutus]
Length = 397
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 40 RSKSEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|224471838|sp|A0JNI8.2|LHX9_BOVIN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|110665672|gb|ABG81482.1| LIM homeobox 9 [Bos taurus]
Length = 397
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 40 RSKSEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
Length = 378
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 21 RSKSEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 79
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 80 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 137
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 138 SCFTCSTCN 146
>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
Length = 388
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 31 RSKSEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 89
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 90 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 147
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 148 SCFTCSTCN 156
>gi|326924942|ref|XP_003208681.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Meleagris
gallopavo]
Length = 271
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLIL 90
P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I
Sbjct: 3 PMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIY 60
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 61 CKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 106
>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
gallopavo]
Length = 338
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLIL 90
P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I
Sbjct: 3 PMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIY 60
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 61 CKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 106
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L + +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKEDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 118
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L + +++ + + CK D+ + FG
Sbjct: 12 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKEDFFKRFG 68
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 69 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 105
>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
Length = 369
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 23 QGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTL 82
+ A T A P A+ P CAGC +HI DRF+LKALD +WH CLKC C L E
Sbjct: 17 RAAPLTSAAPWPAEIPL-CAGCDQHILDRFILKALDRHWHSKCLKCTDCHAPLAE---RC 72
Query: 83 YTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+++ + CK D+ + FG+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 73 FSRGESVYCKDDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
Query: 8 EHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLK 67
E L+ M++++K + +P CAGC +HI DRF+LKALD +WH CLK
Sbjct: 4 ESLERVAMTLNMKETRWGAPAPEIPL-------CAGCDQHILDRFILKALDRHWHSKCLK 56
Query: 68 CGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYH 127
C C L E +++ + CK D+ R FG+ CAAC IP ++V RA++ VYH
Sbjct: 57 CSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPTQVVRRAQDFVYH 111
Query: 128 LECFACQQCNHR 139
L CFAC C +
Sbjct: 112 LHCFACVVCKRQ 123
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L + +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 118
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L + +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 118
>gi|383850854|ref|XP_003700989.1| PREDICTED: protein apterous-like [Megachile rotundata]
Length = 620
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL-GEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DRF L+A+D WH CL+C C L GEV T +++ I CK+DY R+F
Sbjct: 245 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 302
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
GS CA C I A E+VMRAR+ V+H+ CF+C C
Sbjct: 303 GSMKRCARCQAAILASELVMRARDLVFHVRCFSCAAC 339
>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
Length = 506
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 173 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 230
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 231 EDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 274
>gi|350404757|ref|XP_003487210.1| PREDICTED: protein apterous-like [Bombus impatiens]
Length = 550
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL-GEVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DRF L+A+D WH CL+C C L GEV T +++ I CK+DY R+F
Sbjct: 175 CAGCGLRISDRFYLQAVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMF 232
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
GS CA C I A E+VMRAR+ V+H+ CF+C C
Sbjct: 233 GSMKRCARCHAAILASELVMRARDLVFHVRCFSCAAC 269
>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
Length = 464
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + + DRFLL LD WH C++C C CRL E +T+ + + C+ D+ R FG
Sbjct: 5 CAGCERPVLDRFLLNVLDRAWHAKCVRCSDCSCRLTE---KCFTRDSKLYCREDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C++ I ++V RARN V+HL+CF C C
Sbjct: 62 TK--CAGCTQGILPNDLVRRARNKVFHLKCFTCAAC 95
>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
Length = 214
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 6/108 (5%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P + + P CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + C
Sbjct: 20 PRSPEIPL-CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYC 75
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K D+ + FG+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 76 KEDFFKRFGTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 121
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 70/112 (62%), Gaps = 6/112 (5%)
Query: 28 TKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKAN 87
+ + P A+ PQ CAGC +HI D+F+LK LD +WH CLKC C +L E +++A
Sbjct: 35 SPSSPLGAEIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAE---RCFSRAG 90
Query: 88 LILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CK D+ + FG+ C AC + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 91 SVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQ 140
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
++ +L R +LR FG+ C AC + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 269 SDSVLSFRAFLR-FGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQ 319
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ R FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C L E +++ + + CK D+ + FG
Sbjct: 34 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CF+C C +
Sbjct: 91 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQ 127
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C L E +++ + + CK D+ + FG
Sbjct: 34 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CF+C C +
Sbjct: 91 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQ 127
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C L E +++ + + CK D+ + FG
Sbjct: 36 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CF+C C +
Sbjct: 93 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQ 129
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ R FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C L E +++ + + CK D+ + FG
Sbjct: 36 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CF+C C +
Sbjct: 93 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFSCVVCKRQ 129
>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG+ I +R L+ + WH DCL+C CDC L E ST + + N + CK+DY R FG
Sbjct: 455 CGGCGQLILERVQLQVDNCSWHVDCLRCCVCDCLL-EKDSTCFFRDNNVYCKQDYARQFG 513
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
C+ C++ I + + V RAR+ VYHL CFAC++C +
Sbjct: 514 VR--CSKCTRGIQSSDWVRRARDQVYHLACFACEECKRQ 550
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ R FG
Sbjct: 7 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 63
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 64 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 100
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ R FG
Sbjct: 20 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 76
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 77 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 113
>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
niloticus]
Length = 399
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 66 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 123
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 124 EDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 167
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ R FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + C+ D+ R FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCREDFFRRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + C+ D+ R FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCREDFFRRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
Length = 378
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 45 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 102
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 103 EDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 146
>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
Length = 380
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 45 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 102
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 103 EDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 146
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 6/109 (5%)
Query: 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
+P ++ PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A +
Sbjct: 7 LPLTSEIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVY 62
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK D+ + FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 63 CKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 109
>gi|348536383|ref|XP_003455676.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Oreochromis
niloticus]
Length = 333
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 66 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 123
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 124 EDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 167
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C L + +++A + CK D+ + F
Sbjct: 4 QCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRF 60
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA+C K IP ++V +A++ VYHL CFAC C+ +
Sbjct: 61 GTK--CASCQKGIPPMQVVRKAQDFVYHLHCFACIMCSRQ 98
>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
Length = 400
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 77/140 (55%), Gaps = 14/140 (10%)
Query: 9 HLKINRMSMDVKTQ---------QGAQQTKAVPN-NAQGPQECAGCGKHITDRFLLKALD 58
H I+ M KT+ +G +T+ +P+ ++ CAGCG I+DR+ L A+D
Sbjct: 12 HGVIDEMDRRTKTEAAAISSAIDRGETETQTMPSISSDRAALCAGCGGKISDRYYLLAVD 71
Query: 59 MYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEM 117
WH CLKC C+C+L E T ++K I CK DY R F S CA C I A EM
Sbjct: 72 KQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISASEM 128
Query: 118 VMRARNNVYHLECFACQQCN 137
VMRAR+ VYHL CF C CN
Sbjct: 129 VMRARDLVYHLNCFTCTTCN 148
>gi|225708026|gb|ACO09859.1| LIM/homeobox protein Lhx9 [Osmerus mordax]
Length = 317
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 14 RMSMDVKTQQGAQ---QTKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R D + +G Q + +P+ + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTDSRLAKGVQLNGRESTMPSMSPEKPALCAGCGGKISDRYYLLAVDKRWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRF--SVQRCARCHLGISASEMVMRARDSVYHL 155
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 156 SCFTCTTCN 164
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Query: 20 KTQQGAQQTKAVPNNAQGPQ--ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGE 77
+ Q GA A+ ++ P+ CAGC +HI DRF+LKALD +WH CLKC C L E
Sbjct: 11 REQPGAPGAAALCTFSRTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE 70
Query: 78 VGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+++ + CK D+ + FG+ CAAC IP ++V RA++ VYHL CFAC C
Sbjct: 71 ---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 125
Query: 138 HR 139
+
Sbjct: 126 RQ 127
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|47217395|emb|CAG00755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 5 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 62
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 63 EDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 106
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
Length = 390
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 23 QGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTL 82
+G + VP Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L +
Sbjct: 14 KGLSEMLGVPMQ-QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RC 68
Query: 83 YTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+++A + CK D+ + FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 69 FSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLPCFACIICNRQ 123
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACVICNRQ 123
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C L + +++A + CK D+
Sbjct: 27 QIPQ-CAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDF 82
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ CA+C + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 83 FKRFGTK--CASCQQGIPPMQVVRKAQDFVYHLHCFACIMCSRQ 124
>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
Length = 357
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKEDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 7 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 63
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 64 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 100
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 7 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 63
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 64 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 100
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 28 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 84
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 85 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 122
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 20 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 76
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 77 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 113
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
leucogenys]
Length = 415
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 73 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 129
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C AC + IP ++V +A++ VYHL CFAC CN
Sbjct: 130 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICN 165
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHIPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 105 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 161
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 162 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 199
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHIPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
Length = 415
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 4/122 (3%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
D+ Q QT V N + P CAGCG I DR+ L A+D WH +CLK CC+C++G
Sbjct: 38 FDINQHQHHMQTMPVLNKFESPSFCAGCGSRIFDRYYLMAVDKQWHVNCLK--CCECKIG 95
Query: 77 -EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQ 135
+ T + + I CK DY R + + C C + I A E+VMRA++ V+H+ CF C
Sbjct: 96 LDSELTCFARDGNIYCKEDYYRRY-AVKRCTRCHQGITANELVMRAKDLVFHINCFTCAS 154
Query: 136 CN 137
CN
Sbjct: 155 CN 156
>gi|291232097|ref|XP_002736028.1| PREDICTED: lim 1/5-like [Saccoglossus kowalevskii]
Length = 498
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 5/101 (4%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q CAGC + I DRFLL LD WH C++C C+C L + Y++ + C+ D++R
Sbjct: 3 QLCAGCDRPILDRFLLNVLDRAWHVKCVQCSDCNCTLSD---KCYSREGKLYCRTDFVRR 59
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+G+ CA CS I ++V RARN V+HL+CF C C+ +
Sbjct: 60 YGTK--CAGCSHGIAPNDLVRRARNKVFHLKCFTCMVCSKQ 98
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 3 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 58
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 59 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 100
>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
guttata]
Length = 436
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 23 QGAQQTKAVPN-NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
+G +T+ +P+ ++ CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 71 RGETETQTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESEL 128
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T ++K I CK DY R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 129 TCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 184
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 3 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 58
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 59 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 100
>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Ailuropoda melanoleuca]
Length = 365
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCTDCHAPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 3 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 59
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 60 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 97
>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
Length = 304
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCTDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESLYCKDDFFKRFG 72
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 73 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 109
>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
Length = 401
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 6/97 (6%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL-RLF 99
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ R F
Sbjct: 30 CAGCNQHIVDRFILKVLDRHWHGKCLKCSDCQAQLAE---KCFSRGDSVYCKDDFFKRRF 86
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 87 GTK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 121
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C L + +++A + CK D+ + F
Sbjct: 30 QCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRF 86
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA+C + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 87 GTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQ 124
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C L + +++A + CK D+ + F
Sbjct: 30 QCAGCSQHILDKFILKVLDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRF 86
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA+C + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 87 GTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACIMCSRQ 124
>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
Length = 290
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLK CCDC + +++ + CK D+ + FG
Sbjct: 32 CAGCDQHILDRFILKALDRHWHSQCLK--CCDCH-APLAERCFSRGESVYCKDDFFKRFG 88
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 89 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 125
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CL+C C L E +++ + CK D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLRCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 129
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CF+C CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQ 123
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRRESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|371573886|gb|AEX38313.1| Lhx3 [Mnemiopsis leidyi]
Length = 507
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + ITDRF+LK ++ WH CLKC C L ++ +++ + + CK D+ + +G
Sbjct: 126 CAGCDQPITDRFILKVMEKNWHSACLKCHDC---LAQLTDKCFSRGDFVYCKDDFYKRYG 182
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C KVIP ++V RA +V+H++CF C C+
Sbjct: 183 TK--CAKCEKVIPPSQVVRRAGGHVFHMDCFVCIICS 217
>gi|195119850|ref|XP_002004442.1| GI19612 [Drosophila mojavensis]
gi|193909510|gb|EDW08377.1| GI19612 [Drosophila mojavensis]
Length = 485
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P +CAGCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY
Sbjct: 158 RNPDDCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDY 216
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
FG T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 217 YSFFG-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 257
>gi|348536385|ref|XP_003455677.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Oreochromis
niloticus]
Length = 320
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCK 92
+ + P CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK
Sbjct: 66 SPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCK 123
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 124 EDYYRF--SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 166
>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
Length = 404
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ+G + ++ CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 32 TQKGGRSATMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLK--CCECKLNLESE 89
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T ++K I CK DY R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 90 LTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 146
>gi|195402627|ref|XP_002059906.1| apterous [Drosophila virilis]
gi|27374202|gb|AAN87274.1| ap [Drosophila virilis]
gi|194140772|gb|EDW57243.1| apterous [Drosophila virilis]
Length = 472
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P +CAGCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY
Sbjct: 145 RNPDDCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDY 203
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
FG T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 204 YSFFG-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 244
>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 452
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 25 AQQTKAVP--NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGST 81
A+ +A+P + + P CAGCG I DR+ L A+D WH CLK CC+C+L E T
Sbjct: 42 AEHGRAMPVVHPEEKPGVCAGCGGRIVDRYYLLAVDKQWHLHCLK--CCECKLRLESELT 99
Query: 82 LYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ K I CK+DY R F S CA C I A EMVMRAR+ V+HL CF C+ CN
Sbjct: 100 CFAKDGSIYCKQDYYRRF-SVKRCARCHLGISASEMVMRARDLVFHLNCFMCETCN 154
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 4 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 60
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CF+C CN +
Sbjct: 61 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFSCVICNRQ 98
>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
Length = 390
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GC I DRF+LK D WH CLKC C +L + Y++ + CK D+ + F
Sbjct: 34 KCSGCEHPILDRFILKVQDRAWHSKCLKCTDCQAQLSD---KCYSRGGQVYCKEDFFKRF 90
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C+AC + IP ++V RA++NVYHL+CFAC CN +
Sbjct: 91 GTK--CSACDQGIPPTQVVRRAQDNVYHLQCFACVMCNRQ 128
>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 390
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLVD---RCFSRAGSVYCKEDFFKRF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 8/106 (7%)
Query: 37 GPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
GP E CAGC +HI D+F+LK LD +WH CLKC C +L E + +A + CK
Sbjct: 20 GPGEIPQCAGCSQHILDKFILKVLDRHWHSSCLKCADCQMQLAE---RCFARAGSVYCKE 76
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
D+ + FG+ C AC + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 77 DFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQ 120
>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
Length = 391
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 30 QCAGCNQHILDKFILKVLDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 86
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 87 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 124
>gi|339961229|pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
gi|339961230|pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC DC++ ++ +++A + CK D+
Sbjct: 5 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCA--DCQM-QLADRCFSRAGSVYCKEDF 60
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 61 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 102
>gi|328925120|dbj|BAK19075.1| Bmptp-Z and Bmap-A fusion protein beta [Bombyx mori]
Length = 444
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 35 AQGPQE--CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILC 91
AQ P + CAGCG ITDR+ L AL+ WH CL+C C+C++ + Y + + I C
Sbjct: 124 AQPPADDPCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFC 181
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
K DY+RL+G CA C+ VI A E+VMRAR+ V+H+ CF+C CN
Sbjct: 182 KNDYIRLYGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCN 226
>gi|195027475|ref|XP_001986608.1| GH20430 [Drosophila grimshawi]
gi|193902608|gb|EDW01475.1| GH20430 [Drosophila grimshawi]
Length = 469
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+ P +CAGCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY
Sbjct: 143 RNPDDCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDY 201
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
FG T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 202 YSFFG-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
(Silurana) tropicalis]
Length = 533
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 5/109 (4%)
Query: 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
+P++ + + CAGCG I+DRFLL+ D WHE C+KC C L + T Y + +
Sbjct: 176 LPSDHKINEVCAGCGNTISDRFLLRVNDRSWHECCVKCAAC---LQILSGTCYYRNRQLY 232
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY +LF + C +C K + E++MR +NVYH+ CF C +C R
Sbjct: 233 CKEDYDKLFATK--CNSCLKTVLPSELIMRVLSNVYHVACFFCCECERR 279
>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
catus]
Length = 309
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CL+C C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLRCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|291290877|ref|NP_001167469.1| LIM homeobox 2 [Xenopus laevis]
gi|37720481|gb|AAN41461.1| LIM homeobox protein 2 [Xenopus laevis]
Length = 419
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 74 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCNTCN 168
>gi|301618805|ref|XP_002938795.1| PREDICTED: LIM/homeobox protein Lhx2-like [Xenopus (Silurana)
tropicalis]
Length = 419
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 74 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCNTCN 168
>gi|34733871|gb|AAQ81868.1| LIM homeobox gene protein 2 [Ambystoma mexicanum]
Length = 398
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCSTCN 147
>gi|328925116|dbj|BAK19073.1| apterous A splicing isoform type A [Bombyx mori]
Length = 376
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 35 AQGPQE--CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILC 91
AQ P + CAGCG ITDR+ L AL+ WH CL+C C+C++ + Y + + I C
Sbjct: 56 AQPPADDPCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFC 113
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
K DY+RL+G CA C+ VI A E+VMRAR+ V+H+ CF+C CN
Sbjct: 114 KNDYIRLYGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCN 158
>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
Length = 420
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLIL 90
P + + P CAGCG I DR+ L A+D WH CLK CC+C+L E T + K I
Sbjct: 3 PLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLK--CCECKLALESELTCFAKDGSIY 60
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CK DY R F S CA C I A EMVMRAR+ VYHL CF C C+
Sbjct: 61 CKEDYYRRF-SVQRCARCHLGISASEMVMRARDAVYHLSCFTCSTCS 106
>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
guttata]
Length = 399
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
Length = 596
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC HI DR++LK D WH CLKC C +L + +++ + + CK D+ + F
Sbjct: 194 KCTGCDHHIFDRYILKVQDKPWHSQCLKCNDCGRQLTD---KCFSRGSYVYCKEDFFKRF 250
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C+ C IP ++V RA++NVYHLECF C C+ +
Sbjct: 251 GTK--CSGCELAIPPTQVVRRAQDNVYHLECFRCFMCSEQ 288
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 7/117 (5%)
Query: 23 QGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTL 82
+G + AVP Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L +
Sbjct: 14 KGLPEMLAVPMQ-QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RC 68
Query: 83 YTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+++A CK D+ + FG+ C AC + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 69 FSRAGSFYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQ 123
>gi|328925118|dbj|BAK19074.1| Bmptp-Z and Bmap-A fusion protein alpha [Bombyx mori]
Length = 466
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 35 AQGPQE--CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILC 91
AQ P + CAGCG ITDR+ L AL+ WH CL+C C+C++ + Y + + I C
Sbjct: 124 AQPPADDPCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFC 181
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
K DY+RL+G CA C+ VI A E+VMRAR+ V+H+ CF+C CN
Sbjct: 182 KNDYIRLYGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCN 226
>gi|328925130|dbj|BAK19080.1| apterous A splicing isoform type C [Bombyx mori]
Length = 385
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 35 AQGPQE--CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILC 91
AQ P + CAGCG ITDR+ L AL+ WH CL+C C+C++ + Y + + I C
Sbjct: 56 AQPPADDPCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFC 113
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
K DY+RL+G CA C+ VI A E+VMRAR+ V+H+ CF+C CN
Sbjct: 114 KNDYIRLYGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCN 158
>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
Length = 396
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
Length = 396
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L E + +A + CK D+
Sbjct: 12 QIPQ-CAGCSQHILDKFILKVLDRHWHSSCLKCADCQMQLAE---RCFARAGSVYCKEDF 67
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 68 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQ 109
>gi|133778048|gb|AAI27382.2| LIM homeobox 2 [Danio rerio]
gi|182888988|gb|AAI64490.1| Lhx2 protein [Danio rerio]
Length = 396
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
Length = 408
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|328925128|dbj|BAK19079.1| apterous A splicing isoform type B [Bombyx mori]
Length = 398
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 6/106 (5%)
Query: 35 AQGPQE--CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILC 91
AQ P + CAGCG ITDR+ L AL+ WH CL+C C+C++ + Y + + I C
Sbjct: 56 AQPPADDPCAGCGCRITDRYYLLALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFC 113
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
K DY+RL+G CA C+ VI A E+VMRAR+ V+H+ CF+C CN
Sbjct: 114 KNDYIRLYGPK-RCARCNTVISASELVMRARDLVFHVHCFSCALCN 158
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 14 RMSMDVKTQQGAQQTKAVPNNAQGP----QECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
+M G K +P+ P +CAGC +HI D+F+LK LD +WH CLKC
Sbjct: 2 KMMQSAAVLPGESAVKGLPDILGVPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCA 61
Query: 70 CCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLE 129
C L + +++A + CK D+ + FG+ CA+C + IP ++V +A++ VYHL
Sbjct: 62 DCHALLAD---KCFSRAGNVYCKEDFFKRFGTK--CASCQQGIPPTQVVRKAQDFVYHLH 116
Query: 130 CFACQQCNHR 139
CFAC C+ +
Sbjct: 117 CFACVMCSRQ 126
>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
Length = 427
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 84 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 141
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 142 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 178
>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 397
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 9 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLVD---RCFSRAGSVYCKEDFFKRF 65
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 66 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 103
>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
Length = 389
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 93
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 94 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 130
>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
Length = 389
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 93
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 94 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 130
>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
Length = 404
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
Length = 385
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 93
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 94 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 130
>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
melanoleuca]
gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
familiaris]
gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
gorilla]
gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
Length = 475
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 126 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 183
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 184 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 220
>gi|449479889|ref|XP_004177057.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1
[Taeniopygia guttata]
Length = 419
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C++ I ++V RAR+ V+HL CF C CN +
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQ 97
>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
Length = 442
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L + +++ + + CK D+ + FG
Sbjct: 4 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL C AC C
Sbjct: 61 TK--CAACQQGIPPTQVVRRAQDFVYHLHCNACIVC 94
>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
leucogenys]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
melanoleuca]
Length = 404
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 146
>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
Length = 244
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 9/120 (7%)
Query: 24 GAQQTKAVPNNAQGP----QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVG 79
G K +P+ P +CAGC +HI D+F+LK LD +WH CLKC C L +
Sbjct: 10 GESAVKGLPDILGVPLQQIPQCAGCSQHILDKFILKVLDRHWHSKCLKCADCHALLAD-- 67
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+++A + CK D+ + FG+ CA+C + IP ++V +A++ VYHL CFAC C+ +
Sbjct: 68 -KCFSRAGNVYCKEDFFKRFGTK--CASCQQGIPPTQVVRKAQDFVYHLHCFACVMCSRQ 124
>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
Length = 365
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 106
>gi|340376253|ref|XP_003386648.1| PREDICTED: LIM/homeobox protein Lhx3-like [Amphimedon
queenslandica]
Length = 338
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I DRF+L+ D WH CL+C C C+L + Y+++ + CK D+ + FG
Sbjct: 93 CAGCNTRIFDRFILRVQDKSWHAKCLRCSDCQCQLSD---KCYSRSGQVYCKDDFSKRFG 149
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFAC 133
+ CA C + IP ++V RA+ NVYHL+CFAC
Sbjct: 150 T--RCAGCQQPIPPTQVVRRAQENVYHLQCFAC 180
>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
Length = 406
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
Length = 404
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 146
>gi|410979132|ref|XP_003995940.1| PREDICTED: LIM/homeobox protein Lhx2 [Felis catus]
Length = 484
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 106
>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
Length = 365
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 106
>gi|167859587|gb|ACA04748.1| Lim3 [Amphimedon queenslandica]
Length = 338
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I DRF+L+ D WH CL+C C C+L + Y+++ + CK D+ + FG
Sbjct: 93 CAGCNTRIFDRFILRVQDKSWHAKCLRCSDCQCQLSD---KCYSRSGQVYCKDDFSKRFG 149
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFAC 133
+ CA C + IP ++V RA+ NVYHL+CFAC
Sbjct: 150 T--RCAGCQQPIPPTQVVRRAQENVYHLQCFAC 180
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC C +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQ 123
>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
Length = 190
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI D+F+LK LD +WH CLKC DC++ ++ +++A + CK D+ + FG
Sbjct: 1 CAGCNQHILDKFILKVLDRHWHSSCLKCA--DCQM-QLADRCFSRAGSVYCKEDFFKRFG 57
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 58 TK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 94
>gi|321454866|gb|EFX66019.1| hypothetical protein DAPPUDRAFT_332621 [Daphnia pulex]
Length = 114
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 49/53 (92%)
Query: 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+LILCKRDYLR+FG++G CAAC K IPAFEMVMRA++NVYHL+CFACQQC+ R
Sbjct: 1 HLILCKRDYLRMFGTSGNCAACCKAIPAFEMVMRAKSNVYHLDCFACQQCHQR 53
>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 9 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 65
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CAAC IP ++V RA++ VYHL CFAC C
Sbjct: 66 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 100
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ + F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC C +
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICTRQ 123
>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
Length = 365
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 69
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 70 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 106
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D R F
Sbjct: 29 QCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDPDRRF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 86 GTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>gi|190613352|pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 63 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 119
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 120 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 156
>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
Length = 373
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|194758260|ref|XP_001961380.1| GF13843 [Drosophila ananassae]
gi|190622678|gb|EDV38202.1| GF13843 [Drosophila ananassae]
Length = 469
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
ECAGCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 147 ECAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 205
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 206 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>gi|49659006|emb|CAD37944.1| homeobox protein LHX [Suberites domuncula]
Length = 342
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I DRF+LK LD WH CL+C CD L + Y++ + CK D+ R FG
Sbjct: 119 CAGCHHPIVDRFILKVLDKPWHSKCLRCVDCDMLLTD---KCYSRDGEVFCKADFSRRFG 175
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C++ IP ++V RA+ NVYHL+CFAC C+ +
Sbjct: 176 T--RCAGCNQPIPPTQVVRRAQENVYHLQCFACFICSRQ 212
>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
Length = 420
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
S D A+QT V P CAGCG I DR+ L A+D WH +CLKC C
Sbjct: 35 FSGDAFPSSNAEQTMPVVAGEVEPAPCAGCGGKIIDRYYLLAVDKQWHINCLKCADCHLP 94
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
L + T + K I CK DY R F + C+ C + I A E+VMRAR +V+H+ CF C
Sbjct: 95 L-DSELTCFAKDGEIFCKEDYYRRF-AVKRCSRCHQAISANELVMRAREHVFHIGCFTCA 152
Query: 135 QCN 137
C+
Sbjct: 153 SCS 155
>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
Length = 402
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 26 QQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTK 85
++T V N P CAGCG I DR+ L A+D WH CLKC C RL + T + K
Sbjct: 44 ERTMPVINRENKPCICAGCGGRILDRYYLLAVDKQWHMQCLKCCECKLRL-DSELTCFAK 102
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
I CK DY R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 103 DGSIYCKDDYYRRF-SVKRCARCHLGISASEMVMRARDLVYHLSCFTCATCN 153
>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
Length = 417
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG+ I DR+ L A+D WH CLK CC+C+L E T ++K I CK DY R F
Sbjct: 74 CAGCGRKIADRYYLLAVDKQWHMRCLK--CCECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C C+
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCS 168
>gi|125810912|ref|XP_001361667.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|195154388|ref|XP_002018104.1| GL16944 [Drosophila persimilis]
gi|27374288|gb|AAO01041.1| ap-PA [Drosophila pseudoobscura]
gi|54636843|gb|EAL26246.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|194113900|gb|EDW35943.1| GL16944 [Drosophila persimilis]
Length = 469
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
N + +CAGCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK
Sbjct: 141 NTRNLDDCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKN 199
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY FG T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 200 DYYSFFG-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
Length = 417
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG+ I DR+ L A+D WH CLK CC+C+L E T ++K I CK DY R F
Sbjct: 74 CAGCGRKIVDRYYLLAVDKQWHMRCLK--CCECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C C+
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCS 168
>gi|357622660|gb|EHJ74086.1| apterous a [Danaus plexippus]
Length = 397
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG ITDR+ L AL+ WH CL+ CC+C++ + Y + + I CK DY RL+
Sbjct: 63 CAGCGARITDRYYLLALERRWHTPCLR--CCECKMPLDSEQRCYARDSNIFCKNDYFRLY 120
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
GS C+ C+ I A E+VMRAR+ V+H+ CF+C C+ R
Sbjct: 121 GSKR-CSRCNTTISASELVMRARDLVFHVHCFSCALCSAR 159
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+ +
Sbjct: 3 PQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFK 58
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
FG+ C AC + IP ++V +A++ VYHL CFAC C+
Sbjct: 59 RFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICS 96
>gi|193575711|ref|XP_001949543.1| PREDICTED: LIM/homeobox protein Lhx2-like [Acyrthosiphon pisum]
Length = 356
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
A P + CAGCG+ I DRF L A+DM WH CL+C C L + T Y++ I
Sbjct: 12 ADPEDGSNGACCAGCGRSIDDRFYLSAVDMCWHIGCLQCAECKLPL-DTELTCYSRHGNI 70
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
CK+DY RLF S CA C I A ++VMRA++ VYH+ECFAC C
Sbjct: 71 YCKQDYYRLF-SIKRCARCQGGIGACDLVMRAKDLVYHVECFACYAC 116
>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
Length = 423
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
C GCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 52 CGGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 110 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 146
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAG +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 4 CAGRDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 61 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 97
>gi|348508944|ref|XP_003442012.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 368
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGST 81
QQ T P G + CAGC I DRFLL+ + WHE C+KC C L + T
Sbjct: 12 QQPPSSTPFGPEYRGGGEVCAGCESPIADRFLLRVNERSWHETCVKCAVC---LSALTGT 68
Query: 82 LYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
Y++ L+ CK DY +LF C+AC +VI E++MR VYHL CF+C +C R
Sbjct: 69 CYSRDRLLYCKHDYEKLF--VRKCSACLQVIGRSELIMRVLGQVYHLGCFSCCECERR 124
>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 398
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 11/138 (7%)
Query: 8 EHLKINRMSMDVKT------QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYW 61
+H ++ R M + QQ T P+ G + CAGC I+DRFLL+ + W
Sbjct: 16 DHTEVMREGMKTEERQQSCLQQPPSSTPFGPDYRGGGEVCAGCESPISDRFLLRVNERSW 75
Query: 62 HEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRA 121
HE C+KC C L + T Y + L+ CK DY +LF C+AC +VI E++MR
Sbjct: 76 HETCVKCAVC---LSTLTGTCYCRDRLLYCKLDYEKLF--VRKCSACLQVIGRSELIMRV 130
Query: 122 RNNVYHLECFACQQCNHR 139
VYHL CF+C +C R
Sbjct: 131 LGQVYHLGCFSCCECERR 148
>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
Length = 611
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC I DRF+LK D WH LKC C +L E +++ NL+ CK D+ + F
Sbjct: 200 KCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRF 256
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC IP E++ RA++NVYHLE F C C+ +
Sbjct: 257 GTK--CTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEK 294
>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
Length = 459
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C C +L E + + + CK D+ + +
Sbjct: 62 KCGGCHELILDRFILKVSDRTWHAKCLQCSDCHIQLNE---KCFARNGQLFCKDDFFKRY 118
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CAAC IP ++V RA++NVYHL+CF C C+ +
Sbjct: 119 GTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQ 156
>gi|443690540|gb|ELT92649.1| hypothetical protein CAPTEDRAFT_219057 [Capitella teleta]
Length = 432
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG ITD+++L+ A D+ WH CL+C C+ L E T + + CKRDY+RLF
Sbjct: 17 CVGCGSQITDQYILRVAPDLEWHASCLRCTDCNQYLDE-SCTCFVRDGKTYCKRDYVRLF 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA CS+ + VMRA+N +YH++CF C C+ +
Sbjct: 76 GTK--CARCSQSFSKNDFVMRAKNKIYHIDCFRCIACSRQ 113
>gi|432876050|ref|XP_004072952.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oryzias latipes]
Length = 380
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG+ I DR+ L A+D WH CLK CC+C+L E T ++K I CK DY R F
Sbjct: 74 CAGCGRKIADRYYLLAVDKQWHMRCLK--CCECKLNLESELTCFSKDGSIYCKEDYYRRF 131
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
S CA C I A EMVMRAR+ VYHL CF C C
Sbjct: 132 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTC 167
>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
homeobox protein 3; AltName: Full=LIM/homeobox protein
LIM; Short=HrLIM
Length = 692
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC I DRF+LK D WH LKC C +L E +++ NL+ CK D+ + F
Sbjct: 281 KCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRF 337
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC IP E++ RA++NVYHLE F C C+ +
Sbjct: 338 GTK--CTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEK 375
>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
Length = 459
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C C +L E + + + CK D+ + +
Sbjct: 62 KCGGCHELILDRFILKVSDRTWHAKCLQCSDCHIQLNE---KCFARNGQLFCKDDFFKRY 118
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CAAC IP ++V RA++NVYHL+CF C C+ +
Sbjct: 119 GTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQ 156
>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 330
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 33 NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
+ G C GCG+ I DRF L A+D WH CLKC CD RL + T ++K I C+
Sbjct: 7 DTKPGSIACGGCGEKIQDRFFLHAVDRQWHSACLKCCECDVRL-DCELTCFSKDGRIYCR 65
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DY R F + C C I A EMVMRAR++VYHL CF C C+
Sbjct: 66 EDYYRRF-AVQRCGRCHLGITAREMVMRARDSVYHLACFTCVTCD 109
>gi|195425678|ref|XP_002061119.1| apterous [Drosophila willistoni]
gi|27374312|gb|AAO01060.1| ap-PA [Drosophila willistoni]
gi|194157204|gb|EDW72105.1| apterous [Drosophila willistoni]
Length = 469
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 148 DCAGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 206
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 207 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 243
>gi|227430299|ref|NP_001153058.1| LIM homeobox 2a [Danio rerio]
gi|226434001|gb|ACO56117.1| LIM homeodomain protein 2a [Danio rerio]
Length = 320
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I+DRF L A + WHE CLKC C L E T ++K I CK DY R F
Sbjct: 13 CAGCGALISDRFYLLAAERRWHERCLKCSACQTDL-ESELTCFSKHGDIYCKEDYYRRF- 70
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S+ CA C I A E+VMRAR+ VYHL CF+C C+
Sbjct: 71 SSQRCARCHLGISATEIVMRARDLVYHLSCFSCATCH 107
>gi|301780216|ref|XP_002925525.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Ailuropoda
melanoleuca]
Length = 540
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 37 GPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
G C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+RLFG CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|334853818|gb|AEH05849.1| Lhx3, partial [Capra hircus]
gi|334853820|gb|AEH05850.1| Lhx3, partial [Capra hircus]
Length = 124
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 4 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CAAC IP ++V RA++ VYHL CFAC C
Sbjct: 61 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 95
>gi|443696308|gb|ELT97041.1| hypothetical protein CAPTEDRAFT_43751, partial [Capitella teleta]
Length = 271
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG+ ITDR+ L+A++ WH +CL+C C L + T Y + I CK DY RLF
Sbjct: 2 CAGCGEKITDRYYLQAVERAWHANCLRCAQCKLPL-DSEVTCYARDGSIFCKEDYYRLF- 59
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C+ C I A E+VM+AR++VYH+ CF C C+
Sbjct: 60 AIKRCSGCHLAISANELVMKARDSVYHMNCFTCASCH 96
>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
Length = 426
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLK CC+C+L E T ++K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLK--CCECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I EMVMRAR+ VYHL CF C CN
Sbjct: 110 -SVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCN 146
>gi|76667074|dbj|BAE45356.1| LIM homeodomain type transcription factor Lhx2 [Danio rerio]
Length = 395
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T + K I CK +Y R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFDKDGSIYCKEEYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
Length = 361
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I DR+ L A+D WH CLK CC+C+L + T + + I CK DY R+F
Sbjct: 30 CAGCGGRIQDRYYLLAVDRQWHASCLK--CCECKLPLDTELTCFARDGNIYCKEDYYRMF 87
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
T C C I A E+VMRAR++VYHL CF+C C
Sbjct: 88 AVT-RCGRCQAGISANELVMRARDSVYHLHCFSCTSC 123
>gi|195353746|ref|XP_002043364.1| GM16501 [Drosophila sechellia]
gi|194127487|gb|EDW49530.1| GM16501 [Drosophila sechellia]
Length = 535
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 213 DCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 271
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 272 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 308
>gi|158297426|ref|XP_555680.3| AGAP007839-PA [Anopheles gambiae str. PEST]
gi|157015189|gb|EAL39724.3| AGAP007839-PA [Anopheles gambiae str. PEST]
Length = 141
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGP-QECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
N M + QQG Q + N GP + CAGCG IT+RF L ALD YWH CLKC CC
Sbjct: 54 NSMVSQMDGQQGFHQMNS--GNGGGPVKHCAGCGGKITERFFLHALDRYWHNSCLKCSCC 111
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRL 98
L ++GS+ YT++ +ILCK DY RL
Sbjct: 112 GAMLADIGSSCYTRSGMILCKADYSRL 138
>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG+ I DR+ L A+D WH CL+ CC+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGRKIVDRYYLLAVDKQWHMRCLR--CCECKLHLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C C+
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCS 147
>gi|193786574|dbj|BAG51357.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSSYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
Length = 568
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C C +L E + + + CK D+ + +
Sbjct: 174 KCGGCHELILDRFILKVSDRTWHAKCLQCSECRVQLNE---KCFARNGQLFCKDDFFKRY 230
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CAAC IP ++V RA++NVYHL+CF C C+ +
Sbjct: 231 GTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQ 268
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C DCR+ ++ + + + CK D+ + F
Sbjct: 100 KCGGCHELILDRFILKVADRTWHAKCLQCS--DCRI-QLTDKCFARNGQLFCKEDFFKRF 156
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C IP ++V RA++NVYHL+CF+C C
Sbjct: 157 GTK--CAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMC 191
>gi|281360182|ref|NP_001163058.1| apterous, isoform C [Drosophila melanogaster]
gi|17862966|gb|AAL39960.1| SD05618p [Drosophila melanogaster]
gi|272432345|gb|ACZ94338.1| apterous, isoform C [Drosophila melanogaster]
Length = 468
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 146 DCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 204
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 205 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 241
>gi|194864184|ref|XP_001970812.1| ap [Drosophila erecta]
gi|190662679|gb|EDV59871.1| ap [Drosophila erecta]
Length = 469
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 147 DCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 205
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 206 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>gi|24585889|ref|NP_724428.1| apterous, isoform A [Drosophila melanogaster]
gi|195580840|ref|XP_002080242.1| GD10352 [Drosophila simulans]
gi|231559|sp|P29673.1|APTE_DROME RecName: Full=Protein apterous
gi|7601|emb|CAA46276.1| developmental regulatory protein [Drosophila melanogaster]
gi|157822|gb|AAA28673.1| LIM-homeodomain apterous protein [Drosophila melanogaster]
gi|7302219|gb|AAF57314.1| apterous, isoform A [Drosophila melanogaster]
gi|28912908|gb|AAO61758.1| HL02012p [Drosophila melanogaster]
gi|194192251|gb|EDX05827.1| GD10352 [Drosophila simulans]
gi|220942502|gb|ACL83794.1| ap-PA [synthetic construct]
gi|220952712|gb|ACL88899.1| ap-PA [synthetic construct]
Length = 469
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 147 DCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 205
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 206 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>gi|405977546|gb|EKC41989.1| LIM/homeobox protein Lhx3 [Crassostrea gigas]
Length = 432
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 64/133 (48%), Gaps = 36/133 (27%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL- 98
+CAGCG+ I DRF+LK LD WH CL+C C RL + ++K + CK D+ R
Sbjct: 46 KCAGCGEPILDRFILKVLDRSWHSRCLQCHDCHARLSD---KCFSKGEKVFCKDDFFRWS 102
Query: 99 -----------------------------FGSTGY---CAACSKVIPAFEMVMRARNNVY 126
G+ Y CA C K IP E+V RA++NVY
Sbjct: 103 YVYLSMQPDLIGPLSDHGVTRPPKTVRERVGALRYGTKCAGCEKGIPPTEVVRRAQDNVY 162
Query: 127 HLECFACQQCNHR 139
HLECFAC C+ +
Sbjct: 163 HLECFACLMCSRQ 175
>gi|195475694|ref|XP_002090119.1| GE19443 [Drosophila yakuba]
gi|194176220|gb|EDW89831.1| GE19443 [Drosophila yakuba]
Length = 469
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 147 DCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 205
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 206 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
Length = 456
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C C +L E + + + CK D+ + +
Sbjct: 65 KCGGCHELILDRFILKVSDRTWHAKCLQCSECHVQLNE---KCFARNGQLFCKDDFFKRY 121
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CAAC IP ++V RA++NVYHL+CF C C+ +
Sbjct: 122 GTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCSRQ 159
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 13/130 (10%)
Query: 10 LKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
L+I R +M T Q+ K++ CAGC I DRF+LK +D WH CL+C
Sbjct: 124 LQIER-NMPQATNDSFQEQKSI-------SLCAGCDHPILDRFILKVVDRAWHAKCLRCV 175
Query: 70 CCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLE 129
C+ +L + +++ + CK D+ + FG+ C++C K I E+V RA +NVYHL
Sbjct: 176 DCNAQLTD---RCFSRDGGVFCKEDFFKRFGTK--CSSCEKGIAPTEIVRRALDNVYHLH 230
Query: 130 CFACQQCNHR 139
CF C C +
Sbjct: 231 CFCCIICTRQ 240
>gi|328925124|dbj|BAK19077.1| apterous B alpha [Bombyx mori]
Length = 349
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL 96
P ECAGCG I DR+ L A+D WH CL+ CC+CRL + T +++ I CK DY
Sbjct: 15 PDECAGCGGKIQDRYYLLAVDRQWHGSCLR--CCECRLPLDTELTCFSRDGNIYCKEDYY 72
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
RLF C C I A E+VMRAR+ VYHL CF C C
Sbjct: 73 RLF-CVKRCGRCCNGITANELVMRARDLVYHLNCFTCVAC 111
>gi|357622661|gb|EHJ74087.1| apterous [Danaus plexippus]
Length = 359
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL 96
P ECAGCG I DR+ L A+D WH CL+ CC+CRL + T +++ I CK DY
Sbjct: 15 PDECAGCGGRIQDRYYLLAVDRQWHGACLR--CCECRLPLDSELTCFSRDGNIYCKDDYY 72
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
RLF CA C I A E+VMRAR+ V+HL CF C C
Sbjct: 73 RLF-CVKRCARCGNGITANELVMRARDMVFHLTCFTCVAC 111
>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
Length = 555
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC K I D+FLL LD WH +C+KC C G + Y++ ILCK D+ R +G
Sbjct: 117 CAGCDKPIMDKFLLNVLDRAWHAECVKCADCH---GTLSDKCYSRDGKILCKPDFYRRYG 173
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
C C++ I ++V +AR+ V+HL CF C C
Sbjct: 174 KK--CNGCAQGISPTDLVRKARDKVFHLNCFTCMIC 207
Score = 35.4 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 39 QECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
++C GC + I+ L+ KA D +H +C C C +L G LY + N +CK DY+
Sbjct: 174 KKCNGCAQGISPTDLVRKARDKVFHLNCFTCMICRKQL-STGEELYVLEDNKFICKDDYI 232
>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 164 CAGCERPILDRFLLNVLDRAWHAKCVQCCECSCNLTE---KCFSRDGKLYCKMDFFRRFG 220
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I ++V +AR+ V+HL CF C CN +
Sbjct: 221 TK--CAGCLQGISPNDLVRKARSKVFHLNCFTCMVCNKQ 257
>gi|270004609|gb|EFA01057.1| hypothetical protein TcasGA2_TC003974 [Tribolium castaneum]
Length = 218
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I DR+ L A+D WH CLK CC+C+L + T + + I CK DY R+F
Sbjct: 30 CAGCGGRIQDRYYLLAVDRQWHASCLK--CCECKLPLDTELTCFARDGNIYCKEDYYRMF 87
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T C C I A E+VMRAR++VYHL CF+C C
Sbjct: 88 AVT-RCGRCQAGISANELVMRARDSVYHLHCFSCTSCG 124
>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 402
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC + I DRF+LK LD WH CL+C C +L + +++ + CK D+ R F
Sbjct: 40 KCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDDFFRRF 96
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA C + IP ++V RA++ +YHL+CFAC C +
Sbjct: 97 GTK--CAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQ 134
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
Length = 402
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC + I DRF+LK LD WH CL+C C +L + +++ + CK D+ R F
Sbjct: 40 KCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDDFFRRF 96
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA C + IP ++V RA++ +YHL+CFAC C +
Sbjct: 97 GTK--CAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQ 134
>gi|432853695|ref|XP_004067835.1| PREDICTED: LIM domain transcription factor LMO4-like [Oryzias
latipes]
Length = 165
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q AV + + CAGCG I DRFLL +D YWH CLKC CC +LGE+G++ Y
Sbjct: 6 GSSQPPAVGAGSLSWKRCAGCGGKIADRFLLYTMDTYWHSRCLKCSCCQAQLGEIGTSCY 65
Query: 84 TKANLILCKRDYLR 97
TK+ +ILC+ DY+R
Sbjct: 66 TKSGMILCRNDYIR 79
>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 373
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ + A + G CA CG+ I DR+LLK ++ WH CL+C C L + S+ Y
Sbjct: 78 GSPTSTASSVPSTGKNTCASCGQEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCY 136
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
K I CK DY FG+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 137 IKNKEIFCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSC 187
>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
Length = 414
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ A D+ WH CLKC CD L E T + + CKRDY RLF
Sbjct: 22 CVGCGSKIQDQYILRVAPDLEWHAACLKCADCDQFLDET-CTCFVREGKTYCKRDYARLF 80
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA C++ + VMRARN +YH++CF C C+
Sbjct: 81 GTK--CARCTESFSKNDFVMRARNKIYHIDCFRCVACS 116
>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 278
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKR 93
N+ +CAGC + I DRF+LK LD WH CL+C C +L + +++ + CK
Sbjct: 34 NSPNIPKCAGCEQVILDRFILKVLDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKD 90
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
D+ R FG+ CA C + IP ++V RA++ +YHL+CFAC C +
Sbjct: 91 DFFRRFGTK--CAGCGQGIPPTQVVRRAQDKIYHLQCFACIMCKRQ 134
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 13/130 (10%)
Query: 10 LKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
L+I R +M T Q+ K++ CAGC I DRF+LK +D WH CL+C
Sbjct: 64 LQIER-NMPQATNDSFQEQKSI-------SLCAGCDHPILDRFILKVVDRAWHAKCLRCV 115
Query: 70 CCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLE 129
C+ +L + +++ + CK D+ + FG+ C++C K I E+V RA +NVYHL
Sbjct: 116 DCNAQLTD---RCFSRDGGVFCKEDFFKRFGTK--CSSCEKGIAPTEIVRRALDNVYHLH 170
Query: 130 CFACQQCNHR 139
CF C C +
Sbjct: 171 CFCCIICTRQ 180
>gi|380027052|ref|XP_003697250.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis florea]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 33 NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS-TLYTKANLILC 91
NN G C GCG+ I +R+ L+A D WH CL+ CC CR+ T + + I C
Sbjct: 30 NNTDGVLGCGGCGREIAERWYLRAADRAWHCGCLR--CCHCRVPLAAELTCFARDGNIYC 87
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
K DY RLF G C+ C I A E+VMRAR+ VYH+ CF C C
Sbjct: 88 KEDYYRLF--AGRCSRCRAGISATELVMRARDLVYHVACFTCASC 130
>gi|354459446|pdb|2L4Z|A Chain A, Nmr Structure Of Fusion Of Ctip (641-685) To Lmo4-Lim1
(18-82)
Length = 123
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL A+D YWH CLKC C +LG++G++ YTK+ +ILC+ DY+RL
Sbjct: 62 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121
Query: 99 FG 100
FG
Sbjct: 122 FG 123
>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
rerio]
Length = 396
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
P++ G + CAGC I DRFLL+ ++ WHE C+KC C L T Y + L+ C
Sbjct: 51 PDHVGGGEVCAGCESPIADRFLLRVNELSWHETCVKCAVCRSAL---SGTCYCRDRLLYC 107
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K DY +LF C+AC + I E++MR VYHL CF+C +C R
Sbjct: 108 KHDYEKLF--VRKCSACLQAIGRSELIMRVLGQVYHLGCFSCCECERR 153
>gi|402589676|gb|EJW83607.1| beadex/dLMO protein [Wuchereria bancrofti]
Length = 101
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 44/52 (84%)
Query: 88 LILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ILC RDYLRLFG TG CAAC K IPAFE+VMRA++NVYHL CFACQ CN R
Sbjct: 1 MILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNVYHLRCFACQVCNQR 52
>gi|328787166|ref|XP_003250891.1| PREDICTED: LIM/homeobox protein Lhx9-like [Apis mellifera]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 33 NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS-TLYTKANLILC 91
NN G C GCG+ I +R+ L+A D WH CL+ CC CR+ T + + I C
Sbjct: 30 NNTDGVLGCGGCGREIAERWYLRAADRAWHCGCLR--CCHCRVPLAAELTCFARDGNIYC 87
Query: 92 KRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
K DY RLF G C+ C I A E+VMRAR+ VYH+ CF C C
Sbjct: 88 KEDYYRLF--AGRCSRCRAGISATELVMRARDLVYHVACFTCASC 130
>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 324
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA CG+ I D++LLK D+ WH CL C C LG ++ Y K + CK DY R +G
Sbjct: 55 CANCGEEIVDKYLLKVNDLCWHVRCLSCSVCHTSLGS-HTSCYIKEKEVFCKMDYFRRYG 113
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ +CA C + I + + V RA+ NVYHL CFAC C
Sbjct: 114 T--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSC 147
>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
Length = 306
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 12/134 (8%)
Query: 7 LEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLK-ALDMYWHEDC 65
++ + +N +V+ G ++ G C GCG I D+F+L+ + D+ WH C
Sbjct: 5 MKRIDVNPPPANVQVDAGTEKP--------GTATCVGCGSQIHDQFILRVSPDLEWHAAC 56
Query: 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNV 125
LKC C L E T + + CKRDY+RLFG CA C + ++VMRAR++V
Sbjct: 57 LKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSSDLVMRARDSV 113
Query: 126 YHLECFACQQCNHR 139
YH+ECF C C+ +
Sbjct: 114 YHIECFRCSVCSRQ 127
>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
Length = 199
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA CG+ ITDRFL++ WH CL+C C L S + +A I C+ DY R FG
Sbjct: 1 CAACGELITDRFLIQVSGRTWHSTCLRCSVCRTALDNQPS-CFVRAGAIYCRADYTRTFG 59
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA CS+ I A + V RAR +VYHL CFAC C
Sbjct: 60 AK--CARCSRSISAADWVRRAREHVYHLACFACDAC 93
>gi|51950036|gb|AAH82433.1| MGC83364 protein [Xenopus laevis]
Length = 96
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ YT
Sbjct: 7 SSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYT 66
Query: 85 KANLILCKRDYLRLF 99
K+ +ILC+ DY+ F
Sbjct: 67 KSGMILCRNDYISTF 81
>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
Length = 402
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA CS+ I ++V +ARN V+HL CF C CN
Sbjct: 62 TK--CAGCSQGISPSDLVRKARNKVFHLNCFTCMVCN 96
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 40 ECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
+CAGC + I+ L+ KA + +H +C C C+ +L G LY N +CK DYL
Sbjct: 63 KCAGCSQGISPSDLVRKARNKVFHLNCFTCMVCNKQLS-TGEELYIIDENKFVCKEDYL 120
>gi|345132131|gb|AEN75258.1| Lim1 [Neanthes arenaceodentata]
Length = 498
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ C +CR + +++ + C+ D+ R FG
Sbjct: 26 CAGCERPILDRFLLNVLDRAWHAKCVQ--CVECR-SNLTDKCFSRDGKLYCREDFFRRFG 82
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C CS+ I ++V RARN V+HL+CF C C
Sbjct: 83 TK--CGGCSQGISPNDLVRRARNKVFHLKCFTCMVC 116
>gi|328708271|ref|XP_001949712.2| PREDICTED: LIM/homeobox protein Awh-like [Acyrthosiphon pisum]
Length = 346
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC ITDRFLLK D WH CL+C C+ L E + + K + I C++DY R F
Sbjct: 60 QCRGCSDPITDRFLLKVSDKIWHVSCLRCCVCNLVL-EDEPSCFIKDDSIYCRQDYARSF 118
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+ CSK I A V +AR++VYHL CF C C+
Sbjct: 119 GTV--CSKCSKGISASHWVRKARDHVYHLACFRCDACD 154
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFL++ ++ WHE CL+C C L + Y K + CK DY +LFG
Sbjct: 41 CAGCQQPIEDRFLMRVMENSWHEQCLQCSVCQSPLSR---SCYFKDRKLYCKGDYEKLFG 97
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C C + I + E+VMRA NVYHL CF C CN R
Sbjct: 98 TK--CNGCLQSITSNELVMRALCNVYHLRCFNCIICNQR 134
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+C GC + IT + +++AL +H C C C+ RL + G + N + CK DY +
Sbjct: 99 KCNGCLQSITSNELVMRALCNVYHLRCFNCIICNQRL-QKGDEFVVRDNQLFCKVDYEKE 157
Query: 99 FGS 101
+GS
Sbjct: 158 YGS 160
>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
occidentalis]
Length = 408
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGCG I DRF+LK L+ WH CLKC C L + + +A + CK D+ + +
Sbjct: 53 KCAGCGDIILDRFILKVLERPWHSKCLKCSDCQAPL---ANKCFARAGHLYCKDDFFKRY 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C + IP ++V RA+ NVYHL CF+C C
Sbjct: 110 GTK--CAGCEQGIPPTQVVRRAQENVYHLACFSCILC 144
>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
purpuratus]
Length = 474
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTL--YTKANLILCK 92
A P CAGCG I DRF L A D WH CL+ CC+C + ++ S L + K I CK
Sbjct: 48 AGSPAVCAGCGGRICDRFYLLAADRQWHTQCLQ--CCECNV-QLDSELSCFAKEGNIYCK 104
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DYL+ +G CA C I + EMVMRAR VYHL CF+C CN
Sbjct: 105 EDYLKRYG-IKKCARCHVGIESHEMVMRARELVYHLACFSCAVCN 148
>gi|319740961|gb|ADV69000.1| lim-homeobox 2/9 [Patiria miniata]
Length = 304
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 26 QQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYT 84
QQ + P CAGCG I DR+ L A D WH +CL+C C+C++ + T +
Sbjct: 33 QQHRPPPYEKSKACMCAGCGGPIQDRYYLLAADQQWHTECLRC--CECKVTLDNELTCFA 90
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
K I CK Y R FG CA C I A EMVMRAR+ VYHL CF C C+
Sbjct: 91 KDGGIYCKEHYFRRFG-VKKCARCGTGIAAHEMVMRARSLVYHLSCFTCSACS 142
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 13/119 (10%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS 80
++QGA K +P C+GC +HI D+F+LK LD +WH CLK CC+C++
Sbjct: 27 SRQGAM-PKEIPR-------CSGCNEHILDKFILKVLDRHWHSACLK--CCECQVPLAER 76
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
Y N + CK D+ + FG+ C AC + IP ++V +A++ VYHL CF+C C+ +
Sbjct: 77 CFYRAGN-VYCKEDFFKCFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFSCIICSRQ 132
>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
Length = 292
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG I D+FLLK + WH CL+C C LG +T YT+ + CK DY+R FG
Sbjct: 51 CTGCGGPIQDKFLLKVGERQWHVKCLRCSVCQTPLGR-HTTCYTREADVFCKADYIRQFG 109
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I + + V RA+ +VYHL CFAC C +
Sbjct: 110 TK--CAKCCRNIQSNDWVRRAKTHVYHLACFACDACKRQ 146
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DR+++K + WHE CL C C L ++ Y++ I CK DY RLFG
Sbjct: 59 CAGCERPIVDRYIMKVRESSWHESCLICSVCHQHL---ATSCYSRERRIFCKNDYDRLFG 115
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFAC 133
+ CAAC+ I E+VM+A + VYHL CF C
Sbjct: 116 AK--CAACTGSIAPAELVMKALDQVYHLSCFLC 146
>gi|167859072|gb|ACA04471.1| Lhx2 [Strongylocentrotus purpuratus]
Length = 251
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTL--YTKANLILCK 92
A P CAGCG I DRF L A D WH CL+ CC+C + ++ S L + K I CK
Sbjct: 45 AGSPAVCAGCGGRICDRFYLLAADRQWHTQCLQ--CCECNV-QLDSELSCFAKEGNIYCK 101
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
DYL+ +G CA C I + EMVMRAR VYHL CF+C CN
Sbjct: 102 EDYLKRYG-IKKCARCHVGIESHEMVMRARELVYHLACFSCAVCN 145
>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
domestica]
Length = 359
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++LK + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILKVSPDLEWHAACLKCAECSQYLDET-CTCFVRNGKTYCKRDYIRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR NVYH+ECF C C+ +
Sbjct: 86 GIK--CAKCKVGFSSSDLVMRARENVYHIECFRCSVCSRQ 123
>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G CA CG+ I DR+LLK ++ WH CL+C C L + S+ Y K I CK DY
Sbjct: 42 GKNVCASCGQEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYF 100
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
FG+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 101 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSC 138
>gi|224994808|ref|NP_001139341.1| apterous a [Tribolium castaneum]
gi|224459212|gb|ACN43341.1| apterous a [Tribolium castaneum]
Length = 465
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Query: 47 HITDRFLLKALDMYWHEDCLKCGCCDCRL---GEVGSTLYTKANLILCKRDYLRLFGSTG 103
ITDRF L+A+D WH CL+ CC CR GE+ T +++ I CK+DY RLFG
Sbjct: 136 RITDRFYLQAVDRRWHASCLQ--CCQCRNTLDGEI--TCFSRDGNIYCKKDYYRLFGMK- 190
Query: 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA C I + E+VMRAR+ V+H+ CF+C CN
Sbjct: 191 RCARCQATIISSELVMRARDLVFHVHCFSCAVCN 224
>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
harrisii]
Length = 335
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++LK + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 2 CVGCGTQIHDQYILKVSPDLEWHAACLKCAECSQYLDET-CTCFVRNGKTYCKRDYIRLF 60
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C + ++VMRAR NVYH+ECF C C+
Sbjct: 61 GIK--CAKCKVGFSSSDLVMRARENVYHIECFRCSVCS 96
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK LD WH CL C C G + + + + CK D+ + F
Sbjct: 23 KCGGCQELILDRFILKVLDRTWHAKCLNCNDCG---GPLTDKCFARNGQVYCKDDFFKRF 79
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C + IP ++V RA+ NVYHL+CFAC C
Sbjct: 80 GTK--CAGCEQGIPPTQVVRRAQENVYHLQCFACAMC 114
>gi|149026131|gb|EDL82374.1| LIM domain only 4, isoform CRA_b [Rattus norvegicus]
gi|149026132|gb|EDL82375.1| LIM domain only 4, isoform CRA_b [Rattus norvegicus]
Length = 81
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLF 99
K+ +ILC+ DY+R+
Sbjct: 67 KSGMILCRNDYIRVL 81
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G C GCG I DR+LL+ + WHE CL+C C L + + K +LCK DY
Sbjct: 11 GKSLCCGCGLTIEDRYLLRVMGNSWHERCLQCDFCRAPLTR---SCFVKNGRLLCKLDYD 67
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
RL+ + C+AC + +P+ E+VMRA +V+HL+CF C C H+
Sbjct: 68 RLYAAR--CSACVQTVPSNELVMRAVGHVFHLQCFVCVACGHQ 108
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 33 NNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK 92
+G AGC + I DRF LKAL +WH CLKC C L E +++ + CK
Sbjct: 26 GRTRGTPRWAGCAQPILDRFTLKALGRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCK 82
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
D+ + FG+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 83 DDFFKRFGTK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
Length = 436
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 47 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 103
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA+++VYHL+CF C C+
Sbjct: 104 GTK--CSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCS 139
>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
Length = 402
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSRDSKLYCKTDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA CS I ++V +ARN V+HL CF C CN
Sbjct: 62 TK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCN 96
>gi|242023961|ref|XP_002432399.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
gi|212517822|gb|EEB19661.1| LIM/homeobox protein Lhx2, putative [Pediculus humanus corporis]
Length = 383
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P CAGCG I DR+ L A+D WH CLKC C L + T + + I CK DY R
Sbjct: 28 PTACAGCGGRILDRYYLLAVDRQWHSPCLKCTECKSPL-DTELTCFARDGNIYCKEDYYR 86
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
LF + C+ C I A E+VMRA++ V+H+ CF C C
Sbjct: 87 LF-AIKRCSRCQTGISASELVMRAKDMVFHINCFTCTSC 124
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 22 QQGAQQTKAVPNNAQGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS 80
QQ T P+ G E CAGC I DRFLL+ + WHE C+KC C L +
Sbjct: 12 QQPPPSTPFGPDFRGGGGELCAGCEAPIADRFLLRVNERSWHETCVKCAVC---LSALTG 68
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
T Y + L+ CK DY +LF C++C +VI E++MR + VYHL CF C +C R
Sbjct: 69 TCYCRDRLLYCKHDYEKLF--VRKCSSCLQVIGRSELIMRVQGQVYHLGCFTCCECERR 125
>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
Length = 338
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C + I D++LLK D+ WH CL C C LG S Y K I CK DY R +G
Sbjct: 55 CANCNEEIVDKYLLKVNDLCWHVRCLSCSVCQTSLGSHAS-CYIKEKEIFCKLDYFRRYG 113
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ +CA C + I + + V RA+ NVYHL CFAC C
Sbjct: 114 T--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSC 147
>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
rubripes]
Length = 359
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 36 QGPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
QG C GCG I D+++LK + D+ WH CLKC C L E T + + CKRD
Sbjct: 22 QGFAMCVGCGSQIHDQYILKVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRD 80
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
Y+RLFG CA C+ + ++VMRAR++VYH+ECF C C+
Sbjct: 81 YVRLFGIK--CAKCNLGFSSSDLVMRARDHVYHIECFRCSVCS 121
>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
Length = 402
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA CS I ++V +ARN V+HL CF C CN
Sbjct: 62 TK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCN 96
>gi|143347140|gb|ABO93218.1| Lhx2 [Platynereis dumerilii]
Length = 280
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCR 74
+ + Q +QT V P CA CG I DR+ L A+D WH +CLKC C
Sbjct: 23 LPYHTDSYQPTEQTMPVVAGEVEPAPCAACGGKIIDRYYLLAVDKQWHINCLKCADCHLP 82
Query: 75 LGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQ 134
L + T + K I CK DY R F + C+ C I A E+VMRAR +V+H+ CF C
Sbjct: 83 L-DSELTCFAKDGDIYCKEDYYRRFAAK-RCSRCHLAISANELVMRAREHVFHIGCFTCA 140
Query: 135 QC 136
C
Sbjct: 141 SC 142
>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
niloticus]
Length = 360
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 86 GIK--CAKCNLGFSSSDLVMRARDNVYHIECFRCSVCS 121
>gi|345806104|ref|XP_548461.3| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Canis lupus
familiaris]
Length = 397
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 93
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 94 LNGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 138
>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ A D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 17 CVGCGSQIHDQYILRVAPDLEWHASCLKCADCHMYLDE-KCTCFVREGKTYCKRDYVRLF 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA CS + VMRARN +YH++CF C C+ +
Sbjct: 76 GTK--CAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQ 113
>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
Short=x-Lhx1; Short=xLIM-1
gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
Length = 403
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|297685312|ref|XP_002820236.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pongo abelii]
Length = 414
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 LHGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 155
>gi|170039913|ref|XP_001847762.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863504|gb|EDS26887.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 174
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 33 NNAQGP-QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILC 91
NN GP + CAGCG IT+RF L ALD YWH +CLKC CC L ++GS+ YT++ +ILC
Sbjct: 75 NNGAGPVKHCAGCGGKITERFFLHALDRYWHNNCLKCSCCGAMLADIGSSCYTRSGMILC 134
Query: 92 KRDYLRLFGS 101
K DY L S
Sbjct: 135 KGDYSSLLWS 144
>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
AV + + + C GC I DR+L+K WH CLKC C LG +T YTK I
Sbjct: 17 AVDHVSTQGERCVGCEAKIVDRYLVKVSGRAWHTKCLKCCLCSDELGR-EATCYTKDGKI 75
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
CK DY R FG+ CA C + I A + V RA+N VYHL CFAC C
Sbjct: 76 YCKADYARQFGTK--CARCGRSIHANDWVRRAKNCVYHLACFACDNC 120
>gi|440908262|gb|ELR58305.1| LIM/homeobox protein Lhx2, partial [Bos grunniens mutus]
Length = 410
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 50 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 107
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 108 LDGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 152
>gi|402896426|ref|XP_003911301.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Papio anubis]
Length = 414
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 LHGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 155
>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|332229977|ref|XP_003264162.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Nomascus
leucogenys]
Length = 414
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 LHGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 155
>gi|431898812|gb|ELK07182.1| LIM/homeobox protein Lhx2 [Pteropus alecto]
Length = 414
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 FDGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 155
>gi|281349042|gb|EFB24626.1| hypothetical protein PANDA_015045 [Ailuropoda melanoleuca]
Length = 329
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 8 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 66
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 67 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 104
>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
AltName: Full=xLIM-2A
gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
Length = 402
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA CS I ++V +ARN V+HL CF C CN
Sbjct: 62 TK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCN 96
>gi|403299864|ref|XP_003940694.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 93
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 94 LHGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 138
>gi|395824163|ref|XP_003785340.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Otolemur garnettii]
Length = 414
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 110
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 LHGLYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 155
>gi|34733869|gb|AAQ81867.1| islet 2 [Ambystoma mexicanum]
Length = 361
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
PN C GCG I D F+++ + D+ WH CLKC C L E T + +
Sbjct: 18 PNKKHTLALCVGCGSQIHDPFIMRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTY 76
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CKRDY+RLFG CA C + ++VMRAR VYH+ECF C CN
Sbjct: 77 CKRDYIRLFGVK--CAQCGLGFSSSDLVMRARERVYHMECFRCSLCN 121
>gi|397473228|ref|XP_003808119.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pan paniscus]
gi|426362990|ref|XP_004048631.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Gorilla gorilla
gorilla]
gi|21753589|dbj|BAC04371.1| unnamed protein product [Homo sapiens]
gi|119607983|gb|EAW87577.1| LIM homeobox 2, isoform CRA_b [Homo sapiens]
Length = 397
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 36 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 93
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 94 LHGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 138
>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 338
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C + I D++LLK D+ WH CL C C LG ++ Y K + CK DY R +G
Sbjct: 55 CASCNEEIVDKYLLKVNDLCWHVRCLSCSVCQTSLGS-HTSCYIKEKEVFCKLDYFRRYG 113
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ +CA C + I + + V RA+ NVYHL CFAC C
Sbjct: 114 T--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSC 147
>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
Length = 363
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 86 GIK--CAKCNLGFSSSDLVMRARDNVYHIECFRCSVCS 121
>gi|444512970|gb|ELV10228.1| LIM domain transcription factor LMO4 [Tupaia chinensis]
Length = 105
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLR 97
K+ +ILC+ DY+R
Sbjct: 67 KSGMILCRNDYIR 79
>gi|397496393|ref|XP_003819022.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Pan paniscus]
Length = 357
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 37 GPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
G C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+RLFG CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|260447067|ref|NP_001159513.1| ISL LIM homeobox 2 [Xenopus (Silurana) tropicalis]
gi|257043811|gb|ACV33233.1| islet 2 [Xenopus (Silurana) tropicalis]
Length = 333
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 32 PNNAQGPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLIL 90
P G C GCG HI D+++L+ + D+ WH CLKC C L E T + +
Sbjct: 18 PKKKAGLAVCVGCGSHILDQYILRVSPDLEWHAACLKCAECSQYLDE-NCTCFVRDGKTY 76
Query: 91 CKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CKRDY+RLF + C C +P E+VMR VYH +CF C C+ R
Sbjct: 77 CKRDYIRLF--SARCPRCQGTLPRSELVMRVGERVYHTDCFRCSVCSRR 123
>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
Length = 272
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
493 [Rattus norvegicus]
Length = 360
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Query: 37 GPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
G C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY
Sbjct: 23 GTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+RLFG CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 82 VRLFGIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Ovis aries]
Length = 366
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrotus purpuratus]
Length = 480
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q CAGC + I DRFLL LD WH C++C C +L E +++ + CK D+ R
Sbjct: 3 QVCAGCERPILDRFLLNVLDRPWHVKCVQCCECKAKLTE---KCFSREGKLFCKNDFFRR 59
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+G+ CA C + I ++V RAR+ V+HL CF C C
Sbjct: 60 YGTK--CAGCLQGILPSDLVRRARSKVFHLNCFTCMVC 95
>gi|444723048|gb|ELW63713.1| LIM/homeobox protein Lhx5 [Tupaia chinensis]
Length = 610
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C++ I ++V +AR+ V+HL CF C CN +
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQ 98
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 52/149 (34%)
Query: 40 ECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL- 96
+CAGC + I+ L+ KA +H +C C C+ +L G LY N +CK DYL
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQL-STGEELYVIDENKFVCKDDYLS 121
Query: 97 ----------------------------------------------RLFGSTGYCAACSK 110
R FG+ CA C++
Sbjct: 122 SSSLKEGSLNSGFRRPKQEVRSHPAWLYGFQSFVELRAEFALSSPGRRFGTK--CAGCAQ 179
Query: 111 VIPAFEMVMRARNNVYHLECFACQQCNHR 139
I ++V +AR+ V+HL CF C CN +
Sbjct: 180 GISPSDLVRKARSKVFHLNCFTCMVCNKQ 208
>gi|47551255|ref|NP_999810.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
gi|33286229|gb|AAQ01662.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
Length = 480
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q CAGC + I DRFLL LD WH C++C C +L E +++ + CK D+ R
Sbjct: 3 QVCAGCERPILDRFLLNVLDRPWHVKCVQCCECKAKLTE---KCFSREGKLFCKNDFFRR 59
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+G+ CA C + I ++V RAR+ V+HL CF C C
Sbjct: 60 YGTK--CAGCLQGILPSDLVRRARSKVFHLNCFTCMVC 95
>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
Length = 403
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 1 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 57
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 58 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 92
>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
boliviensis]
gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein LMX-2; AltName:
Full=Homeobox protein Lim-1
gi|2144068|pir||I58187 homeotic protein lim-1 - rat
gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|10257388|dbj|BAB13725.1| transcription factor HpLim1 [Hemicentrotus pulcherrimus]
Length = 480
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q CAGC + I DRFLL LD WH C++C C +L E +++ + CK D+ R
Sbjct: 3 QVCAGCERPILDRFLLNVLDRPWHVKCVQCCECKAKLTE---KCFSREGKLFCKNDFFRR 59
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+G+ CA C + I ++V RAR+ V+HL CF C C
Sbjct: 60 YGTK--CAGCLQGILPSDLVRRARSKVFHLNCFTCMVC 95
>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ A D+ WH CLKC C C + T + + CKRDYLRLF
Sbjct: 51 CVGCGGSIQDQYILRVAPDLEWHAACLKCADC-CTYLDETCTCFVRDGKPYCKRDYLRLF 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA CS+ + VMRARN +YH++CF C C+ +
Sbjct: 110 GTK--CAKCSQGFTKNDFVMRARNKIYHIDCFRCVACSRQ 147
>gi|338720511|ref|XP_001502198.3| PREDICTED: LIM/homeobox protein Lhx2-like [Equus caballus]
Length = 373
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 60/106 (56%), Gaps = 12/106 (11%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYL--- 96
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY
Sbjct: 12 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYSPS 69
Query: 97 -----RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
R F S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 70 LDGPYRRF-SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 114
>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
Length = 374
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
QG C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY
Sbjct: 88 QGKSVCSNCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIYCKLDY 146
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
R +G+ C+ C + I A + V RA+ NVYHL CFAC C
Sbjct: 147 FRRYGTR--CSRCGRHIHATDWVRRAKGNVYHLACFACYSC 185
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
leucogenys]
Length = 374
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
..292 [Gallus gallus]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|405975209|gb|EKC39790.1| LIM/homeobox protein Lhx5 [Crassostrea gigas]
Length = 471
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CA C + I DRFLL LD WH C++C C L + +++ + C+ D+ R F
Sbjct: 3 QCAACDRPILDRFLLNVLDRAWHAKCVQCSDCKTTLTD---KCFSRDGKLFCRNDFFRRF 59
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C++ I ++V RARN V+HL+CF C C
Sbjct: 60 GTK--CAGCTQGISPNDLVRRARNKVFHLKCFTCIIC 94
>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
[Ailuropoda melanoleuca]
Length = 405
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 406
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
mulatta]
Length = 359
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|449268595|gb|EMC79451.1| LIM/homeobox protein Lhx2 [Columba livia]
Length = 416
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 60/114 (52%), Gaps = 19/114 (16%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRGG 110
Query: 100 G----------------STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 GMHLSPSLLAVLFYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 164
>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
Length = 260
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
troglodytes]
gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
gorilla gorilla]
gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
sapiens]
gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
Length = 359
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
Length = 359
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
troglodytes]
gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
gorilla gorilla]
Length = 360
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAQCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 407
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C CS+ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CGGCSQGISPNDLVRRARSKVFHLNCFTCMMCN 95
>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
Length = 359
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C + ++VMRAR++VYH+ECF C C+
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCS 121
>gi|345487079|ref|XP_001599685.2| PREDICTED: LIM/homeobox protein Lhx9-like [Nasonia vitripennis]
Length = 406
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 28 TKAVPNNAQGPQ-ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS-TLYTK 85
+ V + GP C GCG+ I +R+ L+A D WH CL+C C CRL T + +
Sbjct: 32 STTVSQPSSGPSLACGGCGREIAERWYLRAADRPWHCGCLRC--CHCRLPLAAELTCFAR 89
Query: 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
I CK DY RLF + C+ C I A E+VMRAR+ VYH+ CF C C
Sbjct: 90 DGNIYCKEDYYRLF-AVSRCSRCRAGISATELVMRARDLVYHVACFTCASCG 140
>gi|354507122|ref|XP_003515607.1| PREDICTED: LIM domain transcription factor LMO4-like [Cricetulus
griseus]
gi|344245958|gb|EGW02062.1| LIM domain transcription factor LMO4 [Cricetulus griseus]
Length = 79
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLR 97
K+ +ILC+ DY+R
Sbjct: 67 KSGMILCRNDYIR 79
>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 360
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 37 GPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
G C GCG I D F+L+ + D+ WH CLKC C L E T + + CKRDY
Sbjct: 23 GTATCVGCGSQIHDPFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+RLFG CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
Length = 405
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPNDLVRRARSKVFHLNCFTCMMCN 95
>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 359
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 37 GPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
G C GCG I D F+L+ + D+ WH CLKC C L E T + + CKRDY
Sbjct: 23 GTATCVGCGSQIHDPFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDY 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+RLFG CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 82 VRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
Length = 902
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+GCG I DR+LL+ +WH +CL+C C L ++ S Y K + + CK Y R F
Sbjct: 623 CSGCGNLIYDRYLLQVNQQFWHVNCLRCSSCTALLDKLPSC-YLKEDKVFCKMCYQRQFS 681
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
C C++VI + V RAR VYHL CFAC C +
Sbjct: 682 VK--CDRCNQVIQSNHWVRRARQYVYHLACFACDSCQRQ 718
>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 375
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G CA CG I DR+LLK ++ WH CL+C C L + S+ Y K I CK DY
Sbjct: 93 GKNLCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYF 151
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
FG+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 152 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSC 189
>gi|56185681|gb|AAV84105.1| apterous [Euprymna scolopes]
Length = 423
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P CAGCG IT+R+ L + WH +CLKC C L + + Y + C+ DY R
Sbjct: 89 PFICAGCGDLITERYYLNVANNAWHFNCLKCYECKSTL-DTERSCYERMGNYYCRDDYQR 147
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
LF ST CA C+ I + ++VMRARN+VYHL CF C CN
Sbjct: 148 LF-STQRCARCNMGIQSTDLVMRARNHVYHLTCFTCFTCN 186
>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
Length = 375
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 59/107 (55%), Gaps = 5/107 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP+ G CA CG I DR+LLK ++ WH CL+C C L + S+ Y K I
Sbjct: 88 SVPST--GKNVCASCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEI 144
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
CK DY FG+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 145 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSC 189
>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
gi|1094403|prf||2106150A LIM domain homeobox protein
Length = 340
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ A D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 9 CVGCGSQIHDQYILRVAPDLEWHAACLKCSECSQYLDET-CTCFVRDGKTYCKRDYVRLF 67
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 68 GIK--CAKCNIGFCSSDLVMRARDNVYHMECFRCSVCS 103
>gi|159162672|pdb|1M3V|A Chain A, Flin4: Fusion Of The Lim Binding Domain Of Ldb1 And The
N- Terminal Lim Domain Of Lmo4
Length = 122
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 46/61 (75%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I DRFLL A+D YWH CLKC C +LG++G++ YTK+ +ILC+ DY+RL
Sbjct: 6 KRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 65
Query: 99 F 99
F
Sbjct: 66 F 66
>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
Length = 359
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFGSSDLVMRARDSVYHIECFRCSVCSRQ 123
>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
Length = 358
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ A D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILRVAPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 86 GIK--CANCNIGFCSSDLVMRARDNVYHMECFRCSVCS 121
>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
Length = 404
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCRQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|405971990|gb|EKC36789.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 319
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I D++L K D WHE+CL+C CRL G T Y+K + CK DY +L
Sbjct: 13 ETCAGCGYPIRDKYLFKINDNVWHENCLQCAI--CRLSLSG-TCYSKNGHLYCKSDYDKL 69
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
F G C+ C I E+V R +N YHL CF C +C H
Sbjct: 70 F--RGRCSGCGFSINPHELVRRVYSNTYHLPCFRCVECGH 107
>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
niloticus]
Length = 359
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECNQHLDET-CTCFVRDGKTYCKRDYARLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 86 GIK--CAKCNMGFCSSDLVMRARDNVYHMECFRCSVCS 121
>gi|345497659|ref|XP_001601152.2| PREDICTED: LIM/homeobox protein Lhx5-like [Nasonia vitripennis]
Length = 475
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC K I D+FL LD WH DC++ CCDCR + +++ + C+ D+ + +G
Sbjct: 5 CAGCDKPIMDKFLFNVLDRAWHADCVR--CCDCR-NPLQEKCFSREAKLFCRNDFFKRYG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C CS+ I ++V +AR+ V+HL CF C C
Sbjct: 62 TK--CGGCSQGINPSDLVRKARDKVFHLNCFTCLVC 95
>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
Length = 303
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA CG I DR+LLK ++ WH CL+C C L + S+ Y K I CK DY FG
Sbjct: 110 CASCGLEILDRYLLKVNNLIWHXRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFG 168
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 169 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSC 202
>gi|334331643|ref|XP_001380687.2| PREDICTED: hypothetical protein LOC100031416 [Monodelphis
domestica]
Length = 190
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 109 IERKSLD-PSEEPVDEVLQIPPSLLT---CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 164
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLR 97
CRLGEVG LY K LC+RDYLR
Sbjct: 165 GCRLGEVGRRLYYKLGRKLCRRDYLR 190
>gi|91077954|ref|XP_967240.1| PREDICTED: similar to CG32105 CG32105-PB [Tribolium castaneum]
Length = 472
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG+ I DR+L++ D WHE CL C C +L + YT+ + CK DY R+FG
Sbjct: 128 CEGCGQKIHDRYLMRVADASWHEHCLTCSICGVQLAH---SCYTRNTKLYCKADYDRIFG 184
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
C+ C + EMVMRA+ +V+HL CF C C
Sbjct: 185 VK--CSRCGDRLLPHEMVMRAQQHVFHLPCFVCVVC 218
>gi|383850874|ref|XP_003700999.1| PREDICTED: LIM/homeobox protein Lhx9-like [Megachile rotundata]
Length = 391
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS-TLYTKANLILCK 92
N+ G C GCG+ I +R+ L+A D WH CL+ CC CR+ T + + I CK
Sbjct: 31 NSDGNLGCGGCGREIAERWYLRAADRAWHCGCLR--CCHCRVPLAAELTCFARDGNIYCK 88
Query: 93 RDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
DY RLF + C+ C I A E+VMRAR+ VYH+ CF C C
Sbjct: 89 EDYYRLF-AVSRCSRCRAGISASELVMRARDLVYHVACFTCASC 131
>gi|260829945|ref|XP_002609922.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
gi|229295284|gb|EEN65932.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
Length = 430
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG HI D+++L+ A D+ WH CLKC C+ L E T + + CKR Y+RLF
Sbjct: 26 CVGCGSHIHDQYILRVAPDLEWHAACLKCSDCNQYLDET-CTCFVREGKTYCKRCYVRLF 84
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA CS + VMRARN +YH++CF C C+
Sbjct: 85 GTK--CAKCSLGFTKNDFVMRARNKIYHIDCFRCVACS 120
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I+DRFLL+ + WHE C+KC C L + T Y + + CK DY +LF
Sbjct: 41 CAGCNTPISDRFLLRVNERSWHEGCVKCAAC---LQPLSGTCYCRNRQLYCKHDYEKLFQ 97
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C K + E +MR NVYH+ CF+C +C R
Sbjct: 98 TK--CSGCLKAVAPSEFIMRVLENVYHVHCFSCCECERR 134
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I+DRFLL+ + WHE C+KC C L + T Y + + CK DY +LF
Sbjct: 5 CAGCDTPISDRFLLRVNERSWHEGCVKCAVC---LQPLAGTCYCRNRQLYCKHDYEKLFQ 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C++C K I E++MR NVYH+ CF C +C R
Sbjct: 62 TK--CSSCLKAIAPSELIMRVLENVYHVHCFYCCECERR 98
>gi|307196006|gb|EFN77731.1| LIM/homeobox protein Lhx9 [Harpegnathos saltator]
Length = 433
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS-TLYTKANLILCKR 93
A+G C GCG+ I +R+ LKA D WH CL+ CC CR+ T + + I CK
Sbjct: 52 AEGTLGCGGCGREIAERWYLKAADRVWHCGCLR--CCHCRVPLAAELTCFARDGNIYCKE 109
Query: 94 DYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
DY RLF + C+ C I A E+VMRAR VYH+ CF C C
Sbjct: 110 DYCRLF-AVSRCSRCRAGISASELVMRARELVYHVACFTCASC 151
>gi|395541258|ref|XP_003772563.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 365
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+GC I D++LLK DMYWH CL C C LG+ +T + K N I CK DYLR FG
Sbjct: 85 CSGCRLEILDKYLLKVNDMYWHMQCLCCSVCQTSLGK-HATCFIKDNTIFCKIDYLRKFG 143
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C C + + + + V +AR VYHL CF C C +
Sbjct: 144 TC--CCGCGRYVCSSDWVQKARGYVYHLACFVCFSCKRQ 180
>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
AltName: Full=Insulin gene enhancer protein isl-2;
Short=Islet-2
gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
Length = 359
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 86 GIK--CAKCNIGFCSSDLVMRARDNVYHMECFRCSVCS 121
>gi|391341454|ref|XP_003745045.1| PREDICTED: LIM/homeobox protein Lhx9-like [Metaseiulus
occidentalis]
Length = 343
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ C GCG I DR+ L +MYWH CL+C C L E ++ + ++ I CK DY R
Sbjct: 22 PRLCTGCGNPICDRYFLCVGEMYWHVGCLQCAHCKTTL-EQHASCFLRSGRIYCKNDYFR 80
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
LF S C+ C+ I + E+VMR R+ VYH CF C CN
Sbjct: 81 LF-SLRPCSRCNIGIFSTELVMRVRDYVYHTHCFTCAWCN 119
>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 399
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CA C K I DRFLLK LD WH C++C C C L E +++ + CK D+ R F
Sbjct: 3 QCASCEKPILDRFLLKVLDRPWHIKCVQCCDCKCSLTE---KCFSREGKLYCKNDFFRKF 59
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA C++ I ++V RA++ V+HL CF C CN
Sbjct: 60 GTK--CAGCAQGILPSDLVRRAKSKVFHLNCFTCVMCN 95
>gi|270002859|gb|EEZ99306.1| LIM homeobox transcription factor 1, beta [Tribolium castaneum]
Length = 388
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG+ I DR+L++ D WHE CL C C +L + YT+ + CK DY R+FG
Sbjct: 44 CEGCGQKIHDRYLMRVADASWHEHCLTCSICGVQLAH---SCYTRNTKLYCKADYDRIFG 100
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
C+ C + EMVMRA+ +V+HL CF C C
Sbjct: 101 VK--CSRCGDRLLPHEMVMRAQQHVFHLPCFVCVVC 134
>gi|225707508|gb|ACO09600.1| LIM domain transcription factor LMO4 [Osmerus mordax]
Length = 126
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+V ++CAGCG I DRFLL +++ YWH CLKC CC LGE+GST Y+K +I
Sbjct: 12 SVTGGGVAGRQCAGCGGRIADRFLLFSMERYWHTRCLKCSCCHAHLGEIGSTCYSKGGMI 71
Query: 90 LCKRDYLR 97
LCK DY+R
Sbjct: 72 LCKNDYIR 79
>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
Length = 349
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I DR++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDRYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|148237976|ref|NP_001079958.1| LIM homeobox 8 [Xenopus laevis]
gi|34784686|gb|AAH57730.1| MGC68912 protein [Xenopus laevis]
Length = 282
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
QG C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY
Sbjct: 88 QGKNVCNNCGMEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIYCKLDY 146
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
R +G+ C+ C + I A + V RA+ NVYHL CFAC C +
Sbjct: 147 FRRYGTR--CSRCGRHIHATDWVRRAKGNVYHLACFACYSCKRQ 188
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C DCR+ ++ + + + CK D+ + F
Sbjct: 67 KCGGCHELILDRFILKVADRTWHAKCLQCS--DCRI-QLTDKCFARNGQLFCKEDFFKRF 123
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C IP ++V RA++NVYHL+CF+C C
Sbjct: 124 GTK--CAGCDLGIPPTQVVRRAQDNVYHLQCFSCVMC 158
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P C GC + I+DRFL++ + WHE+CL+C C L ++ Y + + CK+DY +
Sbjct: 430 PAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQAL---TTSCYFRDRKLYCKQDYQQ 486
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LF + C+ C + I E VMRA VYHL CF C C +
Sbjct: 487 LFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 526
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+C+GC + I F+++AL+ +H C C C+ +L + G K +LCK DY
Sbjct: 491 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKGDY 546
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P C GC + I+DRFL++ + WHE+CL+C C L ++ Y + + CK+DY +
Sbjct: 670 PAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQAL---TTSCYFRDRKLYCKQDYQQ 726
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LF + C+ C + I E VMRA VYHL CF C C +
Sbjct: 727 LFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 766
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+C+GC + I F+++AL+ +H C C C+ +L + G K +LCK DY
Sbjct: 731 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKGDY 786
>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5
gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
Length = 399
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C+C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKIDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V RAR+ V+HL CF C CN
Sbjct: 62 TK--CAGCLQGISPSDLVRRARSKVFHLNCFTCMVCN 96
>gi|321454677|gb|EFX65838.1| hypothetical protein DAPPUDRAFT_13685 [Daphnia pulex]
Length = 266
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGCG I DR+ L A+D WH +CL+C C R + + + + + I C+ DY RLFG
Sbjct: 2 CAGCGFKIVDRYYLVAVDKAWHSECLRCDECR-RPLDTALSCFARQSRIYCREDYNRLFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA C + + E+VMR R +++H CF+C C
Sbjct: 61 GRKQCAKCCETLQPDELVMRGREHLFHTRCFSCHVCQ 97
>gi|339252354|ref|XP_003371400.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
gi|316968379|gb|EFV52660.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
Length = 1751
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 8/99 (8%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCR--LGEVGSTLYTKANLILCKRDYLR 97
C GCG I D+++L+ + D+ WH CLKC DCR L E T + + CK DY+R
Sbjct: 1318 CNGCGHEILDQYILRVSPDLEWHAACLKC--VDCRQFLDET-CTCFVRDGKPYCKLDYVR 1374
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
LFG C+ C +V + VMRA+NN+YH+ CF C C
Sbjct: 1375 LFGVR--CSKCGEVFDRNDYVMRAKNNLYHISCFKCVVC 1411
>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
Length = 481
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DR++LK D WH CL+C +CR + + + N + C D+ + +
Sbjct: 135 KCGGCHEMIVDRYVLKVSDRTWHAGCLRC--VECR-AMLSGKCFARNNQLYCTEDFFKRY 191
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C + IP ++V RA+ +VYHL CFAC C
Sbjct: 192 GTK--CAGCGQGIPPTQVVRRAQAHVYHLRCFACAAC 226
>gi|391342697|ref|XP_003745652.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 363
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC + I DRFLL LD WH C++C C C L E +++ + C+ D+ + F
Sbjct: 5 QCAGCERPILDRFLLHVLDRSWHAKCVQCSDCRCSLSE---KCFSRDGKLFCRSDFYKRF 61
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C++ I ++V RAR+ V+HL+CF C C
Sbjct: 62 GTK--CAGCAQGISPTDLVRRARSKVFHLKCFTCLVC 96
>gi|299115102|dbj|BAJ09782.1| apterous 1 [Daphnia magna]
Length = 468
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG ITDR+ L A++ WH +CL+CG C L + + +++ + I C+ DY RLFG
Sbjct: 7 CGGCGFKITDRYYLVAVERAWHSECLRCGECRRPL-DTALSCFSRQSRIYCRDDYYRLFG 65
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C + + E+VMRAR+ V+HL CF C CN
Sbjct: 66 -VRRCNRCCLPLGSNELVMRARDAVFHLACFTCAACN 101
>gi|328715997|ref|XP_001946565.2| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Acyrthosiphon pisum]
Length = 407
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
GP C GCG I DRFL++ WHE C+ C C L + + Y + N + CK D
Sbjct: 27 GDGPASCEGCGTKIVDRFLMRVGTSSWHEQCVTCSACGVPLAK---SCYYRHNGLYCKND 83
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRA-RNNVYHLECFACQQC 136
Y RLFG C C + + A E+VMRA ++VYH+ CFAC C
Sbjct: 84 YDRLFGVK--CGRCGEPLGARELVMRAGPSHVYHVGCFACVAC 124
>gi|326205389|dbj|BAJ84073.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
Length = 189
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
+K P A C GCG I D+F+L+ + D+ WH CLKC C L E T +
Sbjct: 15 GDHSKKKPGTAM----CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCF 69
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CKRDY+RLFG CA C + ++VMRAR++VYH+ECF C C+
Sbjct: 70 VRDGKTYCKRDYVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCS 121
>gi|339238047|ref|XP_003380578.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
gi|316976506|gb|EFV59791.1| LIM/homeobox protein Lhx9 [Trichinella spiralis]
Length = 337
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GC ITD+F L + WH CL+C C C L E T +++ +LI CK DY + F
Sbjct: 9 QCSGCQATITDQFYLLVAERSWHIHCLRCCVCRCSL-ETELTCFSRGDLIFCKEDYSKQF 67
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C+ C++V+ ++VMRAR+ V+HL CF C CN
Sbjct: 68 --SKRCSRCNRVVLPKDLVMRARDYVFHLHCFTCVVCN 103
>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
AltName: Full=Insulin gene enhancer protein isl-3;
Short=Islet-3
gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
Length = 358
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCVECNQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR++VYH+ECF C C+
Sbjct: 86 GIK--CAKCTLGFSSSDLVMRARDSVYHIECFRCSVCS 121
>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
Length = 389
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK D WH CL+C C +L E + + + CK D+ + +
Sbjct: 40 KCGGCHELILDRFILKVSDRTWHAKCLQCSECRVQLNE---KCFARNGQLFCKDDFFKRY 96
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CAAC IP ++V RA++NVYHL+CF C C+
Sbjct: 97 GTK--CAACDLGIPPTQVVRRAQDNVYHLQCFMCSMCS 132
>gi|345326124|ref|XP_001508297.2| PREDICTED: hypothetical protein LOC100077000 [Ornithorhynchus
anatinus]
Length = 553
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P C GC + I+DRFLL+ + WHE+CL+C C L ++ Y + + CK+DY +
Sbjct: 206 PAVCEGCQRPISDRFLLRVNEASWHEECLQCAACQQAL---TTSCYFRDRKLYCKQDYQQ 262
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LF + C+ C + I E VMRA VYHL CF C C +
Sbjct: 263 LFAAK--CSGCLEKIAPTEFVMRALECVYHLGCFCCCVCERQ 302
Score = 36.2 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+C+GC + I F+++AL+ +H C C C+ +L + G K +LCK DY
Sbjct: 267 KCSGCLEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKSDY 322
>gi|47217859|emb|CAG02352.1| unnamed protein product [Tetraodon nigroviridis]
Length = 235
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Query: 36 QGPQECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
QG C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRD
Sbjct: 22 QGFAMCVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRD 80
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
Y+RLFG CA C+ + ++VMRAR++VYH+ECF C C+ +
Sbjct: 81 YVRLFGIK--CAKCNLGFSSSDLVMRARDHVYHIECFRCSVCSRQ 123
>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
Length = 303
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|348505058|ref|XP_003440078.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 361
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL+ D WHEDC++C C + ++ + + + CKRDY LF
Sbjct: 17 CAGCHRLIRDRFLLRVTDGLWHEDCVRCAACG---DALTNSCFLRDRKLYCKRDYADLFA 73
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
CA C++ I E+VMRA V+HL CF C C+
Sbjct: 74 V--RCAGCTEAISPAELVMRAGAAVFHLRCFTCSVCS 108
>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
Length = 400
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARGKVFHLNCFTCMVCN 96
>gi|307166312|gb|EFN60494.1| LIM/homeobox protein Lhx9 [Camponotus floridanus]
Length = 487
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 42 AGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS-TLYTKANLILCKRDYLRLFG 100
GCG+ I +R+ L+A D WH CL+C C CR+ T + + I CK DY RLF
Sbjct: 138 GGCGREIAERWYLRAADRAWHCGCLRC--CHCRVPLAAELTCFARDGNIYCKEDYYRLF- 194
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C I A E+VMRAR+ VYH+ CF C C
Sbjct: 195 AVSRCSRCRAGISASELVMRARDLVYHVACFTCASC 230
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P C GC + I+DRFL++ + WHE+CL+C C L ++ Y + + CK+DY +
Sbjct: 289 PAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQAL---TTSCYFRDRKLYCKQDYQQ 345
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LF + C+ C + I E VMRA VYHL CF C C +
Sbjct: 346 LFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 385
Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+C+GC + I F+++AL+ +H C C C+ +L + G K +LCK DY
Sbjct: 350 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKGDY 405
>gi|390356846|ref|XP_785118.3| PREDICTED: LIM/homeobox protein Awh-like [Strongylocentrotus
purpuratus]
Length = 335
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 5 IGLEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLK-ALDMYWHE 63
+GLE + ++ + +K + + CAGCGK I DR+LL+ + WH
Sbjct: 1 MGLETHGSAAAAGRIQDKMSQLDSKPIDTTESKSESCAGCGKAIIDRYLLRIGRGLSWHS 60
Query: 64 DCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARN 123
CL+C CD L S + N + C++ Y R FG+ CA C + I A + V RAR
Sbjct: 61 SCLRCLECDESLSSHQSCYFKDQN-VFCRKCYSREFGTK--CARCLRNIDASDWVRRARE 117
Query: 124 NVYHLECFACQQCNHR 139
N+YHL CFAC C +
Sbjct: 118 NIYHLACFACDNCKRQ 133
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P C GC + I+DRFL++ + WHE+CL+C C L ++ Y + + CK+DY +
Sbjct: 274 PAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQAL---TTSCYFRDRKLYCKQDYQQ 330
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LF + C+ C + I E VMRA VYHL CF C C +
Sbjct: 331 LFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 370
Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+C+GC + I F+++AL+ +H C C C+ +L + G K +LCK DY
Sbjct: 335 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKGDY 390
>gi|158292633|ref|XP_558527.3| AGAP005137-PA [Anopheles gambiae str. PEST]
gi|157017083|gb|EAL40471.3| AGAP005137-PA [Anopheles gambiae str. PEST]
Length = 432
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 27/121 (22%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG+ I DR+ +K + D +WHE CL C C CR+ ++ T YTK + CK DY R+F
Sbjct: 19 CEGCGQKIKDRYFMKLSPDQFWHEQCLLC--CICRI-QLSQTCYTKNTKVYCKDDYYRIF 75
Query: 100 GSTGY-----------------------CAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G + C C + I EMVMRA++ VYHL CF C C
Sbjct: 76 GVSSVHQQNQQHHQQHGQQQQQQQHQRDCYGCGERIAPIEMVMRAKHLVYHLHCFLCYTC 135
Query: 137 N 137
N
Sbjct: 136 N 136
>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 278
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
C GCG IT+RFLL WH CL+C C C++G E ++ + + + I C+ DY R F
Sbjct: 45 CYGCGDLITERFLLHVNGQAWHVGCLRC--CICQIGLERQTSCFIREDNIYCRNDYSREF 102
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C + I + + V RAR NVYHL CFAC C
Sbjct: 103 GTK--CAKCYRTIQSTDWVRRARENVYHLACFACDSC 137
>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 346
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Query: 6 GLEHLKINRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDC 65
G++ K+++ + ++ + + A + +CA CG I DR+LLK ++ WH C
Sbjct: 33 GIQEGKMSKSEIKKESGESSPSEAACLCSPAAKNQCANCGIEIHDRYLLKVNNLNWHLGC 92
Query: 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNV 125
L+C C L + S+ Y K I CK DY FG+ CA C + + A + V RAR +V
Sbjct: 93 LECSVCRASLHQ-HSSCYVKNKEIYCKLDYFSRFGTK--CAQCGRQVYASDWVRRARGSV 149
Query: 126 YHLECFACQQC 136
YHL CFAC C
Sbjct: 150 YHLACFACFSC 160
>gi|321454678|gb|EFX65839.1| hypothetical protein DAPPUDRAFT_65174 [Daphnia pulex]
Length = 291
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG ITDR+ L A++ WH +CL+CG C R + + +++ + I C+ DY RLFG
Sbjct: 18 CGGCGFKITDRYYLVAVERAWHSECLRCGECR-RPLDTALSCFSRQSRIYCRDDYYRLFG 76
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
C C + + E+VMRAR+ V+HL CF C CN
Sbjct: 77 -VRRCNRCCLPLGSNELVMRARDAVFHLACFTCAACN 112
>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
Length = 419
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG HI D+++L+ A D+ WH CLKC C+ L E T + + CKR Y+RLF
Sbjct: 15 CVGCGSHIHDQYILRVAPDLEWHAACLKCSDCNQYLDET-CTCFVREGKTYCKRCYVRLF 73
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA CS + VMRA+N +YH++CF C C+ +
Sbjct: 74 GTK--CAKCSLGFTKNDFVMRAKNKIYHIDCFRCVACSRQ 111
>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
Length = 406
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DR LL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCKRPILDRLLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C + I D++LLK D+ WH CL C C L ++ Y K + CK DY R +G
Sbjct: 12 CASCSEEIVDKYLLKVNDLCWHVRCLSCSVCHTSLSS-HTSCYIKEKEVFCKLDYFRRYG 70
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ +CA C + I + + V RA+ NVYHL CFAC C
Sbjct: 71 T--WCACCGRNIHSTDWVRRAKGNVYHLACFACFSC 104
>gi|410903918|ref|XP_003965440.1| PREDICTED: LIM/homeobox protein Lhx5-like [Takifugu rubripes]
Length = 396
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C+C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKMDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCLQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|410923575|ref|XP_003975257.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 310
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CA CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY F
Sbjct: 31 QCASCGMEIQDRYLLKVNNLNWHLGCLECSVCRASLRQHNSC-YVKNKEIFCKLDYFSRF 89
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA C + + A + V RAR +VYHL CFAC C +
Sbjct: 90 GTK--CAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQ 127
>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
Length = 499
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 97 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 153
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 154 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 189
>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 535
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CA CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY F
Sbjct: 18 QCASCGMDIQDRYLLKVNNLNWHLGCLECSVCRASLRQHNSC-YVKNKEIFCKLDYFSRF 76
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ CA C + + A + V RAR +VYHL CFAC C +
Sbjct: 77 GTK--CAQCGRQVYASDWVRRARGSVYHLACFACFSCKRQ 114
>gi|242007294|ref|XP_002424476.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
gi|212507894|gb|EEB11738.1| Homeobox protein ceh-14, putative [Pediculus humanus corporis]
Length = 389
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GCG+ I DR+L++ D WHE CL C C L + YT++ + CK+DY R+FG
Sbjct: 29 CEGCGQKIHDRYLMRVGDTSWHEHCLSCNVCGVLLSH---SCYTRSGKLYCKQDYDRIFG 85
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
C+ C I E+VMRA++ V+HL+CF C C
Sbjct: 86 VK--CSRCGDRILPHELVMRAQHLVFHLQCFCCIAC 119
>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
Length = 332
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK DM WH CL C C LG S Y K I CK DY R +G
Sbjct: 51 CTSCGTEIVDKYLLKVNDMCWHVRCLSCSVCQTSLGRHIS-CYIKEKEIFCKLDYFRKYG 109
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C + I + + V RA+ N YHL CFAC C
Sbjct: 110 TR--CAHCGRNIHSNDWVRRAKGNTYHLACFACFSC 143
>gi|391759011|dbj|BAM22649.1| LIM homeobox 3/4, partial [Eptatretus burgeri]
Length = 205
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
A GP C GC I DRFLLKAL+ WH CL+C C L E +++ + CK D
Sbjct: 27 ATGPV-CGGCSLPIGDRFLLKALERSWHASCLRCRDCQSPLSE---RCFSRDGALYCKED 82
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ R FG+ CA C + IP + V +A+ V+HL CFAC C
Sbjct: 83 FFRRFGTK--CAGCRQGIPPSQAVRKAQERVFHLHCFACSLCG 123
>gi|410930167|ref|XP_003978470.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 408
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C C + I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CGGCFQGISPNDLVRRARSKVFHLNCFTCMMCN 95
>gi|47224946|emb|CAG06516.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C C + I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CGGCFQGISPNDLVRRARSKVFHLNCFTCMMCN 95
>gi|348533440|ref|XP_003454213.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 392
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CA CG I DR+LLK ++ WH CL+C C L + S+ Y K I CK DY F
Sbjct: 113 QCASCGMEIHDRYLLKVNNLNWHLGCLECSVCRASLRQ-HSSCYVKNKEIYCKLDYFSRF 171
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA C + + A + V RAR +VYHL CFAC C
Sbjct: 172 GTK--CAQCGRQVYASDWVRRARGSVYHLACFACFSCK 207
>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
Length = 555
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 121 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 177
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 178 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 213
>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
Length = 367
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 155 TR--CSRCGRHIHSIDWVRRAKGNVYHLACFACFSCKRQ 191
>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
Length = 520
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 121 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 177
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 178 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 213
>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
Length = 364
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S+ Y K I CK DY FG
Sbjct: 71 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQ-QSSCYIKNKEIFCKVDYFSRFG 129
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 130 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 166
>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
Length = 523
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 126 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 182
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 183 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 218
>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
Length = 462
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG+ I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 191 CNSCGREIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 249
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 250 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 283
>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
Length = 396
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C+C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCDCNCNLTE---KCFSRDGKLYCKMDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCLQGISPNDLVRKARSKVFHLNCFTCMVCN 96
>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
Length = 442
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
porcellus]
Length = 371
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ + D+ WH CLKC C L E T + + CKRDY RLF
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYARLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C + ++VMRAR++V+H+ECF C C+ +
Sbjct: 86 GIK--CAKCQVGFSSSDLVMRARDSVFHVECFRCAVCSRQ 123
>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
Length = 405
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 6 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 62
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 63 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 98
>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
Length = 440
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
Length = 440
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
Length = 438
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
Length = 448
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
Length = 442
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
Length = 444
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY
Sbjct: 92 GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQHNSC-YIKNKEIFCKMDYF 150
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
FG+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 151 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACYSC 188
>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
Length = 336
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 48 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 106
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 107 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 143
>gi|229619776|dbj|BAH58087.1| LIM homeobox protein 1 [Nematostella vectensis]
Length = 358
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q+CAGC I D+FLLK LD WH C++C C C L E +++ + CK D+ R
Sbjct: 3 QQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTE---RCFSREGKLFCKTDFYRR 59
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+G+ C+ C + I +MV RA++ V+H++CF C C
Sbjct: 60 YGTK--CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYC 95
>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
[Sarcophilus harrisii]
Length = 354
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
Length = 235
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY
Sbjct: 26 GKNVCSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQHSC-YIKNKEIFCKMDYF 84
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 85 SRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 125
>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
Length = 392
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP+ G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 90 SVPST--GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 146
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|125823566|ref|XP_001339831.1| PREDICTED: LIM/homeobox protein Lhx8-like [Danio rerio]
Length = 356
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
QG C C +HI DR LLK DM WH CL C C L E +T Y + I CK Y
Sbjct: 81 QGKAVCTRCREHILDRHLLKVNDMCWHARCLSCSVCQTTLSE-QTTCYVREREIFCKLHY 139
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
R F + +C+ C + + + + V RA+ NVYHL CF+C C
Sbjct: 140 FRRFQT--WCSCCRETLHSSDWVHRAKGNVYHLACFSCFSC 178
>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
Length = 377
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP+ G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 90 SVPST--GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 146
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
Length = 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
Length = 360
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 72 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 130
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 131 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 167
>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
Length = 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
Length = 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
Length = 404
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|281342386|gb|EFB17970.1| hypothetical protein PANDA_008333 [Ailuropoda melanoleuca]
Length = 340
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 8 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 66
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 67 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 104
>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
domestica]
gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
[Sarcophilus harrisii]
Length = 349
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
[Ornithorhynchus anatinus]
Length = 382
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 50 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 108
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 109 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 146
>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
Length = 366
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP+ G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 79 SVPST--GKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 135
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
CK DY FG+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 136 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSC 180
>gi|341889206|gb|EGT45141.1| CBN-LIN-11 protein [Caenorhabditis brenneri]
Length = 372
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL 96
G ECA C + I DR++ L WH+ CL+ CCDCR + T ++K LILCK DY
Sbjct: 71 GGNECAACAQPILDRYVFTVLGKCWHQSCLR--CCDCR-APMSMTCFSKDGLILCKSDYS 127
Query: 97 RLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
R +G CA C + ++V RAR+ V+H+ CF C C
Sbjct: 128 RRYGH--RCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVC 165
>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
Length = 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
Length = 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
Length = 377
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
Length = 363
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|348535371|ref|XP_003455174.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oreochromis niloticus]
Length = 396
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C+C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKIDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCLQGISPNDLVRKARSKVFHLNCFTCMVCN 96
>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
Length = 348
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
Length = 346
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 14 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 72
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 73 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 110
>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
Length = 360
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 72 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 130
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 131 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 167
>gi|2384698|gb|AAB70190.1| homeobox protein Lim-1 [Xenopus laevis]
Length = 112
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
Length = 348
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
Length = 349
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
Length = 377
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
Length = 348
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
Length = 377
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|301768533|ref|XP_002919684.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Ailuropoda
melanoleuca]
Length = 349
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
Length = 377
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|426246540|ref|XP_004017051.1| PREDICTED: insulin gene enhancer protein ISL-1 [Ovis aries]
Length = 349
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
Length = 348
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 381
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
Length = 381
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
Length = 349
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
leucogenys]
gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
troglodytes]
gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
africana]
gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
lupus familiaris]
gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
porcellus]
gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
griseus]
gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
garnettii]
gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
boliviensis]
gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|2137056|pir||I67418 transcription factor isl-1 - hamster
gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
sapiens]
gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
musculus]
gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
Length = 349
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
Length = 390
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 97 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 155
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 156 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 192
>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
Length = 383
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 51 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 110 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 147
>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
gorilla]
Length = 384
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 92 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 150
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 151 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 187
>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
Length = 392
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
Length = 366
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|47207761|emb|CAF90915.1| unnamed protein product [Tetraodon nigroviridis]
Length = 164
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 46/62 (74%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ CAGCG I +RFLL +++ YWH CL+C CC RLG++G + Y++ LILC+ DY+RL
Sbjct: 1 RSCAGCGGDICERFLLFSMERYWHTRCLRCSCCQARLGDLGPSCYSRGGLILCRSDYVRL 60
Query: 99 FG 100
FG
Sbjct: 61 FG 62
>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
musculus]
Length = 326
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
Length = 366
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
anubis]
Length = 390
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
Length = 392
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
Length = 359
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 27 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 86 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 123
>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
gorilla]
Length = 369
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 92 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 150
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 151 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSC 184
>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
Length = 392
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
Length = 392
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
Length = 366
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
Length = 366
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
scrofa]
Length = 332
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
Length = 545
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C +L + + + + CK D+ + +
Sbjct: 125 KCGGCHELILDRFILKVLERTWHAKCLQCSECHAQLND---KCFARNGQLFCKEDFFKRY 181
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 182 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 217
>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
Length = 366
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
leucogenys]
Length = 376
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
Length = 375
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 94 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 152
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 153 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCK 187
>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
Length = 377
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 84 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 142
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 143 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 179
>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
Length = 346
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
Length = 363
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIFASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|268567057|ref|XP_002639879.1| C. briggsae CBR-LIN-11 protein [Caenorhabditis briggsae]
Length = 411
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Query: 28 TKAVPNNAQGPQ-------ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGS 80
T +P++ PQ ECA C + I DR++ L WH+ CL+ CCDCR +
Sbjct: 55 TWMMPSSTTHPQISEISGNECAACAQPILDRYVFTVLGKCWHQSCLR--CCDCR-APMSM 111
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
T ++K LILCK DY R +G CA C + ++V RAR+ V+H+ CF C C
Sbjct: 112 TCFSKDGLILCKTDYSRRYGH--RCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVC 165
>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
Length = 379
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 98 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 156
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 157 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 190
>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
anatinus]
Length = 347
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 125 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 158
>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
Length = 336
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
anatinus]
Length = 347
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 125 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 158
>gi|338727662|ref|XP_001915147.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Equus caballus]
Length = 403
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECK-ANLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
leucogenys]
Length = 365
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|170032119|ref|XP_001843930.1| lim homeobox protein [Culex quinquefasciatus]
gi|167871879|gb|EDS35262.1| lim homeobox protein [Culex quinquefasciatus]
Length = 400
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 60/114 (52%), Gaps = 20/114 (17%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG+ I DR+ +K + D YWHE CL C C+ +L + +TK + CK DY R++
Sbjct: 17 CEGCGQKIKDRYFMKISPDQYWHEQCLLCCICNIQLNH---SCFTKNTKVYCKDDYYRIY 73
Query: 100 GSTGY----------------CAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G + C C + I EMVMRA+N+V+HL CF C CN
Sbjct: 74 GLSQLQQKQQNQQHQQKVSRECYGCGERIAPNEMVMRAKNHVFHLNCFLCYTCN 127
>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
Length = 363
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
leucogenys]
Length = 391
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
Length = 349
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF+C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFSCVACSRQ 113
>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
Length = 485
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 215 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 273
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 274 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 310
>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
Length = 391
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 98 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 156
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 157 TK--CARCGRQIFASDWVRRARGNAYHLACFACFSCKRQ 193
>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
Length = 294
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 48 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 106
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 107 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSC 140
>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
Lhx7; Short=LIM homeobox protein 7
gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
gi|1587483|prf||2206477A LIM homeo domain transcription factor
Length = 367
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 191
>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
Length = 347
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 125 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 158
>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
Length = 313
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 14 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 72
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 73 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 110
>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
Length = 367
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 191
>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
Length = 443
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 172 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 230
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 231 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 267
>gi|403281850|ref|XP_003932386.1| PREDICTED: LIM/homeobox protein Lhx5 [Saimiri boliviensis
boliviensis]
Length = 385
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|351694748|gb|EHA97666.1| LIM/homeobox protein Lhx5 [Heterocephalus glaber]
Length = 402
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 40 ECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
+CAGC + I+ L+ KA +H +C C C+ +L G LY N +CK DYL
Sbjct: 63 KCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLS-TGEELYVIDENKFVCKEDYL 120
>gi|159162529|pdb|1J2O|A Chain A, Structure Of Flin2, A Complex Containing The N-Terminal
Lim Domain Of Lmo2 And Ldb1-Lid
Length = 114
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 42/58 (72%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
C GC ++I DR+ LKA+D YWHEDCL C C CRLGEVG LY K LC+RDYLRL
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 63
>gi|281343471|gb|EFB19055.1| hypothetical protein PANDA_014809 [Ailuropoda melanoleuca]
Length = 354
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
Length = 347
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 66 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 124
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 125 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 158
>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
Length = 449
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C +L + + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECHAQLND---KCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
Length = 451
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C +L + + + + CK D+ + +
Sbjct: 41 KCGGCHELILDRFILKVLERTWHAKCLQCSECHSQLND---KCFARNGQLFCKEDFFKRY 97
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA++NVYHL+CF C C+
Sbjct: 98 GTK--CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCS 133
>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
Length = 426
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 155 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 213
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 214 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 250
>gi|229365914|gb|ACQ57937.1| LIM domain transcription factor LMO4 [Anoplopoma fimbria]
Length = 79
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G+ Q V + + CAGCG I DRFLL +D Y H CLKC CC +LGE+G++ Y
Sbjct: 6 GSSQPPPVGTGSLSWKRCAGCGGKIADRFLLYTMDSYRHSRCLKCSCCQAQLGEIGTSCY 65
Query: 84 TKANLILCKRDYLR 97
TK+ +ILC+ DY+R
Sbjct: 66 TKSGMILCRNDYIR 79
>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
Length = 442
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 161 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 219
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 220 T--RCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 256
>gi|11641283|ref|NP_071758.1| LIM/homeobox protein Lhx5 [Homo sapiens]
gi|332840493|ref|XP_001153819.2| PREDICTED: LIM/homeobox protein Lhx5 [Pan troglodytes]
gi|397525022|ref|XP_003832477.1| PREDICTED: LIM/homeobox protein Lhx5 [Pan paniscus]
gi|426374256|ref|XP_004053995.1| PREDICTED: LIM/homeobox protein Lhx5 [Gorilla gorilla gorilla]
gi|18202938|sp|Q9H2C1.1|LHX5_HUMAN RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|11527289|gb|AAG36963.1|AF291181_1 LHX5 protein [Homo sapiens]
gi|80475867|gb|AAI09231.1| LIM homeobox 5 [Homo sapiens]
gi|119618466|gb|EAW98060.1| LIM homeobox 5 [Homo sapiens]
gi|261861188|dbj|BAI47116.1| LIM homeobox 5 [synthetic construct]
Length = 402
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|348551170|ref|XP_003461403.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like
[Cavia porcellus]
Length = 404
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|344295258|ref|XP_003419329.1| PREDICTED: LIM/homeobox protein Lhx5-like [Loxodonta africana]
Length = 402
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
Length = 198
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP + G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 61 SVP--SAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 117
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 118 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|432899669|ref|XP_004076609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oryzias latipes]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C C K I DRFLLK LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CTSCEKPILDRFLLKVLDRPWHVKCVQCCECKCSLTE---KCFSRDGRLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C CS+ I ++V RA++ V+HL CF C CN
Sbjct: 61 TK--CGGCSQGILPSDLVRRAKSKVFHLNCFTCVMCN 95
>gi|156120769|ref|NP_001095531.1| LIM/homeobox protein Lhx5 [Bos taurus]
gi|151557071|gb|AAI50044.1| LHX5 protein [Bos taurus]
gi|296478515|tpg|DAA20630.1| TPA: LIM homeobox protein 5 [Bos taurus]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|348531406|ref|XP_003453200.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 386
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 30 AVPNNA--QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKAN 87
AVP A QG C CG I DR+LLK ++ WH CL C C LG S Y +
Sbjct: 93 AVPTEACVQGKPVCTSCGLEIVDRYLLKVNNLCWHVRCLSCSVCKTSLGRHVSC-YIRDK 151
Query: 88 LILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CK DY R +G+ CA C + I + + V RAR + +HL CF+C C +
Sbjct: 152 EVFCKLDYFRRYGTR--CARCGRNIHSSDWVRRARGSTFHLACFSCTSCKRQ 201
>gi|124111083|gb|ABM91915.1| LHX6 [Pan troglodytes]
Length = 198
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP + G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 61 SVP--SAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 117
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 118 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|122934839|gb|ABM68157.1| LHX6 [Lagothrix lagotricha]
Length = 198
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP + G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 61 SVP--SAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 117
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 118 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|109098848|ref|XP_001111705.1| PREDICTED: LIM/homeobox protein Lhx5-like [Macaca mulatta]
gi|296213013|ref|XP_002753087.1| PREDICTED: LIM/homeobox protein Lhx5 [Callithrix jacchus]
gi|297693055|ref|XP_002823842.1| PREDICTED: LIM/homeobox protein Lhx5 [Pongo abelii]
gi|402887767|ref|XP_003907254.1| PREDICTED: LIM/homeobox protein Lhx5 [Papio anubis]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|395833990|ref|XP_003790000.1| PREDICTED: LIM/homeobox protein Lhx5 [Otolemur garnettii]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|345790894|ref|XP_543409.3| PREDICTED: LIM/homeobox protein Lhx5 [Canis lupus familiaris]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
Length = 363
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
Length = 363
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
Length = 365
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 95 CSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 153
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 154 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 190
>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
Length = 380
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 102 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 160
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 161 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 197
>gi|431914229|gb|ELK15487.1| LIM/homeobox protein Lhx5 [Pteropus alecto]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
Length = 363
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|410915338|ref|XP_003971144.1| PREDICTED: LIM/homeobox protein Lhx1-like [Takifugu rubripes]
Length = 397
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C C K I DRFLLK LD WH C++C C C L E +++ + CK D+ R F
Sbjct: 3 QCTSCEKPILDRFLLKVLDRPWHVKCVQCCDCKCTLSE---KCFSREGKLYCKNDFFRRF 59
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C C++ I ++V RA++ V+HL CF C CN
Sbjct: 60 GTK--CDGCAQGILPSDLVRRAKSKVFHLNCFTCMMCN 95
>gi|440898273|gb|ELR49802.1| LIM/homeobox protein Lhx5, partial [Bos grunniens mutus]
Length = 376
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|426384765|ref|XP_004058922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Gorilla gorilla
gorilla]
Length = 393
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|6678690|ref|NP_032525.1| LIM/homeobox protein Lhx5 [Mus musculus]
gi|20514764|ref|NP_620605.1| LIM/homeobox protein Lhx5 [Rattus norvegicus]
gi|47606426|sp|P61376.1|LHX5_RAT RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-2
gi|47606427|sp|P61375.1|LHX5_MOUSE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5
gi|531220|gb|AAA62162.1| amino acid feature: homeodomain, bp 895 .. 1074; amino acid
feature: LIM1, bp 373 .. 516; amino acid feature: LIM2,
bp 550 .. 705 [Rattus norvegicus]
gi|1388183|gb|AAC52842.1| LIM/homeodomain [Mus musculus]
gi|26329557|dbj|BAC28517.1| unnamed protein product [Mus musculus]
gi|26339568|dbj|BAC33455.1| unnamed protein product [Mus musculus]
gi|34784227|gb|AAH57585.1| LIM homeobox protein 5 [Mus musculus]
gi|74148661|dbj|BAE24281.1| unnamed protein product [Mus musculus]
gi|148687827|gb|EDL19774.1| LIM homeobox protein 5 [Mus musculus]
gi|149063463|gb|EDM13786.1| LIM homeobox protein 5 [Rattus norvegicus]
Length = 402
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
Length = 348
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
Length = 377
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
Length = 366
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 88 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 146
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 147 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 183
>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
Length = 395
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 102 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 160
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 161 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 197
>gi|426247330|ref|XP_004017439.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5 [Ovis
aries]
Length = 386
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|295656539|gb|ADG26732.1| Lhx1/5 [Platynereis dumerilii]
Length = 291
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C L + +++ + C+ D+ R FG
Sbjct: 4 CAGCDRPILDRFLLNVLDRAWHAQCVQCTECKAHLTD---KCFSREGKLYCRDDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C CS+ I ++V RARN V+HL+CF C C
Sbjct: 61 TK--CGGCSQGISPNDLVRRARNKVFHLKCFTCMVC 94
>gi|355786560|gb|EHH66743.1| hypothetical protein EGM_03791, partial [Macaca fascicularis]
Length = 306
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
Length = 348
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
Length = 421
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 128 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQHS-CYIKNKEIFCKMDYFSRFG 186
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C + I A + V RAR N YHL CFAC C
Sbjct: 187 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSC 220
>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
Length = 392
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|354497499|ref|XP_003510857.1| PREDICTED: LIM/homeobox protein Lhx5-like [Cricetulus griseus]
gi|344257745|gb|EGW13849.1| LIM/homeobox protein Lhx5 [Cricetulus griseus]
Length = 402
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
familiaris]
Length = 487
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P C GC + I+DRFL++ + WHE+CL+C C L ++ Y + + CK+DY +
Sbjct: 138 PAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQAL---TTSCYFRDRKLYCKQDYQQ 194
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LF + C+ C + I E VMRA VYHL CF C C +
Sbjct: 195 LFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQ 234
Score = 35.0 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 ECAGCGKHIT-DRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
+C+GC + I F+++AL+ +H C C C+ +L + G K +LCK DY
Sbjct: 199 KCSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRK-GDEFVLKEGQLLCKGDY 254
>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
Length = 377
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|338720274|ref|XP_001916843.2| PREDICTED: LIM/homeobox protein Lhx6-like [Equus caballus]
Length = 239
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP + G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 61 SVP--SAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSC-YIKNKEI 117
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 118 FCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|311270693|ref|XP_003132949.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx5-like [Sus
scrofa]
Length = 402
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECXTNLSE---KCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 388
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 95 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 153
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 154 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 190
>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
Length = 392
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|355564712|gb|EHH21212.1| hypothetical protein EGK_04224, partial [Macaca mulatta]
Length = 293
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKTN-LSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR+ V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCN 96
>gi|308485364|ref|XP_003104881.1| CRE-LIN-11 protein [Caenorhabditis remanei]
gi|308257579|gb|EFP01532.1| CRE-LIN-11 protein [Caenorhabditis remanei]
Length = 415
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
ECA C + I DR++ L WH+ CL+ CCDCR + T ++K LILCK DY R +
Sbjct: 77 ECAACAQPILDRYVFTVLGKCWHQSCLR--CCDCR-APMSMTCFSKDGLILCKTDYSRRY 133
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA C + ++V RAR+ V+H+ CF C C
Sbjct: 134 GHR--CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVC 168
>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 373
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 95 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 153
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 154 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 190
>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
bp 517 .. 669; amino acid feature: homeodomain, bp 820
.. 999 [Gallus gallus]
Length = 349
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQ 113
>gi|258504095|gb|ACV72753.1| LIN-11 [Caenorhabditis remanei]
gi|258504097|gb|ACV72754.1| LIN-11 [Caenorhabditis remanei]
gi|258504103|gb|ACV72757.1| LIN-11 [Caenorhabditis remanei]
gi|258504107|gb|ACV72759.1| LIN-11 [Caenorhabditis remanei]
gi|258504109|gb|ACV72760.1| LIN-11 [Caenorhabditis remanei]
gi|258504111|gb|ACV72761.1| LIN-11 [Caenorhabditis remanei]
gi|258504117|gb|ACV72764.1| LIN-11 [Caenorhabditis remanei]
gi|258504119|gb|ACV72765.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
ECA C + I DR++ L WH+ CL+ CCDCR + T ++K LILCK DY R +
Sbjct: 62 ECAACAQPILDRYVFTVLGKCWHQSCLR--CCDCR-APMSMTCFSKDGLILCKTDYSRRY 118
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA C + ++V RAR+ V+H+ CF C C
Sbjct: 119 GH--RCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVC 153
>gi|432856535|ref|XP_004068463.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 348
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + ITDRFLL+ D WHE C++C C L L K + CKRDY LF
Sbjct: 16 CVGCQRRITDRFLLRVADGLWHERCVRCAACGDALRNSCFLLERK---LYCKRDYSSLFA 72
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
+C C++ I E+VMRA V+HL CF C C H
Sbjct: 73 V--HCGGCAEAISPSELVMRAGAAVFHLSCFTCSVCFH 108
>gi|340377757|ref|XP_003387395.1| PREDICTED: LIM/homeobox protein Lhx5-like [Amphimedon
queenslandica]
Length = 272
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 5/102 (4%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P CAGC + I +RFL+K LD WH C+KC C C L E +++ N + C+ D+ R
Sbjct: 3 PFICAGCSEPIMERFLMKVLDKSWHVQCVKCSDCQCLLSE---KCFSRDNKLYCRSDFFR 59
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+G+ CA+C + + ++V R N +YH++CF C C +
Sbjct: 60 QYGTQ--CASCKEGLCPEDLVRRGVNKIYHVQCFKCSVCQRQ 99
>gi|258504089|gb|ACV72750.1| LIN-11 [Caenorhabditis remanei]
gi|258504091|gb|ACV72751.1| LIN-11 [Caenorhabditis remanei]
gi|258504093|gb|ACV72752.1| LIN-11 [Caenorhabditis remanei]
gi|258504099|gb|ACV72755.1| LIN-11 [Caenorhabditis remanei]
gi|258504113|gb|ACV72762.1| LIN-11 [Caenorhabditis remanei]
gi|258504115|gb|ACV72763.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
ECA C + I DR++ L WH+ CL+ CCDCR + T ++K LILCK DY R +
Sbjct: 62 ECAACAQPILDRYVFTVLGKCWHQSCLR--CCDCR-APMSMTCFSKDGLILCKTDYSRRY 118
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA C + ++V RAR+ V+H+ CF C C
Sbjct: 119 GHR--CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVC 153
>gi|224090443|ref|XP_002197098.1| PREDICTED: insulin gene enhancer protein ISL-1 [Taeniopygia
guttata]
Length = 349
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARAKVYHIECFRCVACSRQ 113
>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
Length = 388
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 95 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFG 153
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 154 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 190
>gi|258504101|gb|ACV72756.1| LIN-11 [Caenorhabditis remanei]
gi|258504105|gb|ACV72758.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
ECA C + I DR++ L WH+ CL+ CCDCR + T ++K LILCK DY R +
Sbjct: 62 ECAACAQPILDRYVFTVLGKCWHQSCLR--CCDCR-APMSMTCFSKDGLILCKTDYSRRY 118
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA C + ++V RAR+ V+H+ CF C C
Sbjct: 119 GH--RCAGCDGKLEKEDLVRRARDKVFHIRCFQCSVC 153
>gi|405976917|gb|EKC41395.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 280
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q C GC + I DR+ L WH DCL+C C C E + + K I C+RDY+
Sbjct: 50 QACEGCQEVIADRYFLHVNGACWHTDCLRCCVC-CSSLEQEESCFVKDENIYCRRDYISE 108
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FG+ C+ C + I A + V RAR NVYHL CFAC C +
Sbjct: 109 FGTK--CSKCYRKIQATDWVRRARENVYHLACFACDSCQRQ 147
>gi|291407015|ref|XP_002719805.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 402
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V +AR V+HL CF C CN
Sbjct: 62 TK--CAGCAQGISPSDLVRKARGKVFHLNCFTCMVCN 96
>gi|324511084|gb|ADY44626.1| LIM/homeobox protein Awh [Ascaris suum]
Length = 384
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 11/121 (9%)
Query: 27 QTKAVPNNAQG--------PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
Q ++ PN+A + C+ C ++I DR LL +WH +CL+C C L +
Sbjct: 97 QLQSTPNDAFAFAKPTKFEAEVCSSCTEYILDRILLNVNSRFWHTECLRCSQCSVHLDQY 156
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
S + K ++I CK Y R FG+ C++C ++I + V RAR+ VYHL CFAC QC
Sbjct: 157 PS-CFIKEDIIYCKPCYNRQFGTK--CSSCRRLIQPTDWVRRARSFVYHLACFACDQCKR 213
Query: 139 R 139
+
Sbjct: 214 Q 214
>gi|241688853|ref|XP_002411721.1| LIM domain containing protein [Ixodes scapularis]
gi|215504541|gb|EEC14035.1| LIM domain containing protein [Ixodes scapularis]
Length = 173
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ A D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGAPIRDQYILRVAPDLEWHAACLKCADCQQFLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ C+ C + + VMRAR ++YHL+CF CQ C
Sbjct: 86 GAK--CSKCQQGFSRTDFVMRARQHIYHLDCFRCQAC 120
>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 360
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++++ + D+ WH CLKC C L E T + + CKRDY R+F
Sbjct: 27 CVGCGSQIHDQYIMRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYARIF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA C+ + ++VMRAR+NVYH+ECF C C
Sbjct: 86 GIK--CAKCNVGFCSSDLVMRARDNVYHMECFRCSVC 120
>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
Length = 346
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
A G C CG I D++LLK D+ WH CL C C LG ++ Y K I CK D
Sbjct: 59 ASGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLD 117
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
Y R +G+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 118 YFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
Length = 295
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 14 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 72
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 73 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 106
>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
Length = 497
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C K I D+FLL L+ WH DC++C C L + +++ N + C+ D+ R +G
Sbjct: 154 CAACDKPILDKFLLNVLERTWHADCVRCFDCHAPLTD---KCFSRENKLFCRNDFFRRYG 210
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C C + I ++V +AR+ V+HL CF C C
Sbjct: 211 TK--CGGCGQGISPSDLVRKARDKVFHLNCFTCLVC 244
Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 40 ECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
+C GCG+ I+ L+ KA D +H +C C C +L G LY N +CK DYL
Sbjct: 212 KCGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQL-STGEELYVLDDNKFICKDDYL 269
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA C K I D+FLL L+ WH DC++C C L + +++ N + C+ D+ R +G
Sbjct: 78 CAACDKPILDKFLLNVLERTWHADCVRCFDCHAPLTD---KCFSRENKLFCRNDFFRRYG 134
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C C + I ++V +AR+ V+HL CF C C
Sbjct: 135 TK--CGGCGQGISPSDLVRKARDKVFHLNCFTCLVC 168
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 40 ECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
+C GCG+ I+ L+ KA D +H +C C C +L G LY N +CK DYL
Sbjct: 136 KCGGCGQGISPSDLVRKARDKVFHLNCFTCLVCRKQL-STGEELYVLDDNKFICKDDYL 193
>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
latipes]
Length = 358
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYARLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR VYH+ECF C C+
Sbjct: 86 GIK--CAKCNTGFCSSDLVMRAREKVYHMECFRCSVCS 121
>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
gorilla]
gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
leucogenys]
Length = 346
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|157119548|ref|XP_001659418.1| lim homeobox protein [Aedes aegypti]
gi|108875286|gb|EAT39511.1| AAEL008685-PA [Aedes aegypti]
Length = 345
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P++CAGCG I DR+ L D WH CL+C C L E + Y + I CK DY R
Sbjct: 13 PEKCAGCGISIRDRYYLLVADRAWHNQCLRCCKCLANL-ETELSCYAREGNIYCKDDYYR 71
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
F S+ CA C I A E+VMRA++ ++H+ CF+C C
Sbjct: 72 HF-SSRRCARCGSGISASELVMRAKDLIFHVNCFSCTIC 109
>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
Length = 490
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 97 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 153
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA+++VYHL+CF C C+
Sbjct: 154 GTK--CSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCS 189
>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
Length = 346
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
Length = 346
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
Length = 346
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CL+C C G++ + + + CK D+ + +
Sbjct: 98 KCGGCHELILDRFILKVLERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRY 154
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ C+AC IP ++V RA+++VYHL+CF C C+
Sbjct: 155 GTK--CSACDMGIPPTQVVRRAQDHVYHLQCFLCAMCS 190
>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
Length = 346
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
boliviensis]
Length = 346
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 65 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 123
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 124 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 157
>gi|327262855|ref|XP_003216239.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Anolis
carolinensis]
Length = 349
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
Length = 348
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 67 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 125
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 126 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 159
>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
leucogenys]
Length = 356
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 134 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 167
>gi|345806127|ref|XP_548475.3| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Canis lupus
familiaris]
Length = 363
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA CG I DR LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
Length = 349
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
Length = 320
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 39 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 97
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 98 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 131
>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
Length = 356
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 134 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 167
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I+DRFLL+ D WHE+CL+C C L + Y++ + + CK DY +LF
Sbjct: 31 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLL---TMSCYSRDHKLYCKHDYQQLFA 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I E+VMRA +VYHL CF C C R
Sbjct: 88 TK--CSGCLEKISPTELVMRALESVYHLSCFCCCVCERR 124
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC + I DRF+LK L+ WH CLKC C L + + + ++ CK D+ + +
Sbjct: 44 KCGGCQELILDRFILKVLERTWHARCLKCNECGATLAD---KCFARNGMLFCKDDFFKRY 100
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CA C IP ++V RA++ VYHL+CFAC C
Sbjct: 101 GTK--CAGCDLGIPPTQIVRRAQDLVYHLQCFACVMC 135
>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
gorilla]
gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8
Length = 356
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 134 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 167
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC + I+DRFLL+ D WHE+CL+C C L + Y++ + + CK DY +LF
Sbjct: 33 CEGCHRPISDRFLLRMNDSSWHEECLQCSVCQQLL---TMSCYSRDHKLYCKHDYQQLFA 89
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I E+VMRA +VYHL CF C C R
Sbjct: 90 TK--CSGCLEKISPTELVMRALESVYHLSCFCCCVCERR 126
>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
Length = 278
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC I DRF+LK LD WH +CLKC C L + + + CK D+ R FG
Sbjct: 41 CAGCSGFILDRFILKVLDRPWHTECLKCMDCGTHLVD---KCFVRGGSTYCKEDFFRRFG 97
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V RA+++VYHLECF C C
Sbjct: 98 TK--CACCDQGIAPSQIVRRAQHHVYHLECFQCVLCG 132
>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
Length = 351
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 70 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 129 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 162
>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
Length = 363
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C+ CG I DR+LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 70 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 128
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CF C C +
Sbjct: 129 TK--CARCGRQIYASDWVRRARGNAYHLACFTCFSCKRQ 165
>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
Length = 356
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 75 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 133
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V RA+ NVYHL CFAC C
Sbjct: 134 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSC 167
>gi|345806125|ref|XP_003435390.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Canis lupus
familiaris]
Length = 392
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CA CG I DR LLK ++ WH CL+C C L + S Y K I CK DY FG
Sbjct: 99 CASCGLEILDRDLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 194
>gi|156379960|ref|XP_001631723.1| predicted protein [Nematostella vectensis]
gi|156218768|gb|EDO39660.1| predicted protein [Nematostella vectensis]
Length = 213
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
Q+CAGC I D+FLLK LD WH C++C C C L E +++ + CK D+ R
Sbjct: 3 QQCAGCQLPIADKFLLKVLDGVWHAQCVQCSDCKCPLTE---RCFSREGKLFCKTDFYRR 59
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+G+ C+ C + I +MV RA++ V+H++CF C C +
Sbjct: 60 YGTK--CSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQ 98
>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
[Ailuropoda melanoleuca]
Length = 574
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 303 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 361
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 362 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 398
>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
Length = 371
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 191
>gi|158254920|dbj|BAF83431.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQCLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|307213403|gb|EFN88839.1| LIM domain transcription factor LMO4-B [Harpegnathos saltator]
Length = 249
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%)
Query: 27 QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
+ + VP+ + G Q+CAGCG I +R+LL A+D YWH CLKC C L E+G + YT++
Sbjct: 128 KQEGVPSASTGIQQCAGCGLQIVERWLLLAMDRYWHNACLKCSYCGTALAEIGQSCYTRS 187
Query: 87 NLILCKRDYLRLFGS 101
++LCK DY R S
Sbjct: 188 GMVLCKSDYRRQIQS 202
>gi|259013450|ref|NP_001158468.1| ISL LIM homeobox 1 [Saccoglossus kowalevskii]
gi|197320557|gb|ACH68440.1| islet homeobox protein [Saccoglossus kowalevskii]
Length = 383
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+F+L+ A D+ WH CLKC C+ L E T + + + CKR Y+RLF
Sbjct: 16 CVGCGNQIQDQFILRVAPDLEWHASCLKCTDCNQYLDET-CTCFVRDSKTYCKRCYVRLF 74
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G+ CA C+ + VMRARN ++H++CF C C+
Sbjct: 75 GTK--CAKCNLGFSKNDFVMRARNKIFHIDCFRCVACS 110
>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
Length = 349
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCLVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|157137277|ref|XP_001663968.1| arrowhead [Aedes aegypti]
gi|108869746|gb|EAT33971.1| AAEL013763-PA, partial [Aedes aegypti]
Length = 211
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ C GC + ITDR++ + WH CL+C C C L E + Y K + CK DY++
Sbjct: 11 KSCGGCAEQITDRYIFEVSGCAWHGSCLRCSICYCSL-ERQVSCYFKDGEVYCKTDYIKK 69
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
F ++ CA CS+ I + V RAR+ V+HL CFAC C +
Sbjct: 70 FKAS--CAKCSRSISPSDWVRRARDFVFHLACFACDSCGRQ 108
>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
Length = 306
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C CG I D++LLK D+ WH CL C C LG ++ Y K I CK DY R +G
Sbjct: 96 CNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYG 154
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ C+ C + I + + V RA+ NVYHL CFAC C +
Sbjct: 155 TR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQ 191
>gi|410976694|ref|XP_003994749.1| PREDICTED: LIM/homeobox protein Lhx5 [Felis catus]
Length = 332
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++ CC+C+ + +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQ--CCECKT-NLSEKCFSREGKLYCKNDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C + I ++V +AR V+HL CF C CN
Sbjct: 62 TK--CAGCGQGISPSDLVRKARGKVFHLNCFTCMVCN 96
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 40 ECAGCGKHITDRFLL-KALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
+CAGCG+ I+ L+ KA +H +C C C+ +L G LY N +CK DYL
Sbjct: 63 KCAGCGQGISPSDLVRKARGKVFHLNCFTCMVCNKQLS-TGEELYVIDENKFVCKDDYL 120
>gi|124013499|gb|ABM87992.1| LHX6 [Macaca nemestrina]
Length = 198
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 30 AVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLI 89
+VP + G C+ CG I DR+LLK ++ WH CL+C C L + S Y K I
Sbjct: 61 SVP--SAGKNICSSCGLXILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEI 117
Query: 90 LCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
CK DY FG+ CA C + I A + V RAR N YHL CFAC C +
Sbjct: 118 XCKMDYFSRFGTK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQ 165
>gi|209737368|gb|ACI69553.1| Insulin gene enhancer protein isl-1 [Salmo salar]
Length = 356
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYVRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|410908008|ref|XP_003967483.1| PREDICTED: insulin gene enhancer protein ISL-2A-like [Takifugu
rubripes]
Length = 359
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++++ + D+ WH CLKC C L E T + + CKRDY RLF
Sbjct: 27 CVGCGSQIHDQYIMRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYARLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G CA C+ + ++VMRAR++VYH+ECF C C
Sbjct: 86 GIK--CAKCNMGFCSSDLVMRARDSVYHMECFRCSVC 120
>gi|391347312|ref|XP_003747908.1| PREDICTED: LIM domain only protein 3-like [Metaseiulus
occidentalis]
Length = 136
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 54 LKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIP 113
+K + +WH+DCLKC C CRL ++L+ K C+ DYLR FG C+ C + I
Sbjct: 1 MKVVGKFWHQDCLKCSVCGCRLT---TSLFEKHGAFFCREDYLRKFGVDNQCSGCFEAIQ 57
Query: 114 AFEMVMRARNNVYHLECFACQQC 136
A E+VMR+ ++VYH+ CF C C
Sbjct: 58 ASELVMRSSSHVYHVRCFCCFHC 80
>gi|348539206|ref|XP_003457080.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Oreochromis niloticus]
Length = 357
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|348539204|ref|XP_003457079.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Oreochromis niloticus]
Length = 349
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|160420135|ref|NP_001104188.1| ISL LIM homeobox 1 [Xenopus laevis]
gi|115528275|gb|AAI24895.1| LOC100126604 protein [Xenopus laevis]
gi|144952770|gb|ABP04039.1| islet-1 [Xenopus laevis]
gi|213626865|gb|AAI70282.1| Islet-1 [Xenopus laevis]
Length = 354
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|18858979|ref|NP_571282.1| LIM homeobox 1b [Danio rerio]
gi|2155289|gb|AAB58796.1| LIM class homeodomain protein [Danio rerio]
gi|190336839|gb|AAI62280.1| LIM homeobox 1b [Danio rerio]
gi|190340149|gb|AAI62303.1| LIM homeobox 1b [Danio rerio]
Length = 402
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L + +++ + CK D+ R +G
Sbjct: 4 CAGCERPILDRFLLSVLDRAWHAKCVQCCDCKCSLTD---RCFSREGRLYCKNDFFRRYG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ C C++ I ++V +AR+ V+HL CF C CN
Sbjct: 61 TK--CGGCAQGISPSDLVRKARSKVFHLNCFTCIMCN 95
>gi|391342699|ref|XP_003745653.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 405
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + C+ D+ + FG
Sbjct: 6 CAGCERPILDRFLLHVLDRSWHAKCVQCTDCRCSLIE---KCFSRDGKLYCRSDFYKRFG 62
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CA C + I ++V RAR+ V+HL+CF C C
Sbjct: 63 TK--CAGCGQGISPTDLVRRARSKVFHLKCFTCLVC 96
>gi|426238599|ref|XP_004013238.1| PREDICTED: LIM/homeobox protein Lhx1 [Ovis aries]
Length = 388
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R F
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRF- 59
Query: 101 STGYC-AACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G C + C++ I ++V RAR+ V+HL CF C CN
Sbjct: 60 --GLCVSGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
rubripes]
Length = 331
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
subclass-like [Saccoglossus kowalevskii]
Length = 283
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
C GC I DR+LLK WH CL+C C LG S +TK + I CK DY+R FG
Sbjct: 22 CLGCTSPIQDRYLLKVGTRSWHVRCLRCCICQTGLGGQQS-CFTKDDNIYCKMDYIRQFG 80
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ C+ C + I + + V +A+N+VYHL CFAC C
Sbjct: 81 TK--CSRCMRNIQSNDWVRKAKNHVYHLACFACDNC 114
>gi|44194074|gb|AAS46773.1| insulin enhancer binding protein [Rattus norvegicus]
Length = 326
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C+ L E T + + KRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYSKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA CS + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|225709660|gb|ACO10676.1| LIM/homeobox protein Awh [Caligus rogercresseyi]
Length = 274
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRL 98
+ C+ CG ITD+++L+ WH CL+C C + + S+ + K +L+ CK DY R
Sbjct: 23 ETCSDCGAGITDQYILQVAGQSWHSSCLRCSVCQ-EILDSHSSCFIKDDLLFCKLDYARA 81
Query: 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
FGS C CS+ I + V +AR +YHL CF+C C +
Sbjct: 82 FGSK--CFKCSRNISPSDWVRKAREQIYHLACFSCDGCKRQ 120
>gi|50253600|gb|AAT72002.1| isl1, partial [Xenopus (Silurana) tropicalis]
Length = 268
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYIRLY 75
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G CA C+ + VMRAR+ VYH+ECF C C+ +
Sbjct: 76 GIK--CAKCNIGFSKNDFVMRARSKVYHIECFRCVACSRQ 113
>gi|332025537|gb|EGI65700.1| LIM domain transcription factor LMO4 [Acromyrmex echinatior]
Length = 288
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 49/72 (68%)
Query: 27 QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKA 86
+ + VP+ + G ++CA CG I +R+LL A+D YWH CLKC C+ LGE+G + YTK+
Sbjct: 127 KQEGVPSGSTGLRQCAACGVQIVERWLLLAMDRYWHIGCLKCTYCNVVLGEIGQSCYTKS 186
Query: 87 NLILCKRDYLRL 98
+ILCK DY R
Sbjct: 187 GMILCKADYRRF 198
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,042,901,167
Number of Sequences: 23463169
Number of extensions: 73604004
Number of successful extensions: 228240
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2252
Number of HSP's successfully gapped in prelim test: 3269
Number of HSP's that attempted gapping in prelim test: 211903
Number of HSP's gapped (non-prelim): 12898
length of query: 139
length of database: 8,064,228,071
effective HSP length: 104
effective length of query: 35
effective length of database: 9,919,025,791
effective search space: 347165902685
effective search space used: 347165902685
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 71 (32.0 bits)