BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy284
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8JFQ2|RBTN1_DANRE Rhombotin-1 OS=Danio rerio GN=lmo1 PE=2 SV=1
Length = 155
Score = 186 bits (471), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 99/123 (80%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + ++G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 1 MVLDKEEGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 58
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 59 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 118
Query: 137 NHR 139
N R
Sbjct: 119 NQR 121
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 87 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 141
>sp|Q3B8H4|RBTN1_XENLA Rhombotin-1 OS=Xenopus laevis GN=lmo1 PE=2 SV=1
Length = 156
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 99/123 (80%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M ++ + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLEKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>sp|Q0P5B3|RBTN1_BOVIN Rhombotin-1 OS=Bos taurus GN=LMO1 PE=2 SV=1
Length = 156
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDQYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>sp|P25800|RBTN1_HUMAN Rhombotin-1 OS=Homo sapiens GN=LMO1 PE=2 SV=1
Length = 156
Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQMDY 142
>sp|Q924W9|RBTN1_MOUSE Rhombotin-1 OS=Mus musculus GN=Lmo1 PE=2 SV=1
Length = 156
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 98/123 (79%), Gaps = 2/123 (1%)
Query: 17 MDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76
M + + G P Q + CAGC + I DR+LLKALD YWHEDCLKC CCDCRLG
Sbjct: 2 MVLDKEDGVPMLSVQPKGKQ--KGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLG 59
Query: 77 EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
EVGSTLYTKANLILC+RDYLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ C
Sbjct: 60 EVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLC 119
Query: 137 NHR 139
N R
Sbjct: 120 NQR 122
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQVDY 142
>sp|Q9YH16|LMO3_XENLA LIM domain only protein 3 OS=Xenopus laevis GN=lmo3 PE=2 SV=1
Length = 156
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%), Gaps = 2/116 (1%)
Query: 24 GAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY 83
G Q P+ P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLY
Sbjct: 9 GIQMLSVQPDTK--PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLY 66
Query: 84 TKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
TKANLILC+RDYLRLFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 67 TKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 122
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 88 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 146
Query: 100 GSTGYCA 106
GY A
Sbjct: 147 MKEGYSA 153
>sp|Q5RBW7|LMO3_PONAB LIM domain only protein 3 OS=Pongo abelii GN=LMO3 PE=2 SV=1
Length = 145
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>sp|Q8BZL8|LMO3_MOUSE LIM domain only protein 3 OS=Mus musculus GN=Lmo3 PE=2 SV=1
Length = 145
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>sp|Q8TAP4|LMO3_HUMAN LIM domain only protein 3 OS=Homo sapiens GN=LMO3 PE=2 SV=1
Length = 145
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>sp|Q2KIA3|LMO3_BOVIN LIM domain only protein 3 OS=Bos taurus GN=LMO3 PE=2 SV=1
Length = 145
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA++NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>sp|Q99MB5|LMO3_RAT LIM domain only protein 3 OS=Rattus norvegicus GN=Lmo3 PE=2 SV=2
Length = 145
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 95/105 (90%), Gaps = 1/105 (0%)
Query: 36 QGPQE-CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRD 94
+G Q+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RD
Sbjct: 7 KGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRD 66
Query: 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
YLRLFG+TG CAACSK+IPAFEMVMRAR+NVYHL+CFACQ CN R
Sbjct: 67 YLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQR 111
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A D +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>sp|Q503U0|LMO3_DANRE LIM domain only protein 3 OS=Danio rerio GN=lmo3 PE=2 SV=1
Length = 145
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 91/102 (89%)
Query: 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97
P+ CAGC + I DR+LLKALD YWHEDCLKC CCDCRLGEVGSTLYTKANLILC+RDYLR
Sbjct: 10 PKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
Query: 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
LFG TG CAACSK+IPAFEMVMRA+ NVYHL+CFACQ CN R
Sbjct: 70 LFGVTGNCAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQR 111
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 CAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
CA C K I +++A + +H DC C C+ R VG + K N+ILC+ DY
Sbjct: 77 CAACSKLIPAFEMVMRAKENVYHLDCFACQLCNQRFC-VGDKFFLKNNMILCQTDYEEGL 135
Query: 100 GSTGY 104
GY
Sbjct: 136 MKEGY 140
>sp|Q801P0|LMO4B_XENLA LIM domain transcription factor LMO4-B OS=Xenopus laevis GN=lmo4-b
PE=2 SV=1
Length = 171
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 85/121 (70%)
Query: 19 VKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
V + T AV NN P+ CAGCG I DRFLL ++D YWH CLKC CC +LGE+
Sbjct: 2 VNNRISESTTTAVSNNGSPPKACAGCGGKIADRFLLYSMDRYWHTRCLKCSCCQAQLGEI 61
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
G++ YTK+ +ILC+ DY+RLFG++G C AC + IPA EMVMRA+ +VYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRN 121
Query: 139 R 139
R
Sbjct: 122 R 122
>sp|Q8AW92|LMO4A_XENLA LIM domain transcription factor LMO4-A OS=Xenopus laevis GN=lmo4-a
PE=2 SV=1
Length = 171
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 85/121 (70%)
Query: 19 VKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
V + T AV +N P+ CAGCG I DRFLL ++D YWH CLKC CC +LGE+
Sbjct: 2 VNNRSSESTTTAVSSNGSPPKACAGCGGKIGDRFLLYSMDRYWHTRCLKCSCCQAQLGEI 61
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
G++ YTK+ +ILC+ DY+RLFG++G C AC + IPA EMVMRA+ +VYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGNSGACNACGQSIPASEMVMRAQGSVYHLKCFTCATCRN 121
Query: 139 R 139
R
Sbjct: 122 R 122
>sp|Q5FVB2|LMO41_XENTR LIM domain transcription factor LMO4.1 OS=Xenopus tropicalis
GN=lmo4.1 PE=2 SV=1
Length = 167
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 86/121 (71%)
Query: 19 VKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV 78
V + T AV +N P+ CAGCG I DRFLL +++ YWH CLKC CC +LGE+
Sbjct: 2 VNNRVTESTTTAVSSNGGPPKACAGCGGKIADRFLLYSMERYWHTRCLKCSCCQAQLGEI 61
Query: 79 GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138
G++ YTK+ +ILC+ DY+RLFGS+G C+AC + IPA EMVMRA+ +VYHL+CF C C +
Sbjct: 62 GTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPASEMVMRAQGSVYHLKCFTCATCRN 121
Query: 139 R 139
R
Sbjct: 122 R 122
>sp|Q6DJ06|LMO42_XENTR LIM domain transcription factor LMO4.2 OS=Xenopus tropicalis
GN=lmo4.2 PE=2 SV=1
Length = 165
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LGE+G++ YT
Sbjct: 7 SSQPPPVTASTLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGEIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>sp|P61969|LMO4_MOUSE LIM domain transcription factor LMO4 OS=Mus musculus GN=Lmo4 PE=1
SV=1
Length = 165
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>sp|P61968|LMO4_HUMAN LIM domain transcription factor LMO4 OS=Homo sapiens GN=LMO4 PE=1
SV=1
Length = 165
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>sp|Q3SWZ8|LMO4_BOVIN LIM domain transcription factor LMO4 OS=Bos taurus GN=LMO4 PE=2
SV=1
Length = 165
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%)
Query: 25 AQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYT 84
+ Q V + + CAGCG I DRFLL A+D YWH CLKC CC +LG++G++ YT
Sbjct: 7 SSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYT 66
Query: 85 KANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
K+ +ILC+ DY+RLFG++G C+AC + IPA E+VMRA+ NVYHL+CF C C +R
Sbjct: 67 KSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNR 121
>sp|Q5M8V8|RBTN2_XENTR Rhombotin-2 OS=Xenopus tropicalis GN=lmo2 PE=2 SV=1
Length = 158
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D T + + +P + C GC + I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PTDEPVDEVLQIPPSLL---TCGGCQQSIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAFEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>sp|P25791|RBTN2_HUMAN Rhombotin-2 OS=Homo sapiens GN=LMO2 PE=1 SV=1
Length = 158
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>sp|P25801|RBTN2_MOUSE Rhombotin-2 OS=Mus musculus GN=Lmo2 PE=1 SV=1
Length = 158
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D +++ + +P + C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLD-PSEEPVDEVLQIPPSLL---TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>sp|Q9PTJ3|RBTN2_DANRE Rhombotin-2 OS=Danio rerio GN=lmo2 PE=2 SV=1
Length = 159
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 15 MSMDVKTQQGAQQTKAVPNNAQGPQE---CAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
M+ ++ + + V Q P C GC + I DRF LKA++ YWHEDCL C C
Sbjct: 1 MASTIERKTLEANEEPVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I AFEM MR R+ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>sp|Q1LZ94|RBTN2_BOVIN Rhombotin-2 OS=Bos taurus GN=LMO2 PE=2 SV=1
Length = 158
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D + + + P+ C GC ++I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLDPSEEPVDEVLQMPPSLLT----CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>sp|Q90XH3|RBTN2_XENLA Rhombotin-2 OS=Xenopus laevis GN=lmo2 PE=2 SV=1
Length = 158
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 12 INRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCC 71
I R S+D + + + P+ C GC + I DR+ LKA+D YWHEDCL C C
Sbjct: 5 IERKSLDPADEPVDEVLQIPPSLLT----CGGCQQSIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 72 DCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
CRLGEVG LY K LC+RDYLRLFG G CA+C I A+EM MR ++ VYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDNRIRAYEMTMRVKDKVYHLECF 120
Query: 132 ACQQCN 137
C C
Sbjct: 121 KCAACQ 126
>sp|Q90881|LHX9_CHICK LIM/homeobox protein Lhx9 OS=Gallus gallus GN=LHX9 PE=2 SV=2
Length = 397
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T P + + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 52 QMNGRETNMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESEL 109
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 110 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 165
>sp|A2PZF9|LHX9_GLARU LIM/homeobox protein Lhx9 OS=Glandirana rugosa GN=lhx9 PE=2 SV=1
Length = 379
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 13 NRMSMDVKTQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCD 72
NR++ + Q ++T+ P + + P CAGCG I+DR+ L A+D WH CLK CC+
Sbjct: 27 NRLAKTI--QVNGRETRMPPLSPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCE 82
Query: 73 CRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECF 131
C+L E T + K I CK DY R F S CA C I A E+VMRAR +VYHL CF
Sbjct: 83 CKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEIVMRARESVYHLSCF 141
Query: 132 ACQQCN 137
C CN
Sbjct: 142 TCTTCN 147
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
Length = 397
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 51 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 108
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 109 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 165
>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
Length = 388
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 21 TQQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVG 79
TQ + P + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 42 TQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESE 99
Query: 80 STLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 100 LTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCN 156
>sp|A2I8Z7|LHX9_ASTFA LIM/homeobox protein Lhx9 OS=Astyanax fasciatus GN=lhx9 PE=2 SV=1
Length = 377
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 33 QMNGRETSMPSVSPEKPALCAGCGSKISDRYYLLAVDKQWHLRCLKC--CECKLALESEL 90
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 91 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTSCN 146
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
Length = 397
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I+DR+ L A+D WH CLKC
Sbjct: 40 RSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC + IP ++V RA++ VYHL CFAC C +
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVCKRQ 121
>sp|Q1LWV4|LHX9_DANRE LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
Length = 396
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q ++T + + P CAGCG I+DR+ L A+D WH CLKC C+C+L E
Sbjct: 52 QMNGRETTMPSMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESEL 109
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R F S CA C I A EMVMRAR++VYHL CF C CN
Sbjct: 110 TCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHLSCFTCTTCN 165
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+CAGC +HI DRF+LK LD +WH CLKC C +L E +++ + + CK D+ + F
Sbjct: 27 QCAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAE---KCFSRGDSVYCKDDFFKRF 83
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
G+ CAAC + IP ++V RA+ VYHL CFAC C
Sbjct: 84 GTK--CAACQQGIPPTQVVRRAQEFVYHLHCFACIVC 118
>sp|Q68EY3|LHX9_XENLA LIM/homeobox protein Lhx9 OS=Xenopus laevis GN=lhx9 PE=2 SV=1
Length = 331
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 22 QQGAQQTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGS 80
Q +++T+ N + P CAGCG I+DR+ L A+D WH CLK CC+C+L E
Sbjct: 54 QVNSRETRMPSLNPEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLTLESEL 111
Query: 81 TLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
T + K I CK DY R S CA C I A EMVMRAR +VYHL CF C CN
Sbjct: 112 TCFAKDGSIYCKEDYYRF--SVKRCARCHLGISASEMVMRARESVYHLSCFTCTTCN 166
>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
Length = 397
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 14 RMSMDVKTQQGAQ----QTKAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69
R + + +GAQ P + + P CAGCG I DR+ L A+D WH CLKC
Sbjct: 40 RSKSEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKC- 98
Query: 70 CCDCRLG-EVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHL 128
C+C+L E T + K I CK DY R F S CA C I A EMVMRAR++VYHL
Sbjct: 99 -CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISASEMVMRARDSVYHL 156
Query: 129 ECFACQQCN 137
CF C CN
Sbjct: 157 SCFTCSTCN 165
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LK LD +WH CLKC C +L + +++ + + CK D+ + FG
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFG 84
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQC 136
+ CAAC + IP ++V RA++ VYHL CFAC C
Sbjct: 85 TK--CAACQQGIPPTQVVRRAQDFVYHLHCFACIVC 118
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 124
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDY 95
Q PQ CAGC +HI D+F+LK LD +WH CLKC C +L + +++A + CK D+
Sbjct: 26 QIPQ-CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDF 81
Query: 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ FG+ C AC + IP ++V +A++ VYHL CFAC CN +
Sbjct: 82 FKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQ 123
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFG 90
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 91 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 127
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 5/99 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC +HI DRF+LKALD +WH CLKC C L E +++ + CK D+ + FG
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESLYCKDDFFKRFG 72
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
+ CAAC IP ++V RA++ VYHL CFAC C +
Sbjct: 73 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQ 109
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
Length = 406
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=2 SV=2
Length = 406
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLKC C+C+L E T ++K I CK DY R F
Sbjct: 53 CAGCGGKISDRYYLLAVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF 110
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I A EMVMRAR+ VYHL CF C CN
Sbjct: 111 -SVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCN 147
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C GC I DRF+LK D WH LKC C +L E +++ NL+ CK D+ + F
Sbjct: 281 KCTGCEHRIFDRFILKVQDKPWHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRF 337
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139
G+ C AC IP E++ RA++NVYHLE F C C+ +
Sbjct: 338 GTK--CTACGHGIPPTEVIRRAQDNVYHLEGFCCFLCHEK 375
>sp|P36198|LHX2_RAT LIM/homeobox protein Lhx2 OS=Rattus norvegicus GN=Lhx2 PE=2 SV=1
Length = 426
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG-EVGSTLYTKANLILCKRDYLRLF 99
CAGCG I+DR+ L A+D WH CLK CC+C+L E T ++K I CK DY R F
Sbjct: 52 CAGCGGKISDRYYLLAVDKQWHMRCLK--CCECKLNLESELTCFSKDGSIYCKEDYYRRF 109
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
S CA C I EMVMRAR+ VYHL CF C CN
Sbjct: 110 -SVQRCARCHLGISESEMVMRARDLVYHLNCFTCTTCN 146
>sp|P29673|APTE_DROME Protein apterous OS=Drosophila melanogaster GN=ap PE=2 SV=1
Length = 469
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 40 ECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
+C+GCG+ I DRF L A++ WH CL+C C L E S+ Y++ I CK DY F
Sbjct: 147 DCSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFF 205
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G T C+ C I + E+VMRARN V+H+ CF C C+
Sbjct: 206 G-TRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCH 242
>sp|P29674|LHX1_XENLA LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
Length = 403
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFG 60
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA C++ I ++V RAR+ V+HL CF C CN
Sbjct: 61 TK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCN 95
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 40 ECAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYT-KANLILCKRDYL 96
+CAGC + I+ L++ A +H +C C C+ +L G LY N +CK DYL
Sbjct: 62 KCAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLS-TGEELYIIDENKFVCKEDYL 119
>sp|P37137|LHX5_XENLA LIM/homeobox protein Lhx5 OS=Xenopus laevis GN=lhx5 PE=1 SV=2
Length = 402
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 41 CAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100
CAGC + I DRFLL LD WH C++C C C L E +++ + CK D+ R FG
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFG 61
Query: 101 STGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
+ CA CS I ++V +ARN V+HL CF C CN
Sbjct: 62 TK--CAGCSLGISPSDLVRKARNKVFHLNCFTCMVCN 96
>sp|P53409|ISL3_ONCTS Insulin gene enhancer protein ISL-3 OS=Oncorhynchus tschawytscha
GN=isl3 PE=2 SV=1
Length = 363
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 41 CAGCGKHITDRFLLK-ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99
C GCG I D+++L+ + D+ WH CLKC C L E T + + CKRDY+RLF
Sbjct: 27 CVGCGSQIHDQYILRVSPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLF 85
Query: 100 GSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCN 137
G CA C+ + ++VMRAR+NVYH+ECF C C+
Sbjct: 86 GIK--CAKCNLGFSSSDLVMRARDNVYHIECFRCSVCS 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,493,391
Number of Sequences: 539616
Number of extensions: 1812381
Number of successful extensions: 6502
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 5481
Number of HSP's gapped (non-prelim): 795
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)