Query psy284
Match_columns 139
No_of_seqs 149 out of 1059
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:14:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cup_A Skeletal muscle LIM-pro 100.0 9.8E-29 3.4E-33 153.5 7.4 97 37-137 4-101 (101)
2 2xjy_A Rhombotin-2; oncoprotei 99.9 5.2E-28 1.8E-32 156.8 8.5 101 38-138 2-102 (131)
3 2xqn_T Testin, TESS; metal-bin 99.9 1.4E-27 4.8E-32 153.8 8.9 98 38-139 3-102 (126)
4 1rut_X Flinc4, fusion protein 99.9 5E-27 1.7E-31 160.7 7.4 101 38-138 5-105 (188)
5 2rgt_A Fusion of LIM/homeobox 99.9 1.3E-26 4.4E-31 156.2 8.1 97 37-138 5-101 (169)
6 2jtn_A LIM domain-binding prot 99.9 4.3E-26 1.5E-30 155.4 10.3 100 35-139 57-156 (182)
7 1b8t_A Protein (CRP1); LIM dom 99.9 1.1E-24 3.6E-29 149.6 7.5 101 36-139 5-151 (192)
8 1m3v_A FLIN4, fusion of the LI 99.8 6.1E-20 2.1E-24 117.4 4.9 85 37-123 4-88 (122)
9 2dj7_A Actin-binding LIM prote 99.7 4E-18 1.4E-22 101.2 6.8 72 31-107 8-79 (80)
10 1iml_A CRIP, cysteine rich int 99.7 5E-18 1.7E-22 99.8 5.7 72 39-114 1-73 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.7 5E-18 1.7E-22 101.0 3.8 72 37-112 6-77 (81)
12 1j2o_A FLIN2, fusion of rhombo 99.7 2E-17 6.7E-22 104.5 6.0 70 38-109 3-72 (114)
13 1x64_A Alpha-actinin-2 associa 99.7 6.1E-17 2.1E-21 97.9 7.3 68 34-106 21-88 (89)
14 2cu8_A Cysteine-rich protein 2 99.7 4.9E-17 1.7E-21 95.5 5.9 68 36-107 7-75 (76)
15 2d8y_A Eplin protein; LIM doma 99.7 8.3E-17 2.9E-21 97.7 7.0 71 34-108 11-81 (91)
16 2dar_A PDZ and LIM domain prot 99.7 1.1E-16 3.7E-21 97.0 6.8 68 35-107 22-89 (90)
17 2cur_A Skeletal muscle LIM-pro 99.7 1E-16 3.6E-21 92.4 6.0 66 37-107 4-69 (69)
18 1x62_A C-terminal LIM domain p 99.7 5.4E-17 1.9E-21 96.1 4.6 67 35-106 12-78 (79)
19 1x68_A FHL5 protein; four-and- 99.7 4.3E-17 1.5E-21 95.8 3.1 68 38-109 5-75 (76)
20 1wyh_A SLIM 2, skeletal muscle 99.6 2.2E-16 7.6E-21 91.7 5.8 67 37-107 4-71 (72)
21 2l4z_A DNA endonuclease RBBP8, 99.6 3.6E-16 1.2E-20 99.9 7.2 67 34-100 57-123 (123)
22 2d8z_A Four and A half LIM dom 99.6 2.3E-16 7.8E-21 91.2 5.7 66 37-107 4-69 (70)
23 1x4k_A Skeletal muscle LIM-pro 99.6 2.3E-16 7.7E-21 91.7 5.6 66 38-107 5-71 (72)
24 2co8_A NEDD9 interacting prote 99.6 7.9E-17 2.7E-21 96.0 3.3 71 29-101 6-78 (82)
25 1g47_A Pinch protein; LIM doma 99.6 2.2E-16 7.5E-21 92.9 5.2 67 36-106 9-76 (77)
26 1x4l_A Skeletal muscle LIM-pro 99.6 3.6E-16 1.2E-20 90.9 5.1 63 37-101 4-69 (72)
27 1nyp_A Pinch protein; LIM doma 99.6 4.2E-16 1.4E-20 89.1 4.7 61 38-101 5-65 (66)
28 1x3h_A Leupaxin; paxillin fami 99.6 9.8E-16 3.3E-20 90.7 5.4 65 38-107 15-79 (80)
29 1b8t_A Protein (CRP1); LIM dom 99.6 1.1E-15 3.8E-20 104.6 6.3 73 36-112 113-185 (192)
30 2d8x_A Protein pinch; LIM doma 99.6 2E-15 6.7E-20 87.2 6.0 63 36-101 3-65 (70)
31 1x61_A Thyroid receptor intera 99.6 1.6E-15 5.6E-20 88.0 5.3 62 37-100 4-66 (72)
32 2cuq_A Four and A half LIM dom 99.6 1.8E-15 6E-20 89.6 5.5 66 37-107 14-79 (80)
33 2dlo_A Thyroid receptor-intera 99.6 1.9E-15 6.4E-20 89.7 5.6 66 37-107 14-80 (81)
34 2ehe_A Four and A half LIM dom 99.6 7.7E-16 2.6E-20 91.6 2.1 65 38-106 15-80 (82)
35 2cor_A Pinch protein; LIM doma 99.6 5.1E-15 1.8E-19 87.5 5.7 62 36-101 13-74 (79)
36 1x63_A Skeletal muscle LIM-pro 99.6 5.5E-15 1.9E-19 87.8 5.6 66 37-106 14-80 (82)
37 2l3k_A Rhombotin-2, linker, LI 99.5 1E-14 3.5E-19 93.1 6.6 75 39-116 9-84 (123)
38 2ehe_A Four and A half LIM dom 99.5 5E-16 1.7E-20 92.5 0.2 52 86-139 1-52 (82)
39 2egq_A FHL1 protein; LIM domai 99.5 1.2E-15 4.1E-20 89.7 1.6 51 87-139 2-55 (77)
40 3f6q_B LIM and senescent cell 99.5 8.8E-15 3E-19 84.7 4.9 63 36-100 9-72 (72)
41 1x6a_A LIMK-2, LIM domain kina 99.5 1.5E-14 5E-19 85.8 5.1 66 37-106 14-80 (81)
42 1x63_A Skeletal muscle LIM-pro 99.5 2.2E-15 7.6E-20 89.6 1.4 51 87-139 2-52 (82)
43 1wig_A KIAA1808 protein; LIM d 99.5 1.8E-14 6.2E-19 83.9 4.8 63 37-101 4-66 (73)
44 1v6g_A Actin binding LIM prote 99.5 9.6E-15 3.3E-19 86.7 2.1 49 87-139 2-50 (81)
45 2cuq_A Four and A half LIM dom 99.5 5.6E-15 1.9E-19 87.4 0.7 50 86-139 1-50 (80)
46 1x3h_A Leupaxin; paxillin fami 99.5 6.2E-15 2.1E-19 87.2 0.8 50 86-139 1-50 (80)
47 2egq_A FHL1 protein; LIM domai 99.5 5.5E-14 1.9E-18 82.5 4.4 58 38-97 15-76 (77)
48 1x6a_A LIMK-2, LIM domain kina 99.4 7.3E-15 2.5E-19 87.1 0.2 49 87-139 2-50 (81)
49 2iyb_E Testin, TESS, TES; LIM 99.4 5.6E-14 1.9E-18 80.0 3.9 59 38-98 2-64 (65)
50 2dlo_A Thyroid receptor-intera 99.4 1.8E-14 6.1E-19 85.5 1.2 48 86-138 2-49 (81)
51 1rut_X Flinc4, fusion protein 99.3 2.1E-12 7.1E-17 88.0 4.1 91 40-133 71-170 (188)
52 1v6g_A Actin binding LIM prote 99.3 2.6E-12 8.8E-17 76.0 3.9 62 38-101 15-76 (81)
53 2xjy_A Rhombotin-2; oncoprotei 99.2 1.1E-11 3.6E-16 79.7 4.8 61 40-101 68-129 (131)
54 2rgt_A Fusion of LIM/homeobox 99.2 4.1E-11 1.4E-15 80.2 6.1 88 38-132 65-156 (169)
55 2xqn_T Testin, TESS; metal-bin 99.1 3.7E-11 1.3E-15 76.7 4.8 60 38-99 63-125 (126)
56 1x4k_A Skeletal muscle LIM-pro 99.1 2E-11 6.8E-16 70.5 2.9 40 98-139 3-42 (72)
57 1x68_A FHL5 protein; four-and- 99.1 3.2E-11 1.1E-15 70.4 2.9 40 98-139 3-44 (76)
58 1wig_A KIAA1808 protein; LIM d 99.1 2.5E-11 8.4E-16 70.4 1.9 38 98-139 3-40 (73)
59 3f6q_B LIM and senescent cell 99.1 3E-11 1E-15 69.6 1.8 40 98-139 9-48 (72)
60 1wyh_A SLIM 2, skeletal muscle 99.1 3.7E-11 1.3E-15 69.3 2.1 40 98-139 3-42 (72)
61 1x61_A Thyroid receptor intera 99.1 7E-11 2.4E-15 68.2 3.0 36 104-139 7-42 (72)
62 1x4l_A Skeletal muscle LIM-pro 99.1 6.4E-11 2.2E-15 68.4 2.7 36 104-139 7-44 (72)
63 2iyb_E Testin, TESS, TES; LIM 99.0 7.3E-11 2.5E-15 66.8 2.1 36 104-139 4-41 (65)
64 2l3k_A Rhombotin-2, linker, LI 99.0 3.1E-11 1.1E-15 76.9 0.4 44 96-139 2-45 (123)
65 2dar_A PDZ and LIM domain prot 99.0 7.7E-11 2.6E-15 71.0 2.1 40 95-138 20-59 (90)
66 1nyp_A Pinch protein; LIM doma 99.0 7.3E-11 2.5E-15 67.0 1.2 36 99-138 4-39 (66)
67 1g47_A Pinch protein; LIM doma 99.0 1.9E-10 6.5E-15 67.2 3.0 36 104-139 13-48 (77)
68 2jtn_A LIM domain-binding prot 99.0 4.3E-10 1.5E-14 76.1 4.6 60 38-98 119-180 (182)
69 2d8x_A Protein pinch; LIM doma 99.0 3E-10 1E-14 65.1 2.7 33 104-138 7-39 (70)
70 2d8z_A Four and A half LIM dom 99.0 2.8E-10 9.7E-15 65.2 2.5 37 99-139 4-40 (70)
71 2cur_A Skeletal muscle LIM-pro 98.9 3.2E-10 1.1E-14 64.8 2.3 34 104-139 7-40 (69)
72 1x62_A C-terminal LIM domain p 98.9 4.9E-10 1.7E-14 65.8 2.8 34 104-139 17-50 (79)
73 2cu8_A Cysteine-rich protein 2 98.9 6.1E-10 2.1E-14 64.9 2.9 35 104-139 11-45 (76)
74 2dj7_A Actin-binding LIM prote 98.9 9.4E-10 3.2E-14 64.8 2.9 35 103-138 16-50 (80)
75 2cor_A Pinch protein; LIM doma 98.9 5.8E-10 2E-14 65.5 1.8 33 104-138 17-49 (79)
76 1iml_A CRIP, cysteine rich int 98.9 1.2E-09 4E-14 63.7 2.7 35 104-139 2-36 (76)
77 1x64_A Alpha-actinin-2 associa 98.8 1.2E-09 4.2E-14 65.5 2.8 34 104-139 27-60 (89)
78 2co8_A NEDD9 interacting prote 98.8 1.2E-09 4E-14 64.6 2.4 36 103-139 16-51 (82)
79 2l4z_A DNA endonuclease RBBP8, 98.8 1.8E-09 6.3E-14 68.6 3.1 34 104-138 63-96 (123)
80 1j2o_A FLIN2, fusion of rhombo 98.8 3E-09 1E-13 66.7 3.8 36 103-139 4-39 (114)
81 2cup_A Skeletal muscle LIM-pro 98.8 2.7E-09 9.3E-14 65.3 3.4 36 104-139 7-42 (101)
82 1a7i_A QCRP2 (LIM1); LIM domai 98.8 2.3E-09 7.8E-14 63.1 2.4 34 104-138 9-42 (81)
83 2d8y_A Eplin protein; LIM doma 98.7 6.6E-09 2.3E-13 62.5 3.0 34 104-138 17-50 (91)
84 1m3v_A FLIN4, fusion of the LI 98.7 3.9E-09 1.4E-13 66.9 1.6 35 104-139 7-41 (122)
85 1zfo_A LAsp-1; LIM domain, zin 98.3 3.3E-07 1.1E-11 44.0 1.7 29 38-66 3-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.1 7.7E-07 2.6E-11 42.6 0.9 27 104-131 5-31 (31)
87 2cs3_A Protein C14ORF4, MY039 92.3 0.11 3.8E-06 29.8 2.7 35 35-69 12-46 (93)
88 1t1h_A Gspef-atpub14, armadill 85.2 2.2 7.4E-05 23.6 4.8 47 65-114 8-55 (78)
89 2ect_A Ring finger protein 126 84.6 1.3 4.3E-05 24.6 3.6 11 104-114 54-64 (78)
90 1iym_A EL5; ring-H2 finger, ub 83.5 2.1 7E-05 21.8 3.9 27 86-112 27-53 (55)
91 2djb_A Polycomb group ring fin 82.9 1.3 4.3E-05 24.3 3.1 46 66-114 16-62 (72)
92 2y43_A E3 ubiquitin-protein li 80.9 1.6 5.4E-05 25.5 3.2 46 66-114 23-69 (99)
93 2d8t_A Dactylidin, ring finger 80.5 2.6 8.9E-05 22.9 3.8 30 85-114 32-61 (71)
94 4ayc_A E3 ubiquitin-protein li 80.5 2.6 9E-05 26.3 4.3 46 66-114 54-99 (138)
95 2ecy_A TNF receptor-associated 79.8 2.1 7.1E-05 22.9 3.2 46 66-114 16-62 (66)
96 2ct0_A Non-SMC element 1 homol 79.3 2.7 9.1E-05 23.6 3.6 20 32-51 9-28 (74)
97 2ep4_A Ring finger protein 24; 79.0 2.4 8.3E-05 23.1 3.4 29 86-114 36-64 (74)
98 2kiz_A E3 ubiquitin-protein li 79.0 2.2 7.6E-05 22.9 3.2 28 87-114 36-63 (69)
99 2ecn_A Ring finger protein 141 78.1 1.3 4.4E-05 24.0 2.0 46 66-115 16-61 (70)
100 2ecm_A Ring finger and CHY zin 77.7 2.2 7.6E-05 21.7 2.8 29 86-114 27-55 (55)
101 2ckl_A Polycomb group ring fin 77.4 2.9 0.0001 24.8 3.6 47 65-114 15-62 (108)
102 2csy_A Zinc finger protein 183 76.6 2 6.8E-05 24.0 2.6 45 66-113 16-60 (81)
103 2ysl_A Tripartite motif-contai 76.6 4.9 0.00017 21.7 4.2 46 66-114 21-69 (73)
104 2ecw_A Tripartite motif-contai 74.6 4.5 0.00015 22.4 3.8 46 66-114 20-71 (85)
105 1chc_A Equine herpes virus-1 r 74.1 2.7 9.3E-05 22.4 2.6 32 83-114 21-52 (68)
106 2l0b_A E3 ubiquitin-protein li 72.9 4.4 0.00015 23.3 3.5 49 66-114 41-89 (91)
107 3vk6_A E3 ubiquitin-protein li 71.9 5.2 0.00018 23.9 3.6 47 68-116 4-51 (101)
108 4ap4_A E3 ubiquitin ligase RNF 71.7 7.8 0.00027 23.4 4.7 74 39-115 49-126 (133)
109 2kre_A Ubiquitin conjugation f 71.1 9 0.00031 22.5 4.6 49 63-114 27-75 (100)
110 1x4j_A Ring finger protein 38; 70.7 5.8 0.0002 21.6 3.6 28 87-114 45-72 (75)
111 4g9i_A Hydrogenase maturation 70.7 1.8 6E-05 35.3 1.8 36 36-76 104-139 (772)
112 4ap4_A E3 ubiquitin ligase RNF 70.4 8.6 0.00029 23.2 4.7 39 38-76 7-59 (133)
113 2xeu_A Ring finger protein 4; 69.6 3.4 0.00012 21.6 2.3 33 82-114 24-56 (64)
114 1wgm_A Ubiquitin conjugation f 68.7 11 0.00037 22.1 4.6 49 63-114 20-69 (98)
115 2ecv_A Tripartite motif-contai 68.2 4 0.00014 22.6 2.6 46 66-114 20-71 (85)
116 1v9x_A Poly (ADP-ribose) polym 67.6 2.1 7.1E-05 26.3 1.2 29 104-132 22-60 (114)
117 2ct2_A Tripartite motif protei 67.5 5.6 0.00019 22.3 3.1 32 83-114 34-68 (88)
118 2ckl_B Ubiquitin ligase protei 67.2 4 0.00014 26.2 2.6 47 65-114 54-102 (165)
119 3ng2_A RNF4, snurf, ring finge 67.2 2.8 9.6E-05 22.5 1.7 30 85-114 34-63 (71)
120 3fl2_A E3 ubiquitin-protein li 66.5 6.8 0.00023 23.8 3.5 47 65-114 52-99 (124)
121 3od8_A Poly [ADP-ribose] polym 66.5 1.5 5.1E-05 27.0 0.4 29 104-132 40-78 (116)
122 2ea6_A Ring finger protein 4; 65.0 4.1 0.00014 21.6 2.1 29 85-113 39-67 (69)
123 3lrq_A E3 ubiquitin-protein li 64.9 3.8 0.00013 24.0 2.1 46 66-114 23-70 (100)
124 2eqg_A Tumor necrosis factor, 64.7 4.8 0.00016 20.1 2.0 19 82-100 22-40 (49)
125 3odc_A Poly [ADP-ribose] polym 64.6 1.8 6.1E-05 26.4 0.5 29 104-132 21-61 (111)
126 1g25_A CDK-activating kinase a 64.3 13 0.00043 19.5 4.0 50 66-115 4-56 (65)
127 2dmj_A Poly (ADP-ribose) polym 63.8 2.3 7.8E-05 25.7 0.9 29 104-132 27-65 (106)
128 1jjd_A Metallothionein, SMTA; 63.6 5.2 0.00018 21.1 2.2 29 67-97 9-38 (55)
129 3hct_A TNF receptor-associated 63.2 4.6 0.00016 24.4 2.2 31 84-114 34-65 (118)
130 2vpb_A Hpygo1, pygopus homolog 62.6 3.5 0.00012 22.5 1.4 27 104-130 10-39 (65)
131 1jm7_B BARD1, BRCA1-associated 61.4 4.5 0.00015 24.4 2.0 43 66-113 23-66 (117)
132 1jm7_A BRCA1, breast cancer ty 61.1 7.5 0.00026 22.9 2.9 46 66-114 22-70 (112)
133 2kr4_A Ubiquitin conjugation f 61.1 7.1 0.00024 22.1 2.7 49 63-114 12-60 (85)
134 1z6u_A NP95-like ring finger p 59.4 10 0.00036 24.0 3.5 47 65-114 78-125 (150)
135 2gvi_A Conserved hypothetical 59.4 2.8 9.6E-05 28.3 0.8 30 66-97 173-202 (204)
136 2ysm_A Myeloid/lymphoid or mix 58.3 14 0.00049 22.0 3.9 30 38-67 7-38 (111)
137 4gne_A Histone-lysine N-methyl 57.1 22 0.00075 21.4 4.5 52 36-112 13-68 (107)
138 2yur_A Retinoblastoma-binding 56.9 9.9 0.00034 20.7 2.8 46 66-114 16-64 (74)
139 3l11_A E3 ubiquitin-protein li 56.4 5.7 0.0002 23.7 1.8 45 66-113 16-61 (115)
140 2egp_A Tripartite motif-contai 56.3 5 0.00017 22.0 1.4 11 104-114 55-65 (79)
141 3hcs_A TNF receptor-associated 56.2 6.7 0.00023 25.2 2.2 46 66-114 19-65 (170)
142 1uw0_A DNA ligase III; DNA rep 56.1 3.3 0.00011 25.4 0.7 14 104-117 17-30 (117)
143 1rmd_A RAG1; V(D)J recombinati 55.9 9.1 0.00031 22.8 2.7 46 66-114 24-70 (116)
144 1e4u_A Transcriptional repress 52.5 19 0.00065 20.0 3.5 29 86-114 33-62 (78)
145 2cs2_A Poly [ADP-ribose] polym 52.2 3.9 0.00013 25.8 0.5 13 104-116 29-41 (134)
146 4ic3_A E3 ubiquitin-protein li 51.4 15 0.00053 20.0 3.0 42 66-114 25-67 (74)
147 3ztg_A E3 ubiquitin-protein li 51.1 8.6 0.0003 21.8 1.9 45 66-113 14-61 (92)
148 1weo_A Cellulose synthase, cat 49.5 37 0.0013 19.8 5.7 53 36-112 14-68 (93)
149 2ko5_A Ring finger protein Z; 48.4 15 0.00053 21.6 2.6 33 82-114 41-73 (99)
150 3knv_A TNF receptor-associated 46.9 9 0.00031 24.1 1.6 45 66-113 32-77 (141)
151 2ecg_A Baculoviral IAP repeat- 45.5 18 0.00062 19.7 2.6 42 66-114 26-68 (75)
152 2xb1_A Pygopus homolog 2, B-ce 45.1 17 0.00059 21.6 2.6 27 104-130 5-34 (105)
153 3ttc_A HYPF, transcriptional r 44.7 3.3 0.00011 33.1 -0.9 36 36-76 15-50 (657)
154 3nw0_A Non-structural maintena 43.5 11 0.00039 25.9 1.9 27 88-114 201-229 (238)
155 3vth_A Hydrogenase maturation 43.2 5.3 0.00018 32.5 0.2 37 35-76 108-144 (761)
156 4av1_A Poly [ADP-ribose] polym 43.0 5.1 0.00017 27.5 0.0 35 34-68 35-80 (223)
157 2ysj_A Tripartite motif-contai 42.9 24 0.00081 18.2 2.8 31 66-99 21-51 (63)
158 2ecj_A Tripartite motif-contai 42.7 28 0.00097 17.4 3.0 14 85-98 32-45 (58)
159 1weu_A Inhibitor of growth fam 41.1 52 0.0018 19.1 4.8 33 33-67 31-68 (91)
160 2e5r_A Dystrobrevin alpha; ZZ 39.4 44 0.0015 17.8 3.6 30 66-97 12-44 (63)
161 2bay_A PRE-mRNA splicing facto 37.9 29 0.001 18.2 2.6 47 66-115 4-51 (61)
162 2c2l_A CHIP, carboxy terminus 36.8 24 0.00082 24.1 2.7 48 62-114 205-255 (281)
163 2jne_A Hypothetical protein YF 36.1 10 0.00034 22.6 0.5 10 39-48 33-42 (101)
164 2f42_A STIP1 homology and U-bo 34.9 55 0.0019 21.5 4.0 47 63-114 104-153 (179)
165 2vje_B MDM4 protein; proto-onc 34.2 52 0.0018 17.1 3.4 30 85-114 26-56 (63)
166 1twf_J DNA-directed RNA polyme 33.8 14 0.00047 20.5 0.8 14 38-51 4-17 (70)
167 2yrc_A Protein transport prote 33.7 45 0.0015 17.6 2.9 38 33-75 4-43 (59)
168 2epr_A POZ-, at HOOK-, and zin 33.2 17 0.00058 17.3 1.1 16 35-50 9-24 (48)
169 1znf_A 31ST zinc finger from X 32.1 15 0.0005 14.5 0.7 8 131-138 2-9 (27)
170 1ef4_A Subunit N, DNA-directed 31.8 12 0.00043 19.7 0.4 13 38-50 3-15 (55)
171 2ea5_A Cell growth regulator w 30.1 58 0.002 17.3 3.1 29 82-114 29-58 (68)
172 1ard_A Yeast transcription fac 29.1 18 0.00061 14.5 0.7 8 131-138 3-10 (29)
173 2lvu_A Zinc finger and BTB dom 34.9 12 0.00041 14.8 0.0 8 131-138 3-10 (26)
174 3j21_V 50S ribosomal protein L 27.4 36 0.0012 18.6 1.8 25 103-127 5-31 (66)
175 1paa_A Yeast transcription fac 27.3 20 0.00068 14.5 0.7 8 131-138 3-10 (30)
176 2m0e_A Zinc finger and BTB dom 27.1 23 0.00079 13.9 0.9 8 131-138 3-10 (29)
177 2kvh_A Zinc finger and BTB dom 26.9 14 0.00049 14.7 0.1 8 131-138 4-11 (27)
178 2d8s_A Cellular modulator of i 26.9 26 0.00089 19.6 1.2 28 104-131 17-49 (80)
179 2kfq_A FP1; protein, de novo p 26.7 22 0.00075 15.0 0.8 8 131-138 3-10 (32)
180 4ayb_N DNA-directed RNA polyme 26.5 18 0.00061 19.8 0.5 14 38-51 4-17 (66)
181 1gnf_A Transcription factor GA 25.4 54 0.0019 16.4 2.2 12 85-96 22-33 (46)
182 1klr_A Zinc finger Y-chromosom 25.4 24 0.00083 14.0 0.8 8 131-138 3-10 (30)
183 2jrp_A Putative cytoplasmic pr 25.1 17 0.0006 20.7 0.3 12 104-115 53-64 (81)
184 1wen_A Inhibitor of growth fam 25.0 91 0.0031 16.9 3.4 32 34-67 12-48 (71)
185 2cot_A Zinc finger protein 435 25.0 40 0.0014 17.7 1.8 41 34-75 14-56 (77)
186 1vq8_U 50S ribosomal protein L 24.7 37 0.0013 18.5 1.5 25 103-127 4-30 (66)
187 2yho_A E3 ubiquitin-protein li 24.5 72 0.0025 17.5 2.9 42 66-114 19-61 (79)
188 3h0g_L DNA-directed RNA polyme 24.5 79 0.0027 17.0 2.8 30 36-75 19-48 (63)
189 2ee8_A Protein ODD-skipped-rel 24.0 35 0.0012 19.2 1.5 42 34-76 13-56 (106)
190 2vje_A E3 ubiquitin-protein li 23.6 87 0.003 16.2 3.6 29 86-114 28-57 (64)
191 2xzf_A Formamidopyrimidine-DNA 23.4 55 0.0019 22.9 2.7 27 104-138 244-270 (271)
192 1p7a_A BF3, BKLF, kruppel-like 23.2 29 0.00099 15.0 0.8 8 131-138 12-19 (37)
193 1x4w_A Hypothetical protein FL 23.1 73 0.0025 17.4 2.5 14 36-49 13-26 (67)
194 2m0f_A Zinc finger and BTB dom 22.8 24 0.00083 13.9 0.5 8 131-138 3-10 (29)
195 2kvf_A Zinc finger and BTB dom 22.1 26 0.0009 13.8 0.5 8 131-138 4-11 (28)
196 3gj5_B Nuclear pore complex pr 21.9 9.7 0.00033 17.9 -1.0 21 91-111 10-30 (34)
197 2lbz_A Thuricin17, thurincin H 21.9 39 0.0014 14.8 1.0 12 64-75 6-17 (31)
198 1rim_A E6APC2 peptide; E6-bind 21.6 33 0.0011 14.6 0.8 8 131-138 3-10 (33)
199 2lvr_A Zinc finger and BTB dom 27.0 20 0.00067 14.4 0.0 8 131-138 4-11 (30)
200 2m0d_A Zinc finger and BTB dom 21.3 28 0.00095 13.8 0.5 8 131-138 4-11 (30)
201 2lo3_A SAGA-associated factor 21.3 21 0.0007 17.7 0.0 11 104-114 19-29 (44)
202 4hc9_A Trans-acting T-cell-spe 21.2 1.5E+02 0.005 17.9 3.9 11 104-114 61-71 (115)
203 1rik_A E6APC1 peptide; E6-bind 21.0 28 0.00094 13.8 0.5 8 131-138 3-10 (29)
204 2lvt_A Zinc finger and BTB dom 26.5 20 0.0007 14.4 0.0 8 131-138 3-10 (29)
205 2vut_I AREA, nitrogen regulato 20.7 90 0.0031 15.3 2.8 14 83-96 17-30 (43)
206 1bor_A Transcription factor PM 20.5 41 0.0014 17.0 1.2 43 66-114 7-49 (56)
No 1
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.95 E-value=9.8e-29 Score=153.52 Aligned_cols=97 Identities=28% Similarity=0.576 Sum_probs=89.3
Q ss_pred CCCccccccccccc-ceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCC
Q psy284 37 GPQECAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAF 115 (139)
Q Consensus 37 ~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 115 (139)
..++|..|+++|.. .+++.++++.||.+||+|..|+.+| .+..|+.+++++||..||.++|++ +|..|+++|.+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~ 79 (101)
T 2cup_A 4 GSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL--ANETFVAKDNKILCNKCTTREDSP--KCKGCFKAIVAG 79 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT--TSSCCEEETTEEECHHHHTTCCCC--BCSSSCCBCCSS
T ss_pred CCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCC--CcCeeECcCCEEEChhHhhhhcCC--ccccCCCccccC
Confidence 46799999999984 6678999999999999999999999 456789999999999999999999 999999999966
Q ss_pred ceEEEeCCccccccccccccCC
Q psy284 116 EMVMRARNNVYHLECFACQQCN 137 (139)
Q Consensus 116 ~~~~~~~~~~~H~~Cf~C~~C~ 137 (139)
|.+|.++++.||++||+|..|+
T Consensus 80 ~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 80 DQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SCEEESSSCEEETTTCCCTTCC
T ss_pred CeEEEeCCcchHHhCCCCCCCC
Confidence 6899999999999999999995
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.95 E-value=5.2e-28 Score=156.76 Aligned_cols=101 Identities=58% Similarity=1.258 Sum_probs=92.6
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCCce
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEM 117 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~ 117 (139)
.++|..|+++|.+.+++.++++.||++||+|..|+.+|++.+..|+.+++++||..||.++|++.++|..|+++|.+.|.
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~ 81 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEM 81 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSE
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccce
Confidence 46899999999998778999999999999999999999633467999999999999999999876689999999998778
Q ss_pred EEEeCCccccccccccccCCC
Q psy284 118 VMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 118 ~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|.+.++.||++||+|..|++
T Consensus 82 ~~~a~~~~~H~~CF~C~~C~~ 102 (131)
T 2xjy_A 82 TMRVKDKVYHLECFKCAACQK 102 (131)
T ss_dssp EEEETTEEEEGGGCBCTTTCC
T ss_pred eEeeCCceECccCcccCCCCC
Confidence 999999999999999999986
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=153.80 Aligned_cols=98 Identities=27% Similarity=0.524 Sum_probs=91.1
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCCce
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEM 117 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~ 117 (139)
.++|.+|+++|.+.+++.++++.||++||+|..|+.+| .+..|+.+++++||..||.++|++ +|..|+++|.+.+.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~~ 78 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSIL--AGEIYVMVNDKPVCKPCYVKNHAV--VCQGCHNAIDPEVQ 78 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBC--TTSEEEEETTEEEEHHHHHHHSCC--BCTTTCSBCCTTSC
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCC--CcCEEEeECCEEechHHhCcCcCc--cCcccCCcCCcCce
Confidence 46899999999987778999999999999999999999 456899999999999999999999 99999999998678
Q ss_pred EEEeCCcccc--ccccccccCCCC
Q psy284 118 VMRARNNVYH--LECFACQQCNHR 139 (139)
Q Consensus 118 ~~~~~~~~~H--~~Cf~C~~C~~~ 139 (139)
+|.++++.|| ++||+|..|+++
T Consensus 79 ~~~a~~~~~H~~~~CF~C~~C~~~ 102 (126)
T 2xqn_T 79 RVTYNNFSWHASTECFLCSCCSKC 102 (126)
T ss_dssp EEEETTEEEESSTTTSBCTTTCCB
T ss_pred EEECCCCEeeCCCCCcCcCCCCCc
Confidence 9999999999 999999999863
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.94 E-value=5e-27 Score=160.73 Aligned_cols=101 Identities=56% Similarity=1.265 Sum_probs=92.1
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCCce
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFEM 117 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~ 117 (139)
.++|..|+++|.+.+++.++++.||++||+|..|+..|...+..|+.+++++||..||.++|+++++|..|+++|.+.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~ 84 (188)
T 1rut_X 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASEL 84 (188)
T ss_dssp CCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSE
T ss_pred CCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcE
Confidence 56899999999998778999999999999999999999532467999999999999999999985569999999998778
Q ss_pred EEEeCCccccccccccccCCC
Q psy284 118 VMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 118 ~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|.+.++.||++||+|..|++
T Consensus 85 ~i~a~~~~~H~~CF~C~~C~~ 105 (188)
T 1rut_X 85 VMRAQGNVYHLKCFTCSTCRN 105 (188)
T ss_dssp EEEETTEEECGGGCBCTTTCC
T ss_pred EEEcCCCEEeCCCCeECCCCC
Confidence 999999999999999999976
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.93 E-value=1.3e-26 Score=156.20 Aligned_cols=97 Identities=46% Similarity=1.006 Sum_probs=87.9
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCCc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFE 116 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~ 116 (139)
+.++|..|+++|.+.+++.++++.||.+||+|..|+..|. +.. +.+++++||..||.++|++ +|..|+++|.+.+
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~-f~~~g~~yC~~~y~~~f~~--~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLA--ERC-FSRGESVYCKDDFFKRFGT--KCAACQLGIPPTQ 79 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCC--SCC-EESSSCEECHHHHHHHHSC--BCTTTCCBCCTTS
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCC--CCC-cccCCeeeecccccccccc--cccccccccCCCc
Confidence 4579999999999987788999999999999999999995 333 5899999999999999999 9999999999877
Q ss_pred eEEEeCCccccccccccccCCC
Q psy284 117 MVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 117 ~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
.++.++++.||++||+|..|++
T Consensus 80 ~v~~a~~~~~H~~CF~C~~C~~ 101 (169)
T 2rgt_A 80 VVRRAQDFVYHLHCFACVVCKR 101 (169)
T ss_dssp EEEEETTEEEEGGGCBCTTTCC
T ss_pred EEEEcCCceEeeCCCcCCCCCC
Confidence 7889999999999999999986
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.93 E-value=4.3e-26 Score=155.35 Aligned_cols=100 Identities=45% Similarity=0.982 Sum_probs=90.6
Q ss_pred CCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 35 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
....++|..|+++|.+.+++.++++.||++||+|..|+.+|. +.. +.+++++||..||.++|++ +|..|+++|.+
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~-f~~~g~~yC~~~y~~~f~~--kC~~C~~~I~~ 131 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLA--ERC-FSRGESVYCKDDFFKRFGT--KCAACQLGIPP 131 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCS--SCC-EEETTEEECHHHHHHTTSC--CCTTTCCCCCS
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccC--CCc-eeECCEeeecCcccccccc--ccccCCCccCC
Confidence 455789999999999987788999999999999999999995 333 5799999999999999999 99999999998
Q ss_pred CceEEEeCCccccccccccccCCCC
Q psy284 115 FEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 115 ~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
.+.++.+.++.||++||+|..|+++
T Consensus 132 ~~~v~~a~~~~~H~~CF~C~~C~~~ 156 (182)
T 2jtn_A 132 TQVVRRAQDFVYHLHCFACVVCKRQ 156 (182)
T ss_dssp SCCCCEETTEECCTTTCCCTTTCCC
T ss_pred CceEEecCCCCEEeCCCcCCCCCCC
Confidence 7778899999999999999999863
No 7
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.91 E-value=1.1e-24 Score=149.59 Aligned_cols=101 Identities=23% Similarity=0.540 Sum_probs=87.7
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCC-------------
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGST------------- 102 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~------------- 102 (139)
.+.++|..|+++|.+.+.+.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++.
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~ 82 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLD--STTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLST 82 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCC--SSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCC--CCeeEecCCEeeChhhhHhhcCccccccccccccEec
Confidence 34679999999998766788999999999999999999995 456899999999999999999872
Q ss_pred ---------------------------------ccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 103 ---------------------------------GYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 103 ---------------------------------~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
.+|.+|+++|.+. ..|.++++.||++||+|..|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~ 151 (192)
T 1b8t_A 83 DKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAA-EKVIGAGKSWHKSCFRCAKCGKS 151 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSS-SCEEETTEEECTTTCBCTTTCCB
T ss_pred CCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCc-EEEecCCCccchhcCCccccCCC
Confidence 1388999999864 45679999999999999999863
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=6.1e-20 Score=117.37 Aligned_cols=85 Identities=44% Similarity=0.944 Sum_probs=73.2
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCCc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFE 116 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~ 116 (139)
..++|..|+++|.+.+++.++++.||++||+|..|+.+|.+.+..|+.+++++||..||.++|+++++|..|+++|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~-- 81 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG-- 81 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC--
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc--
Confidence 357899999999998778899999999999999999999522356899999999999999999988899999999987
Q ss_pred eEEEeCC
Q psy284 117 MVMRARN 123 (139)
Q Consensus 117 ~~~~~~~ 123 (139)
..+.+.+
T Consensus 82 ~~~~~~g 88 (122)
T 1m3v_A 82 GDVMVVG 88 (122)
T ss_dssp EESSSSS
T ss_pred hheEEcC
Confidence 3334444
No 9
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=4e-18 Score=101.22 Aligned_cols=72 Identities=38% Similarity=0.742 Sum_probs=63.2
Q ss_pred CCCCCCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 31 VPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 31 ~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
.+....+.++|..|+++|.+.+.+.++++.||++||+|..|+..|. + .|+.+++++||+.||.++|++ +|.+
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~--~-~~~~~~g~~yC~~~y~~~fg~--~C~~ 79 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT--G-EYISKDGVPYCESDYHAQFGS--GPSS 79 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS--S-CCEEETTEEECTTHHHHHTTC--CSTT
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC--C-CeEEECCEEECHHHHHHHcCC--CCCC
Confidence 3455567889999999999776789999999999999999999994 3 589999999999999999999 8864
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5e-18 Score=99.83 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=64.3
Q ss_pred CcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccH-hhHHHHhCCCccccccCCCCCC
Q psy284 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK-RDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 39 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~-~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
++|..|+++|.+.+.+.++++.||.+||+|..|+.+|. +..|+.+++++||. .||.++|++ +|.+|++.+..
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~~--~C~~C~~~~~~ 73 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLT--SGGHAEHEGKPYCNHPCYSAMFGP--KGFGRGGAESH 73 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCC--TTTEEEETTEEEETTTHHHHHSSC--CCSSCCCSSSC
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCC--CCceECcCCeEeeCHHHHHHHhCc--cCCCcCCceee
Confidence 47999999999766788999999999999999999995 44689999999999 699999999 99999987653
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.71 E-value=5e-18 Score=101.01 Aligned_cols=72 Identities=19% Similarity=0.427 Sum_probs=55.3
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCC
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVI 112 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I 112 (139)
+.++|..|+++|.+.+.+.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++ +|.+|++..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~gcg~g~ 77 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLD--STTVAIHDAEVYCKSCYGKKYGP--KGYGYGQGA 77 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEEC--SSCCEEETTEEECSHHHHHHCC------------
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCC--CCCeEeeCCEEECHHHHHHHhCC--cccccCCcc
Confidence 4678999999998766789999999999999999999994 45688999999999999999999 999999754
No 12
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=2e-17 Score=104.49 Aligned_cols=70 Identities=57% Similarity=1.091 Sum_probs=62.3
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccC
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACS 109 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~ 109 (139)
.++|.+|+++|.+.+++.++++.||++||+|..|+.+|.+.+..|+.+++++||..||.++|++ +|..|.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~--~c~~c~ 72 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS--GGHMGS 72 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS--CCSSCB
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc--ccCcCC
Confidence 5689999999999878899999999999999999999953235789999999999999999999 876664
No 13
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=6.1e-17 Score=97.92 Aligned_cols=68 Identities=24% Similarity=0.455 Sum_probs=59.8
Q ss_pred CCCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCcccc
Q psy284 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCA 106 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~ 106 (139)
......+|..|++.|.+. .+.++++.||.+||+|..|+..|. +..|+.+++++||..||.++|++ ++.
T Consensus 21 ~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~p--~~~ 88 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLK--QKGYFFVEGELYCETHARARTSG--PSS 88 (89)
T ss_dssp CCCSCCBCTTTCCBCCSC-CEESSSCEECTTTCCCSSSCCCTT--TSCCEEETTEEECHHHHHHHSSS--CCC
T ss_pred CCCcCCCcccCCCEeccc-EEEECCceECccCCEecCCCCCCC--CCCeEeECCEEECHHHHHHHhCC--CCC
Confidence 445678999999999985 688999999999999999999994 45688999999999999999998 664
No 14
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=4.9e-17 Score=95.54 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=60.4
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccH-hhHHHHhCCCccccc
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCK-RDYLRLFGSTGYCAA 107 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~-~cy~~~~~~~~~C~~ 107 (139)
...++|..|+++|.+.+.+.++++.||++||+|..|+.+|. +..|+.+++++||. .||.++|++ +|.+
T Consensus 7 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~~--kc~g 75 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLT--PGGHAEHDGKPFCHKPCYATLFGS--GPSS 75 (76)
T ss_dssp CCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCC--TTSCEEETTEEECTTTHHHHHSCS--SCSC
T ss_pred CCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccC--CCceEeECCEEecchHHHHHhccc--ccCC
Confidence 34679999999999766788999999999999999999994 45689999999999 799999999 8863
No 15
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=8.3e-17 Score=97.71 Aligned_cols=71 Identities=25% Similarity=0.434 Sum_probs=62.1
Q ss_pred CCCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCcccccc
Q psy284 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAAC 108 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C 108 (139)
......+|..|++.|.+.+.+.++++.||.+||+|..|+..|. +..|+.+++++||..||.++|++ +|.-+
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~--kc~~~ 81 (91)
T 2d8y_A 11 QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLS--LGTYASLHGRIYCKPHFNQLFKS--KGNYD 81 (91)
T ss_dssp CSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCC--TTTCCCSSSCCCCHHHHHHHSCC--CSCCC
T ss_pred CCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCC--CCCcEeECCEEECHHHHHHHhCC--CcCcc
Confidence 3456789999999999866788999999999999999999995 34588999999999999999999 88733
No 16
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.1e-16 Score=96.99 Aligned_cols=68 Identities=22% Similarity=0.481 Sum_probs=59.9
Q ss_pred CCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 35 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
....++|..|+++|.+. .+.++++.||++||+|..|+..|. +..|+.+++++||..||.++|++ +|..
T Consensus 22 ~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTMA--YIGFVEEKGALYCELCYEKFFAS--GPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBCCSC-EEEETTEEECTTTCBCSSSCCBCS--SSCBEESSSCEECHHHHHHHTSC--CCCC
T ss_pred CCCCCCCccCCCEecce-EEEECCccccccCCccCCCCCCCC--CCEeEeECCEEECHHHHHHHcCC--CCCC
Confidence 34577999999999765 678999999999999999999994 45688999999999999999999 8863
No 17
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1e-16 Score=92.41 Aligned_cols=66 Identities=26% Similarity=0.569 Sum_probs=59.5
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
..++|..|+++|.+. .+.++++.||.+||+|..|+.+|. +..|+.+++++||..||.++|++ +|.+
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~g 69 (69)
T 2cur_A 4 GSSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFVSG--PSSG 69 (69)
T ss_dssp CCCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCBCT--TSCEEECSSCEEEHHHHHHHHTC--SCCC
T ss_pred CcCCCcccCCEeCcc-eEEECccccccCcCEECCCCCCCC--CCccEeECCEEECHHHhHHHhcC--CCCC
Confidence 457999999999876 588999999999999999999994 56799999999999999999999 8864
No 18
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.4e-17 Score=96.06 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=59.0
Q ss_pred CCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCcccc
Q psy284 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCA 106 (139)
Q Consensus 35 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~ 106 (139)
....++|..|++.|.+. .+.++++.||.+||+|..|+..|. +..|+.+++++||..||.++|++ ++.
T Consensus 12 ~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~p--~g~ 78 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLK--QKGHFFVEDQIYCEKHARERVSG--PSS 78 (79)
T ss_dssp CCCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHH--HHCCEESSSCEECHHHHHHHHSS--CCC
T ss_pred CCCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCC--CCCeEeECCEEECHHHHHHHhCC--CCC
Confidence 35578999999999986 688999999999999999999994 35688999999999999999998 643
No 19
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=4.3e-17 Score=95.78 Aligned_cols=68 Identities=26% Similarity=0.589 Sum_probs=61.4
Q ss_pred CCccccccccccc---ceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccC
Q psy284 38 PQECAGCGKHITD---RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACS 109 (139)
Q Consensus 38 ~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~ 109 (139)
.++|..|+++|.+ .+.+.++++.||++||+|..|+.+| .+..|+.+++++||..||.++|++ +|..++
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~cy~~~f~~--~C~~~s 75 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL--VGKGFLTQNKEIFCQKCGSGMDTD--ISGPSS 75 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBC--SSSCEEEETTEEEETTTTCCCCCC--SSSSSC
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcC--CCCceEeECCEEECHHHhhhhhCC--cCCCCC
Confidence 5689999999995 3578999999999999999999999 456799999999999999999999 998875
No 20
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.2e-16 Score=91.69 Aligned_cols=67 Identities=25% Similarity=0.549 Sum_probs=59.5
Q ss_pred CCCcccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 37 GPQECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
..++|..|+++|.+. +++.++++.||.+||+|..|+.+|. +..|+.+++++||..||.++|++ +|.+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLG--SRSFVPDKGAHYCVPCYENKFAS--GPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTT--TSCEEEETTEEEEHHHHHHHTSC--CCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCC--CCccCCcCCeEECHHHHHHHccC--cCCC
Confidence 356899999999974 6788999999999999999999994 45689999999999999999999 8863
No 21
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=99.90 Aligned_cols=67 Identities=54% Similarity=1.217 Sum_probs=58.9
Q ss_pred CCCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhC
Q psy284 34 NAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~ 100 (139)
.....++|.+|+++|.+.+++.++++.||.+||+|..|+..|.+.+..|+.+++++||+.||.++||
T Consensus 57 ~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 57 GGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp SCSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred cCccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3455689999999999987789999999999999999999995334578999999999999999885
No 22
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.3e-16 Score=91.19 Aligned_cols=66 Identities=24% Similarity=0.587 Sum_probs=59.0
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
..++|..|+++|.+. .+.++++.||++||+|..|+.+| .+..|+.+++++||..||.++|++ +|.+
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~~--~c~~ 69 (70)
T 2d8z_A 4 GSSGCVQCKKPITTG-GVTYREQPWHKECFVCTACRKQL--SGQRFTARDDFAYCLNCFCDLYAS--GPSS 69 (70)
T ss_dssp CCCBCSSSCCBCCSS-EEESSSSEEETTTSBCSSSCCBC--TTSCCEESSSSEECHHHHHHHTCC--CCTT
T ss_pred CCCCCcccCCeeccc-eEEECccccCCCCCccCCCCCcC--CcCceEeeCCeEECHHHHHHHhcc--ccCC
Confidence 456899999999976 48899999999999999999999 456788999999999999999999 8863
No 23
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.3e-16 Score=91.66 Aligned_cols=66 Identities=24% Similarity=0.475 Sum_probs=59.2
Q ss_pred CCcccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 38 PQECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 38 ~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
.++|..|+++|.+. .++.++++.||.+||+|..|+..|. +..|+.+++++||..||.++|++ +|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~~ 71 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIG--TKSFIPKDNQNFCVPCYEKQHAS--GPSS 71 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCC--SSSEEEETTEEEEHHHHHHHTSS--CCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccC--CCccCccCCeEECHHHHhHHhCC--CCCC
Confidence 46899999999985 5788999999999999999999994 45789999999999999999999 8863
No 24
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=7.9e-17 Score=96.00 Aligned_cols=71 Identities=18% Similarity=0.350 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeE--eeCCccccHhhHHHHhCC
Q psy284 29 KAVPNNAQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY--TKANLILCKRDYLRLFGS 101 (139)
Q Consensus 29 ~~~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~--~~~~~~~C~~cy~~~~~~ 101 (139)
+..+....+..+|.+|++.|++.+.+.++++.||.+||+|..|+..|. ...|+ .+++++||+.||.++|+.
T Consensus 6 ~~~~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~--~~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 6 SGQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLW--PGGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp CCCCCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCC--TTSEECCTTTCCCEETTTCCCCCCC
T ss_pred CCCCcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcC--CCceeEeCcCCEEEChHHHHhhhcC
Confidence 344455567789999999999876788999999999999999999995 34455 479999999999988765
No 25
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.2e-16 Score=92.89 Aligned_cols=67 Identities=18% Similarity=0.447 Sum_probs=57.5
Q ss_pred CCCCccccccccccc-ceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCcccc
Q psy284 36 QGPQECAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCA 106 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~ 106 (139)
....+|.+|+++|.+ ..++.++++.||.+||+|..|+.+|. +..|+.+++++||..||.++|++ +|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~--~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLFAP--CWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCG--GGCSEEETTEEECHHHHHHHCCC--C--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCC--CCCeEeECCeEeCHHHHHHHhhc--ccC
Confidence 346799999999986 44578999999999999999999995 34689999999999999999999 885
No 26
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.6e-16 Score=90.86 Aligned_cols=63 Identities=32% Similarity=0.668 Sum_probs=56.7
Q ss_pred CCCccccccccccc---ceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 37 GPQECAGCGKHITD---RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 37 ~~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
..++|..|+++|.+ ..++.++++.||++||+|..|+..| .+..|+.+++++||..||.++|+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL--VGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBC--TTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcC--CCCccEeECCEEEChhHcCcccCC
Confidence 46799999999996 3578889999999999999999999 456788899999999999999988
No 27
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.62 E-value=4.2e-16 Score=89.06 Aligned_cols=61 Identities=28% Similarity=0.698 Sum_probs=55.5
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
.++|.+|+++|.+. .+.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++
T Consensus 5 ~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 5 VPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCS--SSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCcccCCEecce-EEEECccccccCcCEECCCCCCCC--CCceEeECCcEECHHHHHHHhCC
Confidence 56899999999954 688999999999999999999994 56789999999999999999987
No 28
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=9.8e-16 Score=90.73 Aligned_cols=65 Identities=25% Similarity=0.653 Sum_probs=58.6
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
.++|..|+++|.+. .+.++++.||++||+|..|+.+|. +..++.+++++||..||.++|++ +|.+
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~~y~~~f~~--~C~~ 79 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFS--TGSFFELDGRPFCELHYHHRRGS--GPSS 79 (80)
T ss_dssp SCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSC--SSCCEESSSCEECHHHHHHHHSS--SCCC
T ss_pred CCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCC--CCcEEeECCEEECHHHHHHHcCC--CCCC
Confidence 56899999999985 688999999999999999999994 45688999999999999999999 8864
No 29
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.60 E-value=1.1e-15 Score=104.56 Aligned_cols=73 Identities=26% Similarity=0.537 Sum_probs=66.0
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCC
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVI 112 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I 112 (139)
.+.++|..|+++|.+.+.+.++++.||.+||+|..|+..|. +..|+.+++++||+.||.++|++ +|.+|+++|
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~f~~--kc~~C~~~~ 185 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLE--STTLADKDGEIYCKGCYAKNFGP--KGFGFGQGA 185 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCC--SSSEEEETTEEEEHHHHHHHTCC--CCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCC--CCcccccCCEEeCHHHHHHhcCC--cCCCCCCcc
Confidence 34678999999999866788999999999999999999994 45689999999999999999999 999999986
No 30
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=2e-15 Score=87.24 Aligned_cols=63 Identities=30% Similarity=0.651 Sum_probs=56.2
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
.+..+|..|+++|.+. .+.++++.||++||+|..|+..|. +..|+.+++++||..||.++|++
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLA--DIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCS--SSCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCC--CCccEeECCeEECHHHhhhhcCC
Confidence 3467999999999975 688999999999999999999995 44688899999999999999987
No 31
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.6e-15 Score=88.01 Aligned_cols=62 Identities=27% Similarity=0.674 Sum_probs=55.8
Q ss_pred CCCcccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhC
Q psy284 37 GPQECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~ 100 (139)
..++|.+|+++|.+. ..+.++++.||.+||+|..|+..| .+..|+.+++++||..||.++|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL--RGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC--TTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcC--CcCcCEeeCCeEECHHHHHHHHc
Confidence 467999999999974 578899999999999999999999 45679999999999999999986
No 32
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.8e-15 Score=89.62 Aligned_cols=66 Identities=27% Similarity=0.523 Sum_probs=59.1
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
..++|..|+++|.+. .+.++++.||.+||+|..|+.+| .+..|+.+++++||..||.++|++ +|..
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~~--~c~s 79 (80)
T 2cuq_A 14 FAPRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPL--AGQQFTSRDEDPYCVACFGELFAS--GPSS 79 (80)
T ss_dssp SSCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBC--TTCCEEECSSSEEEHHHHHHHTTC--STTC
T ss_pred cCCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcC--CCCeeEeECCEEECHHHHHHHcCC--CCCC
Confidence 357899999999886 68899999999999999999999 456789999999999999999999 8853
No 33
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.9e-15 Score=89.75 Aligned_cols=66 Identities=30% Similarity=0.631 Sum_probs=57.8
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEee-CCccccHhhHHHHhCCCccccc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTK-ANLILCKRDYLRLFGSTGYCAA 107 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~~~C~~cy~~~~~~~~~C~~ 107 (139)
..++|..|+++|.+. ++.++++.||++||+|..|+.+|. +..|+.. ++++||..||.++|++ +|.+
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~g~~yC~~cy~~~f~~--~C~~ 80 (81)
T 2dlo_A 14 TLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLD--GIPFTVDATSQIHCIEDFHRKFAS--GPSS 80 (81)
T ss_dssp SCCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCT--TSCEECCTTCCCEEHHHHHHHTTS--SSCC
T ss_pred CCCccccCCCeecce-eEEECCccccHHhcCcccCCCccC--CCeeEECCCCEEECHHHHHHHhcC--cCCC
Confidence 467999999999975 789999999999999999999994 4556665 7899999999999999 8864
No 34
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-16 Score=91.62 Aligned_cols=65 Identities=26% Similarity=0.475 Sum_probs=58.1
Q ss_pred CCccccccccccc-ceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCcccc
Q psy284 38 PQECAGCGKHITD-RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCA 106 (139)
Q Consensus 38 ~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~ 106 (139)
.++|..|+++|.+ ..++.++++.||++||+|..|+.+|. +..|+.+++++||..||.++|++ +|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~~C~~c~~~~~~~--~C~ 80 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLA--DEPFTCQDSELLCNDCYCSAFSS--GPS 80 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCS--SCCEEEETTEEEETTTSSCCGGG--SSC
T ss_pred CCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccC--CCccEeeCCEEECHHHHhhhcCC--CCC
Confidence 5689999999994 55688899999999999999999994 56789999999999999999998 875
No 35
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=5.1e-15 Score=87.48 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=54.7
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
...++|..|+++|.+. .+.++++.||++||+|..|+.+|. +. ++.+++++||..||.++|++
T Consensus 13 ~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~--~~-~f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELT--AD-ARELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCCSC-CCCCSSSCCCTTTSBCSSSCCBCC--TT-CEEETTEEECHHHHHTTSCC
T ss_pred cCCCCCccCCCEecce-EEEECcceeCCCCCEeCCCCCccC--CC-CEeECCEEeCHHHHHHhCCC
Confidence 4467999999999965 588999999999999999999995 34 45999999999999999988
No 36
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=5.5e-15 Score=87.84 Aligned_cols=66 Identities=24% Similarity=0.512 Sum_probs=57.8
Q ss_pred CCCcccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCcccc
Q psy284 37 GPQECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCA 106 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~ 106 (139)
..++|..|+++|.+. .++.++++.||++||+|..|+..|. +..++.+++++||..||.++|++ +|.
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIG--TGSFFPKGEDFYCVTCHETKFAS--GPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCT--TSCEEEETTEEEEHHHHHHHTSC--CCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccC--CCccEeeCCEEECHHHHHHHhCC--CCC
Confidence 357999999999964 3588999999999999999999994 45789999999999999999998 653
No 37
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.55 E-value=1e-14 Score=93.14 Aligned_cols=75 Identities=21% Similarity=0.422 Sum_probs=65.4
Q ss_pred Ccccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCCc
Q psy284 39 QECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAFE 116 (139)
Q Consensus 39 ~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~ 116 (139)
++|..|++.|... .++.++++.||..||+|..|++.|. .+..|+.+++++||..||.++|++ +|..++..+.+.+
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~-~g~~f~~~~g~~yC~~cy~~~~~~--~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFS-VGDRYLLINSDIVCEQDIYEWTKI--NGGSGGSGGSGGD 84 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCC-TTCEEEECSSSEEEGGGHHHHHHH--HTCCCCCCSCCSC
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCC-CCCcEEeeCCEEEcHHHhHHHhcc--ccCCCCCCCccCC
Confidence 4899999999973 4678899999999999999999995 345789999999999999999998 9999988876543
No 38
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5e-16 Score=92.45 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=47.7
Q ss_pred CCccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
++++||+.||.++|++ +|.+|+++|.+.+.+|.++++.||++||+|+.|+++
T Consensus 1 ~g~~yC~~~y~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 52 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN--TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRS 52 (82)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCB
T ss_pred CCceechhHhCcccCC--cCccCCCccccCcEEEEeCCccccccCCeecCCCCc
Confidence 4789999999999999 999999999965689999999999999999999863
No 39
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-15 Score=89.70 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=46.9
Q ss_pred CccccHhhHHHHhCCCccccccCCCCCC---CceEEEeCCccccccccccccCCCC
Q psy284 87 NLILCKRDYLRLFGSTGYCAACSKVIPA---FEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 87 ~~~~C~~cy~~~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+++||+.||.++|++ +|.+|+++|.+ .+.+|.++++.||++||+|..|+++
T Consensus 2 ~~~yC~~cy~~~~~~--~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~ 55 (77)
T 2egq_A 2 SSGSSGDCYKNFVAK--KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVN 55 (77)
T ss_dssp CSSCCTTCCCSCCCC--CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCB
T ss_pred CCeEchhHhchhhCc--cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCC
Confidence 679999999999998 99999999996 4589999999999999999999863
No 40
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.53 E-value=8.8e-15 Score=84.72 Aligned_cols=63 Identities=19% Similarity=0.487 Sum_probs=54.8
Q ss_pred CCCCcccccccccccce-eeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhC
Q psy284 36 QGPQECAGCGKHITDRF-LLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG 100 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~ 100 (139)
....+|..|+++|.+.+ ++.++++.||++||+|..|+.+|. +..++.+++++||..||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCG--GGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCC--CCCeEeECCeEeCHHHHHHhhC
Confidence 34669999999999754 467999999999999999999995 3468899999999999999885
No 41
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.5e-14 Score=85.84 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=56.4
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeE-eeCCccccHhhHHHHhCCCcccc
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLY-TKANLILCKRDYLRLFGSTGYCA 106 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~~C~~cy~~~~~~~~~C~ 106 (139)
..++|..|+++|.+. .+.++++.||++||+|..|+..|. .+..|+ .+++++||..||.++|++ .|.
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~-~g~~f~~~~~~~~~C~~c~~~~~~~--~~s 80 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIE-DGDAYALVQHATLYCGKCHNEVVSG--PSS 80 (81)
T ss_dssp SSCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCC-TTSCEEECSSSCEEEHHHHHHHHCT--TSC
T ss_pred cCCcCccCCCCcCce-EEEECCceeccccCCccCCCCccC-CCCcEEEeeCCEEECHHHHHHHhcC--CCC
Confidence 356899999999954 688999999999999999999995 235566 589999999999999988 654
No 42
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=2.2e-15 Score=89.58 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=47.2
Q ss_pred CccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 87 ~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+.+||+.||.+++++ +|.+|+++|.+.+.+|.++++.||++||+|..|+++
T Consensus 2 ~~~yC~~cy~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 52 (82)
T 1x63_A 2 SSGSSGKCTTREDSP--KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQV 52 (82)
T ss_dssp CSCCCCCCCSCCCSC--BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCC
T ss_pred CCcCchhHHccccCC--cCccCCcccccCceEEEECccccccccCchhhCCCc
Confidence 578999999999998 999999999976789999999999999999999863
No 43
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.8e-14 Score=83.87 Aligned_cols=63 Identities=25% Similarity=0.438 Sum_probs=55.4
Q ss_pred CCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 37 GPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 37 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
..++|..|+++|.+. .+.++++.||++||+|..|+.+|. .+..|+.+++++||..||.+++..
T Consensus 4 ~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~-~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 4 GSSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFA-EGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp SCCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCC-SSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCC-CCCeeEeeCCEEEChHHChHhhcc
Confidence 356899999999985 688999999999999999999995 256789999999999999987764
No 44
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=9.6e-15 Score=86.65 Aligned_cols=49 Identities=33% Similarity=0.705 Sum_probs=45.1
Q ss_pred CccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 87 ~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
..+||..||.++|++ +|..|+++|.+ .+|.++++.||++||+|..|+++
T Consensus 2 ~~~yC~~dy~~~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~ 50 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGT--RCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLP 50 (81)
T ss_dssp CCCCCCSCGGGSCCC--BCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCC
T ss_pred CCCcchHHHHhHhCC--cCccccCEecc--ceEEECCceeCccCCccccCCCC
Confidence 358999999999999 99999999985 68999999999999999999864
No 45
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=5.6e-15 Score=87.41 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=45.8
Q ss_pred CCccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
++++||+.||.+++++ +|..|+++|.+ ..|.++++.||++||+|..|+++
T Consensus 1 gg~~yC~~cy~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~ 50 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP--RCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTP 50 (80)
T ss_dssp CCCCSCCCCCCCCSSC--CCTTTCCCCCS--CCEESSSSEECTTTCBCSSSCCB
T ss_pred CCcEEcHHHHccccCC--cCCCCCCEecC--cEEEECCchhhhhhCCcccCCCc
Confidence 4789999999999998 99999999987 57899999999999999999863
No 46
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=6.2e-15 Score=87.24 Aligned_cols=50 Identities=26% Similarity=0.654 Sum_probs=45.8
Q ss_pred CCccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
++++||+.||.++|++ +|.+|+++|.+ .+|.++++.||++||+|..|+++
T Consensus 1 gg~~yC~~~y~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~ 50 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP--KCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTS 50 (80)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCS--SCEEETTEEECTTTCBCSSSCCB
T ss_pred CCCccchhHHhhhcCC--ccccCCCeecc--eeEEECCCeEecCcCChhhCCCC
Confidence 3689999999999998 99999999987 67899999999999999999863
No 47
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.5e-14 Score=82.51 Aligned_cols=58 Identities=22% Similarity=0.566 Sum_probs=51.9
Q ss_pred CCccccccccccc----ceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHH
Q psy284 38 PQECAGCGKHITD----RFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97 (139)
Q Consensus 38 ~~~C~~C~~~i~~----~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~ 97 (139)
.++|.+|+++|.+ .+.+.++++.||++||+|..|+.+| .+..|+.+++++||..||.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L--~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL--ANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBC--TTSCCCEETTEECCHHHHHH
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCC--CCCccEeECCEEEChHHhcc
Confidence 5789999999995 4678999999999999999999999 45678899999999999975
No 48
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=7.3e-15 Score=87.14 Aligned_cols=49 Identities=35% Similarity=0.689 Sum_probs=45.2
Q ss_pred CccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 87 NLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 87 ~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+.+||+.||.++|++ +|..|+++|.+ .+|.++++.||++||+|..|+++
T Consensus 2 ~~~yC~~~y~~~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~ 50 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGE--FCHGCSLLMTG--PFMVAGEFKYHPECFACMSCKVI 50 (81)
T ss_dssp CCCCCCCCSSCCSSC--BCTTTCCBCCS--CCBCCTTCCBCTTSCBCTTTCCB
T ss_pred CCccchhHHhhhcCC--cCccCCCCcCc--eEEEECCceeccccCCccCCCCc
Confidence 578999999999999 99999999984 78999999999999999999863
No 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.45 E-value=5.6e-14 Score=79.96 Aligned_cols=59 Identities=24% Similarity=0.663 Sum_probs=51.7
Q ss_pred CCccccccccccc-ceeeeecCcccc--ccCcccccCCCCcccCCCeeEeeCCcccc-HhhHHHH
Q psy284 38 PQECAGCGKHITD-RFLLKALDMYWH--EDCLKCGCCDCRLGEVGSTLYTKANLILC-KRDYLRL 98 (139)
Q Consensus 38 ~~~C~~C~~~i~~-~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C-~~cy~~~ 98 (139)
.++|.+|+++|.+ .+.+.++++.|| ++||+|..|+.+| .+..|+.+++++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC--TTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC--CCCceEEECCEEecCHHHhhhh
Confidence 3589999999996 357899999999 9999999999999 56679999999999 8888653
No 50
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=1.8e-14 Score=85.47 Aligned_cols=48 Identities=29% Similarity=0.559 Sum_probs=44.1
Q ss_pred CCccccHhhHHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
++++||+.||. ++++ +|..|+++|.+ .+|.++++.||++||+|..|++
T Consensus 2 ~g~~yC~~~y~-~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~ 49 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLE--KCATCSQPILD--RILRAMGKAYHPGCFTCVVCHR 49 (81)
T ss_dssp CCCCCCCCCCC-SSCC--BCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCC
T ss_pred cCCEECHHHhh-cCCC--ccccCCCeecc--eeEEECCccccHHhcCcccCCC
Confidence 57899999998 6777 99999999985 6899999999999999999986
No 51
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.28 E-value=2.1e-12 Score=88.01 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=64.8
Q ss_pred cccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCC----C
Q psy284 40 ECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIP----A 114 (139)
Q Consensus 40 ~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~----~ 114 (139)
+|..|+++|... .++.++++.||+.||+|..|++.|. .+..|+..++++||..||.+++++ +|...+.... .
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~-~g~~f~~~~g~~yC~~c~~~~~~~--~~~~~g~~~~~~~~~ 147 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLV-PGDRFHYINGSLFCEHDRPTALIN--GHLNSGGSGGSGGSG 147 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCC-TTCEEEEETTEEEEGGGCCTTTC------------------
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCC-CCCeEEEECCeEECHHHHHHHhcc--cccccCCCCcccccC
Confidence 799999999974 4678999999999999999999995 345788999999999999999988 8877765210 1
Q ss_pred CceE----EEeCCcccccccccc
Q psy284 115 FEMV----MRARNNVYHLECFAC 133 (139)
Q Consensus 115 ~~~~----~~~~~~~~H~~Cf~C 133 (139)
.+.. ...++..||++..+.
T Consensus 148 ~~v~vvgep~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 148 GDVMVVGEPTLMGGEFGDEDERL 170 (188)
T ss_dssp CCCEECCCCEETTCCCCCTTEEE
T ss_pred CcccccCCCcccCCCCCCCCCce
Confidence 1111 246778888887764
No 52
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.6e-12 Score=76.03 Aligned_cols=62 Identities=23% Similarity=0.514 Sum_probs=49.3
Q ss_pred CCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
.++|..|+++|.+. .+.++++.||++||+|..|+.+|. .+..+...++.+||..||.++++.
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~-~~~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 15 GTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFP-PGDRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp CCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCC-SSSCEEEETTEEEEHHHHSCCSSC
T ss_pred CCcCccccCEeccc-eEEECCceeCccCCccccCCCCCC-CCCEEEeCCCCEEChhhhcccCCC
Confidence 45899999999964 789999999999999999999995 233344445457999999766543
No 53
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.22 E-value=1.1e-11 Score=79.72 Aligned_cols=61 Identities=26% Similarity=0.580 Sum_probs=54.1
Q ss_pred cccccccccccc-eeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC
Q psy284 40 ECAGCGKHITDR-FLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS 101 (139)
Q Consensus 40 ~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~ 101 (139)
+|..|+++|.+. .++.++++.||++||+|..|++.|. .+..|+..++++||..||.++|++
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~-~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFC-VGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCC-TTCEEEEETTEEEEGGGHHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCC-CCCEEEEECCEEEcHHHHHHHhhc
Confidence 899999999874 4678999999999999999999995 356789999999999999998864
No 54
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.17 E-value=4.1e-11 Score=80.22 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=63.5
Q ss_pred CCcccccccccccce-eeeecCccccccCcccccCCCCcccCCCeeE-eeCCccccHhhHHHHhCCCccc--cccCCCCC
Q psy284 38 PQECAGCGKHITDRF-LLKALDMYWHEDCLKCGCCDCRLGEVGSTLY-TKANLILCKRDYLRLFGSTGYC--AACSKVIP 113 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~~C~~cy~~~~~~~~~C--~~C~~~I~ 113 (139)
.++|..|+++|.+.+ ++.+++..||.+||+|..|+..|. .+..++ ..++++||..||.+.+.. .+ .+...+.
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~-~g~~f~~~~~g~~~C~~c~~~~~~~--~~~~~~~~rpr- 140 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLA-TGDEFYLMEDSRLVCKADYETAKQG--GSGGSGGSGGG- 140 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCC-TTCEEEECTTSCEEEHHHHHHHHHC--C-----------
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCC-CCCceEEccCCeEECHHHHHHHhhc--cCCCCCCcCCC-
Confidence 358999999998853 467899999999999999999995 245565 468899999999988765 33 2333332
Q ss_pred CCceEEEeCCccccccccc
Q psy284 114 AFEMVMRARNNVYHLECFA 132 (139)
Q Consensus 114 ~~~~~~~~~~~~~H~~Cf~ 132 (139)
..+.+....+|...|.
T Consensus 141 ---t~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 141 ---TPMVAASPERHDGGLQ 156 (169)
T ss_dssp ---EEEECCCCEECCSSCC
T ss_pred ---CcccHHHHHHHHHHHh
Confidence 3566777777777664
No 55
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.15 E-value=3.7e-11 Score=76.67 Aligned_cols=60 Identities=22% Similarity=0.674 Sum_probs=52.9
Q ss_pred CCcccccccccccc-eeeeecCcccc--ccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHh
Q psy284 38 PQECAGCGKHITDR-FLLKALDMYWH--EDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99 (139)
Q Consensus 38 ~~~C~~C~~~i~~~-~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~ 99 (139)
.++|..|+++|.+. ..+.++++.|| ++||+|..|+++| .+..|+..++++||..+|.++|
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l--~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBC--TTSEEEEETTEEESSHHHHHSC
T ss_pred CccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCcc--CCCeeEeECCEEcchHHhhhhc
Confidence 46899999999973 56889999999 9999999999999 4677889999999998887765
No 56
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=2e-11 Score=70.48 Aligned_cols=40 Identities=28% Similarity=0.565 Sum_probs=35.9
Q ss_pred HhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 98 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|++ +|..|+++|.+.+.+|.++++.||++||+|..|+++
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 42 (72)
T 1x4k_A 3 SGSS--GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQP 42 (72)
T ss_dssp SCCC--CBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCC
T ss_pred ccCC--CCccCCCcccCCceEEEECcCeecccCCcccccCCc
Confidence 4666 999999999986789999999999999999999863
No 57
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.11 E-value=3.2e-11 Score=70.45 Aligned_cols=40 Identities=33% Similarity=0.600 Sum_probs=35.3
Q ss_pred HhCCCccccccCCCCCC--CceEEEeCCccccccccccccCCCC
Q psy284 98 LFGSTGYCAACSKVIPA--FEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 98 ~~~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|++ +|..|+++|.+ .+.+|.++++.||++||+|..|+++
T Consensus 3 ~~~~--~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~ 44 (76)
T 1x68_A 3 SGSS--GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVS 44 (76)
T ss_dssp TCCC--CCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCB
T ss_pred ccCC--CCccCCCcccCCCCceeEEECCcccCcccCChhhCCCc
Confidence 5667 99999999986 5578999999999999999999863
No 58
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.09 E-value=2.5e-11 Score=70.43 Aligned_cols=38 Identities=32% Similarity=0.620 Sum_probs=33.9
Q ss_pred HhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 98 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|++ +|.+|+++|.+ .+|.++++.||++||+|..|+++
T Consensus 3 ~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~ 40 (73)
T 1wig_A 3 SGSS--GCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQM 40 (73)
T ss_dssp CSCC--SCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCC
T ss_pred cCcC--CcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCC
Confidence 3566 99999999987 78899999999999999999863
No 59
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.08 E-value=3e-11 Score=69.60 Aligned_cols=40 Identities=25% Similarity=0.673 Sum_probs=35.5
Q ss_pred HhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 98 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
.+++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++
T Consensus 9 ~~~~--~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~ 48 (72)
T 3f6q_B 9 SASA--TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ 48 (72)
T ss_dssp CTTC--BCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCC
T ss_pred cCCc--cchhcCccccCCceEEEeCcCeeCcCCCcccCCCCC
Confidence 3455 999999999987778899999999999999999864
No 60
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.07 E-value=3.7e-11 Score=69.31 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=35.3
Q ss_pred HhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 98 LFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 98 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
++++ +|..|+++|.+.+.+|.++++.||++||+|..|+++
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 42 (72)
T 1wyh_A 3 SGSS--GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQP 42 (72)
T ss_dssp CCCC--BCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCB
T ss_pred ccCC--CCccCCCccccCccEEEECccccCcccCeECCCCCc
Confidence 4566 999999999976689999999999999999999863
No 61
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=7e-11 Score=68.17 Aligned_cols=36 Identities=25% Similarity=0.665 Sum_probs=33.2
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|.+|+++|.+.+.+|.++++.||++||+|..|+++
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 42 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQ 42 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCB
T ss_pred CCccCCCccCCCceEEEECCCeEcccCCcccccCCc
Confidence 999999999976679999999999999999999863
No 62
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=6.4e-11 Score=68.35 Aligned_cols=36 Identities=25% Similarity=0.671 Sum_probs=32.8
Q ss_pred cccccCCCCCC--CceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPA--FEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|.+|+++|.+ .+.+|.++++.||++||+|..|+++
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~ 44 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLS 44 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCB
T ss_pred CCcCCCccccCCCCcceEEECCcccCcccCEeccCCCc
Confidence 99999999986 5678999999999999999999863
No 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.03 E-value=7.3e-11 Score=66.85 Aligned_cols=36 Identities=28% Similarity=0.618 Sum_probs=32.8
Q ss_pred cccccCCCCCCCceEEEeCCcccc--ccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYH--LECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~ 139 (139)
+|.+|+++|.+.+..|.++++.|| ++||+|+.|+++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~ 41 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKC 41 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCB
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCc
Confidence 899999999865579999999999 999999999863
No 64
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.03 E-value=3.1e-11 Score=76.85 Aligned_cols=44 Identities=57% Similarity=1.226 Sum_probs=37.5
Q ss_pred HHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 96 LRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 96 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
.++|++.++|..|+++|.+.+.+|.++++.||++||+|..|++.
T Consensus 2 ~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~ 45 (123)
T 2l3k_A 2 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKH 45 (123)
T ss_dssp CSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCB
T ss_pred hhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCC
Confidence 34566545899999999987788999999999999999999863
No 65
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=7.7e-11 Score=70.99 Aligned_cols=40 Identities=28% Similarity=0.521 Sum_probs=34.8
Q ss_pred HHHHhCCCccccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 95 YLRLFGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 95 y~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+...+++ +|..|+++|.+ .+|.++++.||++||+|..|++
T Consensus 20 ~~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~ 59 (90)
T 2dar_A 20 PAGKRTP--MCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKN 59 (90)
T ss_dssp CTTTCCC--BBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCC
T ss_pred CCCCCCC--CCccCCCEecc--eEEEECCccccccCCccCCCCC
Confidence 3455666 99999999965 7899999999999999999986
No 66
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.00 E-value=7.3e-11 Score=66.98 Aligned_cols=36 Identities=31% Similarity=0.675 Sum_probs=32.5
Q ss_pred hCCCccccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 99 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+++ +|.+|+++|.+ .+|.++++.||++||+|..|++
T Consensus 4 ~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~ 39 (66)
T 1nyp_A 4 GVP--ICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEK 39 (66)
T ss_dssp CCC--EETTTTEECCS--CEECCTTSBEETTTCBCTTTCC
T ss_pred CCC--CCcccCCEecc--eEEEECccccccCcCEECCCCC
Confidence 455 99999999984 6899999999999999999986
No 67
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.00 E-value=1.9e-10 Score=67.15 Aligned_cols=36 Identities=28% Similarity=0.774 Sum_probs=33.3
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|.+|+++|.+.+.++.+.++.||++||+|..|+++
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 48 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ 48 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCC
T ss_pred CchhcCCccCCCceEEEeCccEeccccCeECCCCCC
Confidence 999999999876789999999999999999999864
No 68
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=98.98 E-value=4.3e-10 Score=76.09 Aligned_cols=60 Identities=28% Similarity=0.653 Sum_probs=49.7
Q ss_pred CCcccccccccccce-eeeecCccccccCcccccCCCCcccCCCeeE-eeCCccccHhhHHHH
Q psy284 38 PQECAGCGKHITDRF-LLKALDMYWHEDCLKCGCCDCRLGEVGSTLY-TKANLILCKRDYLRL 98 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~~C~~cy~~~ 98 (139)
.++|..|+++|.+.+ ++.+.+..||+.||+|..|++.|. .+..|+ ..++++||..||.+.
T Consensus 119 ~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~-~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 119 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLA-TGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp SCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCC-TTCEEEECTTSCEECHHHHHHH
T ss_pred ccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCC-CCCceEEccCCEEECHHHHHHh
Confidence 468999999998753 457899999999999999999995 345555 468899999999864
No 69
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=3e-10 Score=65.15 Aligned_cols=33 Identities=39% Similarity=0.893 Sum_probs=31.0
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|..|+++|.+ .+|.++++.||++||+|..|++
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~ 39 (70)
T 2d8x_A 7 GCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQE 39 (70)
T ss_dssp BCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCC
T ss_pred cCccCCCEecc--eEEEECcccccccCCEeCCCCC
Confidence 89999999986 6899999999999999999986
No 70
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=2.8e-10 Score=65.21 Aligned_cols=37 Identities=32% Similarity=0.674 Sum_probs=32.6
Q ss_pred hCCCccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 99 FGSTGYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 99 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+++ +|..|+++|.+ ..|.++++.||++||+|..|+++
T Consensus 4 ~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~ 40 (70)
T 2d8z_A 4 GSS--GCVQCKKPITT--GGVTYREQPWHKECFVCTACRKQ 40 (70)
T ss_dssp CCC--BCSSSCCBCCS--SEEESSSSEEETTTSBCSSSCCB
T ss_pred CCC--CCcccCCeecc--ceEEECccccCCCCCccCCCCCc
Confidence 445 99999999986 57999999999999999999863
No 71
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.94 E-value=3.2e-10 Score=64.84 Aligned_cols=34 Identities=26% Similarity=0.783 Sum_probs=31.1
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|..|+++|.+ ..|.++++.||++||+|..|+++
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~ 40 (69)
T 2cur_A 7 GCVKCNKAITS--GGITYQDQPWHADCFVCVTCSKK 40 (69)
T ss_dssp CCSSSCCCCCT--TCEEETTEEECTTTTBCTTTCCB
T ss_pred CCcccCCEeCc--ceEEECccccccCcCEECCCCCC
Confidence 99999999986 57899999999999999999863
No 72
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.92 E-value=4.9e-10 Score=65.80 Aligned_cols=34 Identities=26% Similarity=0.769 Sum_probs=31.5
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|..|+++|.+ .+|.++++.||++||+|..|+++
T Consensus 17 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 17 MCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCC
T ss_pred ccccCCCCccC--cEEEECcceeCcCcCeeCCCCCC
Confidence 89999999987 58999999999999999999864
No 73
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.91 E-value=6.1e-10 Score=64.86 Aligned_cols=35 Identities=20% Similarity=0.567 Sum_probs=31.2
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|..|+++|.+. ..|.++++.||++||+|..|+++
T Consensus 11 ~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~ 45 (76)
T 2cu8_A 11 KCPKCDKTVYFA-EKVSSLGKDWHKFCLKCERCSKT 45 (76)
T ss_dssp BCTTTCCBCCTT-TEEEETTEEEETTTCBCSSSCCB
T ss_pred CCcCCCCEeECC-eEEEECCeEeeCCCCCCCCCCCc
Confidence 999999999864 46789999999999999999863
No 74
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=9.4e-10 Score=64.78 Aligned_cols=35 Identities=31% Similarity=0.724 Sum_probs=31.2
Q ss_pred ccccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 103 GYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 103 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
++|..|+++|... .+|.++++.||++||+|..|++
T Consensus 16 ~~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~ 50 (80)
T 2dj7_A 16 SHCAGCKEEIKHG-QSLLALDKQWHVSCFKCQTCSV 50 (80)
T ss_dssp SCCTTTCCCCSSS-CCEEETTEEECTTTCBCSSSCC
T ss_pred CCCcCcCCeeCCC-eEEEECCcccccccCCcCcCCC
Confidence 3899999999853 5788999999999999999976
No 75
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.87 E-value=5.8e-10 Score=65.52 Aligned_cols=33 Identities=27% Similarity=0.745 Sum_probs=30.8
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|..|+++|.+ .+|.++++.||++||+|..|++
T Consensus 17 ~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~ 49 (79)
T 2cor_A 17 ICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGK 49 (79)
T ss_dssp BCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCC
T ss_pred CCccCCCEecc--eEEEECcceeCCCCCEeCCCCC
Confidence 89999999985 7789999999999999999986
No 76
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=1.2e-09 Score=63.65 Aligned_cols=35 Identities=20% Similarity=0.573 Sum_probs=31.0
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|.+|+++|... ..|.++++.||++||+|..|+++
T Consensus 2 ~C~~C~~~I~~~-~~v~a~~~~~H~~CF~C~~C~~~ 36 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSLGKDWHRPCLKCEKCGKT 36 (76)
T ss_dssp BCTTTSSBCCGG-GEEEETTEEEETTTCBCTTTCCB
T ss_pred cCCCCCCEEECc-eEEEECCccccCCCCCccccCcc
Confidence 899999999853 57899999999999999999863
No 77
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.85 E-value=1.2e-09 Score=65.50 Aligned_cols=34 Identities=38% Similarity=0.864 Sum_probs=31.4
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|..|+++|.+ .+|.++++.||++||+|..|++.
T Consensus 27 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~ 60 (89)
T 1x64_A 27 LCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLN 60 (89)
T ss_dssp BCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCC
T ss_pred CcccCCCEecc--cEEEECCceECccCCEecCCCCC
Confidence 89999999987 68999999999999999999863
No 78
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.84 E-value=1.2e-09 Score=64.64 Aligned_cols=36 Identities=25% Similarity=0.751 Sum_probs=31.0
Q ss_pred ccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 103 GYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 103 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
.+|.+|+++|...+ .|.++++.||++||+|..|+++
T Consensus 16 ~~C~~C~~~I~~~e-~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 16 DLCALCGEHLYVLE-RLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp CBCSSSCCBCCTTT-BCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCcccCCCcccce-EEEECCCeeCCCcCEEcCCCCC
Confidence 38999999997644 4569999999999999999863
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=68.60 Aligned_cols=34 Identities=26% Similarity=0.765 Sum_probs=31.1
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|.+|+++|.+ ..+|.++++.||++||+|..|++
T Consensus 63 ~C~~C~~~I~~-~~~v~a~~~~wH~~CF~C~~C~~ 96 (123)
T 2l4z_A 63 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQA 96 (123)
T ss_dssp BBSSSSSBCCS-SSEEEETTEEEETTTSBCTTTCC
T ss_pred cCcCCCCCcCC-cEEEEeCCcEEcccccCcCcCCC
Confidence 99999999987 34789999999999999999986
No 80
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.81 E-value=3e-09 Score=66.68 Aligned_cols=36 Identities=25% Similarity=0.719 Sum_probs=32.0
Q ss_pred ccccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 103 GYCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 103 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
++|.+|+++|.+ ..++.++++.||++||+|+.|+++
T Consensus 4 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~ 39 (114)
T 1j2o_A 4 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCR 39 (114)
T ss_dssp BCBSSSCSCBCS-SEEEECSSSEECTTTCCCSSSCSC
T ss_pred CCCcCCCCeeCC-cEEEEECchhHHHhcCcccccCCc
Confidence 489999999986 348899999999999999999864
No 81
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.81 E-value=2.7e-09 Score=65.32 Aligned_cols=36 Identities=33% Similarity=0.692 Sum_probs=32.7
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|..|+++|.+.+.+|.++++.||++||+|..|+++
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 42 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHP 42 (101)
T ss_dssp BCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCC
T ss_pred cCcccCCcccCCceEEEECccChhhcCCcccccCCC
Confidence 999999999854589999999999999999999864
No 82
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.78 E-value=2.3e-09 Score=63.14 Aligned_cols=34 Identities=24% Similarity=0.662 Sum_probs=30.9
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|..|+++|... ..+.+.++.||++||+|..|++
T Consensus 9 ~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~ 42 (81)
T 1a7i_A 9 KCGACGRTVYHA-EEVQCDGRSFHRCCFLCMVCRK 42 (81)
T ss_dssp BCSSSCCBCSST-TEEEETTEEEESSSEECSSSCC
T ss_pred cCcCcCccccCc-eeEEeCCcccccccCccCCCCC
Confidence 999999999754 4789999999999999999986
No 83
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.72 E-value=6.6e-09 Score=62.51 Aligned_cols=34 Identities=35% Similarity=0.928 Sum_probs=30.9
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
+|..|+++|.+.+ .|.++++.||++||+|..|++
T Consensus 17 ~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~ 50 (91)
T 2d8y_A 17 TCVECQKTVYPME-RLLANQQVFHISCFRCSYCNN 50 (91)
T ss_dssp BCTTTCCBCCTTS-EEECSSSEEETTTCBCTTTCC
T ss_pred cCccCCCccCCce-eEEECCCEECCCCCeeCCCCC
Confidence 8999999998754 578999999999999999976
No 84
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.69 E-value=3.9e-09 Score=66.91 Aligned_cols=35 Identities=26% Similarity=0.723 Sum_probs=31.3
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNHR 139 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 139 (139)
+|..|+++|.+. .+|.++++.||++||+|..|+++
T Consensus 7 ~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~ 41 (122)
T 1m3v_A 7 RCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQ 41 (122)
T ss_dssp CBSSSSSCCCSS-CCEEETTEEECHHHHCCSSSCCC
T ss_pred CCcccCCEeCCc-EEEEECCceeHhhCCCcCCCCCc
Confidence 999999999873 36889999999999999999864
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.26 E-value=3.3e-07 Score=43.96 Aligned_cols=29 Identities=34% Similarity=0.875 Sum_probs=26.6
Q ss_pred CCcccccccccccceeeeecCccccccCc
Q psy284 38 PQECAGCGKHITDRFLLKALDMYWHEDCL 66 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 66 (139)
.++|..|++.++..+.+.++++.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 45899999999998889999999999997
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.09 E-value=7.7e-07 Score=42.63 Aligned_cols=27 Identities=30% Similarity=0.739 Sum_probs=24.0
Q ss_pred cccccCCCCCCCceEEEeCCcccccccc
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECF 131 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 131 (139)
+|..|++.+.+.| .+.+.|+.||..||
T Consensus 5 ~C~~C~k~Vy~~E-k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTE-KVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGG-CCCSSSSCCCGGGC
T ss_pred cCCccCCEEecce-eEEECCeEecccCC
Confidence 8999999999875 55689999999998
No 87
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.29 E-value=0.11 Score=29.82 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=29.2
Q ss_pred CCCCCcccccccccccceeeeecCccccccCcccc
Q psy284 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCG 69 (139)
Q Consensus 35 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~ 69 (139)
....-.|..|.+.+.+...+.--...-|+-||-|.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 45567899999999997667777888899999976
No 88
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=85.17 E-value=2.2 Score=23.62 Aligned_cols=47 Identities=4% Similarity=0.133 Sum_probs=34.3
Q ss_pred CcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC-CccccccCCCCCC
Q psy284 65 CLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS-TGYCAACSKVIPA 114 (139)
Q Consensus 65 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 114 (139)
-|.|..|...+. ......-|..||..|..+.+.. ...|..|..++..
T Consensus 8 ~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 467888877663 2355678889999998766543 3479999999865
No 89
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.64 E-value=1.3 Score=24.64 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=8.5
Q ss_pred cccccCCCCCC
Q psy284 104 YCAACSKVIPA 114 (139)
Q Consensus 104 ~C~~C~~~I~~ 114 (139)
.|..|...|..
T Consensus 54 ~CP~Cr~~~~~ 64 (78)
T 2ect_A 54 SCPVCRKSLTG 64 (78)
T ss_dssp SCTTTCCCCCC
T ss_pred cCcCcCCccCC
Confidence 78888887765
No 90
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=83.45 E-value=2.1 Score=21.85 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=14.4
Q ss_pred CCccccHhhHHHHhCCCccccccCCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVI 112 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I 112 (139)
-+..||..|..+.+.....|..|...|
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 344455555544333333677777665
No 91
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.95 E-value=1.3 Score=24.30 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=29.7
Q ss_pred cccccCCCCcccCCCeeEe-eCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYT-KANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~-~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+. . .... .-+..||..|..+.+.....|..|...|..
T Consensus 16 ~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 16 ILCSICKGYLI--D-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GSCTTTSSCCS--S-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCChHHH--C-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 56667766652 1 2333 667788888876544222389999998865
No 92
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=80.87 E-value=1.6 Score=25.52 Aligned_cols=46 Identities=15% Similarity=0.422 Sum_probs=32.6
Q ss_pred cccccCCCCcccCCCeeEe-eCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYT-KANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~-~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ..... .-|..||..|..+.+.....|..|...+..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 67777876663 23344 677889999987666544489999998865
No 93
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.55 E-value=2.6 Score=22.88 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=18.2
Q ss_pred eCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 85 KANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 85 ~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
.-+..||..|..+.+.....|..|...|..
T Consensus 32 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 32 PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 445556666665544333378888887753
No 94
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=80.49 E-value=2.6 Score=26.31 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=34.2
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ......-|..||..|..+.+.....|..|..+|..
T Consensus 54 ~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 56888877763 23556788899999987665544589999999864
No 95
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.83 E-value=2.1 Score=22.90 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=30.0
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHh-CCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF-GSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~-~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+.. .....-+..||..|..+.+ .....|..|...|..
T Consensus 16 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456666655531 1224667788999987766 222379999998865
No 96
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.26 E-value=2.7 Score=23.63 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=14.0
Q ss_pred CCCCCCCCcccccccccccc
Q psy284 32 PNNAQGPQECAGCGKHITDR 51 (139)
Q Consensus 32 ~~~~~~~~~C~~C~~~i~~~ 51 (139)
.........|..|...|...
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g 28 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQG 28 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSS
T ss_pred hhccCCCCcCcchhhHcccC
Confidence 34556677899998887643
No 97
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.00 E-value=2.4 Score=23.13 Aligned_cols=29 Identities=7% Similarity=0.283 Sum_probs=16.9
Q ss_pred CCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
-+..||..|..+.+.....|..|...|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34456666654432222278888888764
No 98
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=78.97 E-value=2.2 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=15.9
Q ss_pred CccccHhhHHHHhCCCccccccCCCCCC
Q psy284 87 NLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 87 ~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+..||..|..+.+.....|..|...|..
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 4455666654332222278888887754
No 99
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.14 E-value=1.3 Score=24.02 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=27.6
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPAF 115 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 115 (139)
+.|..|...+. . ....-+..||..|..+.+.....|..|...|...
T Consensus 16 ~~C~IC~~~~~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRA--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCC--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCcc--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 45555555542 1 3445566677777765544334788888888653
No 100
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=77.70 E-value=2.2 Score=21.67 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=15.9
Q ss_pred CCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 86 ANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
-+..||..|..+.+.....|..|...|.+
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 34455666654332211278888877753
No 101
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=77.36 E-value=2.9 Score=24.80 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=34.0
Q ss_pred CcccccCCCCcccCCCeeEe-eCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 65 CLKCGCCDCRLGEVGSTLYT-KANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 65 Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
-+.|..|...+. ..... .-|..||..|..+.+.....|..|...+..
T Consensus 15 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 367888877663 23454 788899999987765543489999998865
No 102
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.62 E-value=2 Score=24.03 Aligned_cols=45 Identities=22% Similarity=0.449 Sum_probs=26.5
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIP 113 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~ 113 (139)
+.|..|...+. ......-+..||..|..+.+.....|..|...+.
T Consensus 16 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45555655542 2234455667787776554432237888888875
No 103
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.57 E-value=4.9 Score=21.66 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=28.5
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhC---CCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG---STGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~---~~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ......-+..||..|..+.+. ....|..|...|..
T Consensus 21 ~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45556655552 223345667788888776652 22379999998865
No 104
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.61 E-value=4.5 Score=22.42 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=27.6
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC------CccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS------TGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~------~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ......-+..||..|..+.+.. ...|..|...+..
T Consensus 20 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45666655552 1233456667788886543221 2389999998875
No 105
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=74.10 E-value=2.7 Score=22.44 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=19.4
Q ss_pred EeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 83 YTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 83 ~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
...-+..||..|..+.+.....|..|...|..
T Consensus 21 ~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 21 ALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp ETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred ecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 33455667777765433222379999988854
No 106
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=72.92 E-value=4.4 Score=23.28 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=27.0
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
..|..|...+..........-+..||..|..+.+.....|..|...|..
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 3455555444311112223455667777765544444489899887754
No 107
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=71.93 E-value=5.2 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=29.6
Q ss_pred cccCCCCcccCCCeeEeeCCccccHhhHHHHh-CCCccccccCCCCCCCc
Q psy284 68 CGCCDCRLGEVGSTLYTKANLILCKRDYLRLF-GSTGYCAACSKVIPAFE 116 (139)
Q Consensus 68 C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~-~~~~~C~~C~~~I~~~~ 116 (139)
|..|+.++. ...-.+.-+..+|.+|+.... .....|..|..+|..-|
T Consensus 4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred cCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 556777763 122234556789999986531 22238999999996533
No 108
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=71.73 E-value=7.8 Score=23.39 Aligned_cols=74 Identities=19% Similarity=0.396 Sum_probs=46.6
Q ss_pred CcccccccccccceeeeecCccccccCcccccCCCCcccC----CCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 39 QECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEV----GSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 39 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~----~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
..|..|...+........ ....+-+.|..|...+... .......-+..||..|..+.+.....|..|...|..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 479999998876533221 1123346788887766321 112445678889999976543333389999999976
Q ss_pred C
Q psy284 115 F 115 (139)
Q Consensus 115 ~ 115 (139)
.
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 3
No 109
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=71.13 E-value=9 Score=22.54 Aligned_cols=49 Identities=10% Similarity=0.025 Sum_probs=36.5
Q ss_pred ccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 63 EDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 63 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
++-|.|..|...+. ..+....|..||..|-.+.+.....|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 45688888877663 34666789999999976665444589999998865
No 110
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.74 E-value=5.8 Score=21.63 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=14.5
Q ss_pred CccccHhhHHHHhCCCccccccCCCCCC
Q psy284 87 NLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 87 ~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+..||..|..+.+.....|..|...|..
T Consensus 45 ~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 45 NHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp TEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3444555543322112278888877754
No 111
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=70.65 E-value=1.8 Score=35.29 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=25.7
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcc
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 76 (139)
+-...|..|-..+.+. .++.|+---..|..|+-+..
T Consensus 104 pD~a~C~~Cl~e~~dp-----~~rry~ypF~nCt~CGPR~t 139 (772)
T 4g9i_A 104 PDIAICDDCLRELFDP-----TNKRYMYPFIVCTNCGPRFT 139 (772)
T ss_dssp CCCCCCHHHHHHHSST-----TSTTTTCTTCCCTTSSCCGG
T ss_pred CchhhhHHHHHHhcCC-----CCCccCCccccCCCCCchhh
Confidence 4456899999888875 25666655567888886653
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.42 E-value=8.6 Score=23.20 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCcccccccccccc----e--eeeecCccccccCc--------ccccCCCCcc
Q psy284 38 PQECAGCGKHITDR----F--LLKALDMYWHEDCL--------KCGCCDCRLG 76 (139)
Q Consensus 38 ~~~C~~C~~~i~~~----~--~~~~~~~~~H~~Cf--------~C~~C~~~l~ 76 (139)
...|.-|...+.+. . ++..=+..||..|+ .|..|...+.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 45677787765442 1 22233556666655 5667776663
No 113
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=69.57 E-value=3.4 Score=21.58 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=22.7
Q ss_pred eEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 82 LYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 82 ~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
....-+..||..|..+.+.....|..|...+..
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 344566778888876544323389999998876
No 114
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=68.72 E-value=11 Score=22.11 Aligned_cols=49 Identities=6% Similarity=-0.098 Sum_probs=35.4
Q ss_pred ccCcccccCCCCcccCCCeeEeeCC-ccccHhhHHHHhCCCccccccCCCCCC
Q psy284 63 EDCLKCGCCDCRLGEVGSTLYTKAN-LILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 63 ~~Cf~C~~C~~~l~~~~~~~~~~~~-~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
++-|.|..|...+. ..+....| ..||..|-.+.+.....|..|+.++..
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34578888876663 34666777 899999977665444589999998865
No 115
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.24 E-value=4 Score=22.62 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=25.6
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC------CccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS------TGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~------~~~C~~C~~~I~~ 114 (139)
+.|..|...+.. .....-+..||..|..+.+.. ...|..|...+..
T Consensus 20 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 445555544421 122345566777776543211 2389999998875
No 116
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=67.64 E-value=2.1 Score=26.28 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=18.0
Q ss_pred cccccCCCCCCCceEEEeC----------Cccccccccc
Q psy284 104 YCAACSKVIPAFEMVMRAR----------NNVYHLECFA 132 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~----------~~~~H~~Cf~ 132 (139)
.|..|+..|.-.+..|... .+=||..||.
T Consensus 22 ~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 22 SCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp BCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 7888998887654433311 2345678875
No 117
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.52 E-value=5.6 Score=22.26 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=20.5
Q ss_pred EeeCCccccHhhHHHHhCC---CccccccCCCCCC
Q psy284 83 YTKANLILCKRDYLRLFGS---TGYCAACSKVIPA 114 (139)
Q Consensus 83 ~~~~~~~~C~~cy~~~~~~---~~~C~~C~~~I~~ 114 (139)
...-+..||..|..+.+.. ...|..|...+..
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 34 LLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp ECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3345667788886554321 1379999998754
No 118
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=67.22 E-value=4 Score=26.23 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=33.0
Q ss_pred CcccccCCCCcccCCCeeEe-eCCccccHhhHHHHhCC-CccccccCCCCCC
Q psy284 65 CLKCGCCDCRLGEVGSTLYT-KANLILCKRDYLRLFGS-TGYCAACSKVIPA 114 (139)
Q Consensus 65 Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 114 (139)
-+.|..|...+. ..... .-+..||..|..+.+.. ...|..|..+|..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 467888877773 23444 77889999998765432 3379999998854
No 119
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=67.22 E-value=2.8 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=19.3
Q ss_pred eCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 85 KANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 85 ~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
.-+..||..|..+.+.....|..|...+..
T Consensus 34 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 34 ECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 445567777765443222389999988865
No 120
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=66.46 E-value=6.8 Score=23.76 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=33.1
Q ss_pred CcccccCCCCcccCCCeeEeeCCccccHhhHHHHhC-CCccccccCCCCCC
Q psy284 65 CLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFG-STGYCAACSKVIPA 114 (139)
Q Consensus 65 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~-~~~~C~~C~~~I~~ 114 (139)
-+.|..|...+. ......-|..||..|....+. ....|..|..+|..
T Consensus 52 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 367888877763 335567788899999765543 22289999998865
No 121
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=66.45 E-value=1.5 Score=27.05 Aligned_cols=29 Identities=34% Similarity=0.723 Sum_probs=18.4
Q ss_pred cccccCCCCCCCceEEEe-------CC---ccccccccc
Q psy284 104 YCAACSKVIPAFEMVMRA-------RN---NVYHLECFA 132 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~-------~~---~~~H~~Cf~ 132 (139)
.|..|++.|...+..|.. .+ .=||..||.
T Consensus 40 ~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~ 78 (116)
T 3od8_A 40 SCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 78 (116)
T ss_dssp BCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHH
T ss_pred cCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccCh
Confidence 788999999765432221 12 237888886
No 122
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.95 E-value=4.1 Score=21.61 Aligned_cols=29 Identities=17% Similarity=0.458 Sum_probs=17.6
Q ss_pred eCCccccHhhHHHHhCCCccccccCCCCC
Q psy284 85 KANLILCKRDYLRLFGSTGYCAACSKVIP 113 (139)
Q Consensus 85 ~~~~~~C~~cy~~~~~~~~~C~~C~~~I~ 113 (139)
.-+..||..|..+.+.....|..|...|.
T Consensus 39 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 39 ECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34456677776544322237888888775
No 123
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=64.94 E-value=3.8 Score=23.99 Aligned_cols=46 Identities=15% Similarity=0.353 Sum_probs=32.0
Q ss_pred cccccCCCCcccCCCeeE-eeCCccccHhhHHHHhCCC-ccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLY-TKANLILCKRDYLRLFGST-GYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~-~~~~~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 114 (139)
+.|..|...+. .... ..-+..||..|..+.+... ..|..|..++..
T Consensus 23 ~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 67788877763 2344 5678889999976544322 289999999865
No 124
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=64.74 E-value=4.8 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.2
Q ss_pred eEeeCCccccHhhHHHHhC
Q psy284 82 LYTKANLILCKRDYLRLFG 100 (139)
Q Consensus 82 ~~~~~~~~~C~~cy~~~~~ 100 (139)
|...+.++||.+|++++..
T Consensus 22 ~mSVnTQP~CHEC~errq~ 40 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQK 40 (49)
T ss_dssp BCCTTTTTSCHHHHHHHHT
T ss_pred EEEecCccchHHHHHHHhh
Confidence 4467889999999997653
No 125
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=64.56 E-value=1.8 Score=26.42 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=18.4
Q ss_pred cccccCCCCCCCceEEEe---------CC---ccccccccc
Q psy284 104 YCAACSKVIPAFEMVMRA---------RN---NVYHLECFA 132 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~---------~~---~~~H~~Cf~ 132 (139)
.|..|+..|...+..|.. .| .=||..||.
T Consensus 21 ~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~ 61 (111)
T 3odc_A 21 TCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 61 (111)
T ss_dssp BCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred cccccCCCccCCceEEeEEecCccccCCCCcceeEChhhcc
Confidence 788999999764432221 11 347888886
No 126
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.31 E-value=13 Score=19.51 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=29.9
Q ss_pred cccccCCC-CcccCCCe-eEeeCCccccHhhHHHHhC-CCccccccCCCCCCC
Q psy284 66 LKCGCCDC-RLGEVGST-LYTKANLILCKRDYLRLFG-STGYCAACSKVIPAF 115 (139)
Q Consensus 66 f~C~~C~~-~l~~~~~~-~~~~~~~~~C~~cy~~~~~-~~~~C~~C~~~I~~~ 115 (139)
+.|..|.. .+...... ....-|..||..|..+.+. ....|..|.+++...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45666665 33211111 2346677889988766532 223799999999763
No 127
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=63.81 E-value=2.3 Score=25.66 Aligned_cols=29 Identities=34% Similarity=0.708 Sum_probs=18.0
Q ss_pred cccccCCCCCCCceEEEe-------C---Cccccccccc
Q psy284 104 YCAACSKVIPAFEMVMRA-------R---NNVYHLECFA 132 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~-------~---~~~~H~~Cf~ 132 (139)
+|..|+..|.-.+..|.. . .+=||..||.
T Consensus 27 ~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 27 SCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp BCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred cchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 788899988764432221 1 1356788875
No 128
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=63.62 E-value=5.2 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=19.6
Q ss_pred ccccCCCCcccCCCeeEeeCCcccc-HhhHHH
Q psy284 67 KCGCCDCRLGEVGSTLYTKANLILC-KRDYLR 97 (139)
Q Consensus 67 ~C~~C~~~l~~~~~~~~~~~~~~~C-~~cy~~ 97 (139)
.|..|+..+. ...-+.++++.|| +.|...
T Consensus 9 aC~~C~c~Vs--~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVD--PSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBC--TTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEec--hHHhhhcCCeEEehHHHHcc
Confidence 4566776663 3456788899998 677654
No 129
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=63.20 E-value=4.6 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=14.2
Q ss_pred eeCCccccHhhHHHHhCCCc-cccccCCCCCC
Q psy284 84 TKANLILCKRDYLRLFGSTG-YCAACSKVIPA 114 (139)
Q Consensus 84 ~~~~~~~C~~cy~~~~~~~~-~C~~C~~~I~~ 114 (139)
..-+..||..|..+.+.... .|..|..+|..
T Consensus 34 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 34 TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34455555555443321111 56666555543
No 130
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=62.63 E-value=3.5 Score=22.48 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=18.2
Q ss_pred cccccCCCCCCCceEEEeC---Cccccccc
Q psy284 104 YCAACSKVIPAFEMVMRAR---NNVYHLEC 130 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 130 (139)
.|..|++++.+.+..|.-. ..=||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 6888888876655677666 45566544
No 131
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.40 E-value=4.5 Score=24.37 Aligned_cols=43 Identities=21% Similarity=0.421 Sum_probs=21.3
Q ss_pred cccccCCCCcccCCCeeEe-eCCccccHhhHHHHhCCCccccccCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYT-KANLILCKRDYLRLFGSTGYCAACSKVIP 113 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~-~~~~~~C~~cy~~~~~~~~~C~~C~~~I~ 113 (139)
+.|..|...+. ..... .-|..||..|..+.+.. .|..|..++.
T Consensus 23 ~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~~--~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTTT--BCSSSCCBCS
T ss_pred CCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhcC--CCcCCCCcCc
Confidence 44555544442 11222 44555666665444433 6666666653
No 132
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.13 E-value=7.5 Score=22.89 Aligned_cols=46 Identities=30% Similarity=0.566 Sum_probs=30.4
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCC---ccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGST---GYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~---~~C~~C~~~I~~ 114 (139)
+.|..|...+.. .....-+..||..|..+.+... ..|..|..+|..
T Consensus 22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 567777666631 2334667888988876655321 279999998875
No 133
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=61.10 E-value=7.1 Score=22.14 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=34.0
Q ss_pred ccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 63 EDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 63 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
++-|.|..|...+. ..+....|..||..|-.+.+.....|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 34578888877663 34666788999998865443223389999988865
No 134
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=59.40 E-value=10 Score=24.00 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=34.3
Q ss_pred CcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCC-ccccccCCCCCC
Q psy284 65 CLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGST-GYCAACSKVIPA 114 (139)
Q Consensus 65 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 114 (139)
-+.|..|...+. ......-+..||..|..+.+... ..|..|...|..
T Consensus 78 ~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 478888987773 34556788899999977655322 279999999875
No 135
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=59.35 E-value=2.8 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=21.1
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHH
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLR 97 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~ 97 (139)
..|..|+... ........+++.+|..|+..
T Consensus 173 ~~C~~CGE~~--~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYT--YEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEE--EGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCch--hhcceeeeCCcEEChhhhcc
Confidence 4677787776 33445667888889888753
No 136
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=58.35 E-value=14 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=15.1
Q ss_pred CCcccccccccccceeee--ecCccccccCcc
Q psy284 38 PQECAGCGKHITDRFLLK--ALDMYWHEDCLK 67 (139)
Q Consensus 38 ~~~C~~C~~~i~~~~~~~--~~~~~~H~~Cf~ 67 (139)
...|..|+..-....++. .=.+.||..|+.
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTT
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhC
Confidence 456777766422111122 124667777655
No 137
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=57.12 E-value=22 Score=21.36 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCCCcccccccccccceeeeec----CccccccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCC
Q psy284 36 QGPQECAGCGKHITDRFLLKAL----DMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKV 111 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~ 111 (139)
.....|..|+. .+.++.-. ...||..|+. |. ....+.-||..| .|..|++.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~------~~P~g~W~Cp~c---------~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LT------QPPYGKWECPWH---------QCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CS------SCCSSCCCCGGG---------BCTTTCSB
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CC------cCCCCCEECCCC---------CCCcCCCC
Confidence 34567888883 23333332 3578887754 31 123456778877 67777765
Q ss_pred C
Q psy284 112 I 112 (139)
Q Consensus 112 I 112 (139)
.
T Consensus 68 ~ 68 (107)
T 4gne_A 68 A 68 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=56.88 E-value=9.9 Score=20.67 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=26.9
Q ss_pred cccccCCCCcccCCCeeEee-CCccccHhhHHHHhCC--CccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTK-ANLILCKRDYLRLFGS--TGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~-~~~~~C~~cy~~~~~~--~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ...... -+..||..|..+.+.. ...|..|...+..
T Consensus 16 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45666655552 223344 4677788886554421 1279999987654
No 139
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=56.39 E-value=5.7 Score=23.72 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=23.9
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC-CccccccCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS-TGYCAACSKVIP 113 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~-~~~C~~C~~~I~ 113 (139)
+.|..|...+. ......-+..||..|..+.+.. ...|..|...|.
T Consensus 16 ~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45555554442 1233345556666665443321 227888888774
No 140
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=56.31 E-value=5 Score=22.00 Aligned_cols=11 Identities=18% Similarity=0.492 Sum_probs=8.7
Q ss_pred cccccCCCCCC
Q psy284 104 YCAACSKVIPA 114 (139)
Q Consensus 104 ~C~~C~~~I~~ 114 (139)
.|..|...+..
T Consensus 55 ~CP~Cr~~~~~ 65 (79)
T 2egp_A 55 SCPVCGISYSF 65 (79)
T ss_dssp CCSSSCCCCCS
T ss_pred cCCCCCCcCCH
Confidence 78888888764
No 141
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=56.24 E-value=6.7 Score=25.22 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=22.6
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCC-ccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGST-GYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~-~~C~~C~~~I~~ 114 (139)
|.|..|...+. ..+...-|..||..|..+.+... ..|..|..+|..
T Consensus 19 ~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45555555542 12334555666666654433110 156666665543
No 142
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=56.10 E-value=3.3 Score=25.43 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=10.7
Q ss_pred cccccCCCCCCCce
Q psy284 104 YCAACSKVIPAFEM 117 (139)
Q Consensus 104 ~C~~C~~~I~~~~~ 117 (139)
.|..|+..|.-.+.
T Consensus 17 ~Ck~C~~kI~KgeL 30 (117)
T 1uw0_A 17 GCKKCKEKIVKGVC 30 (117)
T ss_dssp ECTTSSCEECTTCE
T ss_pred cchhhCcccCCCCe
Confidence 68889999876543
No 143
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=55.91 E-value=9.1 Score=22.81 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=30.8
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCC-CccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGS-TGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~-~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ......-+..||..|..+.+.. ...|..|..+|..
T Consensus 24 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 67777876663 2344677788888887654321 2279999988865
No 144
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=52.50 E-value=19 Score=20.04 Aligned_cols=29 Identities=28% Similarity=0.645 Sum_probs=20.3
Q ss_pred CCccccHhhHHHHhC-CCccccccCCCCCC
Q psy284 86 ANLILCKRDYLRLFG-STGYCAACSKVIPA 114 (139)
Q Consensus 86 ~~~~~C~~cy~~~~~-~~~~C~~C~~~I~~ 114 (139)
-|..+|..|+.+... ....|..|.+++..
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 456678888776541 12389999998865
No 145
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.16 E-value=3.9 Score=25.77 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=10.3
Q ss_pred cccccCCCCCCCc
Q psy284 104 YCAACSKVIPAFE 116 (139)
Q Consensus 104 ~C~~C~~~I~~~~ 116 (139)
.|..|+..|.-.+
T Consensus 29 ~CK~C~~kI~Kge 41 (134)
T 2cs2_A 29 TCKGCMEKIEKGQ 41 (134)
T ss_dssp BCSSSCCBCCTTS
T ss_pred cchhcCCcccCCC
Confidence 7888999987644
No 146
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=51.35 E-value=15 Score=19.95 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=29.4
Q ss_pred cccccCCCCcccCCCeeEeeCCcc-ccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLI-LCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ......=+.. +|..|..+. . .|..|..+|..
T Consensus 25 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV--D--KCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC--S--BCTTTCCBCSE
T ss_pred CCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC--c--cCCCcCcCccC
Confidence 46666766552 2345567777 999997654 4 89999999864
No 147
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=51.14 E-value=8.6 Score=21.78 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=28.2
Q ss_pred cccccCCCCcccCCCeeEee-CCccccHhhHHHHhC--CCccccccCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTK-ANLILCKRDYLRLFG--STGYCAACSKVIP 113 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~-~~~~~C~~cy~~~~~--~~~~C~~C~~~I~ 113 (139)
|.|..|...+. ...... -+..||..|....+. ....|..|...+.
T Consensus 14 ~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 56667766552 223444 477888888765442 1127999999873
No 148
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.45 E-value=37 Score=19.77 Aligned_cols=53 Identities=25% Similarity=0.483 Sum_probs=31.2
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcccCCCeeEeeCCccccHhhHH--HHhCCCccccccCCCC
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYL--RLFGSTGYCAACSKVI 112 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~--~~~~~~~~C~~C~~~I 112 (139)
...++|..|+..|.-. +.+..| . .|..|. -++|+.||. ++-+.+ .|.+|+..-
T Consensus 14 ~~~qiCqiCGD~VG~~----~~Ge~F-V---AC~eC~---------------FPvCrpCyEYErkeG~q-~CpqCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLT----VEGDLF-V---ACNECG---------------FPACRPCYEYERREGTQ-NCPQCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBC----SSSSBC-C---SCSSSC---------------CCCCHHHHHHHHHTSCS-SCTTTCCCC
T ss_pred cCCCccccccCccccC----CCCCEE-E---eeeccC---------------ChhhHHHHHHHHhccCc-cccccCCcc
Confidence 3456888888776543 234332 1 333443 245999975 444432 799998765
No 149
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=48.42 E-value=15 Score=21.62 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=25.3
Q ss_pred eEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 82 LYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 82 ~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+..=.+..+|..|....+....+|..|++++..
T Consensus 41 LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp EEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred eeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 344456788999988777666699999998864
No 150
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=46.95 E-value=9 Score=24.06 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=32.4
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCC-ccccccCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGST-GYCAACSKVIP 113 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~-~~C~~C~~~I~ 113 (139)
|.|..|...+. ..+...-|..||..|..+.+... ..|..|..+|.
T Consensus 32 ~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 67888887773 23556788899999987765422 27999988764
No 151
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.51 E-value=18 Score=19.67 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=28.6
Q ss_pred cccccCCCCcccCCCeeEeeCCcc-ccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLI-LCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+. ......-+.. +|..|..+. . .|..|..+|..
T Consensus 26 ~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV--D--KCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC---CBCCSSSCCCCBCHHHHHHC--S--BCTTTCCBCCC
T ss_pred CCCCcCCCCCC---CEEEecCCCHHHHHHHhhCC--C--CCccCCceecC
Confidence 45666765552 2234456777 999998653 3 89999999865
No 152
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=45.08 E-value=17 Score=21.62 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=13.7
Q ss_pred cccccCCCCCCCceEEEeC---Cccccccc
Q psy284 104 YCAACSKVIPAFEMVMRAR---NNVYHLEC 130 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 130 (139)
.|..|.++..+.+..|.-. ..=||..|
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~C 34 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHREC 34 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGG
T ss_pred CCCCCCCccCCCCCEEEecCCccccccccc
Confidence 4666666654433444444 33455444
No 153
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=44.68 E-value=3.3 Score=33.13 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=25.7
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCcc
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 76 (139)
+....|..|-..+.+. .++.|+---..|..|+-+..
T Consensus 15 pD~a~C~~Cl~e~~dp-----~~Rry~YpF~nCt~CGPR~t 50 (657)
T 3ttc_A 15 PDAATCPACLAEMNTP-----GERRYRYPFINCTHCGPRFT 50 (657)
T ss_dssp CCBCCCHHHHHHHTST-----TSTTTTCTTCCBTTBBCSGG
T ss_pred CchhhhHHHHHHhcCC-----CCcccCCccccCcCCCchHH
Confidence 3455899999988875 25666666667888886653
No 154
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=43.50 E-value=11 Score=25.92 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=16.5
Q ss_pred ccccHhhHHHHhCC--CccccccCCCCCC
Q psy284 88 LILCKRDYLRLFGS--TGYCAACSKVIPA 114 (139)
Q Consensus 88 ~~~C~~cy~~~~~~--~~~C~~C~~~I~~ 114 (139)
..+...|+.+.+.. ...|..|+.++..
T Consensus 201 ~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 201 IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred hHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 34455665554422 1289999998876
No 155
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=43.22 E-value=5.3 Score=32.49 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=26.4
Q ss_pred CCCCCcccccccccccceeeeecCccccccCcccccCCCCcc
Q psy284 35 AQGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRLG 76 (139)
Q Consensus 35 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 76 (139)
.+....|..|-..+.+. .++.|+---..|..|+-+..
T Consensus 108 ~pD~a~C~~Cl~e~~dp-----~~Rry~ypF~nCt~CGPR~t 144 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDP-----KDRRYRYPFINCTNCGPRFS 144 (761)
T ss_dssp CCCBCCCHHHHHHHTCT-----TSTTTTCTTCCBTTBBCSGG
T ss_pred CCCccccHHHHHHhcCC-----CccccCCCcccCCCCCcchh
Confidence 34566999999988875 25666666667888886653
No 156
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=42.99 E-value=5.1 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCCCCCccccccccccccee-ee----e---c---CccccccCccc
Q psy284 34 NAQGPQECAGCGKHITDRFL-LK----A---L---DMYWHEDCLKC 68 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~-~~----~---~---~~~~H~~Cf~C 68 (139)
..++-..|..|+..|....+ +. . . ..+||..||.=
T Consensus 35 AkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~~ 80 (223)
T 4av1_A 35 AKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWK 80 (223)
T ss_dssp CSSTTCBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHTT
T ss_pred ecCCCccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhhh
Confidence 34445689999999876422 21 1 1 24678889874
No 157
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.95 E-value=24 Score=18.19 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=16.3
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHh
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF 99 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~ 99 (139)
+.|..|...+. ......-+..||..|..+.+
T Consensus 21 ~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQ---KPVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCS---SCEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhC---CeEEeCCCCcchHHHHHHHH
Confidence 45555555542 12334556667777765443
No 158
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.70 E-value=28 Score=17.36 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=7.4
Q ss_pred eCCccccHhhHHHH
Q psy284 85 KANLILCKRDYLRL 98 (139)
Q Consensus 85 ~~~~~~C~~cy~~~ 98 (139)
.-+..||..|..+.
T Consensus 32 ~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 32 ECGHNFCKACITRW 45 (58)
T ss_dssp SSCCCCCHHHHHHH
T ss_pred CCCCccCHHHHHHH
Confidence 34455666665544
No 159
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.13 E-value=52 Score=19.07 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=19.3
Q ss_pred CCCCCCCcccccccccccceeeeecC-----ccccccCcc
Q psy284 33 NNAQGPQECAGCGKHITDRFLLKALD-----MYWHEDCLK 67 (139)
Q Consensus 33 ~~~~~~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~ 67 (139)
........| .|+++-.+. +|.-.+ .+||..|..
T Consensus 31 ~d~~e~~yC-iC~~~~~g~-MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CCSCCCBCS-TTCCBCCSC-CCCCSCSSCSCCCCCSTTTT
T ss_pred cCCCCCcEE-ECCCCCCCC-EeEecCCCCCCCCEecccCC
Confidence 344455677 888865543 444333 567877754
No 160
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.41 E-value=44 Score=17.80 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=15.4
Q ss_pred cccccCCCC-cccCCCeeEe--eCCccccHhhHHH
Q psy284 66 LKCGCCDCR-LGEVGSTLYT--KANLILCKRDYLR 97 (139)
Q Consensus 66 f~C~~C~~~-l~~~~~~~~~--~~~~~~C~~cy~~ 97 (139)
..|..|+.. + .+.+|.- =.+--+|..||.+
T Consensus 12 ~~Cd~C~~~pi--~G~RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 12 VECSYCHSESM--MGFRYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSSSCCCSS--CSCEEEESSCSSCEECHHHHHH
T ss_pred CCCcCCCCcce--ecceEEecCCCCchhHHHHHhC
Confidence 556666543 4 2333321 1234578888876
No 161
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=37.93 E-value=29 Score=18.21 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=32.7
Q ss_pred cccccCCCCcccCCCeeEe-eCCccccHhhHHHHhCCCccccccCCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYT-KANLILCKRDYLRLFGSTGYCAACSKVIPAF 115 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~-~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~~ 115 (139)
|.|..+...+. ..+.. ..|..|+..+-.+.+...++|...++++...
T Consensus 4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 67777776663 34566 7899999988665543333788888888653
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=36.83 E-value=24 Score=24.15 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=35.1
Q ss_pred cccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHh---CCCccccccCCCCCC
Q psy284 62 HEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF---GSTGYCAACSKVIPA 114 (139)
Q Consensus 62 H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~---~~~~~C~~C~~~I~~ 114 (139)
-+.-|.|..|...+. ..+....|..||..|-.+.+ +. .|..|..++..
T Consensus 205 ~~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~--~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGH--FNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCS--SCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCC--CCcCCCCCCch
Confidence 345688988887773 34667789999999965443 33 59999999865
No 163
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.11 E-value=10 Score=22.55 Aligned_cols=10 Identities=20% Similarity=0.717 Sum_probs=6.3
Q ss_pred Cccccccccc
Q psy284 39 QECAGCGKHI 48 (139)
Q Consensus 39 ~~C~~C~~~i 48 (139)
..|+.|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 4677776544
No 164
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=34.93 E-value=55 Score=21.50 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=35.1
Q ss_pred ccCcccccCCCCcccCCCeeEeeCCccccHhhHHHHh---CCCccccccCCCCCC
Q psy284 63 EDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLF---GSTGYCAACSKVIPA 114 (139)
Q Consensus 63 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~---~~~~~C~~C~~~I~~ 114 (139)
+.-|.|..|...+. ..+....|..||..|-.+.+ +. .|..|+.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~--tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGH--FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCS--BCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCC--CCCCCcCCCCh
Confidence 56689998887773 45677889999998855433 33 69999998865
No 165
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=34.15 E-value=52 Score=17.10 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=20.3
Q ss_pred eCCcc-ccHhhHHHHhCCCccccccCCCCCC
Q psy284 85 KANLI-LCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 85 ~~~~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
.-|.. +|..|..+.......|..|.++|..
T Consensus 26 pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp TEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 34454 7888876554323389999999954
No 166
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=33.79 E-value=14 Score=20.52 Aligned_cols=14 Identities=43% Similarity=1.066 Sum_probs=10.9
Q ss_pred CCcccccccccccc
Q psy284 38 PQECAGCGKHITDR 51 (139)
Q Consensus 38 ~~~C~~C~~~i~~~ 51 (139)
+.+|+.||+.|.+.
T Consensus 4 PVRCFTCGkvi~~~ 17 (70)
T 1twf_J 4 PVRCFSCGKVVGDK 17 (70)
T ss_dssp CSBCTTTCCBCTTC
T ss_pred CeecCCCCCChHHH
Confidence 45789999988773
No 167
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=33.70 E-value=45 Score=17.63 Aligned_cols=38 Identities=18% Similarity=0.446 Sum_probs=24.2
Q ss_pred CCCCCCCcccc--cccccccceeeeecCccccccCcccccCCCCc
Q psy284 33 NNAQGPQECAG--CGKHITDRFLLKALDMYWHEDCLKCGCCDCRL 75 (139)
Q Consensus 33 ~~~~~~~~C~~--C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l 75 (139)
.....+.+|.+ |...|.+--.+...++.| +|..|...-
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W-----~C~~C~~~N 43 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLW-----ACNFCYQRN 43 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEE-----ECSSSCCEE
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEE-----EcccCCCcC
Confidence 34456779998 998888843343344444 677776544
No 168
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=33.18 E-value=17 Score=17.28 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=10.7
Q ss_pred CCCCCccccccccccc
Q psy284 35 AQGPQECAGCGKHITD 50 (139)
Q Consensus 35 ~~~~~~C~~C~~~i~~ 50 (139)
......|..|++....
T Consensus 9 ~~k~~~C~~C~k~f~~ 24 (48)
T 2epr_A 9 TRKQVACEICGKIFRD 24 (48)
T ss_dssp CCCSEEETTTTEEESS
T ss_pred CCcCeeCCCCCcccCC
Confidence 3445678888876654
No 169
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=32.06 E-value=15 Score=14.50 Aligned_cols=8 Identities=25% Similarity=1.107 Sum_probs=4.3
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 2 ~~C~~C~k 9 (27)
T 1znf_A 2 YKCGLCER 9 (27)
T ss_dssp CBCSSSCC
T ss_pred ccCCCCCC
Confidence 45555654
No 170
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=31.76 E-value=12 Score=19.65 Aligned_cols=13 Identities=38% Similarity=1.068 Sum_probs=10.1
Q ss_pred CCccccccccccc
Q psy284 38 PQECAGCGKHITD 50 (139)
Q Consensus 38 ~~~C~~C~~~i~~ 50 (139)
+.+|+.||++|.+
T Consensus 3 PVRCFTCGkvi~~ 15 (55)
T 1ef4_A 3 PVRCLSCGKPVSA 15 (55)
T ss_dssp SSSCSCTTSCCHH
T ss_pred CeecCCCCCChhH
Confidence 4578889888866
No 171
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.14 E-value=58 Score=17.33 Aligned_cols=29 Identities=14% Similarity=0.374 Sum_probs=20.1
Q ss_pred eEeeCCcc-ccHhhHHHHhCCCccccccCCCCCC
Q psy284 82 LYTKANLI-LCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 82 ~~~~~~~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
.+..-+.. +|..|..+. . .|..|..+|..
T Consensus 29 v~~pCgH~~~C~~C~~~~--~--~CP~CR~~i~~ 58 (68)
T 2ea5_A 29 VLLPCRHTCLCDGCVKYF--Q--QCPMCRQFVQE 58 (68)
T ss_dssp EETTTTBCCSCTTHHHHC--S--SCTTTCCCCCC
T ss_pred EEECCCChhhhHHHHhcC--C--CCCCCCcchhc
Confidence 33445555 788887642 3 89999999965
No 172
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=29.09 E-value=18 Score=14.45 Aligned_cols=8 Identities=38% Similarity=1.306 Sum_probs=4.5
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~~ 10 (29)
T 1ard_A 3 FVCEVCTR 10 (29)
T ss_dssp CBCTTTCC
T ss_pred eECCCCCc
Confidence 45666654
No 173
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.85 E-value=12 Score=14.79 Aligned_cols=8 Identities=25% Similarity=1.348 Sum_probs=4.0
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (26)
T 2lvu_A 3 YVCERCGK 10 (26)
Confidence 44555543
No 174
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.39 E-value=36 Score=18.58 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=17.8
Q ss_pred ccccccCCCCCCCce--EEEeCCcccc
Q psy284 103 GYCAACSKVIPAFEM--VMRARNNVYH 127 (139)
Q Consensus 103 ~~C~~C~~~I~~~~~--~~~~~~~~~H 127 (139)
+.|.-|+..|.+... +|..+++.|+
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEE
Confidence 479999999987543 4556666665
No 175
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.26 E-value=20 Score=14.48 Aligned_cols=8 Identities=50% Similarity=1.344 Sum_probs=4.5
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (30)
T 1paa_A 3 YACGLCNR 10 (30)
T ss_dssp SBCTTTCC
T ss_pred cCCcccCc
Confidence 45666654
No 176
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.11 E-value=23 Score=13.94 Aligned_cols=8 Identities=25% Similarity=1.094 Sum_probs=4.0
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~~ 10 (29)
T 2m0e_A 3 HKCPHCDK 10 (29)
T ss_dssp CCCSSCCC
T ss_pred CcCCCCCc
Confidence 34555544
No 177
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.91 E-value=14 Score=14.69 Aligned_cols=8 Identities=38% Similarity=1.248 Sum_probs=4.4
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 4 ~~C~~C~k 11 (27)
T 2kvh_A 4 FSCSLCPQ 11 (27)
T ss_dssp EECSSSSC
T ss_pred ccCCCcCh
Confidence 45666654
No 178
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.88 E-value=26 Score=19.61 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=15.8
Q ss_pred cccccCCCCCCCceEEEeC-----Ccccccccc
Q psy284 104 YCAACSKVIPAFEMVMRAR-----NNVYHLECF 131 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~-----~~~~H~~Cf 131 (139)
.|..|.......+..+..= .+.||.+|.
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl 49 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACL 49 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHH
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHH
Confidence 5777766554333333222 278888875
No 179
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=26.66 E-value=22 Score=15.04 Aligned_cols=8 Identities=50% Similarity=1.319 Sum_probs=4.7
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (32)
T 2kfq_A 3 FACPACPK 10 (32)
T ss_dssp SSSSSSCT
T ss_pred CCCCCCCc
Confidence 45666654
No 180
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=26.51 E-value=18 Score=19.80 Aligned_cols=14 Identities=43% Similarity=1.011 Sum_probs=11.0
Q ss_pred CCcccccccccccc
Q psy284 38 PQECAGCGKHITDR 51 (139)
Q Consensus 38 ~~~C~~C~~~i~~~ 51 (139)
+.+|+.||+.|.+.
T Consensus 4 PVRCFTCGkvi~~k 17 (66)
T 4ayb_N 4 PIRCFTCGSLIADK 17 (66)
T ss_dssp CSBCTTTCCBCHHH
T ss_pred CcccCCCcHhHHHH
Confidence 45899999988764
No 181
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=25.41 E-value=54 Score=16.38 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=8.0
Q ss_pred eCCccccHhhHH
Q psy284 85 KANLILCKRDYL 96 (139)
Q Consensus 85 ~~~~~~C~~cy~ 96 (139)
.++..+|..|-.
T Consensus 22 p~G~~LCNaCGl 33 (46)
T 1gnf_A 22 RTGHYLCNACGL 33 (46)
T ss_dssp TTCCCBCSHHHH
T ss_pred CCCCccchHHHH
Confidence 355678888843
No 182
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.40 E-value=24 Score=14.02 Aligned_cols=8 Identities=38% Similarity=1.236 Sum_probs=4.3
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (30)
T 1klr_A 3 YQCQYCEF 10 (30)
T ss_dssp CCCSSSSC
T ss_pred ccCCCCCC
Confidence 45555554
No 183
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.11 E-value=17 Score=20.71 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=9.3
Q ss_pred cccccCCCCCCC
Q psy284 104 YCAACSKVIPAF 115 (139)
Q Consensus 104 ~C~~C~~~I~~~ 115 (139)
.|..|++.|.-.
T Consensus 53 FC~~C~~LiSkk 64 (81)
T 2jrp_A 53 FCQNGHGLISKK 64 (81)
T ss_dssp CCTTTTCCCCTT
T ss_pred eeccCCCEeecc
Confidence 688888888764
No 184
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.01 E-value=91 Score=16.93 Aligned_cols=32 Identities=16% Similarity=0.412 Sum_probs=18.9
Q ss_pred CCCCCCcccccccccccceeeeecC-----ccccccCcc
Q psy284 34 NAQGPQECAGCGKHITDRFLLKALD-----MYWHEDCLK 67 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~~~~~~-----~~~H~~Cf~ 67 (139)
.......| .|+++-.+ ++|.-.+ ..||..|..
T Consensus 12 d~~~~~~C-~C~~~~~g-~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp CTTSCCCS-TTCCCSCS-SEECCSCSSCSCCCEETTTTT
T ss_pred CCCCCCEE-ECCCCCCC-CEeEeeCCCCCCccEecccCC
Confidence 33445678 58886544 3444333 578887754
No 185
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.96 E-value=40 Score=17.72 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=22.1
Q ss_pred CCCCCCcccccccccccceeeeecCcccc--ccCcccccCCCCc
Q psy284 34 NAQGPQECAGCGKHITDRFLLKALDMYWH--EDCLKCGCCDCRL 75 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H--~~Cf~C~~C~~~l 75 (139)
.......|..|++.......+.. -...| ..-|.|..|+..+
T Consensus 14 ~~~~~~~C~~C~~~f~~~~~l~~-H~~~h~~~~~~~C~~C~~~f 56 (77)
T 2cot_A 14 RERRRYKCDECGKSFSHSSDLSK-HRRTHTGEKPYKCDECGKAF 56 (77)
T ss_dssp CCSCSSBCSSSCCBCSCHHHHHH-HHTTTCCSCSEECSSSCCEE
T ss_pred CCCCCEECCCCCcccCCHHHHHH-HHHHcCCCcCeeCCCCCCcc
Confidence 33456789999887654311110 01122 2247888887665
No 186
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=24.69 E-value=37 Score=18.50 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=17.5
Q ss_pred ccccccCCCCCCCce--EEEeCCcccc
Q psy284 103 GYCAACSKVIPAFEM--VMRARNNVYH 127 (139)
Q Consensus 103 ~~C~~C~~~I~~~~~--~~~~~~~~~H 127 (139)
+.|.-|+..|.+... +|..+++.|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEE
Confidence 379999999988544 4445666665
No 187
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=24.51 E-value=72 Score=17.49 Aligned_cols=42 Identities=14% Similarity=0.334 Sum_probs=28.5
Q ss_pred cccccCCCCcccCCCeeEeeCCcc-ccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLI-LCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
..|..|..... ...+..-|.. +|..|..+. . .|..|..+|..
T Consensus 19 ~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~--~--~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL--Q--SCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC--S--BCTTTCCBCCE
T ss_pred CEeEEeCcccC---cEEEECCCCHHHHHHHHHhc--C--cCCCCCchhhC
Confidence 35666655542 2345566777 899997653 2 89999999965
No 188
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.47 E-value=79 Score=16.99 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=19.5
Q ss_pred CCCCcccccccccccceeeeecCccccccCcccccCCCCc
Q psy284 36 QGPQECAGCGKHITDRFLLKALDMYWHEDCLKCGCCDCRL 75 (139)
Q Consensus 36 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l 75 (139)
....+|..|+..+.-. .. .=.+|..|+..+
T Consensus 19 ~v~Y~C~~Cg~~~~l~----~~------~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ----AK------EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCC----SS------SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecC----CC------CceECCCCCcEE
Confidence 4567999998766532 11 225787887765
No 189
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=24.00 E-value=35 Score=19.19 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCCCCcccccccccccceeeeecCcccc--ccCcccccCCCCcc
Q psy284 34 NAQGPQECAGCGKHITDRFLLKALDMYWH--EDCLKCGCCDCRLG 76 (139)
Q Consensus 34 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~ 76 (139)
.......|..|++.......+.. -...| ..-|.|..|+..+.
T Consensus 13 ~~~~~~~C~~C~~~f~~~~~l~~-H~~~h~~~~~~~C~~C~~~f~ 56 (106)
T 2ee8_A 13 KTKKEFICKFCGRHFTKSYNLLI-HERTHTDERPYTCDICHKAFR 56 (106)
T ss_dssp CCCCCCBCSSSCCBCSSHHHHHH-HHHHHCCSCCCBCSSSCCBCS
T ss_pred CCCcCeECCCCCCccCCHHHHHH-HHHHcCCCCCcCCCCccchhC
Confidence 44456689999887655311110 01112 13478888887763
No 190
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=23.60 E-value=87 Score=16.24 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCcc-ccHhhHHHHhCCCccccccCCCCCC
Q psy284 86 ANLI-LCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 86 ~~~~-~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
-|.. +|..|..+.......|..|.++|..
T Consensus 28 CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 28 TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 3444 6888876554323379999999954
No 191
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.44 E-value=55 Score=22.87 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=18.1
Q ss_pred cccccCCCCCCCceEEEeCCccccccccccccCCC
Q psy284 104 YCAACSKVIPAFEMVMRARNNVYHLECFACQQCNH 138 (139)
Q Consensus 104 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~ 138 (139)
.|..|+.+|. .+...++.-| .|..|.+
T Consensus 244 pC~~CG~~I~----~~~~~gR~t~----~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQ----KIKVAGRGTH----FCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCE----EEEETTEEEE----ECTTTSC
T ss_pred CCCCCCCEee----EEEECCCceE----ECCCCCC
Confidence 6999999994 4455665544 5666654
No 192
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.24 E-value=29 Score=14.98 Aligned_cols=8 Identities=38% Similarity=1.385 Sum_probs=5.0
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 12 ~~C~~C~k 19 (37)
T 1p7a_A 12 FQCPDCDR 19 (37)
T ss_dssp BCCTTTCC
T ss_pred ccCCCCCc
Confidence 56666665
No 193
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.07 E-value=73 Score=17.38 Aligned_cols=14 Identities=14% Similarity=0.596 Sum_probs=9.5
Q ss_pred CCCCcccccccccc
Q psy284 36 QGPQECAGCGKHIT 49 (139)
Q Consensus 36 ~~~~~C~~C~~~i~ 49 (139)
....+|..|++.+.
T Consensus 13 ~~~~rC~~C~kk~g 26 (67)
T 1x4w_A 13 KSRRRCFQCQTKLE 26 (67)
T ss_dssp SCTTBCSSSCCBCC
T ss_pred ccCCcchhhCCeec
Confidence 34568888887654
No 194
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.76 E-value=24 Score=13.91 Aligned_cols=8 Identities=25% Similarity=1.198 Sum_probs=4.5
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (29)
T 2m0f_A 3 LKCRECGK 10 (29)
T ss_dssp EECTTTSC
T ss_pred ccCCCCCC
Confidence 45666654
No 195
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.12 E-value=26 Score=13.83 Aligned_cols=8 Identities=25% Similarity=1.202 Sum_probs=4.9
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 4 ~~C~~C~k 11 (28)
T 2kvf_A 4 YSCSVCGK 11 (28)
T ss_dssp EECSSSCC
T ss_pred ccCCCCCc
Confidence 55666664
No 196
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=21.93 E-value=9.7 Score=17.93 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=11.1
Q ss_pred cHhhHHHHhCCCccccccCCC
Q psy284 91 CKRDYLRLFGSTGYCAACSKV 111 (139)
Q Consensus 91 C~~cy~~~~~~~~~C~~C~~~ 111 (139)
|..|+.+..+...+|..|..+
T Consensus 10 C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 10 CEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp CTTTCCEECSSCSBCTTTCCB
T ss_pred CCeeEeECccccCEEcccCCc
Confidence 555554444433367777654
No 197
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=21.91 E-value=39 Score=14.82 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=9.0
Q ss_pred cCcccccCCCCc
Q psy284 64 DCLKCGCCDCRL 75 (139)
Q Consensus 64 ~Cf~C~~C~~~l 75 (139)
.|+.|..|+..|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 578888887766
No 198
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.58 E-value=33 Score=14.58 Aligned_cols=8 Identities=50% Similarity=1.398 Sum_probs=4.5
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (33)
T 1rim_A 3 FACPECPK 10 (33)
T ss_dssp CCCSSSCC
T ss_pred ccCCCCCc
Confidence 45666654
No 199
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=27.00 E-value=20 Score=14.44 Aligned_cols=8 Identities=25% Similarity=1.198 Sum_probs=3.9
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 4 ~~C~~C~k 11 (30)
T 2lvr_A 4 YVCIHCQR 11 (30)
Confidence 44555543
No 200
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.35 E-value=28 Score=13.80 Aligned_cols=8 Identities=25% Similarity=1.169 Sum_probs=4.6
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 4 ~~C~~C~~ 11 (30)
T 2m0d_A 4 YQCDYCGR 11 (30)
T ss_dssp EECTTTCC
T ss_pred ccCCCCCc
Confidence 45666654
No 201
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.34 E-value=21 Score=17.68 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=9.1
Q ss_pred cccccCCCCCC
Q psy284 104 YCAACSKVIPA 114 (139)
Q Consensus 104 ~C~~C~~~I~~ 114 (139)
.|.+|++||.-
T Consensus 19 vC~~CgkPi~l 29 (44)
T 2lo3_A 19 VCEKCGKPLAL 29 (44)
T ss_dssp ECTTTCCEEET
T ss_pred hhcccCCcchH
Confidence 69999999864
No 202
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=21.20 E-value=1.5e+02 Score=17.90 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=7.9
Q ss_pred cccccCCCCCC
Q psy284 104 YCAACSKVIPA 114 (139)
Q Consensus 104 ~C~~C~~~I~~ 114 (139)
.|..|+...++
T Consensus 61 ~C~~C~t~~tp 71 (115)
T 4hc9_A 61 SCANCQTTTTT 71 (115)
T ss_dssp CCTTTCCSCCS
T ss_pred cCCCcCCCCcc
Confidence 57778777765
No 203
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.00 E-value=28 Score=13.81 Aligned_cols=8 Identities=50% Similarity=1.398 Sum_probs=4.6
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (29)
T 1rik_A 3 FACPECPK 10 (29)
T ss_dssp EECSSSSC
T ss_pred ccCCCCCc
Confidence 45666654
No 204
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.46 E-value=20 Score=14.37 Aligned_cols=8 Identities=25% Similarity=0.854 Sum_probs=3.9
Q ss_pred cccccCCC
Q psy284 131 FACQQCNH 138 (139)
Q Consensus 131 f~C~~C~~ 138 (139)
|.|..|++
T Consensus 3 ~~C~~C~k 10 (29)
T 2lvt_A 3 CQCVMCGK 10 (29)
Confidence 44555543
No 205
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=20.65 E-value=90 Score=15.27 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=9.9
Q ss_pred EeeCCccccHhhHH
Q psy284 83 YTKANLILCKRDYL 96 (139)
Q Consensus 83 ~~~~~~~~C~~cy~ 96 (139)
...++..+|..|..
T Consensus 17 ~gp~G~~LCNaCGl 30 (43)
T 2vut_I 17 RNPEGQPLCNACGL 30 (43)
T ss_dssp ECTTSCEECHHHHH
T ss_pred cCCCCCcccHHHHH
Confidence 34567788999954
No 206
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.54 E-value=41 Score=16.97 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=29.1
Q ss_pred cccccCCCCcccCCCeeEeeCCccccHhhHHHHhCCCccccccCCCCCC
Q psy284 66 LKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGYCAACSKVIPA 114 (139)
Q Consensus 66 f~C~~C~~~l~~~~~~~~~~~~~~~C~~cy~~~~~~~~~C~~C~~~I~~ 114 (139)
+.|..|...+.. .....-+..||..|..+ ... .|..|...+..
T Consensus 7 ~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~-~~~--~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAKC---PKLLPCLHTLCSGCLEA-SGM--QCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCBC---CSCSTTSCCSBTTTCSS-SSS--SCSSCCSSSSC
T ss_pred CCceEeCCccCC---eEEcCCCCcccHHHHcc-CCC--CCCcCCcEeec
Confidence 678888777742 23455777888888654 223 79999888754
Done!